genome.fa.s9156.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009156.1 Hibiscus syriacus cultivar Beakdansim tig00112682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51629

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
949--1013	31	2.2	29	86	5	85	21	27	13	36	1.92
6044--6084	21	2.0	21	85	0	55	39	17	14	29	1.89
6827--6882	22	2.6	23	83	11	73	25	21	16	37	1.93
8393--8436	17	2.6	17	85	7	63	56	29	0	13	1.38
10400--10462	20	2.9	21	86	9	74	15	25	38	20	1.92
14402--14441	20	2.0	21	85	9	57	27	12	5	55	1.58
15550--15594	22	2.0	22	100	0	90	37	13	17	31	1.89
16340--16390	2	25.5	2	100	0	102	49	0	0	50	1.00
16525--16572	23	2.1	23	96	0	87	72	2	4	20	1.11
19528--19677	60	2.5	60	80	8	146	46	1	17	35	1.57
20663--20710	23	2.1	23	84	7	62	14	12	12	60	1.59
20961--20994	17	2.1	16	88	5	50	17	11	5	64	1.45
21301--21374	21	3.6	21	74	3	87	21	18	25	33	1.96
21297--21397	41	2.5	41	98	0	193	19	19	23	36	1.95
21325--21394	20	3.5	20	76	3	86	15	21	24	38	1.92
21386--21435	22	2.3	22	89	0	82	16	18	26	40	1.90
22053--22101	6	8.2	6	97	0	89	0	18	46	34	1.49
22181--22224	19	2.3	19	88	0	70	34	15	20	29	1.94
29044--29082	14	3.0	13	85	7	53	58	0	2	38	1.12
29043--29075	14	2.4	14	94	0	57	66	0	3	30	1.06
37922--37957	18	2.0	18	88	0	54	55	13	2	27	1.52
38536--38630	29	3.3	29	82	2	111	43	16	6	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43885--43956	31	2.2	33	82	4	85	30	4	6	58	1.43
44040--44077	20	1.9	20	88	0	58	26	7	2	63	1.35
44088--44122	16	2.1	18	89	10	56	25	8	0	65	1.21
47257--47337	23	3.2	24	74	23	78	77	8	13	0	0.98
47258--47330	9	9.0	8	76	8	60	79	6	13	0	0.92
47974--48022	22	2.2	22	92	0	80	32	24	14	28	1.94
48455--48511	28	2.0	28	100	0	114	24	21	22	31	1.98
48967--49243	36	8.0	36	76	12	267	26	19	14	40	1.90
48971--49243	71	3.9	72	74	13	259	26	19	14	39	1.90
48987--49306	134	2.4	135	82	4	403	28	20	12	39	1.89
49218--49374	68	2.4	68	82	5	187	31	22	8	36	1.85
50003--50924	208	4.5	209	87	6	1246	33	26	17	22	1.96
50003--50923	103	9.0	105	88	5	1264	33	26	17	22	1.96
51457--51555	33	2.8	36	86	10	150	42	14	13	30	1.83

Tables:   1

The End!