genome.fa.s9155.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009155.1 Hibiscus syriacus cultivar Beakdansim tig00112681_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133936

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4169--4222	14	3.8	14	85	2	63	51	9	14	24	1.71
10512--10572	19	3.1	20	90	4	97	18	22	37	21	1.94
13132--13191	21	2.7	23	87	7	79	20	21	36	21	1.95
21292--21355	22	3.1	21	80	10	62	26	15	26	31	1.96
21687--22238	54	10.1	54	88	3	809	32	18	17	31	1.94
21687--22228	112	5.0	108	89	3	825	32	18	17	31	1.94
21687--22238	166	3.4	166	90	2	891	32	18	17	31	1.94
23623--23670	23	2.1	23	84	7	62	45	2	0	52	1.12
25523--25637	36	3.1	36	68	20	101	36	38	6	19	1.76
25627--25692	12	5.5	12	78	5	62	39	37	10	12	1.77
25506--25661	75	2.0	77	85	6	210	37	38	7	17	1.77
25651--25733	12	6.9	12	81	0	76	31	46	8	13	1.72
25622--25733	36	3.1	36	84	0	125	33	43	8	13	1.75
32851--32879	2	14.5	2	100	0	58	48	0	0	51	1.00
34255--34303	21	2.3	21	86	6	64	24	16	28	30	1.96
34272--34352	22	3.7	22	77	9	85	22	23	24	29	1.99
34318--34383	21	3.1	21	70	25	57	25	21	21	31	1.98
37136--37175	19	2.0	21	90	9	66	30	5	5	60	1.40
37438--37513	31	2.4	31	86	2	98	15	13	9	61	1.55
39636--39881	72	3.4	72	90	2	368	32	11	15	39	1.83
40085--40135	23	2.2	23	85	0	66	31	19	9	39	1.84
39928--40535	135	4.3	135	79	10	633	33	12	12	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40095--40144	23	2.2	23	88	0	73	32	16	12	40	1.84
39959--40279	158	2.0	158	89	0	489	33	12	12	42	1.80
41447--41506	24	2.5	24	86	0	84	60	16	11	11	1.60
45267--45356	29	3.0	30	80	16	98	47	11	3	37	1.56
52485--52549	27	2.4	27	97	0	121	30	15	15	38	1.88
52614--52655	22	1.9	22	95	0	75	23	26	26	23	2.00
53840--53886	20	2.4	20	78	3	51	31	12	19	36	1.89
70736--70818	33	2.5	33	79	9	89	25	3	2	68	1.18
70922--71094	85	2.0	85	100	0	346	28	10	6	54	1.60
71111--71170	31	2.0	30	83	9	77	13	8	3	75	1.16
71189--71236	18	2.8	17	84	6	60	18	4	6	70	1.25
73343--73368	12	2.2	12	100	0	52	7	7	61	23	1.49
81892--82063	92	1.9	91	83	3	218	23	27	19	29	1.98
82851--82903	23	2.4	22	78	6	61	64	9	15	11	1.50
86140--86166	12	2.2	12	100	0	54	55	7	14	22	1.64
88797--88857	2	32.0	2	78	15	58	44	3	1	50	1.28
91265--91425	65	2.5	66	87	8	224	27	18	22	31	1.97
91265--91475	65	3.3	62	77	12	203	26	18	23	31	1.97
92821--92932	56	2.0	56	100	0	224	37	21	14	26	1.92
93238--93262	13	1.9	13	100	0	50	64	8	0	28	1.22
93787--93823	19	1.9	19	94	0	65	40	18	5	35	1.74
94606--94630	13	1.9	13	100	0	50	64	8	0	28	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95067--95146	23	3.6	22	76	5	90	25	25	25	25	2.00
100649--100697	19	2.7	17	84	9	53	26	20	28	24	1.99
100714--100765	19	2.7	19	96	0	95	17	19	34	28	1.94
100669--100826	83	1.9	83	83	7	205	26	20	24	29	1.99
101202--101254	21	2.5	21	100	0	106	24	18	26	30	1.98
101687--101728	17	2.5	17	96	0	75	47	9	7	35	1.64
103405--103467	3	21.3	3	82	9	76	3	33	1	61	1.21
104736--104790	24	2.2	25	96	3	103	32	9	12	45	1.74
106115--106186	26	2.9	24	74	11	65	61	0	1	37	1.05
106124--106209	25	3.4	25	77	16	81	59	0	2	38	1.10
106109--106212	25	4.2	24	70	24	74	57	0	1	40	1.10
106139--106199	22	2.6	24	82	7	81	54	0	3	42	1.17
106173--106231	27	2.2	28	81	6	68	50	0	5	44	1.24
109615--109681	14	4.6	14	73	14	64	20	2	1	74	1.03
109623--109740	4	28.2	4	71	21	66	21	6	0	71	1.14
109609--109684	40	1.9	38	87	10	109	21	2	1	75	1.00
109623--109681	22	2.7	22	75	19	77	22	3	0	74	0.96
120186--120224	20	2.0	20	85	10	53	74	5	17	2	1.12
121038--121279	65	3.8	64	83	5	262	38	20	14	26	1.92
123042--123075	3	12.0	3	87	12	54	32	0	0	67	0.91
123089--123181	40	2.3	41	81	5	100	17	7	3	72	1.22
123197--123266	29	2.3	31	85	7	90	22	2	1	72	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123217--123360	4	34.5	4	74	12	103	19	6	2	72	1.16
123223--123301	25	3.2	25	81	1	106	20	3	0	75	0.95
123312--123361	26	1.9	26	83	0	64	18	10	2	70	1.25
126516--126624	25	4.2	26	75	15	84	54	0	1	43	1.17
126587--126643	25	2.3	26	81	6	64	49	0	5	45	1.24
129594--129637	20	2.2	20	87	0	61	38	15	2	43	1.60

Tables:   1

The End!