genome.fa.s9170.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009170.1 Hibiscus syriacus cultivar Beakdansim tig00112718_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105926

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1388--1445	30	1.9	30	82	0	71	36	24	20	18	1.95
9879--9928	21	2.4	21	96	0	91	54	0	0	46	1.00
24403--24465	29	2.2	29	97	2	119	57	3	3	36	1.31
26012--26071	18	3.0	21	83	16	90	26	28	23	21	1.99
30088--30178	18	4.8	18	81	10	110	29	31	19	18	1.96
32199--32298	16	6.3	16	70	22	68	37	1	1	61	1.10
32230--32305	13	6.0	13	72	18	54	36	1	0	61	1.04
36316--36341	2	13.0	2	100	0	52	50	0	0	50	1.00
41020--41046	12	2.2	12	100	0	54	48	11	0	40	1.39
41473--41517	11	3.9	11	82	5	54	42	0	0	57	0.98
41482--41524	5	8.2	5	80	10	50	41	0	2	55	1.12
41482--41518	16	2.3	16	90	9	58	43	0	0	56	0.99
43530--43568	14	3.0	13	82	10	53	58	2	0	38	1.12
43664--43701	19	2.1	19	95	5	69	71	5	5	18	1.25
44971--45061	3	29.7	3	78	4	83	56	1	2	40	1.19
44977--45059	19	4.3	19	75	11	71	55	1	2	40	1.21
45284--46202	116	8.0	116	96	0	1514	29	19	13	37	1.89
46602--46656	22	2.5	22	87	0	83	38	14	10	36	1.81
47028--47336	54	5.8	54	82	5	362	24	21	15	38	1.92
47028--47336	108	2.9	108	93	2	502	24	21	15	38	1.92
47023--47318	162	1.8	158	85	5	407	25	21	14	37	1.92
49353--49578	114	2.0	114	89	0	344	30	19	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51615--51663	14	3.6	14	78	13	57	0	18	0	81	0.69
51615--51659	22	2.0	23	91	4	74	0	17	0	82	0.68
56857--56895	14	3.0	13	82	10	53	58	2	0	38	1.12
56991--57028	19	2.1	19	95	5	69	71	5	5	18	1.25
58288--58378	3	29.7	3	80	4	92	57	0	2	40	1.11
69642--69682	2	20.5	2	100	0	82	48	0	0	51	1.00
73157--73222	33	2.1	31	86	8	89	37	24	15	22	1.92
82290--82518	115	2.0	115	100	0	458	32	10	18	38	1.85
83677--83769	32	2.9	32	100	0	186	24	19	15	40	1.90
90382--90411	15	2.0	15	93	0	51	56	3	0	40	1.16
90829--90903	11	6.8	10	72	14	51	65	1	2	30	1.15
92451--93064	105	5.8	105	96	0	1104	22	18	25	33	1.97
100452--100500	20	2.3	22	75	13	57	16	20	2	61	1.44
100577--100654	39	2.0	39	82	5	95	16	25	28	29	1.97
104560--104630	4	17.2	4	75	18	58	70	4	1	23	1.13

Tables:   1

The End!