genome.fa.s9157.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009157.1 Hibiscus syriacus cultivar Beakdansim tig00112683_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96534

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7584--7638	20	2.7	20	78	13	51	32	0	3	63	1.12
7982--8017	18	2.0	18	88	0	54	55	13	2	27	1.52
8588--8681	29	3.3	29	79	5	102	42	17	6	34	1.74
8599--8683	28	3.0	29	82	6	102	43	14	7	35	1.72
14105--14139	16	2.1	18	89	10	56	25	8	0	65	1.21
17309--17414	14	6.9	15	65	21	51	74	9	15	0	1.11
17315--17401	7	11.6	7	72	13	57	78	8	12	1	1.02
17308--17388	28	2.9	27	74	17	76	76	9	13	0	1.02
17317--17380	33	1.9	33	84	6	85	79	7	12	0	0.92
18029--18077	22	2.2	22	92	0	80	32	24	14	28	1.94
19008--19289	36	8.0	36	78	8	303	25	19	14	40	1.89
19028--19352	138	2.4	137	83	2	427	27	20	12	39	1.89
19264--19420	68	2.4	68	84	3	203	32	22	8	35	1.86
20064--21000	105	9.0	105	92	1	1454	33	26	17	22	1.96
21548--21649	34	2.9	36	88	7	163	43	13	13	29	1.83
21546--21683	37	3.8	37	82	4	147	41	13	13	32	1.82
22179--22216	20	1.9	20	88	0	58	26	7	2	63	1.35
22227--22261	16	2.1	18	89	10	56	25	8	0	65	1.21
24147--24362	42	5.1	42	76	2	182	31	18	15	35	1.92
24140--24390	84	3.0	84	80	3	249	33	17	14	34	1.90
24322--24450	40	3.1	41	75	14	115	34	17	13	34	1.89
26946--26991	21	2.2	21	88	0	65	52	19	10	17	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30277--30324	22	2.2	22	88	7	71	41	10	14	33	1.80
31853--31900	18	2.7	17	81	9	51	72	2	4	20	1.11
33450--33742	44	6.7	44	66	6	128	30	17	20	32	1.95
33451--33796	132	2.6	132	90	1	525	29	17	21	32	1.96
33806--34066	118	2.3	111	84	6	326	26	21	14	37	1.92
34499--34811	39	8.0	39	86	4	391	36	15	18	28	1.92
34814--35051	76	3.1	75	85	6	320	41	13	15	30	1.85
34758--35066	151	2.1	146	82	8	374	39	13	16	30	1.87
48842--48879	12	3.1	12	82	17	51	7	10	7	73	1.24
63071--63103	14	2.4	14	90	10	50	0	21	0	78	0.75
67843--67958	24	4.8	24	84	4	144	27	13	18	40	1.88
72922--73037	24	4.8	24	89	4	162	25	15	18	40	1.90
75550--75574	6	4.2	6	100	0	50	16	0	36	48	1.46
78429--78467	12	3.2	12	79	13	53	28	12	23	35	1.91
78417--78528	24	4.7	24	90	4	163	26	11	20	41	1.87
79848--79972	45	2.8	45	87	3	171	30	23	8	38	1.83
84199--84389	93	2.1	93	89	0	292	48	13	11	26	1.76
84467--84491	3	8.3	3	100	0	50	68	32	0	0	0.90
88510--88551	15	2.8	15	100	0	84	66	11	0	21	1.23
88510--88554	7	6.1	7	80	10	54	64	13	0	22	1.28
92012--92056	21	2.1	22	83	4	56	48	4	2	44	1.35
95892--95921	13	2.4	12	94	5	51	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95925--95983	11	5.5	11	77	18	70	10	11	0	77	0.98
95928--95998	32	2.2	33	92	2	117	9	14	0	76	1.03
95928--95998	7	10.9	7	73	24	66	9	14	0	76	1.03
95927--95994	19	3.9	19	78	21	85	10	13	0	76	1.02

Tables:   1

The End!