genome.fa.s917.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000917.1 Hibiscus syriacus cultivar Beakdansim tig00001830_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54078

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617--683	15	4.5	15	78	10	66	41	5	16	35	1.73
613--683	30	2.4	30	90	2	108	45	5	15	33	1.70
666--735	20	3.5	20	92	2	113	41	10	12	35	1.77
898--993	28	3.5	27	72	23	85	51	2	1	45	1.20
894--1060	71	2.3	69	74	14	153	51	1	1	46	1.16
936--1038	47	2.3	44	79	12	102	49	0	0	48	1.14
911--1076	50	3.2	51	73	12	135	50	1	0	47	1.13
955--1044	22	4.1	21	76	12	83	47	1	1	50	1.15
998--1056	27	2.1	28	81	3	66	50	0	0	49	1.00
1249--1363	42	2.7	42	97	0	212	44	20	18	17	1.87
2319--2468	33	4.5	33	82	0	174	36	18	27	18	1.94
5300--5370	3	24.7	3	80	13	87	32	1	0	66	1.01
5874--5930	28	2.1	27	81	15	64	63	24	12	0	1.29
6703--6753	23	2.3	22	86	10	68	27	0	3	68	1.07
7497--7554	28	2.1	27	84	6	73	32	5	1	60	1.29
7497--7557	29	2.1	28	82	8	70	31	4	1	62	1.26
12225--12269	9	5.1	9	94	5	83	77	0	22	0	0.76
12225--12269	17	2.6	18	96	3	83	77	0	22	0	0.76
16992--17065	22	3.4	22	92	0	121	32	16	12	39	1.85
17411--17838	113	3.7	113	84	5	472	37	14	20	28	1.91
18202--18273	3	24.7	3	83	10	96	31	1	0	66	1.00
19586--19628	23	1.9	22	86	13	61	27	0	6	65	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20851--20904	20	2.7	20	91	0	81	33	27	11	27	1.91
20893--20983	20	4.5	20	68	16	71	29	26	15	28	1.96
21152--21200	22	2.2	22	77	0	53	20	42	16	20	1.89
21535--21573	20	2.0	20	94	0	69	51	17	12	17	1.76
21579--21627	20	2.5	20	86	3	64	10	18	22	48	1.77
21590--21660	20	3.8	20	73	21	73	12	18	21	47	1.81
21624--21667	20	2.2	20	87	0	61	15	15	20	47	1.82
23003--23075	30	2.4	30	90	0	110	30	23	20	26	1.99
23061--23248	31	6.0	31	79	9	202	31	19	18	30	1.96
23086--23251	63	2.7	63	96	0	298	31	18	18	31	1.95
27626--27682	30	1.9	30	100	0	114	31	24	21	22	1.98
27687--27857	31	5.5	31	73	6	148	30	19	17	32	1.95
27686--27874	63	3.0	63	90	2	274	31	18	17	32	1.94
30818--30916	42	2.4	42	91	0	162	28	37	18	16	1.92
31031--31083	21	2.5	21	90	6	81	20	13	30	35	1.91
31153--31206	21	2.6	21	82	5	65	18	14	29	37	1.91
31488--31542	21	2.6	21	97	0	101	21	40	20	18	1.92
33087--33190	29	3.6	29	97	0	190	28	24	18	28	1.98
35621--35667	24	2.0	24	95	0	85	34	17	21	27	1.95
35625--35676	24	2.2	24	85	0	68	36	19	19	25	1.95
38644--38691	18	2.5	19	83	10	62	35	10	25	29	1.89
38786--38915	20	6.4	20	69	20	83	32	13	24	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38798--38873	21	3.7	20	81	10	82	31	14	23	30	1.94
38784--38873	41	2.2	41	80	4	110	31	15	23	30	1.95
38775--38928	20	7.5	22	71	15	80	33	14	24	27	1.94
43288--43342	21	2.6	21	88	0	83	20	12	9	58	1.61

Tables:   1

The End!