Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009168.1 Hibiscus syriacus cultivar Beakdansim tig00112715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73156

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1535--1602
20
3.4
20
65
15
59
36
17
13
32
1.89
1512--1603
40
2.3
40
94
1
159
35
16
14
33
1.88
2225--2289
2
32.5
2
93
0
112
47
3
0
49
1.17
10465--10895
182
2.4
181
86
2
596
40
15
15
28
1.88
10722--11219
162
3.1
162
91
0
800
40
14
17
28
1.88
13237--13289
21
2.4
23
84
12
67
47
0
3
49
1.19
13666--13709
21
2.1
21
95
0
79
40
11
34
13
1.81
13747--13842
33
2.9
33
93
0
156
32
0
41
26
1.56
14026--14064
18
2.2
18
85
0
51
58
0
30
10
1.31
15620--15668
19
2.6
19
96
0
89
32
2
10
55
1.45
15979--16011
15
2.2
15
94
0
57
36
21
15
27
1.93
16034--16613
200
2.9
198
87
4
817
36
14
17
32
1.90
19241--19315
31
2.4
31
97
0
141
22
12
32
33
1.91
22600--22649
26
2.0
25
88
11
75
68
4
12
16
1.35
22899--22961
28
2.3
26
75
19
65
19
22
3
55
1.57
27335--27375
19
2.1
20
86
4
57
68
0
7
24
1.15
29667--29694
14
2.0
14
100
0
56
57
21
14
7
1.61
45922--46047
40
3.4
38
75
13
129
49
2
7
41
1.43
45908--46137
67
3.4
67
76
16
222
46
3
6
43
1.43
46078--46137
31
1.9
31
89
0
93
46
1
5
46
1.34
46178--46245
5
14.0
5
76
4
50
29
5
1
63
1.27
47012--47045
9
3.8
9
100
0
68
79
0
0
20
0.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47006--47056
5
10.6
5
76
16
54
78
0
3
17
0.90
50598--50639
18
2.3
18
100
0
84
30
38
19
11
1.88
59542--59587
2
23.0
2
95
0
83
50
2
0
47
1.13
62653--62694
21
2.0
21
86
9
59
28
14
0
57
1.38
68891--68941
15
3.5
15
67
5
50
47
11
15
25
1.80
68859--68941
29
2.8
29
85
7
103
44
10
19
25
1.83
71409--71754
175
2.0
175
86
2
489
25
13
19
41
1.87

Tables:   1

The End!