Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009163.1 Hibiscus syriacus cultivar Beakdansim tig00112698_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103450

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12336--12380
9
5.3
9
75
24
53
80
0
11
8
0.92
12342--12391
17
2.8
18
93
6
84
80
0
12
8
0.92
12313--12404
23
4.0
22
76
16
71
78
1
11
8
1.02
12336--12397
25
2.4
28
79
20
80
79
0
11
9
0.95
12345--12403
12
4.9
12
74
17
52
79
0
11
8
0.93
12317--12380
33
1.9
34
87
9
96
78
1
10
9
1.04
12342--12403
17
3.4
17
85
12
79
80
0
11
8
0.90
13402--13452
18
2.8
18
70
18
52
47
13
19
19
1.83
13253--13683
221
2.0
220
87
5
629
36
15
21
26
1.94
15508--15592
20
4.5
19
69
25
63
24
5
1
68
1.19
15491--15591
35
2.7
37
82
10
100
24
5
1
67
1.24
15626--15672
22
2.1
22
84
7
60
25
2
4
68
1.19
16658--16770
2
56.5
2
100
0
226
49
0
0
50
1.00
32930--33119
45
4.2
45
91
2
274
12
7
48
32
1.68
33308--33362
27
2.0
27
100
0
110
29
9
40
21
1.84
35918--35943
2
13.0
2
100
0
52
50
0
0
50
1.00
37738--37779
22
1.9
22
85
0
57
21
28
26
23
1.99
37820--37874
22
2.5
22
88
2
85
20
43
21
14
1.87
47371--47402
16
2.1
16
88
11
50
28
6
28
37
1.81
52783--52844
3
21.0
3
75
21
51
64
0
0
35
0.94
52779--52857
17
4.8
16
73
18
63
63
0
1
35
1.03
52767--52858
48
1.9
48
82
8
116
63
1
1
34
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65577--65605
13
2.2
13
100
0
58
55
0
0
44
0.99
73578--73618
2
20.5
2
94
0
73
51
2
0
46
1.14
74004--74089
43
2.0
43
100
0
172
34
6
23
34
1.82
87345--87374
15
2.0
15
100
0
60
60
0
0
40
0.97
95836--95878
22
1.9
23
85
4
61
41
4
4
48
1.44
98377--98435
23
2.6
23
88
0
82
40
16
5
37
1.71
98785--98853
21
3.3
21
82
8
86
39
23
4
33
1.74
99231--99287
23
2.5
23
88
0
78
38
17
5
38
1.72
99632--99696
21
3.3
21
79
12
66
40
20
4
35
1.73
100047--100115
20
3.3
21
79
15
72
39
23
2
34
1.70
100468--100532
23
2.8
23
81
9
87
40
21
4
33
1.74
98200--101164
419
7.0
425
93
5
4966
39
12
7
40
1.71
100891--100958
23
3.2
23
72
20
65
41
20
4
33
1.72
101313--101346
16
2.2
16
89
5
52
26
17
5
50
1.69
102523--102613
12
7.3
13
79
13
86
19
32
7
39
1.80
102526--102575
15
3.5
15
74
20
54
20
34
8
38
1.82
102544--102613
6
11.7
6
81
0
77
18
32
8
40
1.81
102544--102613
24
2.9
24
89
0
104
18
32
8
40
1.81
102548--102622
24
3.1
24
84
0
78
17
33
10
38
1.84

Tables:   1

The End!