genome.fa.s9153.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009153.1 Hibiscus syriacus cultivar Beakdansim tig00112679_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114696

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343--392	20	2.5	20	87	6	66	16	18	26	40	1.90
360--404	20	2.3	19	81	11	54	15	15	26	42	1.87
4035--4075	21	2.0	21	95	0	73	14	19	26	39	1.90
4036--4122	23	3.9	22	80	5	77	14	14	27	42	1.86
20774--20816	20	2.1	21	86	4	61	39	2	13	44	1.57
22449--22563	19	6.1	19	85	0	140	46	6	18	29	1.73
30303--30346	21	2.1	21	100	0	88	40	9	18	31	1.81
32726--32751	13	2.0	13	100	0	52	38	38	23	0	1.55
35024--35051	12	2.3	12	100	0	56	75	0	25	0	0.81
39417--39492	29	2.6	29	78	0	80	61	10	15	11	1.56
40996--41057	3	20.7	3	74	12	56	62	3	3	30	1.26
40996--41059	24	2.7	23	83	11	76	64	3	3	29	1.24
41257--41570	40	7.4	41	73	12	219	24	19	31	25	1.98
41257--41567	129	2.4	129	96	0	559	24	19	30	25	1.98
41596--41666	28	2.5	28	84	8	83	47	12	14	25	1.79
41616--41691	28	2.6	28	84	15	93	47	11	14	26	1.79
41694--41883	66	2.9	64	73	7	168	37	14	18	28	1.90
42633--42686	28	2.0	28	81	3	65	50	7	11	31	1.66
42593--42762	64	2.6	64	79	6	164	45	13	11	28	1.79
42702--42778	30	2.7	29	80	13	88	42	16	9	31	1.80
42707--42770	30	2.1	30	88	5	94	39	15	10	34	1.83
42758--42861	52	2.0	53	90	3	165	36	15	13	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42690--42950	145	1.8	143	91	1	432	40	14	12	31	1.83
43164--43283	36	3.4	36	82	4	138	36	11	20	31	1.88
43235--43467	105	2.3	101	84	8	283	36	12	20	30	1.89
43493--43602	38	3.0	36	84	12	143	40	12	17	29	1.86
43488--43598	35	3.2	33	84	12	141	42	12	16	28	1.84
43488--43625	73	1.9	72	85	7	190	41	13	16	28	1.86
47552--47613	32	1.9	32	86	0	88	58	12	14	14	1.64
49523--49598	29	2.6	29	78	0	80	61	10	15	11	1.56
51105--51166	3	20.7	3	74	12	56	62	3	3	30	1.26
51105--51168	24	2.7	23	83	11	76	64	3	3	29	1.24
61508--61583	31	2.7	27	74	18	73	47	7	13	31	1.71
64603--64676	25	3.0	25	69	23	75	50	2	1	45	1.24
64604--64707	50	2.1	50	80	8	115	55	1	0	41	1.17
69245--69328	44	1.9	44	92	0	141	41	9	16	32	1.81
72218--72520	45	6.8	45	93	2	497	31	20	6	40	1.79
72233--72520	89	3.2	89	95	1	497	32	20	7	39	1.80
72218--72520	134	2.3	135	92	3	497	31	20	6	40	1.79
74884--74943	31	2.0	30	87	9	86	36	1	25	36	1.66
76291--76728	132	3.1	144	77	16	518	45	7	9	37	1.65
78320--79007	124	5.9	110	84	8	663	26	19	15	37	1.92
78314--78999	248	3.0	225	80	12	812	26	19	15	37	1.92
79415--79491	22	3.5	22	85	7	111	37	14	14	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79863--80063	54	3.8	53	83	6	232	24	22	14	38	1.91
79863--80063	104	1.9	104	86	6	287	24	22	14	38	1.91
82281--82471	94	2.0	93	89	5	287	34	21	15	29	1.94
84758--84783	9	2.9	9	100	0	52	0	11	0	88	0.52
88061--88114	14	3.8	14	85	2	63	51	9	14	24	1.71
94412--94472	19	3.1	20	90	4	97	18	22	37	21	1.94
97026--97082	21	2.7	21	83	8	62	21	22	33	22	1.97
100144--100315	89	1.9	89	90	2	274	44	6	9	38	1.65
105094--105157	22	3.1	21	80	10	62	26	15	26	31	1.96
105480--106026	54	10.1	54	87	5	766	32	18	17	31	1.94
105480--106016	110	5.0	106	87	6	724	32	18	17	32	1.94
107387--107436	20	2.6	19	78	12	57	42	2	0	56	1.11
109366--109430	12	5.5	12	75	8	53	40	38	10	10	1.75
109246--109397	75	2.0	77	85	5	211	37	38	6	17	1.75
109361--109442	35	2.3	36	81	8	96	36	40	10	12	1.78
109413--109470	12	4.9	12	87	2	73	27	51	6	13	1.66

Tables:   1

The End!