Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009159.1 Hibiscus syriacus cultivar Beakdansim tig00112686_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 192739
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
File 1 of 2
Found at i:172 original size:45 final size:46
Alignment explanation
Indices: 52--428 Score: 193
Period size: 44 Copynumber: 8.4 Consensus size: 46
42 GGTGAAGGTA
* *
52 ATGGTGGTGGAGG-GATTTATAAACGTAAGGTGGTGGGGAGATGGTG
1 ATGGTGGTGGAGGAGATTTA-AAACGTAAGGAGGAGGGGAGATGGTG
* * *
98 ATGGCGGTGGTGGAGACTTTTAAAA--TAAGGAGGAGGGG-GGTGAG-G
1 ATGGTGGTGGAGGAGA--TTTAAAACGTAAGGAGGAGGGGAGATG-GTG
* * *
143 TTGGTGGTGGAGGAGATTTAAAACGTAAGG-TG-TGGG-GATGGTG
1 ATGGTGGTGGAGGAGATTTAAAACGTAAGGAGGAGGGGAGATGGTG
* * * ** * * * *
186 ATGGAGGTGGTGGAGACTTGTAACAT-ATGA-GAGGGGTGAAGGTG
1 ATGGTGGTGGAGGAGATTTAAAACGTAAGGAGGAGGGGAGATGGTG
* *
230 ATGGTGGTGGAGGAGATTTGTAAACG-AA--AGGTGGGGAGATGGTG
1 ATGGTGGTGGAGGAGATTT-AAAACGTAAGGAGGAGGGGAGATGGTG
* * * * * * * *
274 ATGGAGGTGGTGGAGACTTGT-AGACATATGGAGGTGGTGGTGAAGG-G
1 ATGGTGGTGGAGGAGA-TT-TAAAACGTAAGGAGGAGG-GGAGATGGTG
* * *
321 ATGGTGGTGGAGGAGATTT-AAACGT-AGGTGGTGGGAAGAT-GTG
1 ATGGTGGTGGAGGAGATTTAAAACGTAAGGAGGAGGGGAGATGGTG
* * * * *
364 ATAGAGGTGGTGGAGACTTGT-AAACATATGGAGGAGGGTGA-A-GGTG
1 ATGGTGGTGGAGGAGA-TT-TAAAACGTAAGGAGGAGGG-GAGATGGTG
410 ATGGTGGTGGAGGAGATTT
1 ATGGTGGTGGAGGAGATTT
429 GTAAACTAGG
Statistics
Matches: 249, Mismatches: 57, Indels: 52
0.70 0.16 0.15
Matches are distributed among these distances:
42 5 0.02
43 54 0.22
44 61 0.24
45 42 0.17
46 50 0.20
47 24 0.10
48 9 0.04
49 4 0.02
ACGTcount: A:0.26, C:0.03, G:0.47, T:0.24
Consensus pattern (46 bp):
ATGGTGGTGGAGGAGATTTAAAACGTAAGGAGGAGGGGAGATGGTG
Found at i:197 original size:88 final size:90
Alignment explanation
Indices: 1--516 Score: 519
Period size: 88 Copynumber: 5.7 Consensus size: 90
* * * *
1 TGGTGATGGAGGTGGTGGA-AATTGTAGACATATGGAGTG-GTGGTGAAGGTAATGGTGGTGGAG
1 TGGTGATGGAGGTGGTGGAGACTTGTA-AAATAAGGAG-GAGGGGTGAAGGT-ATGGTGGTGGAG
64 G-GATTTATAAACGTAAGGTGGTGGGGAGA
63 GAGATTTA-AAACGTAAGGTGGT-GGGAGA
* *
93 TGGTGATGGCGGTGGTGGAGACTTTTAAAATAAGGAGGAGGGGGGTG-AGGT-TGGTGGTGGAGG
1 TGGTGATGGAGGTGGTGGAGACTTGTAAAATAAGGAGGA--GGGGTGAAGGTATGGTGGTGGAGG
156 AGATTTAAAACGTAAGGT-GTGGG-GA
64 AGATTTAAAACGTAAGGTGGTGGGAGA
* *
181 TGGTGATGGAGGTGGTGGAGACTTGTAACAT-ATGA-GAGGGGTGAAGGTGATGGTGGTGGAGGA
1 TGGTGATGGAGGTGGTGGAGACTTGTAAAATAAGGAGGAGGGGTGAAGGT-ATGGTGGTGGAGGA
* *
244 GATTTGTAAACGAAAGGT-G-GGGAGA
65 GATTT-AAAACGTAAGGTGGTGGGAGA
* * * *
269 TGGTGATGGAGGTGGTGGAGACTTGTAGACATATGGAGGTGGTGGTGAAGGGATGGTGGTGGAGG
1 TGGTGATGGAGGTGGTGGAGACTTGTA-AAATAAGGAGGAGG-GGTGAAGGTATGGTGGTGGAGG
334 AGATTT-AAACGT-AGGTGGTGGGAAGA
64 AGATTTAAAACGTAAGGTGGTGGG-AGA
* *
360 T-GTGATAGAGGTGGTGGAGACTTGTAAACATATGGAGGA-GGGTGAAGGTGATGGTGGTGGAGG
1 TGGTGATGGAGGTGGTGGAGACTTGTAAA-ATAAGGAGGAGGGGTGAAGGT-ATGGTGGTGGAGG
* * *
423 AGATTTGTAAAC-TAGGTGGTGGTGGGATA
64 AGATTT-AAAACGTA--AGGTGGTGGGAGA
* * * * *
452 TGATGATGGAGGTGGT-GAGACTTGT-AGATATGGAGGTGGTGGTGAAGGTGATGGTGGTGGTGG
1 TGGTGATGGAGGTGGTGGAGACTTGTAAAATAAGGAGGAGG-GGTGAAGGT-ATGGTGGTGGAGG
515 AG
64 AG
517 CTTGTAGACT
Statistics
Matches: 369, Mismatches: 28, Indels: 54
0.82 0.06 0.12
Matches are distributed among these distances:
84 6 0.02
85 4 0.01
86 2 0.01
87 24 0.07
88 82 0.22
89 34 0.09
90 50 0.14
91 56 0.15
92 76 0.21
93 30 0.08
94 5 0.01
ACGTcount: A:0.25, C:0.03, G:0.47, T:0.25
Consensus pattern (90 bp):
TGGTGATGGAGGTGGTGGAGACTTGTAAAATAAGGAGGAGGGGTGAAGGTATGGTGGTGGAGGAG
ATTTAAAACGTAAGGTGGTGGGAGA
Found at i:485 original size:180 final size:179
Alignment explanation
Indices: 1--516 Score: 644
Period size: 180 Copynumber: 2.9 Consensus size: 179
* * *
1 TGGTGATGGAGGTGGTGGA-AATTGTAGACATATGGAGTG-GTGGTGAAGGTAATGGTGGTGGAG
1 TGGTGATGGAGGTGGTGGAGACTTGTAAACATATGGAG-GAG-GGTGAAGGTGATGGTGGTGGAG
* * * * *
64 G-GATTTATAAACGTAAGGTGGTGGGGAGATGGTGATGGCGGTGGTGGAGACTTTTAAAATAAGG
64 GAGATTTGTAAAC-T-AGGTGGTGGGGAGATGGTGATGGAGGTGGTGGAGACTTGT-AGATATGG
* * *
128 AGGAGGGGGGTG-A-GGTTGGTGGTGGAGGAGATTTAAAACGTAAGGTGTGGGGA
126 AGG-TGGTGGTGAAGGGATGGTGGTGGAGGAGATTTAAAACGTAAGGTGTGGGGA
181 TGGTGATGGAGGTGGTGGAGACTTGT-AACATAT-GA-GAGGGGTGAAGGTGATGGTGGTGGAGG
1 TGGTGATGGAGGTGGTGGAGACTTGTAAACATATGGAGGA-GGGTGAAGGTGATGGTGGTGGAGG
* **
243 AGATTTGTAAACGA-AAGGTGGGGAGATGGTGATGGAGGTGGTGGAGACTTGTAGACATATGGAG
65 AGATTTGTAAACTAGGTGGTGGGGAGATGGTGATGGAGGTGGTGGAGACTTGTAG--ATATGGAG
307 GTGGTGGTGAAGGGATGGTGGTGGAGGAGATTT-AAACGT-AGGTGGTGGGAAGA
128 GTGGTGGTGAAGGGATGGTGGTGGAGGAGATTTAAAACGTAAGGT-GTGGG--GA
*
360 T-GTGATAGAGGTGGTGGAGACTTGTAAACATATGGAGGAGGGTGAAGGTGATGGTGGTGGAGGA
1 TGGTGATGGAGGTGGTGGAGACTTGTAAACATATGGAGGAGGGTGAAGGTGATGGTGGTGGAGGA
* *
424 GATTTGTAAACTAGGTGGTGGTGGGATATGATGATGGAGGTGGT-GAGACTTGTAGATATGGAGG
66 GATTTGTAAACTAGGTGGT-G-GGGAGATGGTGATGGAGGTGGTGGAGACTTGTAGATATGGAGG
*
488 TGGTGGTGAAGGTGATGGTGGTGGTGGAG
129 TGGTGGTGAAGG-GATGGTGGTGGAGGAG
517 CTTGTAGACT
Statistics
Matches: 297, Mismatches: 21, Indels: 35
0.84 0.06 0.10
Matches are distributed among these distances:
175 1 0.00
176 44 0.15
177 22 0.07
178 65 0.22
179 23 0.08
180 85 0.29
181 25 0.08
182 12 0.04
183 20 0.07
ACGTcount: A:0.25, C:0.03, G:0.47, T:0.25
Consensus pattern (179 bp):
TGGTGATGGAGGTGGTGGAGACTTGTAAACATATGGAGGAGGGTGAAGGTGATGGTGGTGGAGGA
GATTTGTAAACTAGGTGGTGGGGAGATGGTGATGGAGGTGGTGGAGACTTGTAGATATGGAGGTG
GTGGTGAAGGGATGGTGGTGGAGGAGATTTAAAACGTAAGGTGTGGGGA
Found at i:661 original size:16 final size:16
Alignment explanation
Indices: 636--666 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
626 GTGGTGAAGG
*
636 TGGTGGTGGGGGTGGA
1 TGGTGATGGGGGTGGA
652 TGGTGATGGGGGTGG
1 TGGTGATGGGGGTGG
667 TGAGTTAACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.00, G:0.68, T:0.26
Consensus pattern (16 bp):
TGGTGATGGGGGTGGA
Found at i:2580 original size:91 final size:87
Alignment explanation
Indices: 2484--2658 Score: 314
Period size: 91 Copynumber: 2.0 Consensus size: 87
2474 CAGGGGGGGA
2484 AAAAAAAGAGGAGACCATCTTGTAATCAGAGGAAAAAAAACGATTCCTTCAACATCTATTTTTCA
1 AAAAAAAGAGGAGACCATCTTGTAATCAGAGG-AAAAAAACGATTCCTTCAACATCTA-TTTTC-
2549 ACAAATAAAAAACAAATTTCAGAAAG
63 ACAAATAAAAAAC-AATTTCAGAAAG
2575 AAAAAAAGAGGAGACCATCTTGTAATCAGAGGAAAAAAACGATTCCTTCAACATCTATTTTCACA
1 AAAAAAAGAGGAGACCATCTTGTAATCAGAGGAAAAAAACGATTCCTTCAACATCTATTTTCACA
2640 AATAAAAAACAATTTCAGA
66 AATAAAAAACAATTTCAGA
2659 CGCAATAGAT
Statistics
Matches: 84, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
87 9 0.11
88 13 0.15
89 5 0.06
90 25 0.30
91 32 0.38
ACGTcount: A:0.50, C:0.16, G:0.12, T:0.22
Consensus pattern (87 bp):
AAAAAAAGAGGAGACCATCTTGTAATCAGAGGAAAAAAACGATTCCTTCAACATCTATTTTCACA
AATAAAAAACAATTTCAGAAAG
Found at i:5535 original size:44 final size:47
Alignment explanation
Indices: 5459--5556 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 47
5449 TTTCGTTTTT
* *
5459 TTTTTCGAATAAATGCATGCGAACTAGGTATCATGCGGTTAGG-TTTA
1 TTTTT-GAATAAATGCATGCAAACTAGATATCATGCGGTTAGGATTTA
* *
5506 TTTTTGAAT-AA-GCATGCAAATTAGATATCATGCGGTTAGGATTTC
1 TTTTTGAATAAATGCATGCAAACTAGATATCATGCGGTTAGGATTTA
5551 TTTTTG
1 TTTTTG
5557 TAGATAACAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
44 26 0.57
45 11 0.24
46 4 0.09
47 5 0.11
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (47 bp):
TTTTTGAATAAATGCATGCAAACTAGATATCATGCGGTTAGGATTTA
Found at i:15300 original size:23 final size:22
Alignment explanation
Indices: 15218--15335 Score: 64
Period size: 23 Copynumber: 5.4 Consensus size: 22
15208 AAGAAGAAAT
* *
15218 AAAAGAGAAAAGAAGAAAAAAGA
1 AAAAAAGAAGAGAA-AAAAAAGA
* * * *
15241 AAAAATGATGATGGAAAAAACGA
1 AAAAAAGAAGA-GAAAAAAAAGA
*
15264 AAAAAA-AA-TG-AAAAAAAGA
1 AAAAAAGAAGAGAAAAAAAAGA
**
15283 ATAAAAAGAAGAGAAAAAATGGA
1 A-AAAAAGAAGAGAAAAAAAAGA
* * *
15306 AAAAATA-AAAAGAGAAAAATGA
1 AAAAA-AGAAGAGAAAAAAAAGA
15328 AAAAAAGA
1 AAAAAAGA
15336 GAAATAAAAG
Statistics
Matches: 71, Mismatches: 17, Indels: 15
0.69 0.17 0.15
Matches are distributed among these distances:
19 9 0.13
20 6 0.08
21 3 0.04
22 23 0.32
23 28 0.39
24 2 0.03
ACGTcount: A:0.75, C:0.01, G:0.18, T:0.07
Consensus pattern (22 bp):
AAAAAAGAAGAGAAAAAAAAGA
Found at i:15322 original size:15 final size:16
Alignment explanation
Indices: 15265--15339 Score: 59
Period size: 17 Copynumber: 4.8 Consensus size: 16
15255 AAAAAACGAA
*
15265 AAAAAAATGAAAAAAAG
1 AAAAAAA-GAGAAAAAG
* *
15282 AATAAAA-AG-AAGAG
1 AAAAAAAGAGAAAAAG
*
15296 AAAAAATG-GAAAAA-
1 AAAAAAAGAGAAAAAG
*
15310 ATAAAAAGAGAAAAATG
1 AAAAAAAGAGAAAAA-G
15327 AAAAAAAGAGAAA
1 AAAAAAAGAGAAA
15340 TAAAAGGAGA
Statistics
Matches: 44, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
14 16 0.36
15 10 0.23
17 18 0.41
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (16 bp):
AAAAAAAGAGAAAAAG
Found at i:15340 original size:15 final size:14
Alignment explanation
Indices: 15306--15344 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
15296 AAAAAATGGA
*
15306 AAAAATAAAAAGAG
1 AAAAATAAAAAAAG
15320 AAAAATGAAAAAAAG
1 AAAAAT-AAAAAAAG
*
15335 AGAAATAAAA
1 AAAAATAAAA
15345 GGAGAGTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (14 bp):
AAAAATAAAAAAAG
Found at i:16737 original size:51 final size:51
Alignment explanation
Indices: 16678--17171 Score: 720
Period size: 51 Copynumber: 9.5 Consensus size: 51
16668 GATTGAGTCC
*
16678 CTCTGAAAGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACT
*
16729 CTCTGAAAGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACT
16780 CTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACT
16831 CTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACT
*
16882 CTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACT
* *
16933 CTCTGAAGGAATAGGGAGCGGACAAGTTCATTGAAGATTGTTCGAGTTCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGA---TT-GAGTCCTATACT
* * ** *
16988 CTCTGAAGGAATAGAGAGCGAACCCGTT-TTATGAAGATTGCTCGAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTCGT-TGAAGA-T--T-GAGTCCTATACT
17043 CTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACT
* ** *
17094 CTCTGAATGAATAGGGAGCGGACAAGTTTATTGAAGATTGTTCGAGTTCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGA---TT-GAGTCCTATACT
* *
17149 CTCTGAAGGAAGAGAGAGCGGAC
1 CTCTGAAGGAATAGGGAGCGGAC
17172 CCGTTTTATT
Statistics
Matches: 407, Mismatches: 24, Indels: 20
0.90 0.05 0.04
Matches are distributed among these distances:
51 283 0.70
52 1 0.00
53 1 0.00
54 6 0.01
55 115 0.28
56 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (51 bp):
CTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACT
Found at i:17023 original size:55 final size:55
Alignment explanation
Indices: 16678--17278 Score: 593
Period size: 51 Copynumber: 11.3 Consensus size: 55
16668 GATTGAGTCC
* *
16678 CTCTGAAAGAATAGGGAGCGGACAAGTTCGT-TGAAGA---TT-GAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTT-TTATGAAGATTGTTCGAGTCCTATACT
* *
16729 CTCTGAAAGAATAGGGAGCGGACAAGTTCGT-TGAAGA---TT-GAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTT-TTATGAAGATTGTTCGAGTCCTATACT
*
16780 CTCTGAAGGAATAGGGAGCGGACAAGTTCGT-TGAAGA---TT-GAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTT-TTATGAAGATTGTTCGAGTCCTATACT
*
16831 CTCTGAAGGAATAGGGAGCGGACAAGTTCGT-TGAAGA---TT-GAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTT-TTATGAAGATTGTTCGAGTCCTATACT
* *
16882 CTCTGAATGAATAGGGAGCGGACAAGTTCGT-TGAAGA---TT-GAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTT-TTATGAAGATTGTTCGAGTCCTATACT
* *
16933 CTCTGAAGGAATAGGGAGCGGACAAG-TTCATTGAAGATTGTTCGAGTTCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTTTA-TGAAGATTGTTCGAGTCCTATACT
* * ** *
16988 CTCTGAAGGAATAGAGAGCGAACCCGTTTTATGAAGATTGCTCGAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTTTATGAAGATTGTTCGAGTCCTATACT
*
17043 CTCTGAAGGAATAGGGAGCGGACAAGTTCGT-TGAAGA---TT-GAGTCCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTT-TTATGAAGATTGTTCGAGTCCTATACT
* *
17094 CTCTGAATGAATAGGGAGCGGACAAG-TTTATTGAAGATTGTTCGAGTTCTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTTTA-TGAAGATTGTTCGAGTCCTATACT
* * ** * * * *
17149 CTCTGAAGGAAGAGAGAGCGGACCCGTTTTATTAAACATTGTTCAAGTCTTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTTTA-TGAAGATTGTTCGAGTCCTATACT
* * * ** *
17205 CTCTGAATGAATAGAGAGCAGACACTTTTTATGAAGATTGTTCGAGTCTTATACT
1 CTCTGAAGGAATAGGGAGCGGACAAGTTTTATGAAGATTGTTCGAGTCCTATACT
17260 -TCCTGAAGGAATAGGGAGC
1 CT-CTGAAGGAATAGGGAGC
17279 AGGCTCGTCA
Statistics
Matches: 492, Mismatches: 42, Indels: 28
0.88 0.07 0.05
Matches are distributed among these distances:
49 1 0.00
50 2 0.00
51 276 0.56
52 1 0.00
54 5 0.01
55 153 0.31
56 54 0.11
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (55 bp):
CTCTGAAGGAATAGGGAGCGGACAAGTTTTATGAAGATTGTTCGAGTCCTATACT
Found at i:17114 original size:161 final size:160
Alignment explanation
Indices: 16717--17228 Score: 770
Period size: 161 Copynumber: 3.2 Consensus size: 160
16707 GTTGAAGATT
*
16717 GAGTCCTATACTCTCTGAAAGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTCT
1 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTCT
* *
16782 CTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGA---TT-GAGTCCTATACTCTCTGAAGGAAT
66 CTGAAGGAATAGGGAGCGGACAAGTTCATTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAAT
* ** *
16843 AGGGAGCGGACAAGTTCGT-TGAAGA-T-T-
131 AGAGAGCGGACCCGTT-TTATGAAGATTGTC
16870 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTCT
1 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTCT
16935 CTGAAGGAATAGGGAGCGGACAAGTTCATTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAAT
66 CTGAAGGAATAGGGAGCGGACAAGTTCATTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAAT
*
17000 AGAGAGCGAACCCGTTTTATGAAGATTGCTC
131 AGAGAGCGGACCCGTTTTATGAAGATTG-TC
*
17031 GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTCT
1 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTCT
* * *
17096 CTGAATGAATAGGGAGCGGACAAGTTTATTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAAG
66 CTGAAGGAATAGGGAGCGGACAAGTTCATTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAAT
* *
17161 AGAGAGCGGACCCGTTTTATTAAACATTGTTC
131 AGAGAGCGGACCCGTTTTA-TGAAGATTG-TC
* * * *
17193 AAGTCTTATACTCTCTGAATGAATAGAGAGCAGACA
1 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
17229 CTTTTTATGA
Statistics
Matches: 328, Mismatches: 21, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
153 98 0.30
156 3 0.01
157 41 0.12
158 1 0.00
160 1 0.00
161 144 0.44
162 40 0.12
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.27
Consensus pattern (160 bp):
GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTCT
CTGAAGGAATAGGGAGCGGACAAGTTCATTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAAT
AGAGAGCGGACCCGTTTTATGAAGATTGTC
Found at i:17654 original size:10 final size:10
Alignment explanation
Indices: 17639--17663 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
17629 CAAATTTCAG
17639 AAGAAAAAAA
1 AAGAAAAAAA
17649 AAGAAAAAAA
1 AAGAAAAAAA
17659 AAGAA
1 AAGAA
17664 GAGACCATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AAGAAAAAAA
Found at i:17728 original size:101 final size:101
Alignment explanation
Indices: 17554--17742 Score: 351
Period size: 101 Copynumber: 1.9 Consensus size: 101
17544 AACAGGGGGG
* * *
17554 AAAAAAGAGGAGACCATCTTGTAATCAGAGGGAAAAAATGATTCCTTCAACATCTATTTTTCAAC
1 AAAAAAGAAGAGACCATCTTGTAATCAGAGGAAAAAAACGATTCCTTCAACATCTATTTTTCAAC
17619 AAATAAAAAACAAATTTCAGAAGAAAAAAAAAGAAA
66 AAATAAAAAACAAATTTCAGAAGAAAAAAAAAGAAA
17655 AAAAAAGAAGAGACCATCTTGTAATCAGAGGAAAAAAACGATTCCTTCAACATCTATTTTTCAAC
1 AAAAAAGAAGAGACCATCTTGTAATCAGAGGAAAAAAACGATTCCTTCAACATCTATTTTTCAAC
17720 AAATAAAAAACAAATTTCAGAAG
66 AAATAAAAAACAAATTTCAGAAG
17743 CAATTAGATA
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
101 85 1.00
ACGTcount: A:0.52, C:0.14, G:0.12, T:0.22
Consensus pattern (101 bp):
AAAAAAGAAGAGACCATCTTGTAATCAGAGGAAAAAAACGATTCCTTCAACATCTATTTTTCAAC
AAATAAAAAACAAATTTCAGAAGAAAAAAAAAGAAA
Found at i:24420 original size:15 final size:15
Alignment explanation
Indices: 24400--24429 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24390 AACCTCATAA
24400 GTCATGTTGTCAGGT
1 GTCATGTTGTCAGGT
24415 GTCATGTTGTCAGGT
1 GTCATGTTGTCAGGT
24430 TCAACACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.33, T:0.40
Consensus pattern (15 bp):
GTCATGTTGTCAGGT
Found at i:25285 original size:36 final size:36
Alignment explanation
Indices: 25243--25318 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
25233 TTATAGCTAA
*
25243 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
25279 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
25315 AAAA
1 AAAA
25319 TCCCGAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (36 bp):
AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
Found at i:28711 original size:30 final size:30
Alignment explanation
Indices: 28661--28746 Score: 82
Period size: 31 Copynumber: 2.8 Consensus size: 30
28651 TGACCCCTAT
* *
28661 ATTTAAGATGAAATAATAATTTAACCATAAA
1 ATTT-AGATAAAATATTAATTTAACCATAAA
*
28692 ATTTAGATAAAATATTAATTTAATCCCTAAA
1 ATTTAGATAAAATATTAATTTAA-CCATAAA
* * * * *
28723 TTTTATACAAACTATTAGTTTAAC
1 ATTTAGATAAAATATTAATTTAAC
28747 TTAGGCCTGT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
30 18 0.39
31 28 0.61
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.38
Consensus pattern (30 bp):
ATTTAGATAAAATATTAATTTAACCATAAA
Found at i:28947 original size:24 final size:24
Alignment explanation
Indices: 28920--28966 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
28910 CATTCGTGAA
*
28920 CGTTCGGTTATGTTCGTTTATGTC
1 CGTTCGGTTATGTTCGCTTATGTC
28944 CGTTCGGTTATGTTCGCTTATGT
1 CGTTCGGTTATGTTCGCTTATGT
28967 TCATTCATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.49
Consensus pattern (24 bp):
CGTTCGGTTATGTTCGCTTATGTC
Found at i:28978 original size:24 final size:24
Alignment explanation
Indices: 28926--28981 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
28916 TGAACGTTCG
* * *
28926 GTTATGTTCGTTTATGTCCGTTCG
1 GTTATGTTCGCTTATGTCCATTCA
*
28950 GTTATGTTCGCTTATGTTCATTCA
1 GTTATGTTCGCTTATGTCCATTCA
*
28974 TTTATGTT
1 GTTATGTT
28982 TAACCCAATC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.12, C:0.14, G:0.20, T:0.54
Consensus pattern (24 bp):
GTTATGTTCGCTTATGTCCATTCA
Found at i:30086 original size:16 final size:16
Alignment explanation
Indices: 30063--30123 Score: 104
Period size: 16 Copynumber: 3.8 Consensus size: 16
30053 GGGTATCCAA
*
30063 CGTTTATGTTCATGTT
1 CGTTTATGTTCGTGTT
*
30079 CATTTATGTTCGTGTT
1 CGTTTATGTTCGTGTT
30095 CGTTTATGTTCGTGTT
1 CGTTTATGTTCGTGTT
30111 CGTTTATGTTCGT
1 CGTTTATGTTCGT
30124 TTATTTATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.10, C:0.13, G:0.21, T:0.56
Consensus pattern (16 bp):
CGTTTATGTTCGTGTT
Found at i:32162 original size:2 final size:2
Alignment explanation
Indices: 32155--32204 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
32145 ATAGAAAGAG
32155 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32197 AT AT AT AT
1 AT AT AT AT
32205 TCAAAAGGGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38887 original size:2 final size:2
Alignment explanation
Indices: 38880--38936 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
38870 AGACAAGAAC
38880 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
38922 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
38937 TTAATGTGTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:43433 original size:28 final size:28
Alignment explanation
Indices: 43390--43451 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
43380 ATCTCTGTTT
* *
43390 ACAATATGTCGTCGAG-CTAGTGTTTGAA
1 ACAATATGTCGACGAGTC-AGTGCTTGAA
*
43418 ACAATATGTTGACGAGTCAGTGCTTGAA
1 ACAATATGTCGACGAGTCAGTGCTTGAA
43446 AGCAAT
1 A-CAAT
43452 GGTGGTGTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 24 0.83
29 5 0.17
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (28 bp):
ACAATATGTCGACGAGTCAGTGCTTGAA
Found at i:44064 original size:15 final size:15
Alignment explanation
Indices: 44044--44100 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
44034 TTGTTTTCTA
44044 GAAAATGAATTACTG
1 GAAAATGAATTACTG
*
44059 GAAAATGAATTAAT-
1 GAAAATGAATTACTG
* *
44073 GAAATTTGAATT-CAG
1 GAAA-ATGAATTACTG
44088 GAAAATGAATTAC
1 GAAAATGAATTAC
44101 ATTTCTGGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 10 0.29
15 24 0.71
ACGTcount: A:0.49, C:0.05, G:0.18, T:0.28
Consensus pattern (15 bp):
GAAAATGAATTACTG
Found at i:44461 original size:23 final size:23
Alignment explanation
Indices: 44433--44477 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
44423 AGTGTTATAT
44433 TATATTTTAAAAATATTAATTAG
1 TATATTTTAAAAATATTAATTAG
* *
44456 TATATTTTAAATATATTTATTA
1 TATATTTTAAAAATATTAATTA
44478 AAATATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
TATATTTTAAAAATATTAATTAG
Found at i:44483 original size:23 final size:23
Alignment explanation
Indices: 44434--44502 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
44424 GTGTTATATT
* * **
44434 ATATTTTAAAAATATTAATTAGT
1 ATATTTTAAATATATTTATTAAA
44457 ATATTTTAAATATATTTATTAAA
1 ATATTTTAAATATATTTATTAAA
*
44480 ATATTATTAGAT-TATTATATTAA
1 ATATT-TTAAATATATT-TATTAA
44503 TATTAAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
23 28 0.72
24 11 0.28
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (23 bp):
ATATTTTAAATATATTTATTAAA
Found at i:44496 original size:19 final size:19
Alignment explanation
Indices: 44472--44542 Score: 54
Period size: 19 Copynumber: 3.6 Consensus size: 19
44462 TTAAATATAT
*
44472 TTATTAAAATATTATTAGA
1 TTATTAAAATATTATTAAA
* * *
44491 TTATTATATTAATATTAAA
1 TTATTAAAATATTATTAAA
* *
44510 TATATAAATAATATTATT-CA
1 T-TATTAA-AATATTATTAAA
44530 TTATTAAATATAT
1 TTATTAAA-ATAT
44543 ACAAAATTTA
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
18 1 0.03
19 25 0.64
20 6 0.15
21 7 0.18
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (19 bp):
TTATTAAAATATTATTAAA
Found at i:44506 original size:34 final size:34
Alignment explanation
Indices: 44427--44506 Score: 80
Period size: 35 Copynumber: 2.4 Consensus size: 34
44417 AGTAACAGTG
44427 TTATATT-ATATTTTAAAAATATTAATTAGTATA
1 TTATATTAATATTTTAAAAATATTAATTAGTATA
*
44460 TT-T-TAAATATATTTATTAAAATATT-ATTAG-ATTA
1 TTATATTAATAT-TTTA--AAAATATTAATTAGTA-TA
44494 TTATATTAATATT
1 TTATATTAATATT
44507 AAATATATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
31 1 0.03
32 5 0.13
33 7 0.18
34 9 0.24
35 10 0.26
36 6 0.16
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (34 bp):
TTATATTAATATTTTAAAAATATTAATTAGTATA
Found at i:44631 original size:8 final size:8
Alignment explanation
Indices: 44620--44698 Score: 55
Period size: 8 Copynumber: 10.5 Consensus size: 8
44610 TTGATTATTT
44620 TATTATAA
1 TATTATAA
44628 TATTA-AA
1 TATTATAA
*
44635 -AATATAA
1 TATTATAA
*
44642 TATTATAT
1 TATTATAA
44650 TATTATAAA
1 TATTAT-AA
44659 TATTAATAA
1 TATT-ATAA
44668 -A-TAT-A
1 TATTATAA
*
44673 TTTTA-AA
1 TATTATAA
*
44680 TATTTTAA
1 TATTATAA
44688 TATT-TAA
1 TATTATAA
44695 TATT
1 TATT
44699 TTGATGAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 17
0.70 0.09 0.21
Matches are distributed among these distances:
5 1 0.02
6 5 0.09
7 18 0.32
8 23 0.41
9 7 0.12
10 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (8 bp):
TATTATAA
Found at i:44645 original size:27 final size:32
Alignment explanation
Indices: 44613--44672 Score: 97
Period size: 30 Copynumber: 1.9 Consensus size: 32
44603 AATATAATTG
*
44613 ATTATTTTATTAT-AATATTAA-AAATATAAT
1 ATTATATTATTATAAATATTAATAAATATAAT
44643 ATTATATTATTATAAATATTAATAAATATA
1 ATTATATTATTATAAATATTAATAAATATA
44673 TTTTAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 12 0.44
31 8 0.30
32 7 0.26
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (32 bp):
ATTATATTATTATAAATATTAATAAATATAAT
Found at i:44648 original size:22 final size:23
Alignment explanation
Indices: 44620--44698 Score: 74
Period size: 22 Copynumber: 3.5 Consensus size: 23
44610 TTGATTATTT
44620 TATTATAATATTAAAAATA-TAA
1 TATTATAATATTAAAAATATTAA
* *
44642 TATTATATTATTATAAATATTAA
1 TATTATAATATTAAAAATATTAA
* * * *
44665 TA-AATATATTTTAAATATTTTAA
1 TATTATA-ATATTAAAAATATTAA
44688 TATT-TAATATT
1 TATTATAATATT
44699 TTGATGAAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
22 24 0.55
23 20 0.45
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TATTATAATATTAAAAATATTAA
Found at i:46222 original size:2 final size:2
Alignment explanation
Indices: 46211--46253 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
46201 TTAGCTACAG
46211 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
46251 TA T
1 TA T
46254 GGTACAACAC
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 37 0.95
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:61218 original size:17 final size:18
Alignment explanation
Indices: 61192--61225 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
61182 TAAACAAACG
61192 TATTTGATAAAAATAATA
1 TATTTGATAAAAATAATA
61210 TATTT-ATAAAAATAAT
1 TATTTGATAAAAATAAT
61226 TAAAATATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (18 bp):
TATTTGATAAAAATAATA
Found at i:61257 original size:25 final size:23
Alignment explanation
Indices: 61198--61257 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 23
61188 AACGTATTTG
*
61198 ATAAAAATAATATATTTATAAAA
1 ATAATAATAATATATTTATAAAA
*
61221 ATAATTAA-AATATACTCTTATAATA
1 ATAA-TAATAATATA-T-TTATAAAA
61246 ATAATAATAATA
1 ATAATAATAATA
61258 ATAATTTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
23 10 0.32
24 6 0.19
25 15 0.48
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (23 bp):
ATAATAATAATATATTTATAAAA
Found at i:71385 original size:21 final size:22
Alignment explanation
Indices: 71293--71408 Score: 84
Period size: 20 Copynumber: 5.6 Consensus size: 22
71283 AAAATGACCA
*
71293 ACAAATTCGCAACGCGAA-CTC
1 ACAAATTCGCAACGCGAATTTC
* * *
71314 -CAATTTCGCAACAC-AGTTTC
1 ACAAATTCGCAACGCGAATTTC
* * *
71334 -CAAATACGCAACACGAATAT-
1 ACAAATTCGCAACGCGAATTTC
** * *
71354 GTAAA-TCGCAACGGGATTTTC
1 ACAAATTCGCAACGCGAATTTC
71375 -CAAATTCGCAACGCGAATTTC
1 ACAAATTCGCAACGCGAATTTC
71396 ACAAATTCGCAAC
1 ACAAATTCGCAAC
71409 TTAGTTTCGG
Statistics
Matches: 72, Mismatches: 17, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
19 1 0.01
20 39 0.54
21 20 0.28
22 12 0.17
ACGTcount: A:0.37, C:0.28, G:0.14, T:0.22
Consensus pattern (22 bp):
ACAAATTCGCAACGCGAATTTC
Found at i:71542 original size:20 final size:20
Alignment explanation
Indices: 71483--71543 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
71473 TTGAAAATCG
*
71483 CATTGCGATAGTGTTGTTTA
1 CATTGCGATAGTATTGTTTA
* *
71503 CATTACGATAGTATTATTTA
1 CATTGCGATAGTATTGTTTA
*
71523 CATTGCGATAGTACTGTTTA
1 CATTGCGATAGTATTGTTTA
71543 C
1 C
71544 CTATATCGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.43
Consensus pattern (20 bp):
CATTGCGATAGTATTGTTTA
Found at i:71597 original size:96 final size:97
Alignment explanation
Indices: 71428--71611 Score: 271
Period size: 96 Copynumber: 1.9 Consensus size: 97
71418 GAAATTCGCG
** * * *
71428 TTGCGATAGTTGTGTTTACCTATATCGGTAATTAGTGTTGTGAATTTGAAAATCGCATTGCGATA
1 TTGCGATAGTACTGTTTACCTATATCGGTAAATAGCGTTGCGAATTTGAAAATCGCATTGCGATA
**
71493 GTGTTGTTTACATTACGATAGTATTATTTACA
66 GTACTGTTTACATTACGATAGTATTATTTACA
*
71525 TTGCGATAGTACTGTTTACCTATATC-GTAAATCGCGTTGCGAATTTGAAAATCGCATTGCGATA
1 TTGCGATAGTACTGTTTACCTATATCGGTAAATAGCGTTGCGAATTTGAAAATCGCATTGCGATA
* *
71589 TTACTGTTTACATTGCGATAGTA
66 GTACTGTTTACATTACGATAGTA
71612 CTGTTTACCA
Statistics
Matches: 77, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
96 53 0.69
97 24 0.31
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (97 bp):
TTGCGATAGTACTGTTTACCTATATCGGTAAATAGCGTTGCGAATTTGAAAATCGCATTGCGATA
GTACTGTTTACATTACGATAGTATTATTTACA
Found at i:71602 original size:20 final size:20
Alignment explanation
Indices: 71579--71619 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
71569 TTGAAAATCG
*
71579 CATTGCGATATTACTGTTTA
1 CATTGCGATAGTACTGTTTA
71599 CATTGCGATAGTACTGTTTA
1 CATTGCGATAGTACTGTTTA
71619 C
1 C
71620 CAGATATCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (20 bp):
CATTGCGATAGTACTGTTTA
Found at i:71672 original size:78 final size:76
Alignment explanation
Indices: 71510--71697 Score: 277
Period size: 78 Copynumber: 2.4 Consensus size: 76
71500 TTACATTACG
* * * * * *
71510 ATAGTATTATTTACATTGCGATAGTACTGTTTACCTATATCGTAAATCGCGTTGCGAATTTGAAA
1 ATAGTACTGTTTACATTGCGATAGTACTGTTTACCGATATCGTAAATAGAGTTGCGAATTTAAAA
*
71575 ATCGCATTGCG
66 ATCGCATTGCA
* *
71586 ATATTACTGTTTACATTGCGATAGTACTGTTTACCAGATATCGGTAATTAGAGTTGCGAATTTAA
1 ATAGTACTGTTTACATTGCGATAGTACTGTTTACC-GATATC-GTAAATAGAGTTGCGAATTTAA
71651 AAATCGCATTGCA
64 AAATCGCATTGCA
71664 ATAGTACTGTTTACATTGCGATAGTACTGTTTAC
1 ATAGTACTGTTTACATTGCGATAGTACTGTTTAC
71698 ATTGCGATAA
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
76 32 0.32
77 5 0.05
78 63 0.63
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (76 bp):
ATAGTACTGTTTACATTGCGATAGTACTGTTTACCGATATCGTAAATAGAGTTGCGAATTTAAAA
ATCGCATTGCA
Found at i:71680 original size:20 final size:20
Alignment explanation
Indices: 71657--71717 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
71647 TTAAAAATCG
*
71657 CATTGCAATAGTACTGTTTA
1 CATTGCGATAGTACTGTTTA
71677 CATTGCGATAGTACTGTTTA
1 CATTGCGATAGTACTGTTTA
* *
71697 CATTGCGATAATATTGTTTA
1 CATTGCGATAGTACTGTTTA
71717 C
1 C
71718 CTATATCAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (20 bp):
CATTGCGATAGTACTGTTTA
Found at i:71717 original size:174 final size:174
Alignment explanation
Indices: 71428--71829 Score: 592
Period size: 174 Copynumber: 2.3 Consensus size: 174
71418 GAAATTCGCG
** * * *
71428 TTGCGATAGTTGTGTTTACCTATATCGGTAATTAGTGTTGTGAATTTGAAAATCGCATTGCGATA
1 TTGCGATAGTACTGTTTACCTATATCGGTAATTAGAGTTGCGAATTTGAAAATCGCATTGCAATA
** * *
71493 GTGTTGTTTACATTACGATAGTATTATTTACATTGCGATAGTACTGTTTACCTATATC-GTAAAT
66 GTACTGTTTACATTACGATAGTACTATTTACATTGCGATAATACTGTTTACCTATATCAGTAAAT
* * * *
71557 CGCGTTGCGAATTTGAAAATCGCATTGCGATATTACTGTTTACA
131 AGCGTTGCGAATTTGAAAATCGCATTCCGATAGTACTGTTAACA
* *
71601 TTGCGATAGTACTGTTTACCAGATATCGGTAATTAGAGTTGCGAATTTAAAAATCGCATTGCAAT
1 TTGCGATAGTACTGTTTACC-TATATCGGTAATTAGAGTTGCGAATTTGAAAATCGCATTGCAAT
* * * *
71666 AGTACTGTTTACATTGCGATAGTACTGTTTACATTGCGATAATATTGTTTACCTATATCAGTAAT
65 AGTACTGTTTACATTACGATAGTACTATTTACATTGCGATAATACTGTTTACCTATATCAGTAAA
71731 TAGCGTTGCGAATTTGAAAATCGCATTCCGATAGTACTGTTAACA
130 TAGCGTTGCGAATTTGAAAATCGCATTCCGATAGTACTGTTAACA
*
71776 TTGCGATAGTATTGTTTACCTATATCGGTAATTA-AGGTTGCGAATTTGAAAATC
1 TTGCGATAGTACTGTTTACCTATATCGGTAATTAGA-GTTGCGAATTTGAAAATC
71830 ATGTTGCGAA
Statistics
Matches: 204, Mismatches: 22, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
173 19 0.09
174 121 0.59
175 64 0.31
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (174 bp):
TTGCGATAGTACTGTTTACCTATATCGGTAATTAGAGTTGCGAATTTGAAAATCGCATTGCAATA
GTACTGTTTACATTACGATAGTACTATTTACATTGCGATAATACTGTTTACCTATATCAGTAAAT
AGCGTTGCGAATTTGAAAATCGCATTCCGATAGTACTGTTAACA
Found at i:71765 original size:97 final size:97
Alignment explanation
Indices: 71579--72085 Score: 510
Period size: 97 Copynumber: 5.2 Consensus size: 97
71569 TTGAAAATCG
* * * * *
71579 CATTGCGATATTACTGTTTACATTGCGATAGTACTGTTTACCAGATATCGGTAATTAGAGTTGCG
1 CATTGCGATAGTACTGTTTACATTGCGATAATATTGTTTACC-GATATCAGTAATTAGCGTTGCG
* *
71644 AATTTAAAAATCGCATTGCAATAGTACTGTTTA
65 AATTTGAAAATCGCATTGCGATAGTACTGTTTA
*
71677 CATTGCGATAGTACTGTTTACATTGCGATAATATTGTTTACCTATATCAGTAATTAGCGTTGCGA
1 CATTGCGATAGTACTGTTTACATTGCGATAATATTGTTTACCGATATCAGTAATTAGCGTTGCGA
* *
71742 ATTTGAAAATCGCATTCCGATAGTACTGTTAA
66 ATTTGAAAATCGCATTGCGATAGTACTGTTTA
* * * * * ** * * *
71774 CATTGCGATAGTATTGTTTACCTATAT-CGGTAAT-TAAGGTT-GCGA-ATTTGAAAATCA-TGT
1 CATTGCGATAGTACTGTTTA-C-AT-TGCGATAATAT-TGTTTACCGATATCAG-TAATTAGCGT
71834 TGCGAATTTGAAAATCGCATTGCGATAGTACTGTTTA
61 TGCGAATTTGAAAATCGCATTGCGATAGTACTGTTTA
* * * * * * *
71871 CATTGTGATAGTATTGTTTACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGA
1 CATTGCGATAGTACTGTTTACATTGCGATAATATTGTTTACCGATATCAGTAATTAGCGTTGCGA
71936 ATTTGAAAATCGCATTGCGATAGTACTGTTTA
66 ATTTGAAAATCGCATTGCGATAGTACTGTTTA
* * * * ** * * *
71968 CATTGCGATAGTACTGTTTACCTATAT-CGGTAAT-TAGCGTT-GCGA-ATTTGAAAATCGCGTT
1 CATTGCGATAGTACTGTTTA-C-AT-TGCGATAATATTG-TTTACCGATATCAGTAATTAGCGTT
* *
72029 GCGACTTTGAAAATCGCATTGCGATAGTACTGTTAA
62 GCGAATTTGAAAATCGCATTGCGATAGTACTGTTTA
*
72065 AATTGCGATAGTACTGTTTAC
1 CATTGCGATAGTACTGTTTAC
72086 CTGTATCGGT
Statistics
Matches: 341, Mismatches: 54, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
94 1 0.00
95 10 0.03
96 8 0.02
97 249 0.73
98 51 0.15
99 20 0.06
100 2 0.01
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (97 bp):
CATTGCGATAGTACTGTTTACATTGCGATAATATTGTTTACCGATATCAGTAATTAGCGTTGCGA
ATTTGAAAATCGCATTGCGATAGTACTGTTTA
Found at i:71782 original size:20 final size:20
Alignment explanation
Indices: 71754--71791 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
71744 TTGAAAATCG
71754 CATTCCGATAGTACTGTTAA
1 CATTCCGATAGTACTGTTAA
* *
71774 CATTGCGATAGTATTGTT
1 CATTCCGATAGTACTGTT
71792 TACCTATATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.39
Consensus pattern (20 bp):
CATTCCGATAGTACTGTTAA
Found at i:71809 original size:77 final size:77
Alignment explanation
Indices: 71677--71829 Score: 254
Period size: 77 Copynumber: 2.0 Consensus size: 77
71667 GTACTGTTTA
* *
71677 CATTGCGATAGTACTGTTTACATTGCGATAATATTGTTTACCTATATCAGTAATT-AGCGTTGCG
1 CATTCCGATAGTACTGTTAACATTGCGATAATATTGTTTACCTATATCAGTAATTAAG-GTTGCG
71741 AATTTGAAAATCG
65 AATTTGAAAATCG
* *
71754 CATTCCGATAGTACTGTTAACATTGCGATAGTATTGTTTACCTATATCGGTAATTAAGGTTGCGA
1 CATTCCGATAGTACTGTTAACATTGCGATAATATTGTTTACCTATATCAGTAATTAAGGTTGCGA
71819 ATTTGAAAATC
66 ATTTGAAAATC
71830 ATGTTGCGAA
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 69 0.97
78 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.37
Consensus pattern (77 bp):
CATTCCGATAGTACTGTTAACATTGCGATAATATTGTTTACCTATATCAGTAATTAAGGTTGCGA
ATTTGAAAATCG
Found at i:71837 original size:20 final size:20
Alignment explanation
Indices: 71812--71849 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
71802 GGTAATTAAG
71812 GTTGCGAATTTGAAAATCAT
1 GTTGCGAATTTGAAAATCAT
71832 GTTGCGAATTTGAAAATC
1 GTTGCGAATTTGAAAATC
71850 GCATTGCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
GTTGCGAATTTGAAAATCAT
Found at i:71840 original size:194 final size:194
Alignment explanation
Indices: 71638--72259 Score: 847
Period size: 194 Copynumber: 3.2 Consensus size: 194
71628 GGTAATTAGA
* *
71638 GTTGCGAATTTAAAAATCGCATTGCAATAGTACTGTTTACATTGCGATAGTACTGTTTACATTGC
1 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTTACATTGCGATAGTACTGTTTACATTGC
* *
71703 GATAATATTGTTTACCTATATCAGTAATTAGCGTTGCGAATTTGAAAATCGCATTCCGATAGTAC
66 GATAATAATGTTTACCTATATCAGTAATTAGCGTTGCGAATTTGAAAATCGCATTGCGATAGTAC
* *
71768 TGTTAACATTGCGATAGTATTGTTTACCTATATCGGTAATTAAGGTTGCGAATTTGAAAATCAT
131 TGTTAACATTGCGATAGTACTGTTTACCTATATCGGTAATTAAGGTTGCGAATTTGAAAATCGT
* *
71832 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTTACATTGTGATAGTATTGTTTACATTGC
1 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTTACATTGCGATAGTACTGTTTACATTGC
* * * *
71897 GATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGAATTTGAAAATCGCATTGCGATAGTAC
66 GATAATAATGTTTACCTATATCAGTAATTAGCGTTGCGAATTTGAAAATCGCATTGCGATAGTAC
* *
71962 TGTTTACATTGCGATAGTACTGTTTACCTATATCGGTAATT-AGCGTTGCGAATTTGAAAATCGC
131 TGTTAACATTGCGATAGTACTGTTTACCTATATCGGTAATTAAG-GTTGCGAATTTGAAAATCGT
* * * *
72026 GTTGCGACTTTGAAAATCGCATTGCGATAGTACTGTTAAAATTGCGATAGTACTGTTTACCTGTA
1 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTTACATTGCGATAGTACTGTTTACAT-T-
* * * * * ** * * * * * * *
72091 TCGGTAATTAACG-TT-GCGA-ATTTGAAAATCGCATTGCGAATTTGTAAATTGCGTTGCGATAG
64 GCGATAA-TAATGTTTACCTATATCAGTAATTAGCGTTGCGAATTTGAAAATCGCATTGCGATAG
* * * *
72153 TACTGTTAATATTGCGATAGTACTGTTTACCTGTATCGGTAATTAAAGTTGCAAATTTGAAAATC
128 TACTGTTAACATTGCGATAGTACTGTTTACCTATATCGGTAATTAAGGTTGCGAATTTGAAAATC
72218 GT
193 GT
*
72220 GTTGCGAATTTGAAAATCTCATTGCGATAGTACTGTTTAC
1 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTTAC
72260 CTATATCGAT
Statistics
Matches: 377, Mismatches: 46, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
193 2 0.01
194 362 0.96
195 4 0.01
196 6 0.02
197 3 0.01
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (194 bp):
GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTTACATTGCGATAGTACTGTTTACATTGC
GATAATAATGTTTACCTATATCAGTAATTAGCGTTGCGAATTTGAAAATCGCATTGCGATAGTAC
TGTTAACATTGCGATAGTACTGTTTACCTATATCGGTAATTAAGGTTGCGAATTTGAAAATCGT
Found at i:71856 original size:20 final size:20
Alignment explanation
Indices: 71813--71858 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
71803 GTAATTAAGG
**
71813 TTGCGAATTTGAAAATCATG
1 TTGCGAATTTGAAAATCACA
*
71833 TTGCGAATTTGAAAATCGCA
1 TTGCGAATTTGAAAATCACA
71853 TTGCGA
1 TTGCGA
71859 TAGTACTGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.33
Consensus pattern (20 bp):
TTGCGAATTTGAAAATCACA
Found at i:71857 original size:174 final size:171
Alignment explanation
Indices: 71428--71891 Score: 578
Period size: 174 Copynumber: 2.7 Consensus size: 171
71418 GAAATTCGCG
* *
71428 TTGCGATAGT-TGTGTTTACCTATATCGGTAATTAGTGTTGTGAATTTGAAAATCGCATTGCGAT
1 TTGCGATAGTAT-TGTTTACCTATATCGGTAATTAGAGTTGCGAATTTGAAAATCGCATTGCGA-
* * * *
71492 AGTGTTG-TTTACATTACGATAGTATTATTTACATTGCGATAGTACTGTTTACCTATATCGTAAA
64 A-T-TTGATTTACATTGCGATAGTACTGTTTACATTGCGATAGTATTGTTTACCTATATCGTAAA
* * * *
71556 TCGCGTTGCGAATTTGAAAATCGCATTGCGATATTACTGTTTACA
127 TAGCGTTGCGAATTTGAAAATCGCATTCCGATAGTACTGTTAACA
* * *
71601 TTGCGATAGTACTGTTTACCAGATATCGGTAATTAGAGTTGCGAATTTAAAAATCGCATTGC-AA
1 TTGCGATAGTATTGTTTACC-TATATCGGTAATTAGAGTTGCGAATTTGAAAATCGCATTGCGAA
*
71665 TAGTACTG-TTTACATTGCGATAGTACTGTTTACATTGCGATAATATTGTTTACCTATATCAGTA
65 T--T--TGATTTACATTGCGATAGTACTGTTTACATTGCGATAGTATTGTTTACCTATATC-GTA
*
71729 ATTAGCGTTGCGAATTTGAAAATCGCATTCCGATAGTACTGTTAACA
125 AATAGCGTTGCGAATTTGAAAATCGCATTCCGATAGTACTGTTAACA
***
71776 TTGCGATAGTATTGTTTACCTATATCGGTAATTA-AGGTTGCGAATTTGAAAATCATGTTGCGAA
1 TTGCGATAGTATTGTTTACCTATATCGGTAATTAGA-GTTGCGAATTTGAAAATCGCATTGCGAA
* ** *
71840 TTTGAAAATCGCATTGCGATAGTACTGTTTACATTGTGATAGTATTGTTTAC
65 TTTG--ATTTACATTGCGATAGTACTGTTTACATTGCGATAGTATTGTTTAC
71892 ATTGCGATAG
Statistics
Matches: 254, Mismatches: 26, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
171 3 0.01
172 3 0.01
173 21 0.08
174 160 0.63
175 67 0.26
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.38
Consensus pattern (171 bp):
TTGCGATAGTATTGTTTACCTATATCGGTAATTAGAGTTGCGAATTTGAAAATCGCATTGCGAAT
TTGATTTACATTGCGATAGTACTGTTTACATTGCGATAGTATTGTTTACCTATATCGTAAATAGC
GTTGCGAATTTGAAAATCGCATTCCGATAGTACTGTTAACA
Found at i:71874 original size:20 final size:20
Alignment explanation
Indices: 71851--71911 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
71841 TTGAAAATCG
71851 CATTGCGATAGTACTGTTTA
1 CATTGCGATAGTACTGTTTA
* *
71871 CATTGTGATAGTATTGTTTA
1 CATTGCGATAGTACTGTTTA
71891 CATTGCGATAGTACTGTTTA
1 CATTGCGATAGTACTGTTTA
71911 C
1 C
71912 CTATATCGGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.43
Consensus pattern (20 bp):
CATTGCGATAGTACTGTTTA
Found at i:71971 original size:20 final size:20
Alignment explanation
Indices: 71948--71988 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
71938 TTGAAAATCG
71948 CATTGCGATAGTACTGTTTA
1 CATTGCGATAGTACTGTTTA
71968 CATTGCGATAGTACTGTTTA
1 CATTGCGATAGTACTGTTTA
71988 C
1 C
71989 CTATATCGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (20 bp):
CATTGCGATAGTACTGTTTA
Found at i:71972 original size:117 final size:115
Alignment explanation
Indices: 71760--71988 Score: 307
Period size: 117 Copynumber: 2.0 Consensus size: 115
71750 ATCGCATTCC
* *
71760 GATAGTACTGTTAACATTGCGATAGTATTGTTTACCTATATCGGTAATTAAGGTTGCGAATTTGA
1 GATAGTACTGTTAACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGAATTTGA
** * *
71825 AAATCATGTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTTACATTGT
66 AAATCACATTGCGAATCTG--AATCACATTGCGATAGTACTGTTTACATTGT
* *
71877 GATAGTATTGTTTACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGAATTTGA
1 GATAGTACTGTTAACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGAATTTGA
* * *
71942 AAATCGCATTGCGATAGTACTG-TTTACATTGCGATAGTACTGTTTAC
66 AAATCACATTGCGA-A-T-CTGAATCACATTGCGATAGTACTGTTTAC
71989 CTATATCGGT
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
117 94 0.96
118 1 0.01
119 1 0.01
120 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (115 bp):
GATAGTACTGTTAACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGAATTTGA
AAATCACATTGCGAATCTGAATCACATTGCGATAGTACTGTTTACATTGT
Found at i:72020 original size:77 final size:77
Alignment explanation
Indices: 71871--72032 Score: 288
Period size: 77 Copynumber: 2.1 Consensus size: 77
71861 GTACTGTTTA
* *
71871 CATTGTGATAGTATTGTTTACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGA
1 CATTGCGATAGTACTGTTTACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGA
71936 ATTTGAAAATCG
66 ATTTGAAAATCG
*
71948 CATTGCGATAGTACTGTTTACATTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGA
1 CATTGCGATAGTACTGTTTACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGA
72013 ATTTGAAAATCG
66 ATTTGAAAATCG
*
72025 CGTTGCGA
1 CATTGCGA
72033 CTTTGAAAAT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 81 1.00
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (77 bp):
CATTGCGATAGTACTGTTTACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGA
ATTTGAAAATCG
Found at i:72029 original size:20 final size:20
Alignment explanation
Indices: 72004--72052 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
71994 TCGGTAATTA
72004 GCGTTGCGAATTTGAAAATC
1 GCGTTGCGAATTTGAAAATC
*
72024 GCGTTGCGACTTTGAAAATC
1 GCGTTGCGAATTTGAAAATC
*
72044 GCATTGCGA
1 GCGTTGCGA
72053 TAGTACTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (20 bp):
GCGTTGCGAATTTGAAAATC
Found at i:72049 original size:77 final size:77
Alignment explanation
Indices: 71890--72062 Score: 242
Period size: 77 Copynumber: 2.2 Consensus size: 77
71880 AGTATTGTTT
71890 ACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGAATTTGAAAATCGCATTGCG
1 ACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGAATTTGAAAATCGCATTGCG
*** *
71955 ATAGTACTGTTT
66 ATAGTACAAATC
* *
71967 ACATTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGAAAATCGCGTTGCG
1 ACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGAATTTGAAAATCGCATTGCG
*
72032 ACT-TTGA-AAATC
66 A-TAGT-ACAAATC
*
72044 GCATTGCGATAGTACTGTT
1 ACATTGCGATAGTACTGTT
72063 AAAATTGCGA
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
77 84 0.98
78 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (77 bp):
ACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGAATTTGAAAATCGCATTGCG
ATAGTACAAATC
Found at i:72094 original size:97 final size:97
Alignment explanation
Indices: 71638--72256 Score: 680
Period size: 97 Copynumber: 6.4 Consensus size: 97
71628 GGTAATTAGA
* * *
71638 GTTGCGAATTTAAAAATCGCATTGCAATAGTACTGTTTACATTGCGATAGTACTGTTTA-C-AT-
1 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTAACATTGCGATAGTACTGTTTACCTATA
* ** * * ** * * *
71700 TGCGATAA-TATTGTTTACCTATATCAGTAATTAGC
66 T-CGGTAATTAACG-TT-GCGA-ATTTGAAAATCGC
* *
71735 GTTGCGAATTTGAAAATCGCATTCCGATAGTACTGTTAACATTGCGATAGTATTGTTTACCTATA
1 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTAACATTGCGATAGTACTGTTTACCTATA
* **
71800 TCGGTAATTAAGGTTGCGAATTTGAAAATCAT
66 TCGGTAATTAACGTTGCGAATTTGAAAATCGC
* * *
71832 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTTACATTGTGATAGTATTGTTTA-C-AT-
1 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTAACATTGCGATAGTACTGTTTACCTATA
* * * * ** * * **
71894 TGCGAT-AGT-ACTGTTTACCTATATCGGTAATTAAC
66 T-CGGTAATTAAC-G-TT-GCGA-ATTTGAAAATCGC
*
71929 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTTACATTGCGATAGTACTGTTTACCTATA
1 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTAACATTGCGATAGTACTGTTTACCTATA
*
71994 TCGGTAATTAGCGTTGCGAATTTGAAAATCGC
66 TCGGTAATTAACGTTGCGAATTTGAAAATCGC
* * *
72026 GTTGCGACTTTGAAAATCGCATTGCGATAGTACTGTTAAAATTGCGATAGTACTGTTTACCTGTA
1 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTAACATTGCGATAGTACTGTTTACCTATA
72091 TCGGTAATTAACGTTGCGAATTTGAAAATCGC
66 TCGGTAATTAACGTTGCGAATTTGAAAATCGC
* * * * * *
72123 ATTGCGAATTTGTAAATTGCGTTGCGATAGTACTGTTAATATTGCGATAGTACTGTTTACCTGTA
1 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTAACATTGCGATAGTACTGTTTACCTATA
* * *
72188 TCGGTAATTAAAGTTGCAAATTTGAAAATCGT
66 TCGGTAATTAACGTTGCGAATTTGAAAATCGC
*
72220 GTTGCGAATTTGAAAATCTCATTGCGATAGTACTGTT
1 GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTT
72257 TACCTATATC
Statistics
Matches: 445, Mismatches: 63, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
93 1 0.00
94 4 0.01
95 7 0.02
96 3 0.01
97 399 0.90
98 6 0.01
99 16 0.04
100 8 0.02
101 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (97 bp):
GTTGCGAATTTGAAAATCGCATTGCGATAGTACTGTTAACATTGCGATAGTACTGTTTACCTATA
TCGGTAATTAACGTTGCGAATTTGAAAATCGC
Found at i:72129 original size:20 final size:20
Alignment explanation
Indices: 72104--72149 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
72094 GTAATTAACG
72104 TTGCGAATTTGAAAATCGCA
1 TTGCGAATTTGAAAATCGCA
* * *
72124 TTGCGAATTTGTAAATTGCG
1 TTGCGAATTTGAAAATCGCA
72144 TTGCGA
1 TTGCGA
72150 TAGTACTGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (20 bp):
TTGCGAATTTGAAAATCGCA
Found at i:72214 original size:174 final size:174
Alignment explanation
Indices: 71871--72320 Score: 438
Period size: 174 Copynumber: 2.6 Consensus size: 174
71861 GTACTGTTTA
* * *
71871 CATTGTGATAGTATTGTTTACATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGA
1 CATTGCGATAGTATTGTTAAAATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGA
* *
71936 ATTTGAAAATCGCATTGCGATAGTACTGTTTACATTGCGATAGTACTGTTTACCTATATCGGTAA
66 ATTTGAAAATCGCATTGCGATAGTACTGTTTACATTGCGATAGTACTGTTTACATATATCGATAA
* * ** *** * *
72001 TTAGCGTTGCGAATTTGAAAATCGCGTTGCGACTTTGAAAATCG
131 GTAGCGTTCCGAATCGGAAAATAAAGTTGCAAATTTGAAAATCG
* *
72045 CATTGCGATAGTACTGTTAAAATTGCGATAGTACTGTTTACCTGTATCGGTAATTAACGTTGCGA
1 CATTGCGATAGTATTGTTAAAATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGA
* * *
72110 ATTTGAAAATCGCATTGCGA-A-T-TTGTAAATTGCGTTGCGATAGTACTG-TTA-ATAT-TGCG
66 ATTTGAAAATCGCATTGCGATAGTACTGT---TTACATTGCGATAGTACTGTTTACATATAT-CG
* * *
72169 AT-AGTA-CTGTTTACCTGTATCGGTAATTAAAGTTGCAAATTTGAAAATCG
127 ATAAGTAGC-G-TT-CC-GAATCGGAAAATAAAGTTGCAAATTTGAAAATCG
** * *
72219 TGTTGCGA-A-T-TTG-AAAATCTCATTGCGATAGTACTGTTTACCTATATCGATAATTAACGTT
1 CATTGCGATAGTATTGTTAAA----ATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTT
* * * *
72280 GCGGATTTGAAAATCACAATGCGATAGTACTCTTTACATTG
62 GCGAATTTGAAAATCGCATTGCGATAGTACTGTTTACATTG
72321 TGATTATGTG
Statistics
Matches: 226, Mismatches: 35, Indels: 30
0.78 0.12 0.10
Matches are distributed among these distances:
170 4 0.02
171 10 0.04
172 10 0.04
173 6 0.03
174 192 0.85
175 1 0.00
176 1 0.00
177 2 0.01
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.36
Consensus pattern (174 bp):
CATTGCGATAGTATTGTTAAAATTGCGATAGTACTGTTTACCTATATCGGTAATTAACGTTGCGA
ATTTGAAAATCGCATTGCGATAGTACTGTTTACATTGCGATAGTACTGTTTACATATATCGATAA
GTAGCGTTCCGAATCGGAAAATAAAGTTGCAAATTTGAAAATCG
Found at i:72229 original size:20 final size:20
Alignment explanation
Indices: 72200--72237 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
72190 GGTAATTAAA
72200 GTTGCAAATTTGAAAATCGT
1 GTTGCAAATTTGAAAATCGT
*
72220 GTTGCGAATTTGAAAATC
1 GTTGCAAATTTGAAAATC
72238 TCATTGCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
GTTGCAAATTTGAAAATCGT
Found at i:72244 original size:20 final size:20
Alignment explanation
Indices: 72201--72246 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
72191 GTAATTAAAG
* *
72201 TTGCAAATTTGAAAATCGTG
1 TTGCGAATTTGAAAATCGTA
72221 TTGCGAATTTGAAAATC-TCA
1 TTGCGAATTTGAAAATCGT-A
72241 TTGCGA
1 TTGCGA
72247 TAGTACTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.35
Consensus pattern (20 bp):
TTGCGAATTTGAAAATCGTA
Found at i:72320 original size:77 final size:77
Alignment explanation
Indices: 72145--72320 Score: 169
Period size: 77 Copynumber: 2.3 Consensus size: 77
72135 TAAATTGCGT
* * * * *
72145 TGCGATAGTACTGTTAATATTGCGATAGTACTGTTTACCTGTATCGGTAATTAAAGTTGCAAATT
1 TGCGATAGTACTCTTTACATTGCGATAGTACTGTTTACCTATATCGATAATTAAAGTTGCAAATT
****
72210 TGAAAATCGTGT
66 TGAAAATCACAA
* * * * **
72222 TGCGAATTTGAAAATC--T-CATTGCGATAGTACTGTTTACCTATATCGATAATTAACGTTGCGG
1 TGCG-A-TAG-TACTCTTTACATTGCGATAGTACTGTTTACCTATATCGATAATTAAAGTTGCAA
72284 ATTTGAAAATCACAA
63 ATTTGAAAATCACAA
72299 TGCGATAGTACTCTTTACATTG
1 TGCGATAGTACTCTTTACATTG
72321 TGATTATGTG
Statistics
Matches: 75, Mismatches: 18, Indels: 12
0.71 0.17 0.11
Matches are distributed among these distances:
74 3 0.04
75 2 0.03
76 2 0.03
77 63 0.84
78 1 0.01
79 2 0.03
80 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (77 bp):
TGCGATAGTACTCTTTACATTGCGATAGTACTGTTTACCTATATCGATAATTAAAGTTGCAAATT
TGAAAATCACAA
Found at i:73826 original size:7 final size:7
Alignment explanation
Indices: 73814--73848 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
73804 AACTCCCGAA
73814 TACAACT
1 TACAACT
73821 TACAACT
1 TACAACT
73828 TACAACT
1 TACAACT
73835 TACAACT
1 TACAACT
73842 TACAACT
1 TACAACT
73849 CATCATATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (7 bp):
TACAACT
Found at i:80052 original size:14 final size:14
Alignment explanation
Indices: 80033--80075 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
80023 ATTATTGATT
80033 TTTAAATTATTTTA
1 TTTAAATTATTTTA
80047 TTTAAATTATTTTA
1 TTTAAATTATTTTA
80061 -TTAAA-TATTTTA
1 TTTAAATTATTTTA
80073 TTT
1 TTT
80076 TTTTTACAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.25
13 7 0.25
14 14 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTAAATTATTTTA
Found at i:80997 original size:36 final size:36
Alignment explanation
Indices: 80950--81036 Score: 156
Period size: 36 Copynumber: 2.4 Consensus size: 36
80940 TCCACCTCTA
80950 GAATCTTTGAAGTTAGCATTAATGTTGTCAAAGATT
1 GAATCTTTGAAGTTAGCATTAATGTTGTCAAAGATT
*
80986 GAATCTCTGAAGTTAGCATTAATGTTGTCAAAGATT
1 GAATCTTTGAAGTTAGCATTAATGTTGTCAAAGATT
*
81022 GAATCTTTGATGTTA
1 GAATCTTTGAAGTTA
81037 CTCACTTCTC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 48 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (36 bp):
GAATCTTTGAAGTTAGCATTAATGTTGTCAAAGATT
Found at i:82769 original size:17 final size:17
Alignment explanation
Indices: 82747--82780 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
82737 CTCGAGTAAG
82747 ATGGTAACTAAAAGTAT
1 ATGGTAACTAAAAGTAT
82764 ATGGTAACTAAAAGTAT
1 ATGGTAACTAAAAGTAT
82781 CTGGAACTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.29
Consensus pattern (17 bp):
ATGGTAACTAAAAGTAT
Found at i:83477 original size:141 final size:145
Alignment explanation
Indices: 83269--83559 Score: 536
Period size: 143 Copynumber: 2.0 Consensus size: 145
83259 TCCTCCAAAG
83269 AATAAAATATAAGAAAGAGGATATTAGTACCTGATCAAACAATTGGTGCTGTGCAAGATACGTGG
1 AATAAAATATAAGAAAGAGGATATTAGTACCTGATCAAACAATTGGTGCTGTGCAAGATACGTGG
83334 GGACCTTACTTAT-C-GCCATTTGATTGAACCCTCTCAAGAAACTCGGAAAATGTAATATGCTCT
66 GGACCTTACTTATACAGCCATTTGATTGAACCCTCTCAAGAAACTCGGAAAATGTAATATGCTCT
83397 TGCTT-CAATCTGAA
131 TGCTTCCAATCTGAA
83411 AATAAAATATAAGAAAGAGGATATTAGTACC-GATCAAACAATTGGTGCTGTGCAAGATACGTGG
1 AATAAAATATAAGAAAGAGGATATTAGTACCTGATCAAACAATTGGTGCTGTGCAAGATACGTGG
*
83475 GGACCTTACTTCTACAGCCATTTGATTGAACCCTCTCAAGAAACTCGGAAAATGTAATATGCTCT
66 GGACCTTACTTATACAGCCATTTGATTGAACCCTCTCAAGAAACTCGGAAAATGTAATATGCTCT
83540 TGCTTCCAATCTGAA
131 TGCTTCCAATCTGAA
*
83555 CATAA
1 AATAA
83560 GTAATTTTTC
Statistics
Matches: 144, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
141 45 0.31
142 32 0.22
143 54 0.38
144 13 0.09
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (145 bp):
AATAAAATATAAGAAAGAGGATATTAGTACCTGATCAAACAATTGGTGCTGTGCAAGATACGTGG
GGACCTTACTTATACAGCCATTTGATTGAACCCTCTCAAGAAACTCGGAAAATGTAATATGCTCT
TGCTTCCAATCTGAA
Found at i:87043 original size:36 final size:36
Alignment explanation
Indices: 87002--87073 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
86992 GACTTTAACA
*
87002 AGCTCCGATTTCTAAGAACG-GACAAGAGAGTTTTTT
1 AGCTCCAATTTCTAAGAACGAGA-AAGAGAGTTTTTT
87038 AGCTCCAATTTCTAAGAACGAGAAAGAGAGTTTTTT
1 AGCTCCAATTTCTAAGAACGAGAAAGAGAGTTTTTT
87074 CTTTTACAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 32 0.94
37 2 0.06
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (36 bp):
AGCTCCAATTTCTAAGAACGAGAAAGAGAGTTTTTT
Found at i:89135 original size:21 final size:21
Alignment explanation
Indices: 89109--89154 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
89099 GAAACGCTGC
*
89109 CAAATGCCGTGAATTTCAAGT
1 CAAATGCCGTGAATTTAAAGT
*
89130 CAAATGTCGTGAATTTAAAGT
1 CAAATGCCGTGAATTTAAAGT
89151 CAAA
1 CAAA
89155 GCATCGACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (21 bp):
CAAATGCCGTGAATTTAAAGT
Found at i:89584 original size:29 final size:29
Alignment explanation
Indices: 89539--89650 Score: 197
Period size: 29 Copynumber: 3.9 Consensus size: 29
89529 ACCGTTGACC
89539 GGTGATATTCTGGGAATTAATTCGATTTT
1 GGTGATATTCTGGGAATTAATTCGATTTT
*
89568 GGTGATATTCTGAGAATTAATTCGATTTT
1 GGTGATATTCTGGGAATTAATTCGATTTT
*
89597 GGTGATATTCTGGGAATTAATTCAATTTT
1 GGTGATATTCTGGGAATTAATTCGATTTT
*
89626 GGTGATATTTTGGGAATTAATTCGA
1 GGTGATATTCTGGGAATTAATTCGA
89651 ATAGGGTGCT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 78 1.00
ACGTcount: A:0.27, C:0.06, G:0.23, T:0.44
Consensus pattern (29 bp):
GGTGATATTCTGGGAATTAATTCGATTTT
Found at i:90373 original size:22 final size:22
Alignment explanation
Indices: 90350--90423 Score: 71
Period size: 24 Copynumber: 3.4 Consensus size: 22
90340 TTTATCTGAT
*
90350 TTGACCTGGATTGATATGATAT
1 TTGACCTGGATTGATATGATAC
* *
90372 TTGACCTGAATTTTTATATGATAC
1 TTGACCTGGA--TTGATATGATAC
* *
90396 TTGACATGGACTGAT-TG-TAC
1 TTGACCTGGATTGATATGATAC
90416 TTGACCTG
1 TTGACCTG
90424 AATTATGTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
20 10 0.24
21 2 0.05
22 12 0.29
24 18 0.43
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.41
Consensus pattern (22 bp):
TTGACCTGGATTGATATGATAC
Found at i:96410 original size:12 final size:12
Alignment explanation
Indices: 96393--96420 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
96383 GTTTTGACCC
96393 GACCCGACCGTT
1 GACCCGACCGTT
96405 GACCCGACCGTT
1 GACCCGACCGTT
96417 GACC
1 GACC
96421 GTTGACCGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.43, G:0.25, T:0.14
Consensus pattern (12 bp):
GACCCGACCGTT
Found at i:96422 original size:19 final size:17
Alignment explanation
Indices: 96386--96427 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
96376 TTGACCGGTT
96386 TTGACCCGACCCGACCG
1 TTGACCCGACCCGACCG
*
96403 TTGACCCGACCGTTGACCG
1 TTGACCCGACC--CGACCG
96422 TTGACC
1 TTGACC
96428 GGTGATATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.50
19 11 0.50
ACGTcount: A:0.17, C:0.40, G:0.24, T:0.19
Consensus pattern (17 bp):
TTGACCCGACCCGACCG
Found at i:96487 original size:29 final size:29
Alignment explanation
Indices: 96428--96540 Score: 181
Period size: 29 Copynumber: 3.9 Consensus size: 29
96418 ACCGTTGACC
96428 GGTGATATTCTGGGAATTAATTCGATTTTT
1 GGTGATATTCTGGGAATTAATTCGA-TTTT
*
96458 GGTGATATTCTGGAAATTAATTCGATTTT
1 GGTGATATTCTGGGAATTAATTCGATTTT
*
96487 GGTGATATTCTGGGAATTAATTCAATTTT
1 GGTGATATTCTGGGAATTAATTCGATTTT
* *
96516 GGTGATGTTTTGGGAATTAATTCGA
1 GGTGATATTCTGGGAATTAATTCGA
96541 ATAGGGTGAT
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
29 53 0.69
30 24 0.31
ACGTcount: A:0.26, C:0.06, G:0.24, T:0.44
Consensus pattern (29 bp):
GGTGATATTCTGGGAATTAATTCGATTTT
Found at i:96548 original size:29 final size:29
Alignment explanation
Indices: 96428--96553 Score: 164
Period size: 29 Copynumber: 4.3 Consensus size: 29
96418 ACCGTTGACC
*
96428 GGTGATATTCTGGGAATTAATTCGATTTTT
1 GGTGATATTCTGGGAATTAATTCGA-ATTT
* *
96458 GGTGATATTCTGGAAATTAATTCGATTTT
1 GGTGATATTCTGGGAATTAATTCGAATTT
96487 GGTGATATTCTGGGAATTAATTC-AATTTT
1 GGTGATATTCTGGGAATTAATTCGAA-TTT
* * **
96516 GGTGATGTTTTGGGAATTAATTCGAATAG
1 GGTGATATTCTGGGAATTAATTCGAATTT
96545 GGTGATATT
1 GGTGATATT
96554 TGTGTAAAAT
Statistics
Matches: 86, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
28 1 0.01
29 59 0.69
30 26 0.30
ACGTcount: A:0.26, C:0.06, G:0.25, T:0.44
Consensus pattern (29 bp):
GGTGATATTCTGGGAATTAATTCGAATTT
Found at i:97280 original size:24 final size:24
Alignment explanation
Indices: 97254--97332 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 24
97244 TATCTGATTT
*
97254 TTGACCTGGATTCTGATATGATAT
1 TTGACCTGGATTCTGATATGATAC
* * *
97278 TTGACCTGAATTTTTATATGATAC
1 TTGACCTGGATTCTGATATGATAC
* * *
97302 TTGACATGGACTCTGATTTG-TAC
1 TTGACCTGGATTCTGATATGATAC
97325 TTGACCTG
1 TTGACCTG
97333 AATTATGTTT
Statistics
Matches: 44, Mismatches: 11, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
23 10 0.23
24 34 0.77
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (24 bp):
TTGACCTGGATTCTGATATGATAC
Found at i:97848 original size:17 final size:19
Alignment explanation
Indices: 97821--97859 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
97811 ATATCTGTAT
97821 TATTAATATTT-TGTTCTA
1 TATTAATATTTATGTTCTA
97839 TATT-ATATTTAATGTTCTA
1 TATTAATATTT-ATGTTCTA
97858 TA
1 TA
97860 AGTTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 4 0.21
19 9 0.47
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (19 bp):
TATTAATATTTATGTTCTA
Found at i:98939 original size:31 final size:31
Alignment explanation
Indices: 98903--98961 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
98893 AACTTAAAAG
* **
98903 AGTTTTGCAATACTGGGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
98934 AGTTTTACAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
98962 CCATACAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.42
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:99012 original size:22 final size:22
Alignment explanation
Indices: 98986--99028 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
98976 TAATAAATTA
*
98986 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATACATAT
99008 TTTAAAATAAATCAATACATA
1 TTTAAAATAAATCAATACATA
99029 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATACATAT
Found at i:99037 original size:22 final size:22
Alignment explanation
Indices: 98988--99036 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
98978 ATAAATTATT
* **
98988 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATACATATAA
99010 TAAAATAAATCAATACATACTAA
1 TAAAATAAATCAATACATA-TAA
99033 TAAA
1 TAAA
99037 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATACATATAA
Found at i:99040 original size:54 final size:56
Alignment explanation
Indices: 98976--99110 Score: 193
Period size: 58 Copynumber: 2.4 Consensus size: 56
98966 ACAACTACAA
* **
98976 TAATAAATTATTTAAAATAAATCAATCCAT-ATTTTAA-AATAAATCAATACATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAACTACAATAATAAATCAATACATAC
* *
99030 TAATAAATTATTTAAAATAAATCAATCTATACAACTACAATAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCAT--AACTACAATAATAAATCAATACATAC
99088 TAATAAATTATTTAAAATAAATC
1 TAATAAATTATTTAAAATAAATC
99111 CATTACATAT
Statistics
Matches: 72, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
54 29 0.40
57 4 0.06
58 39 0.54
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (56 bp):
TAATAAATTATTTAAAATAAATCAATCCATAACTACAATAATAAATCAATACATAC
Found at i:99046 original size:32 final size:32
Alignment explanation
Indices: 99008--99119 Score: 114
Period size: 32 Copynumber: 3.7 Consensus size: 32
98998 CAATCCATAT
99008 TTTAAAATAAATCAATACATACTAATAAATTA
1 TTTAAAATAAATCAATACATACTAATAAATTA
*
99040 TTTAAAATAAATCAAT-CTATAC-AACTACA--A
1 TTTAAAATAAATCAATAC-ATACTAA-TAAATTA
*
99070 --T--AATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATACATACTAATAAATTA
*
99098 TTTAAAATAAATCCATTACATA
1 TTTAAAATAAAT-CAATACATA
99120 TGGGAATAGG
Statistics
Matches: 65, Mismatches: 4, Indels: 21
0.72 0.04 0.23
Matches are distributed among these distances:
26 18 0.28
27 3 0.05
28 2 0.03
30 2 0.03
31 3 0.05
32 30 0.46
33 7 0.11
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (32 bp):
TTTAAAATAAATCAATACATACTAATAAATTA
Found at i:100113 original size:12 final size:11
Alignment explanation
Indices: 100094--100120 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
100084 TGACCTGTCA
100094 CCTTTTTTTTT
1 CCTTTTTTTTT
100105 CCTTTTTTTTT
1 CCTTTTTTTTT
100116 CCTTT
1 CCTTT
100121 CTGGCACCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (11 bp):
CCTTTTTTTTT
Found at i:103809 original size:8 final size:8
Alignment explanation
Indices: 103796--103835 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
103786 TCATTTTCAT
103796 AGAATTTG
1 AGAATTTG
103804 AGAATTT-
1 AGAATTTG
*
103811 AGAGTTTG
1 AGAATTTG
*
103819 GGAATTTG
1 AGAATTTG
103827 AGAATTTG
1 AGAATTTG
103835 A
1 A
103836 AAGATTGTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.35, C:0.00, G:0.28, T:0.38
Consensus pattern (8 bp):
AGAATTTG
Found at i:103818 original size:15 final size:15
Alignment explanation
Indices: 103795--103835 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
103785 CTCATTTTCA
103795 TAGAATTTGAGAATT
1 TAGAATTTGAGAATT
* *
103810 TAGAGTTTGGGAATT
1 TAGAATTTGAGAATT
103825 TGAGAATTTGA
1 T-AGAATTTGA
103836 AAGATTGTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.34, C:0.00, G:0.27, T:0.39
Consensus pattern (15 bp):
TAGAATTTGAGAATT
Found at i:104542 original size:127 final size:127
Alignment explanation
Indices: 103908--104907 Score: 1658
Period size: 127 Copynumber: 7.9 Consensus size: 127
103898 ATCGGAGTAT
103908 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCCC-GGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
103973 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
65 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
* * *
104036 TATTCACATGAAGGCGCGTTGCCGGGGGCGCGCCTTCCATTATTTCATTAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTT-CCCGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
104101 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAG--ATATCAGTACCTATTATTCTCA-
65 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATT-TCAC
**** *
104162 -GGGGACATGAAGGCGCGTTCCTGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCC-CGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
104226 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
65 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
*
104289 TATTCACATGAAGGCGC--CCCCGGGGCGCGCCTTCCATTA-TTCGTCAGAGAATATGTTATCAT
1 TATTCACATGAAGGCGCGTTCCCGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCAT
104351 TGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
66 TGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
* *
104413 TATTCATATGAAGGCGCGTTCCCGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTATCAT
1 TATTCACATGAAGGCGCGTTCCCGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCAT
* *
104478 TGCCCTATTATGTCACTCATGTCCTTCGGGGACACTAGATATATCAGTACATATTATTTCAC
66 TGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
* *
104540 TATTCACATGAAGGCGCGTCCCCGGGGGGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCAT
1 TATTCACATGAAGGCGCGTTCCCGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCAT
* *
104605 TGTCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAT
66 TGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
* *
104667 TATTCACATGAAGGCGCGTTCCCGGGGGGCGCCTTCCATTATTTCATCAGAGAATATGTTATCAT
1 TATTCACATGAAGGCGCGTTCCCGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCAT
*
104732 TG-CCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCTC
66 TGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
*** * *
104793 -AGGGGACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCATAGAATATGTTATC
1 TA-TTCACATGAAGGCGCGTTCCC-GGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATC
104857 ATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
64 ATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
104908 AATCAGGTAA
Statistics
Matches: 820, Mismatches: 39, Indels: 26
0.93 0.04 0.03
Matches are distributed among these distances:
124 103 0.13
125 113 0.14
126 119 0.15
127 327 0.40
128 156 0.19
129 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (127 bp):
TATTCACATGAAGGCGCGTTCCCGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCAT
TGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
Found at i:104790 original size:253 final size:256
Alignment explanation
Indices: 103906--104907 Score: 1688
Period size: 253 Copynumber: 4.0 Consensus size: 256
103896 TAATCGGAGT
*
103906 ATTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
1 ATTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTAT
103971 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
** * *
104036 TATTCACATGAAGGCGCGTTGCCGGGGGCGCGCCTTCCATTATTTCATTAGAGAATATGTTATCA
131 TATTCACATGAAGGCGCGTCCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
104101 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAG--ATATCAGTACCTATTATTCTC
196 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATT-TC
**** * *
104161 A--GGGGACATGAAGGCGCGTTCCTGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
1 ATTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTAT
104224 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
104289 TATTCACATGAAGGCGC--CCCC-GGGGCGCGCCTTCCATTA-TTCGTCAGAGAATATGTTATCA
131 TATTCACATGAAGGCGCGTCCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
104350 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
196 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* *
104411 ACTATTCATATGAAGGCGCGTTCCC-GGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTAT
1 ATTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTAT
* *
104475 CATTGCCCTATTATGTCACTCATGTCCTTCGGGGACACTAGATATATCAGTACATATTATTTCAC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
104540 TATTCACATGAAGGCGCGTCCCCGGGGG-GCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
131 TATTCACATGAAGGCGCGTCCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
*
104604 TTGTCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
196 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
104665 ATTATTCACATGAAGGCGCGTTCCCGGGGG-GCGCCTTCCATTATTTCATCAGAGAATATGTTAT
1 ATTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTAT
*
104729 CATTG-CCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
*** * * *
104793 -AGGGGACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCATAGAATATGTTATC
131 TA-TTCACATGAAGGCGCGTCCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATC
104857 ATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
195 ATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
104908 AATCAGGTAA
Statistics
Matches: 705, Mismatches: 31, Indels: 23
0.93 0.04 0.03
Matches are distributed among these distances:
249 59 0.08
250 21 0.03
251 138 0.20
252 17 0.02
253 234 0.33
254 231 0.33
255 5 0.01
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (256 bp):
ATTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTAT
CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
TATTCACATGAAGGCGCGTCCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
Found at i:105368 original size:33 final size:34
Alignment explanation
Indices: 105307--105406 Score: 139
Period size: 33 Copynumber: 3.0 Consensus size: 34
105297 AAATTTAATG
*
105307 TTAAATTTCGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
* * * *
105341 TTAAATTT-GAATAATATTATTTTTATTTTTATT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
*
105374 TTAAATTTCGAATAATATAATTTGTATTTTAAA
1 TTAAATTTCGAATAATATAATTTATATTTTAAA
105407 AACATTTATC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
33 28 0.50
34 28 0.50
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (34 bp):
TTAAATTTCGAATAATATAATTTATATTTTAAAT
Found at i:105888 original size:21 final size:21
Alignment explanation
Indices: 105858--105951 Score: 138
Period size: 21 Copynumber: 4.5 Consensus size: 21
105848 TATGGTATAA
*
105858 AACCCTGCGGGCTAGGCATGT
1 AACCCTGCGGGCTAGGAATGT
105879 AA-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGAATGT
*
105900 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGAATGT
105921 AACCCTGCGGGCTCA-GAATGT
1 AACCCTGCGGGCT-AGGAATGT
105942 AACCCTGCGG
1 AACCCTGCGG
105952 AGATGGTATA
Statistics
Matches: 67, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
20 3 0.04
21 61 0.91
22 3 0.04
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.18
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:107767 original size:17 final size:18
Alignment explanation
Indices: 107745--107787 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
107735 ATAATTATAT
*
107745 AAATATTATTTTA-ATAA
1 AAATATTATATTACATAA
*
107762 AAATATAATATTACATAA
1 AAATATTATATTACATAA
*
107780 ATATATTA
1 AAATATTA
107788 ATATAAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (18 bp):
AAATATTATATTACATAA
Found at i:107827 original size:33 final size:33
Alignment explanation
Indices: 107760--107829 Score: 81
Period size: 33 Copynumber: 2.1 Consensus size: 33
107750 TTATTTTAAT
* * *
107760 AAAAATATAATATTACATAAATATATTAATATA
1 AAAAATATAATATTACATAAAAATACTAACATA
107793 AAAAATAATAACTATTA-A-AAAAATACTAACATA
1 AAAAAT-ATAA-TATTACATAAAAATACTAACATA
107826 AAAA
1 AAAA
107830 TAAATTTCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
33 22 0.69
34 5 0.16
35 5 0.16
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (33 bp):
AAAAATATAATATTACATAAAAATACTAACATA
Found at i:107834 original size:18 final size:18
Alignment explanation
Indices: 107792--107834 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
107782 ATATTAATAT
*
107792 AAAAAATAATAACTATTA
1 AAAAAATAATAACTATAA
*
107810 AAAAAATACTAAC-ATAA
1 AAAAAATAATAACTATAA
107827 AAATAAAT
1 AAA-AAAT
107835 TTCTTACCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAAATAATAACTATAA
Found at i:108356 original size:14 final size:15
Alignment explanation
Indices: 108339--108372 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
108329 TTATAAGTTT
108339 TTATTTTA-TTAAAA
1 TTATTTTATTTAAAA
*
108353 TTATTTTATTTGAAA
1 TTATTTTATTTAAAA
108368 TTATT
1 TTATT
108373 GGACCTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
TTATTTTATTTAAAA
Found at i:109810 original size:228 final size:228
Alignment explanation
Indices: 109387--110498 Score: 1145
Period size: 228 Copynumber: 4.9 Consensus size: 228
109377 CACAAGGTGG
* * * * * *
109387 AGAGTAGACTCTTTCTGGATATTGTAATCTG-CAAGTGTCC-TGCCGTCCTCCAGCTGCTTGCCG
1 AGAGTCGACTCCTTCTGGATATTATAATCGGCCAAG-GTCCGT-CCATCCTCCAGCTGCTTCCCG
* * * * * * * * * * *
109450 GCGAAGATCAACCTCTGTTGGTCCGGAGGGATCCCTTCTTTATCCTGAATTTTAGCCTTCACGTT
64 GCAAAGATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTATCTTGAATCTTAGCCTTGACATT
* * * * * * * ** * * * * * * * * *
109515 GTCGATCGTATCCGAGCTCTCCACCCCGAGGGT-ACTTGTTTTTCCCGTCAAGGTTTTGACAAAT
129 ATCTATGGTGTCGGAGCTTTCGACTTCAAGAGTGA-TAGTCTTGCCGGTCAGGGTTTTCACGAAT
* * * * * *
109579 ATCTGCATACCGCCACGAAGCCTGAGGACCAGATGG
193 ATCTGCATACCACCGCGGAGACGGAGGACCAGATGA
* * * * * * * *
109615 AGAGTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGACCATCCTCCAGTTGTTTGCCGGC
1 AGAGTCGACTCCTTCTGGATATTATAATCGGCCAAGGTCCGTCCATCCTCCAGCTGCTTCCCGGC
* *
109680 AAAGATCAATCGCTGCTGATCCGGAGGGATGCCTTCTTTATCTTGAATCTTAGCTTTGACATTAT
66 AAAGATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTATCTTGAATCTTAGCCTTGACATTAT
109745 CTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATAGTCTTGCCGGTCAGGGTTTTCACGAATATC
131 CTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATAGTCTTGCCGGTCAGGGTTTTCACGAATATC
* *
109810 TGCATGCCACCGCGGAGACGGAGGACCAGATGC
196 TGCATACCACCGCGGAGACGGAGGACCAGATGA
* * * * * *
109843 AGAGTCGACTCCTTCTGGATGTTATAATCGG-CGAGTGTACGGCCGTCCTCCAGCTGCTTGCCGG
1 AGAGTCGACTCCTTCTGGATATTATAATCGGCCAAG-GTCCGTCCATCCTCCAGCTGCTTCCCGG
* * * *
109907 CGAAGATCAAACGCTGCTGATCCGGAGGGATGCCTTCTTTATCTTGAATCTTAGCTTTGACATTA
65 CAAAGATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTATCTTGAATCTTAGCCTTGACATTA
* * *
109972 TCTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATTGTCTTGCCGGTTAGGGTTTTGACGAATAT
130 TCTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATAGTCTTGCCGGTCAGGGTTTTCACGAATAT
*
110037 CTGCATGCCACCGCGGAGACGGAGGACCAGATGA
195 CTGCATACCACCGCGGAGACGGAGGACCAGATGA
* * * * * *
110071 AGAGTTGACTCCTTCTGGATATTATAGTCGGCGAGGGTCCTTCCATCTTCCAGCTGCTTCCCGGC
1 AGAGTCGACTCCTTCTGGATATTATAATCGGCCAAGGTCCGTCCATCCTCCAGCTGCTTCCCGGC
* * * * * *
110136 GAAA-ATCAACCTCTGCTGGTCCGTAGGAATCCCTTCTTTGTCTTGAATCTTAGCCTTGACATTA
66 -AAAGATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTATCTTGAATCTTAGCCTTGACATTA
* * * * * *
110200 TCAATTGTGTCGGAGCTTTCCACTTCAAGAGTGATAGTCTTGCCAGTCAGGGTTTTAACGAAGAT
130 TCTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATAGTCTTGCCGGTCAGGGTTTTCACGAATAT
*
110265 CTGCATACCACCTCGGAGACGGAGGACCAGATGA
195 CTGCATACCACCGCGGAGACGGAGGACCAGATGA
* * * * * * *
110299 AGAGTCGATTCCTTTTGGATATTATAGTCGGCGAGGGTCCTTCCATCTTCCAGCTGCTTCCCGGC
1 AGAGTCGACTCCTTCTGGATATTATAATCGGCCAAGGTCCGTCCATCCTCCAGCTGCTTCCCGGC
* * ** *
110364 GAAGATCAATCGCTGCTGGTCCACAGGAATGCCTTCTTTATCTTGAATCTTGGCCTTGACATTAT
66 AAAGATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTATCTTGAATCTTAGCCTTGACATTAT
* * * * * * * * * * * * *
110429 CTATAGTGTCTGAGCTTTCAACCTCTAGGGTGATTGTTTTTCCGGTGAGGGTCTTCACAAAGATC
131 CTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATAGTCTTGCCGGTCAGGGTTTTCACGAATATC
110494 TGCAT
196 TGCAT
110499 CTTCGACGAT
Statistics
Matches: 758, Mismatches: 119, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
227 5 0.01
228 745 0.98
229 8 0.01
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (228 bp):
AGAGTCGACTCCTTCTGGATATTATAATCGGCCAAGGTCCGTCCATCCTCCAGCTGCTTCCCGGC
AAAGATCAATCGCTGCTGATCCGGAGGAATGCCTTCTTTATCTTGAATCTTAGCCTTGACATTAT
CTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATAGTCTTGCCGGTCAGGGTTTTCACGAATATC
TGCATACCACCGCGGAGACGGAGGACCAGATGA
Found at i:110252 original size:456 final size:456
Alignment explanation
Indices: 109387--110498 Score: 1346
Period size: 456 Copynumber: 2.4 Consensus size: 456
109377 CACAAGGTGG
* * * * *
109387 AGAGTAGACTCTTTCTGGATATTGTAATCTGCAAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGC
1 AGAGTCGACTCCTTCTGGATATTATAATCGGCGAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGC
* * * * * * * * *
109452 GAAGATCAACCTCTGTTGGTCCGGAGGGATCCCTTCTTTATCCTGAATTTTAGCCTTCACGTTGT
66 GAAGATCAAACGCTGCTGGTCCGGAGGGATGCCTTCTTTATCTTGAATCTTAGCCTTGACATTAT
* * * * * * * * *
109517 CGATCGTATCCGAGCTCTCCACCCCGAGGGT-ACTTGTTTTTCCCGTCAAGGTTTTGACAAATAT
131 CTATAGTGTCCGAGCTTTCAACCTCAAGGGTGA-TTGTTTTTCCGGTCAGGGTTTTGACAAATAT
* * * * * * *
109581 CTGCATACCGCCACGAAGCCTGAGGACCAGATGGAGAGTCGATTCCTTTTGGATATTGTAATCGG
195 CTGCATACCACCACGAAGACGGAGGACCAGATGAAGAGTCGACTCCTTCTGGATATTATAATCGG
* * * * * * *
109646 CCAAGGTGCGACCATCCTCCAGTTGTTTGCCGGCAAAGATCAATCGCTGCTGATCCGGAGGGATG
260 CCAAGGTCCGACCATCCTCCAGCTGCTTCCCGGCAAAGATCAACCGCTGCTGATCCGGAGGAATC
* * *
109711 CCTTCTTTATCTTGAATCTTAGCTTTGACATTATCTATGGTGTCGGAGCTTTCGACTTCAAGAGT
325 CCTTCTTTATCTTGAATCTTAGCCTTGACATTATCAATGGTGTCGGAGCTTTCCACTTCAAGAGT
* * * *
109776 GATAGTCTTGCCGGTCAGGGTTTTCACGAATATCTGCATGCCACCGCGGAGACGGAGGACCAGAT
390 GATAGTCTTGCCAGTCAGGGTTTTAACGAAGATCTGCATACCACCGCGGAGACGGAGGACCAGAT
*
109841 GC
455 GA
* * *
109843 AGAGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTACGGCCGTCCTCCAGCTGCTTGCCGGC
1 AGAGTCGACTCCTTCTGGATATTATAATCGGCGAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGC
* *
109908 GAAGATCAAACGCTGCTGATCCGGAGGGATGCCTTCTTTATCTTGAATCTTAGCTTTGACATTAT
66 GAAGATCAAACGCTGCTGGTCCGGAGGGATGCCTTCTTTATCTTGAATCTTAGCCTTGACATTAT
* * * * * * * * *
109973 CTATGGTGTCGGAGCTTTCGACTTCAAGAGTGATTGTCTTGCCGGTTAGGGTTTTGACGAATATC
131 CTATAGTGTCCGAGCTTTCAACCTCAAGGGTGATTGTTTTTCCGGTCAGGGTTTTGACAAATATC
* * * * *
110038 TGCATGCCACCGCGGAGACGGAGGACCAGATGAAGAGTTGACTCCTTCTGGATATTATAGTCGGC
196 TGCATACCACCACGAAGACGGAGGACCAGATGAAGAGTCGACTCCTTCTGGATATTATAATCGGC
* * ** * * * *
110103 GAGGGTCCTTCCATCTTCCAGCTGCTTCCCGGCGAAA-ATCAACCTCTGCTGGTCCGTAGGAATC
261 CAAGGTCCGACCATCCTCCAGCTGCTTCCCGGC-AAAGATCAACCGCTGCTGATCCGGAGGAATC
* *
110167 CCTTCTTTGTCTTGAATCTTAGCCTTGACATTATCAATTGTGTCGGAGCTTTCCACTTCAAGAGT
325 CCTTCTTTATCTTGAATCTTAGCCTTGACATTATCAATGGTGTCGGAGCTTTCCACTTCAAGAGT
*
110232 GATAGTCTTGCCAGTCAGGGTTTTAACGAAGATCTGCATACCACCTCGGAGACGGAGGACCAGAT
390 GATAGTCTTGCCAGTCAGGGTTTTAACGAAGATCTGCATACCACCGCGGAGACGGAGGACCAGAT
110297 GA
455 GA
* * * * * * * *
110299 AGAGTCGATTCCTTTTGGATATTATAGTCGGCGAGGGTCCTTCCATCTTCCAGCTGCTTCCCGGC
1 AGAGTCGACTCCTTCTGGATATTATAATCGGCGAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGC
* ** * *
110364 GAAGATCAATCGCTGCTGGTCCACAGGAATGCCTTCTTTATCTTGAATCTTGGCCTTGACATTAT
66 GAAGATCAAACGCTGCTGGTCCGGAGGGATGCCTTCTTTATCTTGAATCTTAGCCTTGACATTAT
* * * * * *
110429 CTATAGTGTCTGAGCTTTCAACCTCTAGGGTGATTGTTTTTCCGGTGAGGGTCTTCACAAAGATC
131 CTATAGTGTCCGAGCTTTCAACCTCAAGGGTGATTGTTTTTCCGGTCAGGGTTTTGACAAATATC
110494 TGCAT
196 TGCAT
110499 CTTCGACGAT
Statistics
Matches: 550, Mismatches: 104, Indels: 4
0.84 0.16 0.01
Matches are distributed among these distances:
456 546 0.99
457 4 0.01
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (456 bp):
AGAGTCGACTCCTTCTGGATATTATAATCGGCGAGTGTCCTGCCGTCCTCCAGCTGCTTGCCGGC
GAAGATCAAACGCTGCTGGTCCGGAGGGATGCCTTCTTTATCTTGAATCTTAGCCTTGACATTAT
CTATAGTGTCCGAGCTTTCAACCTCAAGGGTGATTGTTTTTCCGGTCAGGGTTTTGACAAATATC
TGCATACCACCACGAAGACGGAGGACCAGATGAAGAGTCGACTCCTTCTGGATATTATAATCGGC
CAAGGTCCGACCATCCTCCAGCTGCTTCCCGGCAAAGATCAACCGCTGCTGATCCGGAGGAATCC
CTTCTTTATCTTGAATCTTAGCCTTGACATTATCAATGGTGTCGGAGCTTTCCACTTCAAGAGTG
ATAGTCTTGCCAGTCAGGGTTTTAACGAAGATCTGCATACCACCGCGGAGACGGAGGACCAGATG
A
Found at i:114171 original size:54 final size:54
Alignment explanation
Indices: 114108--114217 Score: 150
Period size: 54 Copynumber: 2.0 Consensus size: 54
114098 ATCACTTTGT
* * *
114108 ATAGATTGTTGATCCCCAT-GGATTGGCATGGGTAGTTGATCGCCATGGGTTGGC
1 ATAGATTGTTGATCACCATAGG-TTGGCATAGGTAGTTGATCACCATGGGTTGGC
* * *
114162 ATAGTTTGTTGATCACCATAGGTTGGCATAGGTGGTTGATCACCATGGTTTGGC
1 ATAGATTGTTGATCACCATAGGTTGGCATAGGTAGTTGATCACCATGGGTTGGC
114216 AT
1 AT
114218 GCGTTCTTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
54 47 0.96
55 2 0.04
ACGTcount: A:0.20, C:0.15, G:0.31, T:0.34
Consensus pattern (54 bp):
ATAGATTGTTGATCACCATAGGTTGGCATAGGTAGTTGATCACCATGGGTTGGC
Found at i:114227 original size:27 final size:26
Alignment explanation
Indices: 114066--114234 Score: 133
Period size: 27 Copynumber: 6.3 Consensus size: 26
114056 ATTTACACGT
* *
114066 TCACCATGGTTAGGCACAGGTTGCTGA
1 TCACCATGGTT-GGCATAGGTTGTTGA
** * * *
114093 TCACCATCACTTTGTATAGATTGTTGA
1 TCACCAT-GGTTGGCATAGGTTGTTGA
* * *
114120 TCCCCATGGATTGGCATGGGTAGTTGA
1 TCACCATGG-TTGGCATAGGTTGTTGA
* *
114147 TCGCCATGGGTTGGCATAGTTTGTTGA
1 TCACCAT-GGTTGGCATAGGTTGTTGA
*
114174 TCACCATAGGTTGGCATAGGTGGTTGA
1 TCACCAT-GGTTGGCATAGGTTGTTGA
*
114201 TCACCATGGTTTGGCAT-GCGTTCTTGA
1 TCACCATGG-TTGGCATAG-GTTGTTGA
*
114228 TGACCAT
1 TCACCAT
114235 CGCTTGATCT
Statistics
Matches: 111, Mismatches: 26, Indels: 10
0.76 0.18 0.07
Matches are distributed among these distances:
26 3 0.03
27 104 0.94
28 4 0.04
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (26 bp):
TCACCATGGTTGGCATAGGTTGTTGA
Found at i:116857 original size:14 final size:14
Alignment explanation
Indices: 116838--116880 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
116828 TATATTTATA
116838 ATAAATAAAATATT
1 ATAAATAAAATATT
116852 ATAAATAAAAGTATT
1 ATAAATAAAA-TATT
**
116867 -TTTATAAAATATT
1 ATAAATAAAATATT
116880 A
1 A
116881 GTTATCGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 4 0.16
14 17 0.68
15 4 0.16
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (14 bp):
ATAAATAAAATATT
Found at i:117987 original size:18 final size:18
Alignment explanation
Indices: 117955--117993 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
117945 TTTGAATTGA
117955 TTTCTTATATCTTTT-CT
1 TTTCTTATATCTTTTGCT
*
117972 TTTCTATATATGTTTTGCT
1 TTTCT-TATATCTTTTGCT
117991 TTT
1 TTT
117994 AAAAGACATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 9 0.47
19 5 0.26
ACGTcount: A:0.13, C:0.13, G:0.05, T:0.69
Consensus pattern (18 bp):
TTTCTTATATCTTTTGCT
Found at i:130216 original size:59 final size:59
Alignment explanation
Indices: 130057--130225 Score: 216
Period size: 59 Copynumber: 2.9 Consensus size: 59
130047 GTCGATTGAT
* * ** *
130057 CATTTTGAAACTTTTAATAGTCGAGGAACTCAACAAAGCAAGTCCTATAATCGGATGAT
1 CATTTTGTAACTTTTAATAGTCGAGGAACTCAACAAAGTAACACCTATAATCGGATGAC
** *
130116 CATTTTGTAACTTTTAATAGTC-AGGAACTCAACAAAGTAACACCTTATTGTTGGATGAC
1 CATTTTGTAACTTTTAATAGTCGAGGAACTCAACAAAGTAACACC-TATAATCGGATGAC
* *
130175 CATTTTGTAACTTTTAATAGTCGATG-ACTCAACAAAATAACATCCTATAAT
1 CATTTTGTAACTTTTAATAGTCGAGGAACTCAACAAAGTAACA-CCTATAAT
130226 ACATGATTTT
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
58 19 0.20
59 72 0.76
60 4 0.04
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.33
Consensus pattern (59 bp):
CATTTTGTAACTTTTAATAGTCGAGGAACTCAACAAAGTAACACCTATAATCGGATGAC
Found at i:131079 original size:9 final size:9
Alignment explanation
Indices: 131067--131107 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
131057 AATACACATA
131067 ATATTTTAC
1 ATATTTTAC
131076 ATATTTTAC
1 ATATTTTAC
131085 --ATTTTAC
1 ATATTTTAC
* *
131092 ATATTTAAA
1 ATATTTTAC
131101 ATATTTT
1 ATATTTT
131108 TAAAAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
7 7 0.26
9 20 0.74
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (9 bp):
ATATTTTAC
Found at i:134250 original size:3 final size:3
Alignment explanation
Indices: 134242--134271 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
134232 ATTTTTCTTC
134242 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
134272 GAAAAATAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:134702 original size:24 final size:24
Alignment explanation
Indices: 134675--134722 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
134665 CGTTCATTTA
*
134675 CGTTCGTGAACGTTCGATTATGTT
1 CGTTCATGAACGTTCGATTATGTT
* **
134699 CGTTTATGTTCGTTCGATTATGTT
1 CGTTCATGAACGTTCGATTATGTT
134723 TTTTTATGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.23, T:0.48
Consensus pattern (24 bp):
CGTTCATGAACGTTCGATTATGTT
Found at i:134728 original size:24 final size:24
Alignment explanation
Indices: 134685--134770 Score: 111
Period size: 24 Copynumber: 3.6 Consensus size: 24
134675 CGTTCGTGAA
134685 CGTTCGATTATGTTCGTTTATGTT
1 CGTTCGATTATGTTCGTTTATGTT
**
134709 CGTTCGATTATGTTTTTTTATGTT
1 CGTTCGATTATGTTCGTTTATGTT
* *
134733 CGTTCGACTATGCTCGTTTATGTT
1 CGTTCGATTATGTTCGTTTATGTT
*
134757 CATTC-ATTTATGTT
1 CGTTCGA-TTATGTT
134771 TAACCCAATC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
23 1 0.02
24 51 0.98
ACGTcount: A:0.14, C:0.14, G:0.17, T:0.55
Consensus pattern (24 bp):
CGTTCGATTATGTTCGTTTATGTT
Found at i:135382 original size:16 final size:16
Alignment explanation
Indices: 135361--135416 Score: 94
Period size: 16 Copynumber: 3.5 Consensus size: 16
135351 GTCTCCAACG
135361 TTTATGTTCGTGTTCA
1 TTTATGTTCGTGTTCA
135377 TTTATGTTCGTGTTCA
1 TTTATGTTCGTGTTCA
* *
135393 CTTATGTTCGTGTTCG
1 TTTATGTTCGTGTTCA
135409 TTTATGTT
1 TTTATGTT
135417 TGTTTATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.11, C:0.12, G:0.20, T:0.57
Consensus pattern (16 bp):
TTTATGTTCGTGTTCA
Found at i:135508 original size:16 final size:16
Alignment explanation
Indices: 135487--135529 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
135477 CAAAAAAAAT
135487 TGTTCGTTTATGTTCA
1 TGTTCGTTTATGTTCA
* *
135503 TGTTCGTGTT-CGTTTA
1 TGTTCGT-TTATGTTCA
135519 TGTTCGTTTAT
1 TGTTCGTTTAT
135530 TTTTTAAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
15 2 0.09
16 18 0.82
17 2 0.09
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCA
Found at i:135524 original size:10 final size:10
Alignment explanation
Indices: 135487--135529 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
135477 CAAAAAAAAT
135487 TGTTCGTTTA
1 TGTTCGTTTA
**
135497 TGTTCATGTTCG
1 TGTTC--GTTTA
135509 TGTTCGTTTA
1 TGTTCGTTTA
135519 TGTTCGTTTA
1 TGTTCGTTTA
135529 T
1 T
135530 TTTTTAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
10 19 0.70
12 8 0.30
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.58
Consensus pattern (10 bp):
TGTTCGTTTA
Found at i:138858 original size:20 final size:19
Alignment explanation
Indices: 138811--138849 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
138801 AATGTGAAAT
138811 ATATTTATCCTAAACTAAA
1 ATATTTATCCTAAACTAAA
*
138830 ATATTTATCCTAACCTAAA
1 ATATTTATCCTAAACTAAA
138849 A
1 A
138850 ATATATATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (19 bp):
ATATTTATCCTAAACTAAA
Found at i:177061 original size:104 final size:107
Alignment explanation
Indices: 176874--177085 Score: 394
Period size: 104 Copynumber: 2.0 Consensus size: 107
176864 CTGCATTAGG
176874 GAAAACAAATACAAAATTACCAATAGAAAGGTAATATAGAACATTCAAATACAATACACACCAGC
1 GAAAACAAATACAAAATTACCAATAGAAA-GTAATATAGAACATTCAAATACAATACACACCAGC
176939 TCTGCTCAACGAGAACTGCACAATCTGCTAGCTTTCTCCTCGT
65 TCTGCTCAACGAGAACTGCACAATCTGCTAGCTTTCTCCTCGT
176982 GAAAACAAATACAAAATTACCAATAGAAA-TAATATAGAACATTCAAATAC-A-ACACACCAGCT
1 GAAAACAAATACAAAATTACCAATAGAAAGTAATATAGAACATTCAAATACAATACACACCAGCT
177044 CTGCTCAACGAGAACTGCACAATCTGCTAGCTTTCTCCTCGT
66 CTGCTCAACGAGAACTGCACAATCTGCTAGCTTTCTCCTCGT
177086 TCGAAAGCTC
Statistics
Matches: 104, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
104 53 0.51
105 1 0.01
106 21 0.20
108 29 0.28
ACGTcount: A:0.42, C:0.25, G:0.11, T:0.22
Consensus pattern (107 bp):
GAAAACAAATACAAAATTACCAATAGAAAGTAATATAGAACATTCAAATACAATACACACCAGCT
CTGCTCAACGAGAACTGCACAATCTGCTAGCTTTCTCCTCGT
Found at i:179052 original size:17 final size:18
Alignment explanation
Indices: 179030--179076 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
179020 ATATGAAATT
179030 GATTTCAATTCC-TGACA
1 GATTTCAATTCCTTGACA
*
179047 GATTTCAATTCCTTTACA
1 GATTTCAATTCCTTGACA
*
179065 TATTTCAATTCC
1 GATTTCAATTCC
179077 CTCGTAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.28, C:0.23, G:0.06, T:0.43
Consensus pattern (18 bp):
GATTTCAATTCCTTGACA
Found at i:183717 original size:14 final size:15
Alignment explanation
Indices: 183693--183852 Score: 75
Period size: 14 Copynumber: 10.7 Consensus size: 15
183683 TTTAATCCTT
183693 TTATCTTTA-TTATTA
1 TTAT-TTTATTTATTA
183708 TTATTTTATTTATT-
1 TTATTTTATTTATTA
*
183722 TTATTTTATTTCTTA
1 TTATTTTATTTATTA
*
183737 TTTTTTTATTTA-TA
1 TTATTTTATTTATTA
** * **
183751 CGATATTACATA-TA
1 TTATTTTATTTATTA
* *
183765 TATATATATATATATTA
1 T-TAT-TTTATTTATTA
*
183782 -TATTTTATTTTTTAA
1 TTATTTTATTTATT-A
* *
183797 TCATTTTA-TTATTT
1 TTATTTTATTTATTA
183811 TTATTTCTTTATTT-TTA
1 TTA--T-TTTATTTATTA
*
183828 TTATTTTATTTCTT-
1 TTATTTTATTTATTA
183842 TTATTTCTATT
1 TTATTT-TATT
183853 ACTTTGTTTA
Statistics
Matches: 110, Mismatches: 22, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
14 49 0.45
15 36 0.33
16 12 0.11
17 11 0.10
18 2 0.02
ACGTcount: A:0.26, C:0.05, G:0.01, T:0.69
Consensus pattern (15 bp):
TTATTTTATTTATTA
Found at i:183723 original size:29 final size:29
Alignment explanation
Indices: 183691--183852 Score: 89
Period size: 29 Copynumber: 5.4 Consensus size: 29
183681 AATTTAATCC
183691 TTTTATCTTTA-TTATTATTATTTTATTTA
1 TTTTAT-TTTATTTATTATTATTTTATTTA
* *
183720 TTTTATTTTATTTCTTATTTTTTTATTTA
1 TTTTATTTTATTTATTATTATTTTATTTA
*** * ** * *
183749 TACGATATTACATA-TATATATATATATATA
1 TTTTATTTTATTTATTAT-TAT-TTTATTTA
* * *
183779 TTATATTTTATTTTTTAATCATTTTA-TTA
1 TTTTATTTTATTTATT-ATTATTTTATTTA
*
183808 TTTTTATTTCTTTATTT-TTATTATTTTATTTC
1 -TTTTA--T-TTTATTTATTATTATTTTATTTA
183840 TTTTATTTCTATT
1 TTTTATTT-TATT
183853 ACTTTGTTTA
Statistics
Matches: 97, Mismatches: 25, Indels: 22
0.67 0.17 0.15
Matches are distributed among these distances:
28 9 0.09
29 38 0.39
30 20 0.21
31 16 0.16
32 7 0.07
33 7 0.07
ACGTcount: A:0.25, C:0.05, G:0.01, T:0.69
Consensus pattern (29 bp):
TTTTATTTTATTTATTATTATTTTATTTA
Found at i:183826 original size:23 final size:23
Alignment explanation
Indices: 183777--183853 Score: 86
Period size: 23 Copynumber: 3.2 Consensus size: 23
183767 TATATATATA
183777 TATTATATTTTATTT-TTTAATCATTT
1 TATTAT-TTTTATTTCTTT-AT--TTT
183803 TATTATTTTTATTTCTTTATTTT
1 TATTATTTTTATTTCTTTATTTT
*
183826 TATTA-TTTTATTTCTTTTATTTC
1 TATTATTTTTATTTC-TTTATTTT
183849 TATTA
1 TATTA
183854 CTTTGTTTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
22 9 0.19
23 20 0.42
25 10 0.21
26 9 0.19
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (23 bp):
TATTATTTTTATTTCTTTATTTT
Found at i:183837 original size:31 final size:33
Alignment explanation
Indices: 183785--183849 Score: 91
Period size: 31 Copynumber: 2.0 Consensus size: 33
183775 TATATTATAT
183785 TTTATTTTTTAATCATTTTATTAT-TTTTATTTC
1 TTTATTTTTTAATCATTTTATT-TCTTTTATTTC
*
183818 TTTA-TTTTT-ATTATTTTATTTCTTTTATTTC
1 TTTATTTTTTAATCATTTTATTTCTTTTATTTC
183849 T
1 T
183850 ATTACTTTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 1 0.03
31 20 0.67
32 5 0.17
33 4 0.13
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.75
Consensus pattern (33 bp):
TTTATTTTTTAATCATTTTATTTCTTTTATTTC
Found at i:183843 original size:17 final size:16
Alignment explanation
Indices: 183782--183846 Score: 64
Period size: 17 Copynumber: 4.1 Consensus size: 16
183772 ATATATATTA
*
183782 TATTTTATTTTTTAAT
1 TATTTTATTTTTTTAT
*
183798 CATTTTATTATTTTTAT
1 TATTTTATT-TTTTTAT
183815 T-TCTTTA--TTTTTAT
1 TAT-TTTATTTTTTTAT
183829 TATTTTATTTCTTTTAT
1 TATTTTATTT-TTTTAT
183846 T
1 T
183847 TCTATTACTT
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
14 12 0.30
15 1 0.03
16 10 0.25
17 17 0.43
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (16 bp):
TATTTTATTTTTTTAT
Found at i:183962 original size:23 final size:22
Alignment explanation
Indices: 183932--183989 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
183922 CTCTCTTTTA
183932 TTTA-TTTAATTTATTTAATTT
1 TTTATTTTAATTTATTTAATTT
*
183953 TTTATCTTT-ATTGTATTTATTTT
1 TTTAT-TTTAATT-TATTTAATTT
183976 TTTATTTCTAATTT
1 TTTATTT-TAATTT
183990 CTAGTTTCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
21 4 0.13
22 5 0.16
23 19 0.61
24 3 0.10
ACGTcount: A:0.22, C:0.03, G:0.02, T:0.72
Consensus pattern (22 bp):
TTTATTTTAATTTATTTAATTT
Found at i:184111 original size:9 final size:9
Alignment explanation
Indices: 184099--184195 Score: 61
Period size: 9 Copynumber: 10.3 Consensus size: 9
184089 CCTATTTAAC
184099 TTTATTT-T
1 TTTATTTAT
184107 ATTTATTTAT
1 -TTTATTTAT
*
184117 TTTCTTTAT
1 TTTATTTAT
*
184126 CTTATCTTAT
1 TTTAT-TTAT
*
184136 CTTATTTAT
1 TTTATTTAT
* *
184145 TTCATTTGTTT
1 TTTA-TT-TAT
* *
184156 TTTAATTGT
1 TTTATTTAT
*
184165 TTTTTTTAT
1 TTTATTTAT
184174 TTTATTTAT
1 TTTATTTAT
*
184183 TTTCATTAAT
1 TTT-ATTTAT
184193 TTT
1 TTT
184196 TTCCTTCTAA
Statistics
Matches: 69, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
9 43 0.62
10 21 0.30
11 5 0.07
ACGTcount: A:0.19, C:0.06, G:0.02, T:0.73
Consensus pattern (9 bp):
TTTATTTAT
Found at i:184113 original size:4 final size:4
Alignment explanation
Indices: 184077--184184 Score: 51
Period size: 4 Copynumber: 24.8 Consensus size: 4
184067 TATTTTTTCC
* *
184077 TTTA -TTA TTTA TCCTA TTTAA CTTTA TTTTA TTTA TTTA TTTTC TTTA
1 TTTA TTTA TTTA T-TTA TTT-A -TTTA -TTTA TTTA TTTA -TTTA TTTA
* *
184125 TCTTA TCTTA TCTTA TTTA TTTCA TTTG TTT- TTTAA TTGT- TTTT TTTA
1 T-TTA T-TTA T-TTA TTTA TTT-A TTTA TTTA TTT-A TT-TA TTTA TTTA
184173 TTTTA TTTA TTT
1 -TTTA TTTA TTT
184185 TCATTAATTT
Statistics
Matches: 85, Mismatches: 7, Indels: 24
0.73 0.06 0.21
Matches are distributed among these distances:
3 7 0.08
4 38 0.45
5 36 0.42
6 4 0.05
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:184124 original size:28 final size:28
Alignment explanation
Indices: 184093--184146 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
184083 ATTTATCCTA
*
184093 TTTAACTTTATTTTAT-TTATTTATTTTC
1 TTTAAC-TTATCTTATCTTATTTATTTTC
*
184121 TTTATCTTATCTTATCTTATTTATTT
1 TTTAACTTATCTTATCTTATTTATTT
184147 CATTTGTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.70
Consensus pattern (28 bp):
TTTAACTTATCTTATCTTATTTATTTTC
Found at i:184125 original size:37 final size:37
Alignment explanation
Indices: 184084--184156 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 37
184074 TCCTTTATTA
184084 TTTATCCTAT-TTAACTTTATTTTATTT-ATTTATTTTC
1 TTTATCCTATCTTAAC-TTA-TTTATTTCATTTATTTTC
* * *
184121 TTTATCTTATCTTATCTTATTTATTTCATTTGTTTT
1 TTTATCCTATCTTAACTTATTTATTTCATTTATTTT
184157 TTAATTGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
36 7 0.23
37 20 0.65
38 4 0.13
ACGTcount: A:0.19, C:0.11, G:0.01, T:0.68
Consensus pattern (37 bp):
TTTATCCTATCTTAACTTATTTATTTCATTTATTTTC
Found at i:184137 original size:10 final size:9
Alignment explanation
Indices: 184081--184144 Score: 58
Period size: 9 Copynumber: 6.9 Consensus size: 9
184071 TTTTCCTTTA
184081 TTATTTATC
1 TTATTTATC
* *
184090 CTATTTAAC
1 TTATTTATC
184099 TTTATTTTAT-
1 -TTA-TTTATC
*
184109 TTATTTATT
1 TTATTTATC
*
184118 TTCTTTATC
1 TTATTTATC
184127 TTATCTTATC
1 TTAT-TTATC
184137 TTATTTAT
1 TTATTTAT
184145 TTCATTTGTT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
8 5 0.11
9 24 0.55
10 11 0.25
11 4 0.09
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (9 bp):
TTATTTATC
Found at i:184143 original size:19 final size:18
Alignment explanation
Indices: 184081--184144 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 18
184071 TTTTCCTTTA
* *
184081 TTATTTATCCTATTTAAC
1 TTATTTATCTTATTTATC
*
184099 TTTATTTTAT-TTATTTATT
1 -TTA-TTTATCTTATTTATC
*
184118 TTCTTTATCTTATCTTATC
1 TTATTTATCTTAT-TTATC
184137 TTATTTAT
1 TTATTTAT
184145 TTCATTTGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
17 5 0.14
18 6 0.17
19 20 0.56
20 5 0.14
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (18 bp):
TTATTTATCTTATTTATC
Done.