genome.fa.s916.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000916.1 Hibiscus syriacus cultivar Beakdansim tig00001829_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93407

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1476--1596	49	2.3	54	75	20	139	23	4	12	59	1.50
1504--1608	50	2.1	50	92	1	176	25	5	13	55	1.60
4621--4700	7	10.5	8	77	17	66	77	0	13	8	0.99
4621--4700	16	5.2	16	75	10	69	77	0	13	8	0.99
5924--6202	44	6.4	43	85	3	355	35	24	22	17	1.96
10098--10164	25	2.8	24	82	8	84	31	7	1	59	1.34
11708--11825	35	3.3	36	75	3	112	32	18	11	38	1.86
11677--11825	72	2.1	73	87	3	212	31	17	12	38	1.86
12057--12181	66	1.9	66	91	3	207	28	15	16	40	1.89
12180--12813	139	4.5	140	88	2	927	29	29	14	26	1.95
12180--12892	279	2.6	278	84	4	945	30	28	14	26	1.95
12180--12890	139	5.1	140	85	5	870	30	28	14	26	1.95
13141--13174	3	11.3	3	100	0	68	32	0	0	67	0.91
14281--14347	2	33.5	2	100	0	134	49	0	0	50	1.00
14483--14538	28	2.0	28	92	0	94	25	19	8	46	1.79
14512--14903	81	4.9	81	87	1	545	28	22	12	37	1.90
15228--15374	56	2.7	54	87	8	201	32	22	10	34	1.89
21088--21116	15	1.9	15	100	0	58	55	3	0	41	1.17
21112--21160	26	1.9	25	83	4	62	69	4	2	24	1.17
27469--27508	17	2.3	18	91	4	64	37	0	0	62	0.95
27499--27524	6	4.3	6	100	0	52	19	0	0	80	0.71
27469--27534	18	3.7	18	77	4	62	31	0	3	65	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27546--27602	27	2.0	29	83	12	75	40	1	0	57	1.09
28973--29036	23	2.8	22	83	4	74	26	26	25	21	2.00
29052--29269	103	2.1	103	93	1	375	37	23	13	25	1.91
35887--35955	23	3.0	22	80	4	75	26	26	24	23	2.00
35963--36186	103	2.2	101	91	3	369	36	25	12	25	1.92
36054--36102	21	2.4	21	80	10	57	40	20	10	28	1.85
36735--36777	21	2.0	21	90	0	68	16	23	27	32	1.96
45859--45885	10	2.7	10	100	0	54	88	0	11	0	0.50
47727--47915	36	5.2	36	85	1	243	38	17	19	23	1.93
47727--47915	73	2.6	72	83	1	252	38	17	19	23	1.93
47934--48500	55	10.3	54	83	4	557	31	18	21	27	1.97
47934--48500	110	5.2	110	85	2	638	31	18	21	27	1.97
48022--48496	165	2.9	165	86	1	657	31	19	21	28	1.97
48759--48794	2	18.0	2	100	0	72	50	0	0	50	1.00
48847--48881	17	2.1	16	94	5	61	22	0	22	54	1.45
48836--48890	17	2.9	21	72	27	59	23	3	18	54	1.59
48904--49013	2	55.0	2	96	0	202	49	0	0	49	1.13
50857--50963	54	2.0	54	92	3	180	29	26	24	19	1.98
53917--54095	91	2.0	91	96	0	331	24	22	16	36	1.94
59031--59239	104	2.0	103	99	0	409	23	29	13	33	1.93
70637--70717	41	2.0	41	82	4	101	49	6	2	41	1.41
70685--70719	16	2.2	16	94	0	61	51	5	0	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81589--81618	16	1.9	15	93	6	51	36	0	0	63	0.95
82998--83045	21	2.3	21	96	3	89	39	14	8	37	1.76
83003--83249	136	1.8	135	88	4	381	39	10	15	34	1.83
83150--83206	21	2.7	21	97	0	105	38	10	19	31	1.86
84149--84214	28	2.4	28	92	0	114	27	21	24	27	1.99
84202--84253	13	3.7	13	72	18	50	26	23	19	30	1.98
92705--92746	21	2.0	22	85	4	59	35	7	0	57	1.26

Tables:   1

The End!