Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10629029
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 24 of 51
Found at i:4745732 original size:52 final size:52
Alignment explanation
Indices: 4745654--4745756 Score: 197
Period size: 52 Copynumber: 2.0 Consensus size: 52
4745644 TTATAATATT
4745654 CTTGTAATTAGTTGTAATCCCCTAACTCTAGGCTAGTCTCCTATTTCTATGC
1 CTTGTAATTAGTTGTAATCCCCTAACTCTAGGCTAGTCTCCTATTTCTATGC
*
4745706 CTTGTAATTAGTTGTAATCCCCTAACTCTAGGCTAGTTTCCTATTTCTATG
1 CTTGTAATTAGTTGTAATCCCCTAACTCTAGGCTAGTCTCCTATTTCTATG
4745757 TGTCCAATTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (52 bp):
CTTGTAATTAGTTGTAATCCCCTAACTCTAGGCTAGTCTCCTATTTCTATGC
Found at i:4747569 original size:31 final size:31
Alignment explanation
Indices: 4747524--4747594 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
4747514 TACATGTTAA
* * * * *
4747524 TTAATTGAATTGTTAAGGTTAAATAGTTCAG
1 TTAATCGAAATGTTAAAGCTAAATAATTCAG
4747555 TTAATCGAAATGTTAAAGCTAAATAATTCAG
1 TTAATCGAAATGTTAAAGCTAAATAATTCAG
4747586 TTAATCGAA
1 TTAATCGAA
4747595 TTGTAAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (31 bp):
TTAATCGAAATGTTAAAGCTAAATAATTCAG
Found at i:4749818 original size:27 final size:27
Alignment explanation
Indices: 4749783--4749841 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
4749773 GAACCATGAC
4749783 GAAGATATATGAATCTTAGATTTTGAA
1 GAAGATATATGAATCTTAGATTTTGAA
4749810 GAAGATATATGAATCTTAGATTTTGAA
1 GAAGATATATGAATCTTAGATTTTGAA
4749837 GAAGA
1 GAAGA
4749842 AAAACAGATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.42, C:0.03, G:0.20, T:0.34
Consensus pattern (27 bp):
GAAGATATATGAATCTTAGATTTTGAA
Found at i:4751773 original size:26 final size:26
Alignment explanation
Indices: 4751744--4751826 Score: 82
Period size: 26 Copynumber: 3.2 Consensus size: 26
4751734 TATTTATTAT
4751744 TATTTTACTATTAACGTATATAAATA
1 TATTTTACTATTAACGTATATAAATA
* * ** *
4751770 TATTTTTCTCTT-TTGCTACTAT-TAT-
1 TATTTTACTATTAACG-TA-TATAAATA
4751795 TATTTTACTATTAACGTATATAAATA
1 TATTTTACTATTAACGTATATAAATA
4751821 TATTTT
1 TATTTT
4751827 TCTCTTTTGC
Statistics
Matches: 42, Mismatches: 10, Indels: 10
0.68 0.16 0.16
Matches are distributed among these distances:
24 3 0.07
25 15 0.36
26 21 0.50
27 3 0.07
ACGTcount: A:0.33, C:0.10, G:0.04, T:0.54
Consensus pattern (26 bp):
TATTTTACTATTAACGTATATAAATA
Found at i:4751793 original size:51 final size:51
Alignment explanation
Indices: 4751738--4751848 Score: 222
Period size: 51 Copynumber: 2.2 Consensus size: 51
4751728 CTATTATATT
4751738 TATTATTATTTTACTATTAACGTATATAAATATATTTTTCTCTTTTGCTAC
1 TATTATTATTTTACTATTAACGTATATAAATATATTTTTCTCTTTTGCTAC
4751789 TATTATTATTTTACTATTAACGTATATAAATATATTTTTCTCTTTTGCTAC
1 TATTATTATTTTACTATTAACGTATATAAATATATTTTTCTCTTTTGCTAC
4751840 TATTATTAT
1 TATTATTAT
4751849 CATTATATGT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.56
Consensus pattern (51 bp):
TATTATTATTTTACTATTAACGTATATAAATATATTTTTCTCTTTTGCTAC
Found at i:4751994 original size:16 final size:16
Alignment explanation
Indices: 4751973--4752006 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4751963 CATGTATTTA
4751973 TATTATATTACATTAT
1 TATTATATTACATTAT
* *
4751989 TATTATTTTACTTTAT
1 TATTATATTACATTAT
4752005 TA
1 TA
4752007 AATTATTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTATATTACATTAT
Found at i:4755410 original size:22 final size:22
Alignment explanation
Indices: 4755359--4755437 Score: 70
Period size: 22 Copynumber: 3.5 Consensus size: 22
4755349 CAAAAAGGGC
* *
4755359 AAAAAGAAAAAAAGAAAAGAAGTAA
1 AAAAAG-AAAAAA-CAAAGAA-CAA
4755384 AAAAAGGAAAAAAC-AAGAACAA
1 AAAAA-GAAAAAACAAAGAACAA
* *
4755406 AAAAAGAAAGAACAAAGATCAA
1 AAAAAGAAAAAACAAAGAACAA
*
4755428 AAAGAGAAAA
1 AAAAAGAAAA
4755438 GGGGACAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
21 7 0.15
22 22 0.48
23 5 0.11
25 11 0.24
26 1 0.02
ACGTcount: A:0.77, C:0.05, G:0.15, T:0.03
Consensus pattern (22 bp):
AAAAAGAAAAAACAAAGAACAA
Found at i:4756068 original size:22 final size:22
Alignment explanation
Indices: 4756040--4756083 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
4756030 AGCTACCCCA
4756040 TCAAACC-TTTGAGCATCAAATG
1 TCAAACCATTT-AGCATCAAATG
4756062 TCAAACCATTTAGCATCAAATG
1 TCAAACCATTTAGCATCAAATG
4756084 AACAAAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.27
Consensus pattern (22 bp):
TCAAACCATTTAGCATCAAATG
Found at i:4756525 original size:18 final size:18
Alignment explanation
Indices: 4756502--4756537 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
4756492 TCAACATCAA
* *
4756502 ATATTGGGGCATTTTTGG
1 ATATTGAGGCATCTTTGG
4756520 ATATTGAGGCATCTTTGG
1 ATATTGAGGCATCTTTGG
4756538 GGATTCAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.08, G:0.31, T:0.42
Consensus pattern (18 bp):
ATATTGAGGCATCTTTGG
Found at i:4757139 original size:36 final size:36
Alignment explanation
Indices: 4757031--4757155 Score: 169
Period size: 36 Copynumber: 3.4 Consensus size: 36
4757021 ATTGAAAACA
* *
4757031 TTTCCCTTGAAATAAATTTCGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAG
* * * *
4757067 TTTCCCTTGGAACTAAGTTTTGTCTCTCTTAAGACAG
1 TTTCCCTTGAAAC-AAATTTCGTCTCTCTTGAGACAG
* *
4757104 TTTCTCTTGAAACAAATTTCGTCTATCTTGAGACAG
1 TTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAG
4757140 TTTCCCTTGAAACAAA
1 TTTCCCTTGAAACAAA
4757156 ATCTTTGAAT
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
36 45 0.60
37 30 0.40
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (36 bp):
TTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAG
Found at i:4757217 original size:65 final size:65
Alignment explanation
Indices: 4757113--4757287 Score: 224
Period size: 65 Copynumber: 2.6 Consensus size: 65
4757103 GTTTCTCTTG
* * **
4757113 AAACAAATTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATTTATTTCCCCTA
1 AAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAATCTTCAAATTTATTTCCCCTA
* *
4757178 AAACAAATTTCGTCTCTCTTGAGACAGTTACTCTTGAAACACAAAATCTTCAAATTTATTTCCCT
1 AAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTTG-AA-ACAAAATCTTCAAATTTATTTCCCC
4757243 TA
64 TA
* * * * *
4757245 AAACATAATTTTGTTTCCCTTGAGACCGTTTCTCATGAAACAA
1 AAACA-AATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACAA
4757288 CATATATCTT
Statistics
Matches: 95, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
65 33 0.35
66 6 0.06
67 31 0.33
68 25 0.26
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (65 bp):
AAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAATCTTCAAATTTATTTCCCCTA
Found at i:4758052 original size:105 final size:104
Alignment explanation
Indices: 4757891--4758340 Score: 674
Period size: 105 Copynumber: 4.3 Consensus size: 104
4757881 GCCATCCGCG
* * * *
4757891 ATTTCAACTCCACGACGGAGGATATCATGGCACTCGAGACAACGCAAGTTCAACTTCACGACGAA
1 ATTTCAACTTCACAACGAAGGATAT--TGG-ACTCCAGACAACGCAAGTTCAACTTCACGACGAA
*
4757956 GGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
63 GGGACCGCTGCTTGTCAACAACAACTT-TCAATCTCAGAGCCA
* *
4757999 ATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAATGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
4758064 ACCGCTGCTTGTCAACAACAACTTTCCAATCGCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTT-CAATCTCAGAGCCA
* * *
4758104 ATTTCAACTTCACAACGAATGATATTGGACTCCAGACAATGCAAGTTCAACTTCACAACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
4758169 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTT-TCAATCTCAGAGCCA
4758209 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
**
4758274 ACCGCTGCTTGTCAACAA-AA-TTTC-AT-TCAGATTCA
66 ACCGCTGCTTGTCAACAACAACTTTCAATCTCAGAGCCA
* *
4758309 ATTTCAACTTCACGACGGAGGATATTGGACTC
1 ATTTCAACTTCACAACGAAGGATATTGGACTC
4758341 TAAACAATGC
Statistics
Matches: 317, Mismatches: 23, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
100 37 0.12
101 2 0.01
102 1 0.00
103 2 0.01
104 3 0.01
105 247 0.78
106 3 0.01
108 22 0.07
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (104 bp):
ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
ACCGCTGCTTGTCAACAACAACTTTCAATCTCAGAGCCA
Found at i:4759716 original size:56 final size:54
Alignment explanation
Indices: 4759646--4759762 Score: 163
Period size: 50 Copynumber: 2.2 Consensus size: 54
4759636 ATATATTATA
*
4759646 ACTATTATATTTTTATTATTTACTATTAACGTATAT-AATATATTTTCTCTTTTGCT
1 ACTATTAT-TATTTA-T-TTTACTATTAACGTATATAAATATATTTTCTCTTTTGCT
4759702 AC---TATTA-TTATTTTACTATTAACGTATATAAATATATTTTCTCTTTTGCT
1 ACTATTATTATTTATTTTACTATTAACGTATATAAATATATTTTCTCTTTTGCT
4759752 ACTATTATTAT
1 ACTATTATTAT
4759763 CATTATATGT
Statistics
Matches: 55, Mismatches: 1, Indels: 12
0.81 0.01 0.18
Matches are distributed among these distances:
49 18 0.33
50 23 0.42
51 3 0.05
52 1 0.02
53 8 0.15
56 2 0.04
ACGTcount: A:0.30, C:0.11, G:0.03, T:0.56
Consensus pattern (54 bp):
ACTATTATTATTTATTTTACTATTAACGTATATAAATATATTTTCTCTTTTGCT
Found at i:4759720 original size:49 final size:50
Alignment explanation
Indices: 4759658--4759762 Score: 196
Period size: 50 Copynumber: 2.1 Consensus size: 50
4759648 TATTATATTT
4759658 TTATTA-TTTACTATTAACGTATAT-AATATATTTTCTCTTTTGCTACTA
1 TTATTATTTTACTATTAACGTATATAAATATATTTTCTCTTTTGCTACTA
4759706 TTATTATTTTACTATTAACGTATATAAATATATTTTCTCTTTTGCTACTA
1 TTATTATTTTACTATTAACGTATATAAATATATTTTCTCTTTTGCTACTA
4759756 TTATTAT
1 TTATTAT
4759763 CATTATATGT
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
48 6 0.11
49 18 0.33
50 31 0.56
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.55
Consensus pattern (50 bp):
TTATTATTTTACTATTAACGTATATAAATATATTTTCTCTTTTGCTACTA
Found at i:4759910 original size:16 final size:16
Alignment explanation
Indices: 4759889--4759922 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4759879 CATGTATTTA
4759889 TATTATATTACATTAT
1 TATTATATTACATTAT
* *
4759905 TATTATTTTACTTTAT
1 TATTATATTACATTAT
4759921 TA
1 TA
4759923 AATTATTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTATATTACATTAT
Found at i:4759927 original size:21 final size:21
Alignment explanation
Indices: 4759903--4759949 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
4759893 ATATTACATT
*
4759903 ATTATTATTTTACTTTATTAA
1 ATTATTATTTTACGTTATTAA
* * *
4759924 ATTATTTTTTTTCGTTATTAT
1 ATTATTATTTTACGTTATTAA
4759945 ATTAT
1 ATTAT
4759950 ATATATATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (21 bp):
ATTATTATTTTACGTTATTAA
Found at i:4771773 original size:20 final size:20
Alignment explanation
Indices: 4771679--4772047 Score: 458
Period size: 20 Copynumber: 18.4 Consensus size: 20
4771669 GATTTTCCAT
* ** *
4771679 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
4771699 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
4771719 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
4771739 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
4771759 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
4771779 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
4771799 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
4771819 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
4771839 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
4771859 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
4771879 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
4771899 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
4771919 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
4771939 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
4771959 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
4771979 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
4771999 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
4772019 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
4772039 AATCACAAC
1 AATCGCAAC
4772048 ACTGAAATTT
Statistics
Matches: 305, Mismatches: 36, Indels: 16
0.85 0.10 0.04
Matches are distributed among these distances:
19 3 0.01
20 299 0.98
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:4772760 original size:24 final size:24
Alignment explanation
Indices: 4772721--4772767 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
4772711 AAATTTGGTC
4772721 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
4772745 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
4772768 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:4772959 original size:12 final size:12
Alignment explanation
Indices: 4772942--4772966 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4772932 ATATAATCCT
4772942 GAAGAAGAAAAA
1 GAAGAAGAAAAA
4772954 GAAGAAGAAAAA
1 GAAGAAGAAAAA
4772966 G
1 G
4772967 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:4775295 original size:19 final size:19
Alignment explanation
Indices: 4775273--4775578 Score: 356
Period size: 19 Copynumber: 17.4 Consensus size: 19
4775263 CGGAAAATAC
*
4775273 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
4775292 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
*
4775306 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
4775325 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
4775339 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
4775358 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
4775377 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
4775391 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
4775410 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
* *
4775429 AATCG-AA-CCGACAT---
1 AATCGCAATGCGAAATGAA
*
4775443 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
4775462 AATCGCAATACGAAATGAA
1 AATCGCAATGCGAAATGAA
4775481 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
4775500 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
4775519 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
4775533 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
4775552 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
4775571 AATCGCAA
1 AATCGCAA
4775579 CGAGATAATC
Statistics
Matches: 249, Mismatches: 13, Indels: 50
0.80 0.04 0.16
Matches are distributed among these distances:
14 45 0.18
15 4 0.02
16 16 0.06
17 16 0.06
18 4 0.02
19 164 0.66
ACGTcount: A:0.47, C:0.19, G:0.20, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:4775315 original size:33 final size:34
Alignment explanation
Indices: 4775273--4775600 Score: 198
Period size: 33 Copynumber: 9.5 Consensus size: 34
4775263 CGGAAAATAC
*
4775273 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAA
1 AATCGCAATGCGAAATGAAAATCCCAACAATGAA
* * * *
4775306 AATCGCAACGCGAAATGAAAATCGCAACGA-GAG
1 AATCGCAATGCGAAATGAAAATCCCAACAATGAA
*
4775339 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCCCAA--C--AATGAA
* * * * *
4775377 AATCGCAACGAGAGAATCG-CAAT-GCGA-AATGAA
1 AATCGCAATGCGA-AAT-GAAAATCCCAACAATGAA
* *
4775410 AATCGCAATGCGAAATGAAAAT-CGAAC--CGACA
1 AATCGCAATGCGAAATGAAAATCCCAACAATGA-A
* *
4775442 TAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAA
1 -AATCGCAATGCGAAATGAAAATC-CCA-AC--AATGAA
*
4775481 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCCCAA--C--AATGAA
*
4775519 AATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCCCAA--C--AATGAA
* * *
4775552 AATCGCAATGCGAAATGAAAATCGCAACGA-GAT
1 AATCGCAATGCGAAATGAAAATCCCAACAATGAA
4775585 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
4775601 TATAAACGCA
Statistics
Matches: 245, Mismatches: 24, Indels: 52
0.76 0.07 0.16
Matches are distributed among these distances:
31 3 0.01
32 8 0.03
33 138 0.56
34 2 0.01
35 9 0.04
36 10 0.04
37 2 0.01
38 63 0.26
39 7 0.03
40 3 0.01
ACGTcount: A:0.47, C:0.19, G:0.20, T:0.14
Consensus pattern (34 bp):
AATCGCAATGCGAAATGAAAATCCCAACAATGAA
Found at i:4775333 original size:52 final size:52
Alignment explanation
Indices: 4775273--4775526 Score: 255
Period size: 52 Copynumber: 4.8 Consensus size: 52
4775263 CGGAAAATAC
* *
4775273 AATCGCAACGCGA-AAT-GAAAATCCCAACATGAAAATCGCAACGCGAAATGAA
1 AATCGCAACGCGAGAATCG-AAATCCGAA-ATGAAAATCGCAATGCGAAATGAA
* * *
4775325 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGCGAGAATCGAAATCCGAAATGAAAATCGCAATGCGAAATGAA
* * *
4775377 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGCGAGAATCGAAATCCGAAATGAAAATCGCAATGCGAAATGAA
* * * * *
4775429 AATCG-AAC-CGACATAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAA
1 AATCGCAACGCG--AGAATCGAAATCCGAAATGAAAATCGCAATGCGAAATGAA
* * *
4775481 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAACGCG--A-G--AATCGAAATCCGAAATGAAAATCGCAA
4775527 CGAAAGAATC
Statistics
Matches: 180, Mismatches: 13, Indels: 13
0.87 0.06 0.06
Matches are distributed among these distances:
50 1 0.01
51 3 0.02
52 134 0.74
53 11 0.06
54 5 0.03
57 26 0.14
ACGTcount: A:0.47, C:0.19, G:0.20, T:0.14
Consensus pattern (52 bp):
AATCGCAACGCGAGAATCGAAATCCGAAATGAAAATCGCAATGCGAAATGAA
Found at i:4775416 original size:71 final size:71
Alignment explanation
Indices: 4775339--4775578 Score: 355
Period size: 71 Copynumber: 3.4 Consensus size: 71
4775329 GCAACGAGAG
*
4775339 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
4775404 AATGAA
66 AATGAA
* * *
4775410 AATCGCAATGCGAAATGAAAATCG-AA-CCGACAT---AATCGCAATGCGAAATTAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG-AA--AGAATCGCAA
*
4775470 TACGAAATGAA
61 TGCGAAATGAA
4775481 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
4775546 AATGAA
66 AATGAA
4775552 AATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAA
4775579 CGAGATAATC
Statistics
Matches: 150, Mismatches: 9, Indels: 20
0.84 0.05 0.11
Matches are distributed among these distances:
66 8 0.05
68 2 0.01
69 6 0.04
70 2 0.01
71 113 0.75
72 2 0.01
73 7 0.05
74 2 0.01
76 8 0.05
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.15
Consensus pattern (71 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
AATGAA
Found at i:4775558 original size:52 final size:53
Alignment explanation
Indices: 4775339--4775600 Score: 287
Period size: 52 Copynumber: 4.9 Consensus size: 53
4775329 GCAACGAGAG
*
4775339 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAAAATCGCAA--CGAAATG--AATCGCAATGCGAAATGAA
**
4775391 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA----AAT-CGAACCGACA
1 AATCGCAATGCGAAATGAAAATCGCAA--CGAAATGAATCGCAATGCGAAATGA-A
*
4775442 TAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAAATGAA
1 -AATCGCAATGCGAAATGAAAATCGC-A-ACGAAATG--AATCGCAATGCGAAATGAA
4775500 AATCGCAATGCGAAATGAAAATCGCAACGAAA-GAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAAATGAATCGCAATGCGAAATGAA
*
4775552 AATCGCAATGCGAAATGAAAATCGCAACGAGAT-AATCGCAATGCGAAAT
1 AATCGCAATGCGAAATGAAAATCGCAACGAAATGAATCGCAATGCGAAAT
4775601 TATAAACGCA
Statistics
Matches: 187, Mismatches: 7, Indels: 32
0.83 0.03 0.14
Matches are distributed among these distances:
46 2 0.01
47 2 0.01
50 4 0.02
52 133 0.71
53 1 0.01
54 4 0.02
55 6 0.03
56 1 0.01
57 24 0.13
58 4 0.02
59 6 0.03
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.15
Consensus pattern (53 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAAATGAATCGCAATGCGAAATGAA
Found at i:4775716 original size:19 final size:19
Alignment explanation
Indices: 4775607--4775708 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
4775597 AAATTATAAA
4775607 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
4775626 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
4775646 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
4775662 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
4775679 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
4775698 CGCATTGCGAT
1 CGCATTGCGAT
4775709 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:4775834 original size:14 final size:14
Alignment explanation
Indices: 4775815--4775851 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
4775805 CATCAATTAC
4775815 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
4775829 ACAAATCATCTTTT
1 ACAAATCAACTTTT
4775843 ACAAATCAA
1 ACAAATCAA
4775852 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:4777829 original size:14 final size:14
Alignment explanation
Indices: 4777810--4777866 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
4777800 GCGAAATGAA
*
4777810 AATCGCAACGACAG
1 AATCGCAACGAAAG
4777824 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
4777841 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
4777857 AATCGCAACG
1 AATCGCAACG
4777867 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:4777837 original size:33 final size:33
Alignment explanation
Indices: 4777791--4777882 Score: 166
Period size: 33 Copynumber: 2.8 Consensus size: 33
4777781 GCGAAACCAA
*
4777791 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
4777824 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
4777857 AATCGCAACGCGAAATGAAAATCGCA
1 AATCGCAACGCGAAATGAAAATCGCA
4777883 TTGCGATTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:4777888 original size:19 final size:19
Alignment explanation
Indices: 4777754--4777882 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
4777744 TAGTTTACTT
* *
4777754 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
4777774 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
4777793 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
4777812 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
4777826 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
4777845 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
4777859 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
4777878 TCGCA
1 TCGCA
4777883 TTGCGATTTT
Statistics
Matches: 92, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.17
16 11 0.12
17 11 0.12
19 42 0.46
20 12 0.13
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:4777900 original size:19 final size:18
Alignment explanation
Indices: 4777878--4777996 Score: 85
Period size: 19 Copynumber: 6.8 Consensus size: 18
4777868 GAAATGAAAA
*
4777878 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTC-TT
4777897 TCGCGTTGCGA---TC-T
1 TCGCGTTGCGATTTTCTT
*
4777911 T-GTCGTTGCGATTTTGGTT
1 TCG-CGTTGCGATTTT-CTT
*
4777930 TCGCGTTGCGA--TTCTG
1 TCGCGTTGCGATTTTCTT
*
4777946 T--CGTTGCGATTTTCAAT
1 TCGCGTTGCGATTTTC-TT
*
4777963 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTT-CTT
4777982 TCGCGTTGCGATTTT
1 TCGCGTTGCGATTTT
4777997 AAGTTTCGTG
Statistics
Matches: 79, Mismatches: 8, Indels: 26
0.70 0.07 0.23
Matches are distributed among these distances:
13 1 0.01
14 18 0.23
16 7 0.09
17 4 0.05
19 48 0.61
20 1 0.01
ACGTcount: A:0.09, C:0.19, G:0.26, T:0.45
Consensus pattern (18 bp):
TCGCGTTGCGATTTTCTT
Found at i:4777925 original size:33 final size:33
Alignment explanation
Indices: 4777883--4777975 Score: 143
Period size: 33 Copynumber: 2.8 Consensus size: 33
4777873 GAAAATCGCA
4777883 TTGCGATTTTCATTTCGCGTTGCGA-TCTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTC-TGTCG
**
4777916 TTGCGATTTTGGTTTCGCGTTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
4777949 TTGCGATTTTCAATTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
4777976 TTGGTTTCGC
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
33 52 0.96
34 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.26, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:4778004 original size:20 final size:20
Alignment explanation
Indices: 4777947--4778012 Score: 84
Period size: 19 Copynumber: 3.4 Consensus size: 20
4777937 GCGATTCTGT
4777947 CGTTGCGATTTTCAA--TTCG
1 CGTTGCGATTTT-AAGTTTCG
*
4777966 CGTTGCGATTTT-GGTTTCG
1 CGTTGCGATTTTAAGTTTCG
4777985 CGTTGCGATTTTAAGTTTCG
1 CGTTGCGATTTTAAGTTTCG
*
4778005 TGTTGCGA
1 CGTTGCGA
4778013 AAGTAAACTA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
19 28 0.68
20 13 0.32
ACGTcount: A:0.12, C:0.17, G:0.27, T:0.44
Consensus pattern (20 bp):
CGTTGCGATTTTAAGTTTCG
Found at i:4778215 original size:93 final size:93
Alignment explanation
Indices: 4778056--4778528 Score: 930
Period size: 93 Copynumber: 5.1 Consensus size: 93
4778046 TTGAATGGAT
4778056 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
4778121 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
4778149 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
4778214 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
4778242 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
4778307 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
4778335 AAATTTACTTTCAACCAAAAGACAAAACAACGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
4778399 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
4778427 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
4778492 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
4778520 AAATTTACT
1 AAATTTACT
4778529 AAGCAATCTA
Statistics
Matches: 377, Mismatches: 2, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
92 91 0.24
93 286 0.76
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:4778501 original size:185 final size:186
Alignment explanation
Indices: 4778056--4778528 Score: 930
Period size: 185 Copynumber: 2.5 Consensus size: 186
4778046 TTGAATGGAT
4778056 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
4778121 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
4778186 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
4778242 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
4778307 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAACGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
4778372 TA-TATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
4778427 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
4778492 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACT
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACT
4778529 AAGCAATCTA
Statistics
Matches: 286, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
185 155 0.54
186 131 0.46
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (186 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:4780272 original size:33 final size:33
Alignment explanation
Indices: 4780227--4780339 Score: 208
Period size: 33 Copynumber: 3.4 Consensus size: 33
4780217 TCTTTTGGTT
4780227 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
4780260 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
4780293 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
4780326 GAAATGAAAATCGC
1 GAAATGAAAATCGC
4780340 GTTGCGATTC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 76 1.00
ACGTcount: A:0.44, C:0.21, G:0.25, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:4780273 original size:19 final size:18
Alignment explanation
Indices: 4780234--4780339 Score: 83
Period size: 14 Copynumber: 6.4 Consensus size: 18
4780224 GTTGAAATGA
4780234 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
4780249 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
4780266 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
4780282 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
4780299 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
4780315 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
4780332 AAAATCGC
1 -AAATCGC
4780340 GTTGCGATTC
Statistics
Matches: 73, Mismatches: 3, Indels: 26
0.72 0.03 0.25
Matches are distributed among these distances:
14 24 0.33
16 15 0.21
17 12 0.16
19 22 0.30
ACGTcount: A:0.43, C:0.23, G:0.25, T:0.09
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:4780356 original size:14 final size:14
Alignment explanation
Indices: 4780339--4780393 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
4780329 ATGAAAATCG
4780339 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
4780353 CGTTGCGATTTCCATTTCG
1 CGTTGCGA-TT-C---TCT
4780372 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
4780386 CGTTGCGA
1 CGTTGCGA
4780394 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 2 0.06
16 1 0.03
17 1 0.03
18 2 0.06
19 10 0.29
ACGTcount: A:0.09, C:0.27, G:0.24, T:0.40
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:4780559 original size:33 final size:33
Alignment explanation
Indices: 4780514--4780584 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
4780504 AATACTAACT
*
4780514 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* * *
4780547 TGAAAATTGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
4780580 TGAAA
1 TGAAA
4780585 TCTAAGTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.48, C:0.17, G:0.23, T:0.13
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:4780818 original size:22 final size:22
Alignment explanation
Indices: 4780766--4780820 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
4780756 TGGTTGTGAG
**
4780766 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
4780788 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
4780810 GGATTTCTTCG
1 GGATTTCTTCG
4780821 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:4780991 original size:20 final size:20
Alignment explanation
Indices: 4780966--4781159 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
4780956 CTTTAAATAT
4780966 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
4780986 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
4781008 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
4781027 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
4781047 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
4781067 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
4781087 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
4781107 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
4781127 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
4781147 CGCGTTGCGATTT
1 CGCGTTGCGATTT
4781160 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:4781153 original size:60 final size:60
Alignment explanation
Indices: 4780966--4781159 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
4780956 CTTTAAATAT
**
4780966 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
4781027 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
4781087 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
4781147 CGCGTTGCGATTT
1 CGCGTTGCGATTT
4781160 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:4781176 original size:21 final size:20
Alignment explanation
Indices: 4781152--4781228 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 20
4781142 ATATTCGCGT
4781152 TGCGATTTTGGAAAATCGCAA
1 TGCGATTTTGGAAAATCGC-A
* * **
4781173 TGCGAATTTGTACTATCGCA
1 TGCGATTTTGGAAAATCGCA
* *
4781193 TCGCGATTTT-CAAGAATCGCGT
1 T-GCGATTTTGGAA-AATCGC-A
4781215 TGCGATTTTGGAAA
1 TGCGATTTTGGAAA
4781229 CTGATTTGCG
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.07
21 36 0.86
22 3 0.07
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
TGCGATTTTGGAAAATCGCA
Found at i:4781239 original size:20 final size:20
Alignment explanation
Indices: 4781214--4781265 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
4781204 AAGAATCGCG
*
4781214 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
4781234 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
4781254 TTGCGATTCTGG
1 TTGCGATTCTGG
4781266 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:4799253 original size:15 final size:15
Alignment explanation
Indices: 4799233--4799262 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
4799223 CAAATTATGC
4799233 CTCTAAATTAGGAAA
1 CTCTAAATTAGGAAA
*
4799248 CTCTAAGTTAGGAAA
1 CTCTAAATTAGGAAA
4799263 GATACTAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (15 bp):
CTCTAAATTAGGAAA
Found at i:4804311 original size:25 final size:25
Alignment explanation
Indices: 4804283--4804354 Score: 112
Period size: 25 Copynumber: 3.0 Consensus size: 25
4804273 TTCCAACCGA
4804283 ATTCTCTCTCACTCTCTCTCTAAAC
1 ATTCTCTCTCACTCTCTCTCTAAAC
*
4804308 ATTCTCTCTCTCTCTCTCTCTAAAC
1 ATTCTCTCTCACTCTCTCTCTAAAC
*
4804333 ATTCTCTCTTACTC-C-CTCTAAA
1 ATTCTCTCTCACTCTCTCTCTAAA
4804355 ACATAGAAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
23 7 0.16
24 1 0.02
25 36 0.82
ACGTcount: A:0.19, C:0.39, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTCTCTCTCACTCTCTCTCTAAAC
Found at i:4823278 original size:21 final size:22
Alignment explanation
Indices: 4823236--4823279 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
4823226 GGATGAATAT
**
4823236 TCTAGATCATTTTGGGGATGAA
1 TCTAGATCATTTTGAAGATGAA
*
4823258 TCTAGAT-ATTTTGAAGTTGAA
1 TCTAGATCATTTTGAAGATGAA
4823279 T
1 T
4823280 ATGGCCTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.41
Consensus pattern (22 bp):
TCTAGATCATTTTGAAGATGAA
Found at i:4831087 original size:15 final size:15
Alignment explanation
Indices: 4831067--4831097 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4831057 GAATTTTAAA
4831067 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
4831082 TATTTATATAAAAAT
1 TATTTAAATAAAAAT
4831097 T
1 T
4831098 CTATATGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:4834992 original size:20 final size:20
Alignment explanation
Indices: 4834967--4835008 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
4834957 CTAAGAGCCT
4834967 ATTTAGGA-TCATATAGATGC
1 ATTTAGGAGT-ATATAGATGC
*
4834987 ATTTAGGAGTATATAGTTGC
1 ATTTAGGAGTATATAGATGC
4835007 AT
1 AT
4835009 GTGGTGGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.38
Consensus pattern (20 bp):
ATTTAGGAGTATATAGATGC
Found at i:4839377 original size:9 final size:10
Alignment explanation
Indices: 4839344--4839382 Score: 53
Period size: 9 Copynumber: 3.8 Consensus size: 10
4839334 TGGGCTTGTA
4839344 ATTTAATATT
1 ATTTAATATT
4839354 ATTTATATATGT
1 ATTTA-ATAT-T
4839366 ATTTAATA-T
1 ATTTAATATT
4839375 ATTTAATA
1 ATTTAATA
4839383 ATAATAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.33
10 5 0.19
11 7 0.26
12 6 0.22
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (10 bp):
ATTTAATATT
Found at i:4839386 original size:3 final size:3
Alignment explanation
Indices: 4839378--4839463 Score: 136
Period size: 3 Copynumber: 28.7 Consensus size: 3
4839368 TTAATATATT
*
4839378 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
4839426 TTA TAG TAA TAA TAA TAA TTA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
4839464 TTTATAATAT
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:4839470 original size:18 final size:18
Alignment explanation
Indices: 4839369--4839472 Score: 103
Period size: 18 Copynumber: 5.9 Consensus size: 18
4839359 TATATGTATT
4839369 TAAT-ATATTTAATAATAA
1 TAATAATATTT-ATAATAA
* *
4839387 TAATAATAATGATAATAA
1 TAATAATATTTATAATAA
4839405 TAATAATA---ATAATAA
1 TAATAATATTTATAATAA
*
4839420 TAATAAT-TATAGTAATAA
1 TAATAATATTTA-TAATAA
*
4839438 TAATAAT-TATAATAATAA
1 TAATAATAT-TTATAATAA
4839456 TAATAATATTTATAATA
1 TAATAATATTTATAATA
4839473 TGGGTAAAAA
Statistics
Matches: 74, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
15 14 0.19
17 1 0.01
18 53 0.72
19 6 0.08
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
TAATAATATTTATAATAA
Found at i:4840429 original size:114 final size:113
Alignment explanation
Indices: 4839793--4840579 Score: 1317
Period size: 113 Copynumber: 7.0 Consensus size: 113
4839783 AGAATTATGC
* *
4839793 AAAAAGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* ** * * * *
4839858 TATGAAC-TTCTCTGGAAAAGCTGCTCCATCAAGTGATGGATT-TGAGC
66 TATGAACTTTCTCTGGAAAAGATAATCCATCAAATGATGAATTCAG-GT
** *
4839905 AAAAGGTTGAACAAGCTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
4839970 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATAATCCATCAAATGATGAATTCAGGT
4840018 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
4840083 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGGATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATAATCCATCAAATGATGAATTCAGGT
*
4840131 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
4840196 TATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATAATCCATCAAATGATGAATTCAGGT
*
4840244 AAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
4840309 TATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATAATCCATCAAATGATGAATTCAGGT
4840357 AAAAGGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 AAAA-GGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
4840422 TTATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
65 TTATGAACTTTCTCTGGAAAAGATAATCCATCAAATGATGAATTCAGGT
* *
4840471 AAAAGGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTA
1 AAAA-GGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
4840536 TTATGAACTTTCTCTGGAAAAGATAATCCATCAAATGATAAATT
65 TTATGAACTTTCTCTGGAAAAGATAATCCATCAAATGATGAATT
4840580 TGAATCTTTG
Statistics
Matches: 646, Mismatches: 26, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
112 67 0.10
113 365 0.57
114 214 0.33
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (113 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTTCTCTGGAAAAGATAATCCATCAAATGATGAATTCAGGT
Found at i:4841445 original size:83 final size:83
Alignment explanation
Indices: 4841306--4841522 Score: 407
Period size: 83 Copynumber: 2.6 Consensus size: 83
4841296 TCTGTAGTTC
*
4841306 CTACCAAACCAGATCAGATAATTCAAAGAACACTTCCAGAAGATGCTATTAGCAAATTCATCTTC
1 CTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCAAATTCATCTTC
4841371 CAAATTCAATGATTGGTT
66 CAAATTCAATGATTGGTT
*
4841389 CTACCAAACCAGACCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCAAATTCATCTTC
1 CTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCAAATTCATCTTC
4841454 CAAATTCAATGATTGGTT
66 CAAATTCAATGATTGGTT
*
4841472 CTGCCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTA
1 CTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTA
4841523 ATACATTACA
Statistics
Matches: 130, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 130 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (83 bp):
CTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCAAATTCATCTTC
CAAATTCAATGATTGGTT
Found at i:4842340 original size:16 final size:18
Alignment explanation
Indices: 4842299--4842346 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
4842289 ATTCAATAGA
*
4842299 AAAATAAATTGAATTTTC
1 AAAATAAATTGAATTCTC
4842317 GAAAATAAATTGAA-TCTC
1 -AAAATAAATTGAATTCTC
4842335 -AAATAAATTGAA
1 AAAATAAATTGAA
4842347 CTTGAAATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 12 0.43
18 3 0.11
19 13 0.46
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.31
Consensus pattern (18 bp):
AAAATAAATTGAATTCTC
Found at i:4855020 original size:16 final size:16
Alignment explanation
Indices: 4854995--4855059 Score: 123
Period size: 16 Copynumber: 4.1 Consensus size: 16
4854985 GGACGTGGCA
4854995 GCGG-TGGAGGCAGAG
1 GCGGCTGGAGGCAGAG
4855010 GCGGCTGGAGGCAGAG
1 GCGGCTGGAGGCAGAG
4855026 GCGGCTGGAGGCAGAG
1 GCGGCTGGAGGCAGAG
4855042 GCGGCTGGAGGCAGAG
1 GCGGCTGGAGGCAGAG
4855058 GC
1 GC
4855060 TTAGGAAACC
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
15 4 0.08
16 45 0.92
ACGTcount: A:0.18, C:0.18, G:0.57, T:0.06
Consensus pattern (16 bp):
GCGGCTGGAGGCAGAG
Found at i:4855167 original size:9 final size:10
Alignment explanation
Indices: 4855134--4855172 Score: 53
Period size: 9 Copynumber: 3.8 Consensus size: 10
4855124 TGGGCTTGTA
4855134 ATTTAATATT
1 ATTTAATATT
4855144 ATTTATATATGT
1 ATTTA-ATAT-T
4855156 ATTTAATA-T
1 ATTTAATATT
4855165 ATTTAATA
1 ATTTAATA
4855173 ATAATAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.33
10 5 0.19
11 7 0.26
12 6 0.22
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (10 bp):
ATTTAATATT
Found at i:4855176 original size:3 final size:3
Alignment explanation
Indices: 4855168--4855253 Score: 136
Period size: 3 Copynumber: 28.7 Consensus size: 3
4855158 TTAATATATT
*
4855168 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
4855216 TTA TAG TAA TAA TAA TAA TTA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
4855254 TTTATAATAT
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:4855260 original size:18 final size:18
Alignment explanation
Indices: 4855159--4855262 Score: 103
Period size: 18 Copynumber: 5.9 Consensus size: 18
4855149 TATATGTATT
4855159 TAAT-ATATTTAATAATAA
1 TAATAATATTT-ATAATAA
* *
4855177 TAATAATAATGATAATAA
1 TAATAATATTTATAATAA
4855195 TAATAATA---ATAATAA
1 TAATAATATTTATAATAA
*
4855210 TAATAAT-TATAGTAATAA
1 TAATAATATTTA-TAATAA
*
4855228 TAATAAT-TATAATAATAA
1 TAATAATAT-TTATAATAA
4855246 TAATAATATTTATAATA
1 TAATAATATTTATAATA
4855263 TGGGTAAAAA
Statistics
Matches: 74, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
15 14 0.19
17 1 0.01
18 53 0.72
19 6 0.08
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
TAATAATATTTATAATAA
Found at i:4858626 original size:22 final size:22
Alignment explanation
Indices: 4858598--4858646 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
4858588 GGCACAATTA
4858598 AATTATACTACCACTGAGAAAG
1 AATTATACTACCACTGAGAAAG
4858620 AATTATACTACCACTGAGAAAG
1 AATTATACTACCACTGAGAAAG
4858642 AATTA
1 AATTA
4858647 CTTGTCGTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.47, C:0.16, G:0.12, T:0.24
Consensus pattern (22 bp):
AATTATACTACCACTGAGAAAG
Found at i:4861940 original size:42 final size:42
Alignment explanation
Indices: 4861879--4861959 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
4861869 CCCCGTAGGT
* * *
4861879 TGTTGAGCCACTGGCGGAGGAACACCCTGAAATGCCACAGCC
1 TGTTGAGCCAATGGAGGAGGAACAACCTGAAATGCCACAGCC
* * * *
4861921 TGTTGAGCTAATGGAGGAGGGACAAGCTGAGATGCCACA
1 TGTTGAGCCAATGGAGGAGGAACAACCTGAAATGCCACA
4861960 TCAAGTTTCT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.28, C:0.23, G:0.32, T:0.16
Consensus pattern (42 bp):
TGTTGAGCCAATGGAGGAGGAACAACCTGAAATGCCACAGCC
Found at i:4865033 original size:18 final size:15
Alignment explanation
Indices: 4865010--4865052 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 15
4865000 ACGATGGATT
4865010 GTAATAGCAATTTAATA
1 GTAATAGCAA-TT-ATA
4865027 GGTAATAGTCAATTATA
1 -GTAATAG-CAATTATA
4865044 GTAATAGCA
1 GTAATAGCA
4865053 TACCACTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 2 0.08
16 7 0.29
17 3 0.12
18 9 0.38
19 3 0.12
ACGTcount: A:0.44, C:0.07, G:0.16, T:0.33
Consensus pattern (15 bp):
GTAATAGCAATTATA
Found at i:4881465 original size:11 final size:11
Alignment explanation
Indices: 4881449--4881480 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
4881439 TAACATAAAT
4881449 AAAAATAAAAC
1 AAAAATAAAAC
4881460 AAAAATAAAAC
1 AAAAATAAAAC
*
4881471 AAGAATAAAA
1 AAAAATAAAA
4881481 AAACCAGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.81, C:0.06, G:0.03, T:0.09
Consensus pattern (11 bp):
AAAAATAAAAC
Found at i:4881471 original size:28 final size:27
Alignment explanation
Indices: 4881417--4881481 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
4881407 AAATAAGTAG
**
4881417 AAATAAAAATAAAACAAAATGGTAACA
1 AAATAAAAATAAAACAAAATGAAAACA
4881444 TAAATAAAAATAAAACAAAAAT-AAAACA
1 -AAATAAAAATAAAAC-AAAATGAAAACA
4881472 AGAATAAAAA
1 A-AATAAAAA
4881482 AACCAGGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 1 0.03
28 27 0.82
29 5 0.15
ACGTcount: A:0.75, C:0.06, G:0.05, T:0.14
Consensus pattern (27 bp):
AAATAAAAATAAAACAAAATGAAAACA
Found at i:4881867 original size:2 final size:2
Alignment explanation
Indices: 4881803--4881853 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
4881793 AATATAATTA
4881803 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4881845 AT AT AT AT A
1 AT AT AT AT A
4881854 ATAATAGGTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4881981 original size:5 final size:5
Alignment explanation
Indices: 4881973--4882044 Score: 53
Period size: 5 Copynumber: 14.4 Consensus size: 5
4881963 GAAAATAAAA
*
4881973 ATAAT ATAAT ATAAT ATAAGA ATAAT ATAA- A-AA- ATAA- ATAAT ATATAT
1 ATAAT ATAAT ATAAT ATAA-T ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT
* *
4882021 ATATGT AATAAT AAAAT ATAAT AT
1 ATA-AT -ATAAT ATAAT ATAAT AT
4882045 TTAAATAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
3 3 0.05
4 7 0.12
5 31 0.55
6 12 0.21
7 3 0.05
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:4882031 original size:34 final size:33
Alignment explanation
Indices: 4881969--4882033 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 33
4881959 AAGAGAAAAT
4881969 AAAAATAATATAATATAATATAAGAATAATATA
1 AAAAATAATATAATATAATATAAGAATAATATA
*
4882002 AAAAATAA-ATAATATATATATATGTAATAATA
1 AAAAATAATATAATATA-ATATAAG-AATAATA
4882034 AAATATAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 8 0.28
33 14 0.48
34 7 0.24
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (33 bp):
AAAAATAATATAATATAATATAAGAATAATATA
Found at i:4882039 original size:21 final size:22
Alignment explanation
Indices: 4882004--4882062 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
4881994 ATAATATAAA
*
4882004 AAATAAATAATATATATATATGT
1 AAATAAATAAAATATA-ATATGT
*
4882027 -AAT-AATAAAATATAATATTT
1 AAATAAATAAAATATAATATGT
4882047 AAATAAATAAAA-ATAA
1 AAATAAATAAAATATAA
4882063 GAAAATAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 5 0.16
21 17 0.53
22 10 0.31
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (22 bp):
AAATAAATAAAATATAATATGT
Found at i:4883708 original size:84 final size:83
Alignment explanation
Indices: 4883562--4884634 Score: 944
Period size: 84 Copynumber: 12.9 Consensus size: 83
4883552 TGGTTGATTG
* * * * * * **** *
4883562 GCCTTCGAGCTGAATGAAATCGAACTCGAAAAGTCTTCGTTGACAGATAGTTTTTCTTGCCTTGA
1 GCCTTTGAGCTGAGTGTAATCGAACTCG-AAGGTCTTTGTTGGCAGATAACCCTTCTAGCCTTGA
* * *
4883627 GCTATGCTGTAAATTGACGT
65 GTTATGCTGCAAA-TGATGT
* * *
4883647 GCCTTTGAGATGAGTGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTATAGCCTTGAG
1 GCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTAGCCTTGAG
* *
4883712 TTATGTTGTAAATGATGT
66 TTATGCTGCAAATGATGT
* * * ** * * * *
4883730 TCCTTTTAGATGAGAATAATCGAACTCGAAGGTCTTGGTTGACAAATAACCCTTCTCGCCTTGAG
1 GCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTAGCCTTGAG
* * *
4883795 TTGTGCTGTAAATTGGATAT
66 TTATGCTGCAAA-T-GATGT
* * * * * *
4883815 GCCTTTGAGCTGAGTATAATCGAACTCAAAGGTCTTT-TATTG--G-T-----TGCTCGCCTTAA
1 GCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGT-TGGCAGATAACCCTTCTAGCCTTGA
** *
4883871 ACTACGCTGCAAATGATGT
65 GTTATGCTGCAAATGATGT
* *
4883890 GCCTTTGAGCTGAGTGTAATCGAACTCGAATGTCTTTGTTGACAGATAACCCTTCTAGCCTTGAG
1 GCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTAGCCTTGAG
* **
4883955 TTATGTTATAAATGATGT
66 TTATGCTGCAAATGATGT
* * * * * * * * * *
4883973 GCCTTAGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGTAGATAGCCCTTCTCGACATAA
1 GCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTT-GTTGGCAGATAACCCTTCTAGCCTTGA
* * * *
4884038 GCTATACTGCAAAAGTTGT
65 GTTATGCTGCAAATGATGT
* * ** * *
4884057 GCCTTTGAGCTGAGTGTAATCGAACTCAAAGGTCTTTATTGATAGATAACCTTTCTAACCTTGAG
1 GCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTAGCCTTGAG
* *
4884122 TTATACTGTAAATGATGT
66 TTATGCTGCAAATGATGT
* * * * * * * *
4884140 GTCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTAGTTGGCAGATAGCCCTTCTCGACTTAA
1 GCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTT-GTTGGCAGATAACCCTTCTAGCCTTGA
* *
4884205 GCTATGCTGCAAATGTTGT
65 GTTATGCTGCAAATGATGT
* * *
4884224 GCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAAATAGCCCTTCTTGCCTTGA
1 GCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGTTGGCAGATAACCCTTCTAGCCTTGA
* * * *
4884289 GCTATGTTACAAATGATAT
65 GTTATGCTGCAAATGATGT
* * * *
4884308 GCC-TTGAAGCTGAGCGTAGTCGAACTCAAAGGTATTTTGTTGGCAGATAACCCTTCTAGCCTTG
1 GCCTTTG-AGCTGAGTGTAATCGAACTCGAAGGT-CTTTGTTGGCAGATAACCCTTCTAGCCTTG
* *
4884372 AGTTATGCTACAAATGAAGT
64 AGTTATGCTGCAAATGATGT
* * * * * * *
4884392 GCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAAATAGCCCTTCTTGCCTTGA
1 GCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGTTGGCAGATAACCCTTCTAGCCTTGA
* ** *
4884457 GCTATATTGCAAACGATGT
65 GTTATGCTGCAAATGATGT
* * * * *
4884476 GCCTTGGAGCTGAGCT-TAGTCAAACTCGAACGTCTTTTATTGGCAGATAACCCTTCTAGCCTTG
1 GCCTTTGAGCTGAG-TGTAATCGAACTCGAAGGTC-TTTGTTGGCAGATAACCCTTCTAGCCTTG
4884540 AGTTATGCTGCAAATGATGT
64 AGTTATGCTGCAAATGATGT
* * * * *
4884560 GCCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTCGTTGGCAGATAACCCTTCTAGCCTTGA
1 GCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTT-GTTGGCAGATAACCCTTCTAGCCTTGA
4884625 GTTATGCTGC
65 GTTATGCTGC
4884635 TAATAGTTTC
Statistics
Matches: 804, Mismatches: 162, Indels: 45
0.80 0.16 0.04
Matches are distributed among these distances:
75 39 0.05
76 2 0.00
77 19 0.02
78 1 0.00
82 1 0.00
83 197 0.25
84 480 0.60
85 65 0.08
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (83 bp):
GCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTAGCCTTGAG
TTATGCTGCAAATGATGT
Found at i:4885966 original size:95 final size:94
Alignment explanation
Indices: 4885765--4886027 Score: 382
Period size: 95 Copynumber: 2.7 Consensus size: 94
4885755 GGCTAGCTGA
* * * *
4885765 ATCCATAAAGCCGGGGCATTTAACTAATTGCTCTAAAGGGACAACTTAATATCATTGTATAGATA
1 ATCCATAAAGCCGGGGCATTTAACCAATTGCTCTAGAGGGACAAC-TCA-ATC-TT-TATTGATA
4885830 TTATAATCACCTATATCAGGCTAGCTGAATATT
62 TTATAATCACCTATATCAGGCTAGCTGAATATT
*
4885863 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAATCTTTATTGTATATTA
1 ATCCATAAAGCCGGGGCATTTAACCAATTGCTCTAGAGGGACAACTCAATCTTTATTG-ATATTA
* *
4885928 TAATCACCTTTATCAGGCTAGCTGAATCTT
65 TAATCACCTATATCAGGCTAGCTGAATATT
* *
4885958 ATCCATAAAGCCGGGGCATTTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGCATATAT
1 ATCCATAAAGCCGGGGCATTTAACCAATTGCTCTAGAGGGACAACTCAATCTTTATTG-ATAT-T
4886023 ATAAT
64 ATAAT
4886028 ATTATAATCT
Statistics
Matches: 152, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
94 4 0.03
95 95 0.62
96 9 0.06
97 2 0.01
98 42 0.28
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (94 bp):
ATCCATAAAGCCGGGGCATTTAACCAATTGCTCTAGAGGGACAACTCAATCTTTATTGATATTAT
AATCACCTATATCAGGCTAGCTGAATATT
Found at i:4888587 original size:17 final size:16
Alignment explanation
Indices: 4888535--4888597 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 16
4888525 AAATAAGTAG
4888535 AAATAAAAATAAAACA
1 AAATAAAAATAAAACA
4888551 AAATAAACAA-AATGTTAACA
1 AAATAAA-AATAA----AACA
4888571 TAAATAAAAATAAAACA
1 -AAATAAAAATAAAACA
4888588 AGAATAAAAA
1 A-AATAAAAA
4888598 ACCTAGGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 15
0.72 0.00 0.28
Matches are distributed among these distances:
16 10 0.26
17 14 0.36
20 6 0.15
21 9 0.23
ACGTcount: A:0.75, C:0.06, G:0.03, T:0.16
Consensus pattern (16 bp):
AAATAAAAATAAAACA
Found at i:4888629 original size:19 final size:19
Alignment explanation
Indices: 4888605--4888697 Score: 57
Period size: 19 Copynumber: 4.8 Consensus size: 19
4888595 AAAACCTAGG
* * *
4888605 AAAAAATTGGAATTAAATA
1 AAAAAATAGAAATAAAATA
4888624 AAAAAATAGAAATAAAATAA
1 AAAAAATAGAAATAAAAT-A
4888644 AACAAAATA-ATAATAATAAT-
1 AA-AAAATAGA-AATAA-AATA
* *
4888664 AAATAATAGAAA-ATAATA
1 AAAAAATAGAAATAAAATA
* *
4888682 GAAATAATAAAAATAA
1 -AAAAAATAGAAATAA
4888698 TATATACATA
Statistics
Matches: 59, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
17 3 0.05
18 1 0.02
19 33 0.56
20 8 0.14
21 11 0.19
22 3 0.05
ACGTcount: A:0.72, C:0.01, G:0.05, T:0.22
Consensus pattern (19 bp):
AAAAAATAGAAATAAAATA
Found at i:4888657 original size:3 final size:3
Alignment explanation
Indices: 4888649--4888712 Score: 51
Period size: 3 Copynumber: 20.3 Consensus size: 3
4888639 AATAAAACAA
* *
4888649 AAT AAT AAT AAT AAT AAAT AAT AGAA AAT AAT AGA- AAT AAT AAA AAT
1 AAT AAT AAT AAT AAT -AAT AAT A-AT AAT AAT A-AT AAT AAT AAT AAT
4888696 AAT ATAT ACAT -AT AAT A
1 AAT A-AT A-AT AAT AAT A
4888713 TAGTATTAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
2 3 0.06
3 36 0.72
4 11 0.22
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:4888676 original size:26 final size:26
Alignment explanation
Indices: 4888620--4888696 Score: 85
Period size: 26 Copynumber: 3.2 Consensus size: 26
4888610 ATTGGAATTA
4888620 AATA-AAAA-AATAGAAAT-A-AAAT
1 AATACAAAATAATAGAAATAATAAAT
*
4888642 AAAACAAAATAATA-ATAATAATAAAT
1 AATACAAAATAATAGA-AATAATAAAT
*
4888668 AATAGAAAATAATAGAAATAATAAA-
1 AATACAAAATAATAGAAATAATAAAT
4888693 AATA
1 AATA
4888697 ATATATACAT
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
22 3 0.07
23 5 0.11
24 7 0.15
25 5 0.11
26 25 0.54
27 1 0.02
ACGTcount: A:0.74, C:0.01, G:0.04, T:0.21
Consensus pattern (26 bp):
AATACAAAATAATAGAAATAATAAAT
Found at i:4889279 original size:17 final size:16
Alignment explanation
Indices: 4889227--4889289 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 16
4889217 AAATAAGTAG
*
4889227 AAATAAAAATAAAACA
1 AAATAAAAATTAAACA
*
4889243 AAATAAACAAAATGTTAACA
1 AAAT--A-AAAAT-TAAACA
4889263 TAAATAAAAATTAAACA
1 -AAATAAAAATTAAACA
4889280 AGAATAAAAA
1 A-AATAAAAA
4889290 AACCAGGAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
16 5 0.13
17 13 0.34
18 6 0.16
19 6 0.16
20 4 0.11
21 4 0.11
ACGTcount: A:0.73, C:0.06, G:0.03, T:0.17
Consensus pattern (16 bp):
AAATAAAAATTAAACA
Found at i:4889372 original size:693 final size:684
Alignment explanation
Indices: 4888033--4889411 Score: 2449
Period size: 693 Copynumber: 2.0 Consensus size: 684
4888023 CTTAAAATTT
4888033 AAAATTACACTTTTCGTTAAAAAGACAACTGGAAATTACCTTAGCCTGACTCACTTACATGTCCC
1 AAAATTACACTTTTCGTTAAAAAGACAACTGGAAATTACCTTAGCCTGACTCACTTACATGTCCC
*
4888098 CAACGGAGTCGCCAAGCTGTCAGAACCGTCTTTCGGGTGGGCTCGAAATTGGGCTTCGACTTGGA
66 CAACGGAGTCGCCAAGCTGTCAGAACCGTCTTTCGGGTGGGCTCAAAATTGGGCTTCGACTTGGA
* *
4888163 TTAAGTGTATTAGGAGTCACCACCGATCATTTATTTTAAAACAAATAGGTTGATCAGATACCTTT
131 TTAAGTGTATTAGGAGTCACCACCGATCATTTATTTTAAAACAAATAGGTTGATCAGATACATAT
4888228 ATTTCTTACATGATCTGCGTTTTACCAGTGATATGTCGGATTCAGGAGTCGATTACAGTCAAGGA
196 ATTTCTTACATGATCTGCGTTTTACCAGTGATATGTCGGATTCAGGAGTCGATTACAGTCAAGGA
* *
4888293 ATGGTTAGCACCCTTGAACTGCCCTTTCGGTACTACTTAATTTCCATTTGTCTTTAATTAAGAAA
261 AGGGTTAGCACCCTTGAACTGCCCTTTCAGTACTACTTAATTTCCATTTGTCTTTAATTAAGAAA
4888358 ATTGAAAGTTAAATTTAAAGGTAAAATATGATCCAAGTTACTTACCTCTGATCAATTGAAACACC
326 ATTGAAAGTTAAATTTAAAGGTAAAATATGATCCAAGTTACTTACCTCTGATCAATTGAAACACC
4888423 CTTAAAAAATGTTAGAGTTGTAGTGAAGTATAGAATCGAGTTAAGACAGAAAGTGCGCACATATG
391 CTTAAAAAATGTTAGAGTTGTAGTGAAGTATAGAATCGAGTTAAGACAGAAAGTGCGCACATATG
4888488 AAAATAATAAACACAAAAACGAAGAAAAATAATAATAAAATAAGTAGAAATAAAAATAAAACAAA
456 AAAATAATAAACACAAAAACGAAGAAAAATAATAATAAAATAAGTAGAAATAAAAATAAAACAAA
4888553 ATAAACAAAATGTTAACATAAATAAAAATAAAACAAGAATAAAAAACCTAGGAAAAAATTGGAAT
521 ATAAACAAAATGTTAACATAAATAAAAATAAAACAAGAATAAAAAACCTAGGAAAAAATTGGAAT
* * *
4888618 TAAATAAAAAAATAGAAATAAAATAAAACAAAATAATAATAATAATAAATAATAGAAAATAATAG
586 TAAATAAAAAAATA-AAACAAAATAAAAC-AAA-AA-AATAATAAT-AATAA-ATAAAA-GA-A-
4888683 AAATAATAAAAATAATATATACATATAATATAGTATTAAATAA
642 AAATAATAAAAATAATATATACATATAATATAGTATTAAATAA
* * * *
4888726 AAAATTACCCTTTTCGTTAAAAAGATAACTGGAAATTACCTTAGCCTGACTCACTTACCTGTTCC
1 AAAATTACACTTTTCGTTAAAAAGACAACTGGAAATTACCTTAGCCTGACTCACTTACATGTCCC
* *
4888791 CAGCGGAGTTGCCAAGCTGTCAGAACCGTCTTTCGGGTGGGCTCAAAATTGGGCTTCGACTTGGA
66 CAACGGAGTCGCCAAGCTGTCAGAACCGTCTTTCGGGTGGGCTCAAAATTGGGCTTCGACTTGGA
* *
4888856 TTAAGTGTATTAGGAGTCGCCACCGATCATTTATTTTAAAACAAATAGGTTGATCATATACATAT
131 TTAAGTGTATTAGGAGTCACCACCGATCATTTATTTTAAAACAAATAGGTTGATCAGATACATAT
* *
4888921 ATTTCTTACATTATCTGCGTTTTACCAGTGATATGTCGGATTCAGGAGTCGATTATAGTCAAGGA
196 ATTTCTTACATGATCTGCGTTTTACCAGTGATATGTCGGATTCAGGAGTCGATTACAGTCAAGGA
4888986 AGGGTTAGCACCCTTGAACTGCCCTTTCAGTACTACTTAATTTCCATTTGTCTTTAATTAAGAAA
261 AGGGTTAGCACCCTTGAACTGCCCTTTCAGTACTACTTAATTTCCATTTGTCTTTAATTAAGAAA
*
4889051 ATTGAAAGTTAAATTTAAAGGTAAAATATGATCCAAGTTACTTACCTCTGATCGATTGAAACACC
326 ATTGAAAGTTAAATTTAAAGGTAAAATATGATCCAAGTTACTTACCTCTGATCAATTGAAACACC
4889116 CTT-AAAAATGTTAGAGTTGTAGTGAAGTATAGAATCGAGTTAAGACAGAAAGTGCGCACATATG
391 CTTAAAAAATGTTAGAGTTGTAGTGAAGTATAGAATCGAGTTAAGACAGAAAGTGCGCACATATG
4889180 AAAATAATAAACACAAAAACGAAGAAAAATAATAATAAAATAAGTAGAAATAAAAATAAAACAAA
456 AAAATAATAAACACAAAAACGAAGAAAAATAATAATAAAATAAGTAGAAATAAAAATAAAACAAA
*
4889245 ATAAACAAAATGTTAACATAAATAAAAATTAAACAAGAATAAAAAAACC-AGGAAAAAAATTGGA
521 ATAAACAAAATGTTAACATAAATAAAAATAAAACAAGAAT-AAAAAACCTAGG-AAAAAATTGGA
4889309 ATTAAATAAAAAACAT-AAACAAAATAAAACAAAAAAATAATAATAATAAATAAAAGAAAAATAA
584 ATTAAATAAAAAA-ATAAAACAAAATAAAACAAAAAAATAATAATAATAAATAAAAGAAAAATAA
4889373 TAAAAATAATATATACATATAATATAGTATTAAATAA
648 TAAAAATAATATATACATATAATATAGTATTAAATAA
4889410 AA
1 AA
4889412 CAAGTGAAAA
Statistics
Matches: 663, Mismatches: 20, Indels: 15
0.95 0.03 0.02
Matches are distributed among these distances:
684 45 0.07
685 1 0.00
686 1 0.00
687 5 0.01
688 5 0.01
689 9 0.01
690 2 0.00
691 3 0.00
692 181 0.27
693 409 0.62
694 2 0.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (684 bp):
AAAATTACACTTTTCGTTAAAAAGACAACTGGAAATTACCTTAGCCTGACTCACTTACATGTCCC
CAACGGAGTCGCCAAGCTGTCAGAACCGTCTTTCGGGTGGGCTCAAAATTGGGCTTCGACTTGGA
TTAAGTGTATTAGGAGTCACCACCGATCATTTATTTTAAAACAAATAGGTTGATCAGATACATAT
ATTTCTTACATGATCTGCGTTTTACCAGTGATATGTCGGATTCAGGAGTCGATTACAGTCAAGGA
AGGGTTAGCACCCTTGAACTGCCCTTTCAGTACTACTTAATTTCCATTTGTCTTTAATTAAGAAA
ATTGAAAGTTAAATTTAAAGGTAAAATATGATCCAAGTTACTTACCTCTGATCAATTGAAACACC
CTTAAAAAATGTTAGAGTTGTAGTGAAGTATAGAATCGAGTTAAGACAGAAAGTGCGCACATATG
AAAATAATAAACACAAAAACGAAGAAAAATAATAATAAAATAAGTAGAAATAAAAATAAAACAAA
ATAAACAAAATGTTAACATAAATAAAAATAAAACAAGAATAAAAAACCTAGGAAAAAATTGGAAT
TAAATAAAAAAATAAAACAAAATAAAACAAAAAAATAATAATAATAAATAAAAGAAAAATAATAA
AAATAATATATACATATAATATAGTATTAAATAA
Found at i:4889379 original size:9 final size:9
Alignment explanation
Indices: 4889312--4889383 Score: 51
Period size: 9 Copynumber: 7.9 Consensus size: 9
4889302 AATTGGAATT
4889312 AAATAA-AA
1 AAATAATAA
4889320 AACATAA-ACA
1 AA-ATAATA-A
*
4889330 AAATAAAACA
1 AAATAATA-A
*
4889340 AAAAAATAA
1 AAATAATAA
*
4889349 TAATAATAA
1 AAATAATAA
*
4889358 ATAA-AAGAA
1 A-AATAATAA
4889367 AAATAATAA
1 AAATAATAA
4889376 AAATAATA
1 AAATAATA
4889384 TATACATATA
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
8 4 0.08
9 34 0.65
10 14 0.27
ACGTcount: A:0.78, C:0.04, G:0.01, T:0.17
Consensus pattern (9 bp):
AAATAATAA
Found at i:4889380 original size:27 final size:26
Alignment explanation
Indices: 4889330--4889383 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4889320 AACATAAACA
*
4889330 AAATAAAACAAAAAAATAATAATAAT
1 AAATAAAACAAAAAAATAAAAATAAT
*
4889356 AAATAAAAGAAAAATAATAAAAATAAT
1 AAATAAAACAAAAA-AATAAAAATAAT
4889383 A
1 A
4889384 TATACATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.19
Consensus pattern (26 bp):
AAATAAAACAAAAAAATAAAAATAAT
Found at i:4889726 original size:17 final size:15
Alignment explanation
Indices: 4889675--4889727 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
4889665 AAAAATAACC
*
4889675 AAATAAATATAATTA
1 AAATATATATAATTA
4889690 AAATATATAT-ATTA
1 AAATATATATAATTA
*
4889704 ATAATAGGTATATAAATA
1 A-AATA--TATATAATTA
4889722 AAATAT
1 AAATAT
4889728 TTTAAAAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
14 5 0.16
15 14 0.44
17 9 0.28
18 4 0.12
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (15 bp):
AAATATATATAATTA
Found at i:4889837 original size:5 final size:5
Alignment explanation
Indices: 4889827--4889897 Score: 60
Period size: 5 Copynumber: 14.4 Consensus size: 5
4889817 GAAAGTAAAA
*
4889827 ATAAT ATAAT ATAAT ATAAGA ATAAT ATAA- ATAA- ATAA- ATAAT AT-AT
1 ATAAT ATAAT ATAAT ATAA-T ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
* *
4889874 ATATGT AATAAT AAAAT ATAAT AT
1 ATA-AT -ATAAT ATAAT ATAAT AT
4889898 TTAAATAAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
4 16 0.29
5 30 0.55
6 6 0.11
7 3 0.05
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:4889864 original size:8 final size:9
Alignment explanation
Indices: 4889825--4889914 Score: 64
Period size: 8 Copynumber: 9.9 Consensus size: 9
4889815 GAGAAAGTAA
4889825 AAATAATAT
1 AAATAATAT
4889834 AATATAATAT
1 AA-ATAATAT
4889844 AAGAATAATAT
1 -A-AATAATAT
4889855 AAATAA-AT
1 AAATAATAT
4889863 AAATAATAT
1 AAATAATAT
* *
4889872 ATAT-ATGT
1 AAATAATAT
*
4889880 -AATAATAA
1 AAATAATAT
4889888 AATATAATATTT
1 AA-ATAATA--T
4889900 AAATAA-AT
1 AAATAATAT
4889908 AAA-AATA
1 AAATAATA
4889915 AGAAACAAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 21
0.71 0.07 0.23
Matches are distributed among these distances:
7 4 0.06
8 18 0.28
9 13 0.20
10 15 0.23
11 12 0.18
12 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (9 bp):
AAATAATAT
Found at i:4889915 original size:21 final size:19
Alignment explanation
Indices: 4889822--4889915 Score: 82
Period size: 21 Copynumber: 4.5 Consensus size: 19
4889812 AAAGAGAAAG
4889822 TAAAAATAATATAATATAATA
1 TAAAAATAATATAA-ATAA-A
*
4889843 TAAGAATAATATAAATAAA
1 TAAAAATAATATAAATAAA
4889862 TAAATAATATATATATGTAAT-AA
1 TAAA-AATA-ATATA---AATAAA
4889885 TAAAATATAATATTTAAATAAA
1 TAAAA-ATAATA--TAAATAAA
4889907 TAAAAATAA
1 TAAAAATAA
4889916 GAAACAAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 18
0.76 0.02 0.22
Matches are distributed among these distances:
19 4 0.06
20 8 0.13
21 25 0.40
22 11 0.18
23 9 0.15
24 5 0.08
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
TAAAAATAATATAAATAAA
Found at i:4891045 original size:12 final size:12
Alignment explanation
Indices: 4891003--4891047 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
4890993 TAAACAAATG
4891003 TATAT-ATATAT
1 TATATAATATAT
4891014 TATATAATATAGT
1 TATATAATATA-T
*
4891027 T-TGTAATATAT
1 TATATAATATAT
4891038 TATATAATAT
1 TATATAATAT
4891048 CAATGGACGA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
11 7 0.24
12 20 0.69
13 2 0.07
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (12 bp):
TATATAATATAT
Found at i:4892498 original size:35 final size:35
Alignment explanation
Indices: 4892459--4892539 Score: 162
Period size: 35 Copynumber: 2.3 Consensus size: 35
4892449 AAAATTTATA
4892459 AAATTTATTTATGTTTATGATGTCATCATATTTTT
1 AAATTTATTTATGTTTATGATGTCATCATATTTTT
4892494 AAATTTATTTATGTTTATGATGTCATCATATTTTT
1 AAATTTATTTATGTTTATGATGTCATCATATTTTT
4892529 AAATTTATTTA
1 AAATTTATTTA
4892540 AATTGAGCCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.57
Consensus pattern (35 bp):
AAATTTATTTATGTTTATGATGTCATCATATTTTT
Found at i:4896621 original size:31 final size:31
Alignment explanation
Indices: 4896583--4896654 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
4896573 ACTTTTAAAA
* *
4896583 TTTGCAATATAGTCCCCTAATATTTAGTTCG
1 TTTGCAATATAGTCCCCCAACATTTAGTTCG
* *
4896614 TTTGCAATACAGTCCCCCAACATTTAGTTTG
1 TTTGCAATATAGTCCCCCAACATTTAGTTCG
*
4896645 ATTGCAATAT
1 TTTGCAATAT
4896655 GACCCCCGAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.39
Consensus pattern (31 bp):
TTTGCAATATAGTCCCCCAACATTTAGTTCG
Found at i:4898707 original size:31 final size:31
Alignment explanation
Indices: 4898643--4898708 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
4898633 TCAGGGACCA
*
4898643 TATTGCAAACGGACTAAATGTTGGGAGATTG
1 TATTGCAAACGGACTAAATGTTGGGAGACTG
* *
4898674 TATTGCAAACGTATTAAATGTTGTGG-GACTG
1 TATTGCAAACGGACTAAATGTTG-GGAGACTG
4898705 TATT
1 TATT
4898709 ATAAGTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 29 0.94
32 2 0.06
ACGTcount: A:0.30, C:0.09, G:0.26, T:0.35
Consensus pattern (31 bp):
TATTGCAAACGGACTAAATGTTGGGAGACTG
Found at i:4899334 original size:21 final size:21
Alignment explanation
Indices: 4899285--4899334 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
4899275 TAATAATACT
4899285 TTTTATTTTATTATTATAATA
1 TTTTATTTTATTATTATAATA
* * **
4899306 TTTCATTTTATTTTTATTCTA
1 TTTTATTTTATTATTATAATA
4899327 TTTTATTT
1 TTTTATTT
4899335 ACTCTTAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATTTTATTATTATAATA
Found at i:4899889 original size:21 final size:22
Alignment explanation
Indices: 4899865--4899905 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
4899855 ATTTTTCAAA
*
4899865 TAAAAGTT-ATAATTATTTTTT
1 TAAAACTTAATAATTATTTTTT
*
4899886 TAAAACTTAATAATTGTTTT
1 TAAAACTTAATAATTATTTT
4899906 AAAAAAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (22 bp):
TAAAACTTAATAATTATTTTTT
Found at i:4914587 original size:9 final size:9
Alignment explanation
Indices: 4914568--4914619 Score: 97
Period size: 9 Copynumber: 5.9 Consensus size: 9
4914558 TTTTAAGAGT
4914568 TAAAA-TAA
1 TAAAATTAA
4914576 TAAAATTAA
1 TAAAATTAA
4914585 TAAAATTAA
1 TAAAATTAA
4914594 TAAAATTAA
1 TAAAATTAA
4914603 TAAAATTAA
1 TAAAATTAA
4914612 TAAAATTA
1 TAAAATTA
4914620 GAGGATCAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
8 5 0.12
9 38 0.88
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TAAAATTAA
Found at i:4915052 original size:23 final size:22
Alignment explanation
Indices: 4915026--4915069 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
4915016 TAAAAAATAA
*
4915026 TAATATTTCTAATAACATATTTC
1 TAATATTTCTAAAAACA-ATTTC
4915049 TAATATTTCTAAAAACAATTT
1 TAATATTTCTAAAAACAATTT
4915070 ATTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATATTTCTAAAAACAATTTC
Found at i:4915825 original size:9 final size:9
Alignment explanation
Indices: 4915806--4915857 Score: 97
Period size: 9 Copynumber: 5.9 Consensus size: 9
4915796 TTTTAAGAGT
4915806 TAAAA-TAA
1 TAAAATTAA
4915814 TAAAATTAA
1 TAAAATTAA
4915823 TAAAATTAA
1 TAAAATTAA
4915832 TAAAATTAA
1 TAAAATTAA
4915841 TAAAATTAA
1 TAAAATTAA
4915850 TAAAATTA
1 TAAAATTA
4915858 GAGGATCAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
8 5 0.12
9 38 0.88
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TAAAATTAA
Found at i:4916292 original size:23 final size:22
Alignment explanation
Indices: 4916266--4916309 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
4916256 TAAAAAATAA
*
4916266 TAATATTTCTAATAACATATTTC
1 TAATATTTCTAAAAACA-ATTTC
4916289 TAATATTTCTAAAAACAATTT
1 TAATATTTCTAAAAACAATTT
4916310 ATTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATATTTCTAAAAACAATTTC
Found at i:4917065 original size:9 final size:9
Alignment explanation
Indices: 4917046--4917124 Score: 151
Period size: 9 Copynumber: 8.9 Consensus size: 9
4917036 TTTTAAGAGT
4917046 TAAAA-TAA
1 TAAAATTAA
4917054 TAAAATTAA
1 TAAAATTAA
4917063 TAAAATTAA
1 TAAAATTAA
4917072 TAAAATTAA
1 TAAAATTAA
4917081 TAAAATTAA
1 TAAAATTAA
4917090 TAAAATTAA
1 TAAAATTAA
4917099 TAAAATTAA
1 TAAAATTAA
4917108 TAAAATTAA
1 TAAAATTAA
4917117 TAAAATTA
1 TAAAATTA
4917125 GAGGATCAAA
Statistics
Matches: 70, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
8 5 0.07
9 65 0.93
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TAAAATTAA
Found at i:4919966 original size:2 final size:2
Alignment explanation
Indices: 4919954--4919983 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
4919944 ATTTTAAAAT
*
4919954 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4919984 AAATCATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4920121 original size:75 final size:75
Alignment explanation
Indices: 4919998--4920192 Score: 266
Period size: 75 Copynumber: 2.6 Consensus size: 75
4919988 CATAAATAAA
* *
4919998 GTCAAATATCAAGACTCAAACCACAATATTAAGTTTAGAATGATAAAATCCATAAACAAACCACA
1 GTCAAATATCAAGACTCAAACCACAATATTAAGTCTAGAATAATAAAATCCATAAACAAACCACA
4920063 ATATCAAAAT
66 ATATCAAAAT
* * * * * *
4920073 GTCAAATTTCAAGATTCAAACCACAATATTAACTCTAGAATAATAAAATCCATAATCAAATCATA
1 GTCAAATATCAAGACTCAAACCACAATATTAAGTCTAGAATAATAAAATCCATAAACAAACCACA
* *
4920138 ATATTAAAGT
66 ATATCAAAAT
* *
4920148 GTCAAATCAT-AAGACTCAAACCATAATATTAAGTCTAGAAAAATA
1 GTCAAAT-ATCAAGACTCAAACCACAATATTAAGTCTAGAATAATA
4920193 TTAAACCAAA
Statistics
Matches: 104, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
75 103 0.99
76 1 0.01
ACGTcount: A:0.51, C:0.17, G:0.07, T:0.26
Consensus pattern (75 bp):
GTCAAATATCAAGACTCAAACCACAATATTAAGTCTAGAATAATAAAATCCATAAACAAACCACA
ATATCAAAAT
Found at i:4924499 original size:29 final size:30
Alignment explanation
Indices: 4924442--4924513 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
4924432 GAAAACGGTC
***
4924442 GAGTGAGCAAAATGATTTGATTGTAAAGTT
1 GAGTGAGCAAAATGATCAAATTGTAAAGTT
* *
4924472 TAGTGAGCAAATTGATCAAATTG-AAAGTT
1 GAGTGAGCAAAATGATCAAATTGTAAAGTT
*
4924501 GAGTGAGGAAAAT
1 GAGTGAGCAAAAT
4924514 AGGAGGGAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
29 16 0.47
30 18 0.53
ACGTcount: A:0.40, C:0.04, G:0.26, T:0.29
Consensus pattern (30 bp):
GAGTGAGCAAAATGATCAAATTGTAAAGTT
Found at i:4924620 original size:45 final size:44
Alignment explanation
Indices: 4924568--4924688 Score: 136
Period size: 45 Copynumber: 2.7 Consensus size: 44
4924558 TTATTTATTG
* *
4924568 GGTTGCCAAAAGTAAAATCAAAGGATTAGTT-CTATTTGATTACT
1 GGTTGCCAAAAATAAAATCAAAGGATTAGTTCCT-TTCGATTACT
* * *
4924612 GAGTTGCCAAAATTTAAATCAAAGGATTAGTTCCTTTCGATTATT
1 G-GTTGCCAAAAATAAAATCAAAGGATTAGTTCCTTTCGATTACT
** *
4924657 GGATTGTGAAAAATAAAATCAAATGATTAGTT
1 GG-TTGCCAAAAATAAAATCAAAGGATTAGTT
4924689 TCCTGTGATT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
44 2 0.03
45 61 0.94
46 2 0.03
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (44 bp):
GGTTGCCAAAAATAAAATCAAAGGATTAGTTCCTTTCGATTACT
Found at i:4925036 original size:57 final size:58
Alignment explanation
Indices: 4924870--4925040 Score: 240
Period size: 58 Copynumber: 3.0 Consensus size: 58
4924860 TTCTAATTTT
* * * *
4924870 GTAAGAAAAATAAATAGTTGAATTTATTTCCTTGAGAATCTTGAATGATTCTAAATTT
1 GTAAGGAAAATAAATTGTTGAATTTATTTCCTTGAGAATCTTGAATGATTTTAAATTC
*
4924928 GTAAGGAAAATAAATTGTTAAATTTATTTCCTTGAGAATCTTGAATGATTTTAAATTC
1 GTAAGGAAAATAAATTGTTGAATTTATTTCCTTGAGAATCTTGAATGATTTTAAATTC
* *
4924986 GTAAGG-AAATAAATTGTCGAATTTATTT-CTTGAGAATCGATTGTAT-ATTTTAAAT
1 GTAAGGAAAATAAATTGTTGAATTTATTTCCTTGAGAATC--TTGAATGATTTTAAAT
4925041 AATCTTAAAT
Statistics
Matches: 103, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
56 10 0.10
57 29 0.28
58 64 0.62
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.41
Consensus pattern (58 bp):
GTAAGGAAAATAAATTGTTGAATTTATTTCCTTGAGAATCTTGAATGATTTTAAATTC
Found at i:4925157 original size:39 final size:38
Alignment explanation
Indices: 4925063--4925246 Score: 137
Period size: 38 Copynumber: 4.8 Consensus size: 38
4925053 TTCTATTTTG
* *
4925063 TAAAAGGAAATAAA-CTGTTGAATTTATTTTCCTATTT-
1 TAAAAGAAAATAAATC-GTTAAATTTATTTTCCTATTTA
* *
4925100 TGGAAA-AAAATAAATCGTTAAATTTATTTTCCTGGTTTA
1 T-AAAAGAAAATAAATCGTTAAATTTATTTTCCT-ATTTA
** * *
4925139 TAAAAGAAAATAAATCGTT-GGTTTATTTTTCTGTTTTA
1 TAAAAGAAAATAAATCGTTAAATTTATTTTCCT-ATTTA
* * *
4925177 TAAAATG-AAATAAATTG-TATATATTATTTTCCTATTTT
1 TAAAA-GAAAATAAATCGTTAAAT-TTATTTTCCTATTTA
* * *
4925215 TAAAAAAGAAATAAATCATTGAATTTATTTTC
1 TAAAAGA-AAATAAATCGTTAAATTTATTTTC
4925247 TTAAGAATAT
Statistics
Matches: 116, Mismatches: 20, Indels: 20
0.74 0.13 0.13
Matches are distributed among these distances:
37 25 0.22
38 48 0.41
39 40 0.34
40 3 0.03
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.44
Consensus pattern (38 bp):
TAAAAGAAAATAAATCGTTAAATTTATTTTCCTATTTA
Found at i:4925177 original size:38 final size:40
Alignment explanation
Indices: 4925106--4925246 Score: 123
Period size: 39 Copynumber: 3.6 Consensus size: 40
4925096 ATTTTGGAAA
4925106 AAAATAAATCGTTAAATTTATTTTCCTGGTTTATAAAA-G
1 AAAATAAATCGTTAAATTTATTTTCCTGGTTTATAAAATG
** * *
4925145 AAAATAAATCGTT-GGTTTATTTTTCTGTTTTATAAAATG
1 AAAATAAATCGTTAAATTTATTTTCCTGGTTTATAAAATG
* * * * *
4925184 -AAATAAATTG-TATATATTATTTTCCT-ATTTTTAAAA-A
1 AAAATAAATCGTTAAAT-TTATTTTCCTGGTTTATAAAATG
* *
4925221 AGAAATAAATCATTGAATTTATTTTC
1 A-AAATAAATCGTTAAATTTATTTTC
4925247 TTAAGAATAT
Statistics
Matches: 81, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
37 1 0.01
38 38 0.47
39 39 0.48
40 3 0.04
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (40 bp):
AAAATAAATCGTTAAATTTATTTTCCTGGTTTATAAAATG
Found at i:4925246 original size:77 final size:75
Alignment explanation
Indices: 4925055--4925247 Score: 180
Period size: 77 Copynumber: 2.5 Consensus size: 75
4925045 TTAAATGATT
* *
4925055 CTATTTTGT-AAAAGGAAATAAA-CTGTTGAATTTATTTTCCTATTTTGGAAAAAAATAAATCGT
1 CTATTTT-TAAAAAAGAAATAAATC-GTTGAATTTATTTT-CTATTTTAGAAAAAAATAAATCGT
4925118 TAAATTTATTTTC
63 TAAATTTATTTTC
** * * * * *
4925131 CT-GGTTTATAAAAGAAAATAAATCGTTG-GTTTATTTTTCTGTTTTATAAAATGAAATAAATTG
1 CTATTTTTAAAAAAG-AAATAAATCGTTGAATTTA-TTTTCTATTTTAGAAAA--AAATAAATCG
*
4925194 -TATATATTATTTTC
62 TTAAAT-TTATTTTC
*
4925208 CTATTTTTAAAAAAGAAATAAATCATTGAATTTATTTTCT
1 CTATTTTTAAAAAAGAAATAAATCGTTGAATTTATTTTCT
4925248 TAAGAATATT
Statistics
Matches: 93, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
74 1 0.01
75 20 0.22
76 21 0.23
77 38 0.41
78 13 0.14
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (75 bp):
CTATTTTTAAAAAAGAAATAAATCGTTGAATTTATTTTCTATTTTAGAAAAAAATAAATCGTTAA
ATTTATTTTC
Found at i:4925316 original size:40 final size:39
Alignment explanation
Indices: 4925272--4925347 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 39
4925262 GATTTTGATA
* *
4925272 TGTAAAAGGAAATAAATCGTAAAATTTATTTTTCCTATTT
1 TGTAAAAAGAAATAAATAGTAAAATTTA-TTTTCCTATTT
**
4925312 TGTAAAAAGAAATAAATAGTTGAATTTATTTTCCTA
1 TGTAAAAAGAAATAAATAGTAAAATTTATTTTCCTA
4925348 AGAATCTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
39 8 0.25
40 24 0.75
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.41
Consensus pattern (39 bp):
TGTAAAAAGAAATAAATAGTAAAATTTATTTTCCTATTT
Found at i:4925350 original size:98 final size:96
Alignment explanation
Indices: 4925177--4925425 Score: 349
Period size: 98 Copynumber: 2.6 Consensus size: 96
4925167 TTCTGTTTTA
* * *
4925177 TAAAATGAAATAAATTGT-ATATATTATTTTCCTATTTTTAAAAAAGAAATAAATCATTGAATTT
1 TAAAAGGAAATAAATCGTAAAAT-TTATTTTCCTATTTTT-AAAAAGAAATAAATCATTGAATTT
* *
4925241 ATTTTCTTAAGAATATTATATGATTTTGATATG
64 ATTTTCCTAAGAATATTATATGATTCTGATATG
4925274 TAAAAGGAAATAAATCGTAAAATTTATTTTTCCTATTTTGTAAAAAGAAATAAAT-AGTTGAATT
1 TAAAAGGAAATAAATCGTAAAATTTA-TTTTCCTATTTT-TAAAAAGAAATAAATCA-TTGAATT
*
4925338 TATTTTCCTAAGAATCTTATATGATTCTGATATG
63 TATTTTCCTAAGAATATTATATGATTCTGATATG
* * *
4925372 TAAAAGGAAATAAATCGTAGAATTTGTTTTCTTATTTTATAAAAAGAAATAAAT
1 TAAAAGGAAATAAATCGTAAAATTTATTTTCCTATTTT-TAAAAAGAAATAAAT
4925426 TTTTTGATTT
Statistics
Matches: 138, Mismatches: 10, Indels: 8
0.88 0.06 0.05
Matches are distributed among these distances:
97 46 0.33
98 91 0.66
99 1 0.01
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.42
Consensus pattern (96 bp):
TAAAAGGAAATAAATCGTAAAATTTATTTTCCTATTTTTAAAAAGAAATAAATCATTGAATTTAT
TTTCCTAAGAATATTATATGATTCTGATATG
Found at i:4925415 original size:39 final size:39
Alignment explanation
Indices: 4925372--4925484 Score: 140
Period size: 39 Copynumber: 2.9 Consensus size: 39
4925362 TTCTGATATG
* * *
4925372 TAAAAGGAAATAAATCGTAGAATTTGTTTTCTTATTTTA
1 TAAAAGGAAATAAATTGTTGAATTTATTTTCTTATTTTA
* * *
4925411 TAAAAAGAAATAAATTTTTTG-ATTTATTTT-TCTATTTTG
1 TAAAAGGAAATAAA-TTGTTGAATTTATTTTCT-TATTTTA
4925450 TAAAAGGAAATAAATTGTTGAATTTATTTTCTTAT
1 TAAAAGGAAATAAATTGTTGAATTTATTTTCTTAT
4925485 GAATCTTATA
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
38 6 0.10
39 52 0.84
40 4 0.06
ACGTcount: A:0.38, C:0.04, G:0.11, T:0.48
Consensus pattern (39 bp):
TAAAAGGAAATAAATTGTTGAATTTATTTTCTTATTTTA
Found at i:4925415 original size:137 final size:137
Alignment explanation
Indices: 4925274--4925617 Score: 505
Period size: 137 Copynumber: 2.5 Consensus size: 137
4925264 TTTTGATATG
* *** *
4925274 TAAAAGGAAATAAATCGTAAAATTTATTTTTCCTATTTTGTAAAAAGAAATAAATAGTTGAATTT
1 TAAAAAGAAATAAATCGTTTGATTTATTTTTCCTATTTTGTAAAAGGAAATAAATAGTTGAATTT
*
4925339 ATTTTCCTAAGAATCTTATATGATTCTGATATGTAAAAGGAAATAAATCGTAGAATT-TGTTTTC
66 ATTTTCCTAAGAATCTTATATGATTCTAATATGTAAAAGGAAATAAATCGTAGAATTAT-TTTTC
4925403 TTATTTTA
130 TTATTTTA
** *
4925411 TAAAAAGAAATAAATTTTTTGATTTATTTTT-CTATTTTGTAAAAGGAAATAAATTGTTGAATTT
1 TAAAAAGAAATAAATCGTTTGATTTATTTTTCCTATTTTGTAAAAGGAAATAAATAGTTGAATTT
* * * *
4925475 ATTTTCTTATGAATCTTATATGATTCTAATATGTAAAAGGATATTAATCGTAGAATTAATTTTTC
66 ATTTTCCTAAGAATCTTATATGATTCTAATATGTAAAAGGAAATAAATCGTAGAATT-ATTTTTC
*
4925540 TTATTTTG
130 TTATTTTA
* *
4925548 TAAAAAGAAATAAATCGTTTGATTTA-TTTTCCTATTTTGTAAAAGGAAATAAATCGTTTAATTT
1 TAAAAAGAAATAAATCGTTTGATTTATTTTTCCTATTTTGTAAAAGGAAATAAATAGTTGAATTT
4925612 ATTTTC
66 ATTTTC
4925618 TTATTTTATA
Statistics
Matches: 186, Mismatches: 18, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
136 87 0.47
137 98 0.53
138 1 0.01
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (137 bp):
TAAAAAGAAATAAATCGTTTGATTTATTTTTCCTATTTTGTAAAAGGAAATAAATAGTTGAATTT
ATTTTCCTAAGAATCTTATATGATTCTAATATGTAAAAGGAAATAAATCGTAGAATTATTTTTCT
TATTTTA
Found at i:4925454 original size:176 final size:174
Alignment explanation
Indices: 4925272--4926002 Score: 579
Period size: 176 Copynumber: 4.2 Consensus size: 174
4925262 GATTTTGATA
**
4925272 TGTAAAAGGAAATAAATCGTAAAATTTATTTTTCCTATTTTGTAAAAAGAAATAAATAGTTGAAT
1 TGTAAAAGGAAATAAATCGTTGAATTTA-TTTTCCTATTTTGTAAAAAGAAATAAATAGTTGAAT
*
4925337 TTATTTTCCTAAGAATCTTATATGATTCTGATATGTAAAAGGAAATAAATCG-TAGAATTTGTTT
65 TTATTTTCCT-AGAATCTTATATGATTCTGATATGTAAAAGGAAATAAATCGTTAG-ATTTATTT
* * *
4925401 TCTTATTTTATAAAAAGAAATAAATTTTTTGATTTATTTT-TCTATTT
128 TCCTATTTTGTAAAAGGAAATAAATTTTTTGATTTATTTTCT-TATTT
* * ** * * * * * * **
4925448 TGTAAAAGGAAATAAATTGTTGAATTTATTTTCTTATGAATCTTATATG-ATTCTAATATGTAAA
1 TGTAAAAGGAAATAAATCGTTGAATTTATTTTCCTAT-TTTGTAAAAAGAAAT-AAATA-GTTGA
** * * ** * * * *
4925512 AGGATATTAATCGTAGAA--TTA-ATTTTTCTTATTTTGTAAAAAGAAATAAATCGTTTGATTTA
63 A-TTTATT-TTCCTAGAATCTTATATGATTCTGA-TATGTAAAAGGAAATAAATCGTTAGATTTA
** *
4925574 TTTTCCTATTTTGTAAAAGGAAATAAATCGTTTAATTTATTTTCTTATTT
125 TTTTCCTATTTTGTAAAAGGAAATAAATTTTTTGATTTATTTTCTTATTT
* * * * * *
4925624 TATAAAAGGAAATAAATCATTTG-ATTTATTTTCCTAGTTTGTAAAAAGAAATAAATTGTTGGAC
1 TGTAAAAGGAAATAAATC-GTTGAATTTATTTTCCTATTTTGTAAAAAGAAATAAATAGTTGAAT
* ** **** * * *
4925688 TTATTTTCCT---ATCTTGTAAAAGGAAGTAAATCTAAAAGGAAATAACTCGTTAGATTTATTTT
65 TTATTTTCCTAGAATCTTATATGATTCTG-ATATGTAAAAGGAAATAAATCGTTAGATTTATTTT
* * *
4925750 CCTAGTTTGTAAAAGGAAATAAA-TTGTAGAATTTATTTTCTTATTT
129 CCTATTTTGTAAAAGGAAATAAATTTTTTG-ATTTATTTTCTTATTT
* * * *
4925796 TGTAAAAGAAAATAAATCGTTGGATTTATTTTCCTAGTTTTGT-AAAAGAAAACAAATTGTTGAA
1 TGTAAAAGGAAATAAATCGTTGAATTTATTTTCCTA-TTTTGTAAAAAG-AAATAAATAGTTGAA
* * * * * * *
4925860 TTTATTTTCTTGAGAATCTTACATGATTCTGGTTTGTAAAAGGAAATAAACCATTATATTTATTT
64 TTTATTTTCCT-AGAATCTTATATGATTCTGATATGTAAAAGGAAATAAATCGTTAGATTTATTT
* * * * * * *
4925925 TCATGTTTTG-AAAAGGAAAATAAACTGTTAGATTTATTTTCCTGTTT
128 TCCTATTTTGTAAAAGG-AAATAAATTTTTTGATTTATTTTCTTATTT
* * *
4925972 TGAAAAAGGAAATAACTTGTTGAATTTATTT
1 TGTAAAAGGAAATAAATCGTTGAATTTATTT
4926003 CCTTGATAAT
Statistics
Matches: 422, Mismatches: 109, Indels: 48
0.73 0.19 0.08
Matches are distributed among these distances:
169 1 0.00
171 6 0.01
172 104 0.25
173 32 0.08
174 3 0.01
175 31 0.07
176 212 0.50
177 22 0.05
178 8 0.02
179 3 0.01
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.43
Consensus pattern (174 bp):
TGTAAAAGGAAATAAATCGTTGAATTTATTTTCCTATTTTGTAAAAAGAAATAAATAGTTGAATT
TATTTTCCTAGAATCTTATATGATTCTGATATGTAAAAGGAAATAAATCGTTAGATTTATTTTCC
TATTTTGTAAAAGGAAATAAATTTTTTGATTTATTTTCTTATTT
Found at i:4925564 original size:40 final size:38
Alignment explanation
Indices: 4925506--4925719 Score: 230
Period size: 39 Copynumber: 5.5 Consensus size: 38
4925496 GATTCTAATA
* * * * *
4925506 TGTAAAAGGATATTAATCGTAGAATTAATTTTTCTTATTT
1 TGTAAAAGGAAATAAATCGTTG-ATTTA-TTTTCCTATTT
*
4925546 TGTAAAAAGAAATAAATCGTTTGATTTATTTTCCTATTT
1 TGTAAAAGGAAATAAATCG-TTGATTTATTTTCCTATTT
* *
4925585 TGTAAAAGGAAATAAATCGTTTAATTTATTTTCTTATTT
1 TGTAAAAGGAAATAAATCG-TTGATTTATTTTCCTATTT
* * *
4925624 TATAAAAGGAAATAAATCATTTGATTTATTTTCCTAGTT
1 TGTAAAAGGAAATAAATC-GTTGATTTATTTTCCTATTT
* * * *
4925663 TGTAAAAAGAAATAAATTGTTGGACTTATTTTCCTATCT
1 TGTAAAAGGAAATAAATCGTT-GATTTATTTTCCTATTT
*
4925702 TGTAAAAGGAAGTAAATC
1 TGTAAAAGGAAATAAATC
4925720 TAAAAGGAAA
Statistics
Matches: 147, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
38 2 0.01
39 123 0.84
40 20 0.14
41 2 0.01
ACGTcount: A:0.37, C:0.07, G:0.12, T:0.43
Consensus pattern (38 bp):
TGTAAAAGGAAATAAATCGTTGATTTATTTTCCTATTT
Found at i:4925589 original size:39 final size:39
Alignment explanation
Indices: 4925535--4925719 Score: 253
Period size: 39 Copynumber: 4.7 Consensus size: 39
4925525 TAGAATTAAT
* *
4925535 TTTTCTTATTTTGTAAAAAGAAATAAATCGTTTGATTTA
1 TTTTCCTATTTTGTAAAAGGAAATAAATCGTTTGATTTA
*
4925574 TTTTCCTATTTTGTAAAAGGAAATAAATCGTTTAATTTA
1 TTTTCCTATTTTGTAAAAGGAAATAAATCGTTTGATTTA
* * *
4925613 TTTTCTTATTTTATAAAAGGAAATAAATCATTTGATTTA
1 TTTTCCTATTTTGTAAAAGGAAATAAATCGTTTGATTTA
* * * * *
4925652 TTTTCCTAGTTTGTAAAAAGAAATAAATTGTTGGACTTA
1 TTTTCCTATTTTGTAAAAGGAAATAAATCGTTTGATTTA
* *
4925691 TTTTCCTATCTTGTAAAAGGAAGTAAATC
1 TTTTCCTATTTTGTAAAAGGAAATAAATC
4925720 TAAAAGGAAA
Statistics
Matches: 126, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 126 1.00
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.45
Consensus pattern (39 bp):
TTTTCCTATTTTGTAAAAGGAAATAAATCGTTTGATTTA
Found at i:4925618 original size:137 final size:136
Alignment explanation
Indices: 4925272--4926085 Score: 523
Period size: 136 Copynumber: 6.1 Consensus size: 136
4925262 GATTTTGATA
* *** *
4925272 TGTAAAAGGAAATAAATCGTAAAATTTATTTTTCCTATTTTGTAAAAAGAAATAAATAGTTGAAT
1 TGTAAAAAGAAATAAATCGTTTGATTTA-TTTTCCTATTTTGTAAAAGGAAATAAATAGTTGAAT
* * *
4925337 TTATTTTCCTAAGAATCTTATATGATTCTGATATGTAAAAGGAAATAAATCGTAGAATTTGTTTT
65 TTATTTTCTTATGAATCTTATATGATTCTAATATGTAAAAGGAAATAAATCGTAGAATTTGTTTT
4925402 CTTATTT
130 CTTATTT
* ** * *
4925409 TATAAAAAGAAATAAATTTTTTGATTTATTTTTCTATTTTGTAAAAGGAAATAAATTGTTGAATT
1 TGTAAAAAGAAATAAATCGTTTGATTTATTTTCCTATTTTGTAAAAGGAAATAAATAGTTGAATT
* *
4925474 TATTTTCTTATGAATCTTATATGATTCTAATATGTAAAAGGATATTAATCGTAGAATTAAT-TTT
66 TATTTTCTTATGAATCTTATATGATTCTAATATGTAAAAGGAAATAAATCGTAGAATT--TGTTT
4925538 TCTTATTT
129 TCTTATTT
* *
4925546 TGTAAAAAGAAATAAATCGTTTGATTTATTTTCCTATTTTGTAAAAGGAAATAAATCGTTTAATT
1 TGTAAAAAGAAATAAATCGTTTGATTTATTTTCCTATTTTGTAAAAGGAAATAAATAGTTGAATT
* * * * * ** *
4925611 TATTTTC-T-T--AT-TT-TAT-A----AA-A-G-GAAA-TAAATCATTTG-ATTTATTT-TCCT
66 TATTTTCTTATGAATCTTATATGATTCTAATATGTAAAAGGAAATAAATCGTA-GAATTTGT-TT
** *
4925659 AGTT-TGT
129 TCTTATTT
* * * * * * ***
4925666 A---AAAAGAAATAAATTGTTGGACTTATTTTCCTATCTTGTAAAAGGAAGTAAATCTAAAAGGA
1 TGTAAAAAGAAATAAATCGTTTGATTTATTTTCCTATTTTGTAAAAGGAAATAAA--T-AGTTGA
* ** * * * *
4925728 A-ATA-ACTCGTTA-G-AT-TTAT-T--TTCCTAGTTTGTAAAAGGAAATAAATTGTAGAATTTA
63 ATTTATTTTC-TTATGAATCTTATATGATT-CTAATATGTAAAAGGAAATAAATCGTAGAATTTG
4925785 TTTTCTTATTT
126 TTTTCTTATTT
* * * *
4925796 TGT-AAAAGAAAATAAATCGTTGGATTTATTTTCCTAGTTTTGTAAAAGAAAACAAATTGTTGAA
1 TGTAAAAAG-AAATAAATCGTTTGATTTATTTTCCTA-TTTTGTAAAAGGAAATAAATAGTTGAA
* ** * * * * *
4925860 TTTATTTTCTTGA-GAATCTTACATGATTCTGGTTTGTAAAAGGAAATAAACCATTA-TATTTAT
64 TTTATTTTCTT-ATGAATCTTATATGATTCTAATATGTAAAAGGAAATAAATC-GTAGAATTTGT
* *
4925923 TTTCATGTTT
127 TTTCTTATTT
* * * * * *
4925933 TG-AAAAGGAAAATAAA-CTGTTAGATTTATTTTCCTGTTTTGAAAAAGGAAATAACTTGTTGAA
1 TGTAAAAAG-AAATAAATC-GTTTGATTTATTTTCCTATTTTGTAAAAGGAAATAAATAGTTGAA
* * * * ** * * * *
4925996 TTTATTTCCTTGAT-AATCTTATATAATTTTGAGCTGTAAAATGAAATAAATCGTTGGATTTATT
64 TTTATTTTCTT-ATGAATCTTATATGATTCTAATATGTAAAAGGAAATAAATCGTAGAATTTGTT
*
4926060 TTCCTATTT
128 TTCTTATTT
*
4926069 TATAAAATA-AAATAAAT
1 TGTAAAA-AGAAATAAAT
4926086 TGTTGAATTA
Statistics
Matches: 529, Mismatches: 104, Indels: 88
0.73 0.14 0.12
Matches are distributed among these distances:
117 46 0.09
118 2 0.00
119 3 0.01
120 7 0.01
121 9 0.02
122 10 0.02
123 3 0.01
124 1 0.00
125 2 0.00
126 2 0.00
127 1 0.00
128 3 0.01
129 15 0.03
130 5 0.01
131 6 0.01
132 12 0.02
133 31 0.06
134 17 0.03
135 5 0.01
136 177 0.33
137 167 0.32
138 5 0.01
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (136 bp):
TGTAAAAAGAAATAAATCGTTTGATTTATTTTCCTATTTTGTAAAAGGAAATAAATAGTTGAATT
TATTTTCTTATGAATCTTATATGATTCTAATATGTAAAAGGAAATAAATCGTAGAATTTGTTTTC
TTATTT
Found at i:4925636 original size:78 final size:78
Alignment explanation
Indices: 4925506--4925719 Score: 275
Period size: 78 Copynumber: 2.7 Consensus size: 78
4925496 GATTCTAATA
* * * * * *
4925506 TGTAAAAGGATATTAATCGTAGAATTAATTTTTCTTATTTTGTAAAAAGAAATAAATCGTTTGAT
1 TGTAAAAGGAAATAAATCGTTGAATTTA-TTTTCTTATTTTGTAAAAGGAAATAAATCATTTGAT
*
4925571 TTATTTTCCTATTT
65 TTATTTTCCTAGTT
* *
4925585 TGTAAAAGGAAATAAATCGTTTAATTTATTTTCTTATTTTATAAAAGGAAATAAATCATTTGATT
1 TGTAAAAGGAAATAAATCGTTGAATTTATTTTCTTATTTTGTAAAAGGAAATAAATCATTTGATT
4925650 TATTTTCCTAGTT
66 TATTTTCCTAGTT
* * * * * * *
4925663 TGTAAAAAGAAATAAATTGTTGGACTTATTTTCCTATCTTGTAAAAGGAAGTAAATC
1 TGTAAAAGGAAATAAATCGTTGAATTTATTTTCTTATTTTGTAAAAGGAAATAAATC
4925720 TAAAAGGAAA
Statistics
Matches: 117, Mismatches: 18, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
78 94 0.80
79 23 0.20
ACGTcount: A:0.37, C:0.07, G:0.12, T:0.43
Consensus pattern (78 bp):
TGTAAAAGGAAATAAATCGTTGAATTTATTTTCTTATTTTGTAAAAGGAAATAAATCATTTGATT
TATTTTCCTAGTT
Found at i:4925749 original size:55 final size:55
Alignment explanation
Indices: 4925665--4925773 Score: 148
Period size: 55 Copynumber: 2.0 Consensus size: 55
4925655 TCCTAGTTTG
* * *
4925665 TAAAAAGAAATAAATTGTTGGACTTATTTTCCTA-TCTTGTAAAAGGAAGTAAATC
1 TAAAAAGAAATAAATCGTTAGACTTATTTTCCTAGT-TTGTAAAAGGAAATAAATC
* * *
4925720 TAAAAGGAAATAACTCGTTAGATTTATTTTCCTAGTTTGTAAAAGGAAATAAAT
1 TAAAAAGAAATAAATCGTTAGACTTATTTTCCTAGTTTGTAAAAGGAAATAAAT
4925774 TGTAGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
55 46 0.98
56 1 0.02
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (55 bp):
TAAAAAGAAATAAATCGTTAGACTTATTTTCCTAGTTTGTAAAAGGAAATAAATC
Found at i:4925784 original size:39 final size:39
Alignment explanation
Indices: 4925720--4925868 Score: 174
Period size: 39 Copynumber: 3.8 Consensus size: 39
4925710 GAAGTAAATC
* *
4925720 TAAAAGGAAATAACTCGTTAG-ATTTATTTTCCTAGTTTG
1 TAAAAGAAAATAAATCG-TAGAATTTATTTTCCTAGTTTG
* * * *
4925759 TAAAAGGAAATAAATTGTAGAATTTATTTTCTTATTTTG
1 TAAAAGAAAATAAATCGTAGAATTTATTTTCCTAGTTTG
* *
4925798 TAAAAGAAAATAAATCGTTGGATTTATTTTCCTAGTTTTG
1 TAAAAGAAAATAAATCGTAGAATTTATTTTCCTAG-TTTG
* * *
4925838 TAAAAGAAAACAAATTGTTGAATTTATTTTC
1 TAAAAGAAAATAAATCGTAGAATTTATTTTC
4925869 TTGAGAATCT
Statistics
Matches: 95, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
38 3 0.03
39 60 0.63
40 32 0.34
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.42
Consensus pattern (39 bp):
TAAAAGAAAATAAATCGTAGAATTTATTTTCCTAGTTTG
Found at i:4925785 original size:172 final size:173
Alignment explanation
Indices: 4925548--4925868 Score: 493
Period size: 172 Copynumber: 1.9 Consensus size: 173
4925538 TCTTATTTTG
* * **
4925548 TAAAAAGAAATAAATCGTTTGATTTATTTTCCTATTTTGTAAAAGGAAATAAATCGTTTAATTTA
1 TAAAAAGAAATAAATCGTTAGATTTATTTTCCTAGTTTGTAAAAGGAAATAAATCGTAGAATTTA
* * *
4925613 TTTTCTTATTTTATAAAAGGAAATAAATCATTTGATTTATTTTCCTAG-TTTGTAAAA-AGAAAT
66 TTTTCTTATTTTATAAAAGAAAATAAATCATTGGATTTATTTTCCTAGTTTTGTAAAAGA-AAAC
*
4925676 AAATTGTTGGACTTATTTTCCTATCTTGTAAAAGGAAGTAAATC
130 AAATTGTTGAACTTATTTTCCTATCTTGTAAAAGGAAGTAAATC
* * *
4925720 TAAAAGGAAATAACTCGTTAGATTTATTTTCCTAGTTTGTAAAAGGAAATAAATTGTAGAATTTA
1 TAAAAAGAAATAAATCGTTAGATTTATTTTCCTAGTTTGTAAAAGGAAATAAATCGTAGAATTTA
* *
4925785 TTTTCTTATTTTGTAAAAGAAAATAAATCGTTGGATTTATTTTCCTAGTTTTGTAAAAGAAAACA
66 TTTTCTTATTTTATAAAAGAAAATAAATCATTGGATTTATTTTCCTAGTTTTGTAAAAGAAAACA
*
4925850 AATTGTTGAATTTATTTTC
131 AATTGTTGAACTTATTTTC
4925869 TTGAGAATCT
Statistics
Matches: 133, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
172 102 0.77
173 30 0.23
174 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.42
Consensus pattern (173 bp):
TAAAAAGAAATAAATCGTTAGATTTATTTTCCTAGTTTGTAAAAGGAAATAAATCGTAGAATTTA
TTTTCTTATTTTATAAAAGAAAATAAATCATTGGATTTATTTTCCTAGTTTTGTAAAAGAAAACA
AATTGTTGAACTTATTTTCCTATCTTGTAAAAGGAAGTAAATC
Found at i:4925787 original size:94 final size:94
Alignment explanation
Indices: 4925626--4925813 Score: 277
Period size: 94 Copynumber: 2.0 Consensus size: 94
4925616 TCTTATTTTA
* * *
4925626 TAAAAGGAAATAAATCATTTGATTTATTTTCCTAGTTTGTAAAAAGAAATAAATTGTTGGACTTA
1 TAAAAGGAAATAAATCATTAGATTTATTTTCCTAGTTTGTAAAAAGAAATAAATTGTAGAACTTA
* *
4925691 TTTTCCTATCTTGTAAAAGGAAGTAAATC
66 TTTTCCTATCTTGTAAAAGAAAATAAATC
* * * *
4925720 TAAAAGGAAATAACTCGTTAGATTTATTTTCCTAGTTTGTAAAAGGAAATAAATTGTAGAATTTA
1 TAAAAGGAAATAAATCATTAGATTTATTTTCCTAGTTTGTAAAAAGAAATAAATTGTAGAACTTA
* *
4925785 TTTTCTTATTTTGTAAAAGAAAATAAATC
66 TTTTCCTATCTTGTAAAAGAAAATAAATC
4925814 GTTGGATTTA
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 83 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.39
Consensus pattern (94 bp):
TAAAAGGAAATAAATCATTAGATTTATTTTCCTAGTTTGTAAAAAGAAATAAATTGTAGAACTTA
TTTTCCTATCTTGTAAAAGAAAATAAATC
Found at i:4925825 original size:133 final size:133
Alignment explanation
Indices: 4925587--4925843 Score: 351
Period size: 133 Copynumber: 1.9 Consensus size: 133
4925577 TCCTATTTTG
* * *
4925587 TAAAAGGAAATAAATCGTTTAATTTATTTTCTTATTTTATAAAAGGAAATAAATCATTTGATTTA
1 TAAAAGGAAATAAATCGTTTAATTTATTTTCCTAGTTTATAAAAGGAAATAAAT-ATTAGATTTA
*
4925652 TTTTCCTAGTTTGTAAAAAGAAATAAATTGTTGGACTTATTTTCCTA-TCTTGTAAAAGGAAGTA
65 TTTTCCTAGTTTGTAAAAAGAAATAAATCGTTGGACTTATTTTCCTAGTCTTGTAAAAGGAAGTA
4925716 AATC
130 AATC
* *
4925720 TAAAAGGAAATAACTCG-TTAGATTTATTTTCCTAGTTTGTAAAAGGAAATAAAT-TGTAGAATT
1 TAAAAGGAAATAAATCGTTTA-ATTTATTTTCCTAGTTTATAAAAGGAAATAAATAT-TAG-ATT
* * * *
4925783 TATTTTCTTATTTTGT-AAAAGAAAATAAATCGTTGGATTTATTTTCCTAGTTTTGTAAAAG
63 TATTTTCCTAGTTTGTAAAAAG-AAATAAATCGTTGGACTTATTTTCCTAGTCTTGTAAAAG
4925844 AAAACAAATT
Statistics
Matches: 109, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
131 1 0.01
132 10 0.09
133 88 0.81
134 10 0.09
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.42
Consensus pattern (133 bp):
TAAAAGGAAATAAATCGTTTAATTTATTTTCCTAGTTTATAAAAGGAAATAAATATTAGATTTAT
TTTCCTAGTTTGTAAAAAGAAATAAATCGTTGGACTTATTTTCCTAGTCTTGTAAAAGGAAGTAA
ATC
Found at i:4925863 original size:40 final size:40
Alignment explanation
Indices: 4925741--4925868 Score: 188
Period size: 39 Copynumber: 3.2 Consensus size: 40
4925731 AACTCGTTAG
* *
4925741 ATTTATTTTCCTAG-TTTGTAAAAGGAAATAAATTGTAGA
1 ATTTATTTTCCTAGTTTTGTAAAAGAAAATAAATTGTTGA
* * *
4925780 ATTTATTTTCTTA-TTTTGTAAAAGAAAATAAATCGTTGG
1 ATTTATTTTCCTAGTTTTGTAAAAGAAAATAAATTGTTGA
*
4925819 ATTTATTTTCCTAGTTTTGTAAAAGAAAACAAATTGTTGA
1 ATTTATTTTCCTAGTTTTGTAAAAGAAAATAAATTGTTGA
4925859 ATTTATTTTC
1 ATTTATTTTC
4925869 TTGAGAATCT
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 45 0.58
40 33 0.42
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (40 bp):
ATTTATTTTCCTAGTTTTGTAAAAGAAAATAAATTGTTGA
Found at i:4925985 original size:39 final size:38
Alignment explanation
Indices: 4925892--4926002 Score: 127
Period size: 39 Copynumber: 2.8 Consensus size: 38
4925882 ATGATTCTGG
** *
4925892 TTTGTAAAAGGAAATAAACCATTATATTTATTTTCATGT
1 TTTG-AAAAGGAAATAAACTGTTAGATTTATTTTCATGT
*
4925931 TTTGAAAAGGAAAATAAACTGTTAGATTTATTTTCCTGT
1 TTTGAAAAGG-AAATAAACTGTTAGATTTATTTTCATGT
4925970 TTTGAAAAAGGAAAT-AACTTGTT-GAATTTATTT
1 TTTG-AAAAGGAAATAAAC-TGTTAG-ATTTATTT
4926003 CCTTGATAAT
Statistics
Matches: 64, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
38 10 0.16
39 48 0.75
40 6 0.09
ACGTcount: A:0.38, C:0.06, G:0.14, T:0.42
Consensus pattern (38 bp):
TTTGAAAAGGAAATAAACTGTTAGATTTATTTTCATGT
Found at i:4927354 original size:261 final size:262
Alignment explanation
Indices: 4926752--4927538 Score: 1405
Period size: 261 Copynumber: 3.0 Consensus size: 262
4926742 ATTTGATCCC
* *
4926752 ACAACGTTTTATTTTGATTCAAAAGTCACCCCCGTTGGATGAAAACCTTTAGTCAACTGACGGTC
1 ACAACGTTTTATTTTGATTCAAAAGTCACCCTCGTTGGATGGAAACCTTTAGTCAACTGACGGTC
*
4926817 AACGCCTCCAGCTGACTAAGCAAGCACATGTGGATACAAATAATAACGTGGCGTGTCCACGTCAC
66 AACGCCTCCAGCTGACTAAGCAAGCACATGTGGACACAAATAATAACGTGGCGTGTCCACGTCAC
* *
4926882 TAAAGTATGCTGACATGGAATTTACACGTCAGATTTTATTTTTTATTAAAAAATTAATATTTTTA
131 TAAAGTATGCTGACATGGAATTTACACGCCATATTTTATTTTTTATTAAAAAATTAATATTTTTA
* *
4926947 TTAGAATTTTTTTACCAATTAGGTCACTCTCCTATTAGTGTGGATTTAGAGGAATGAAGAAAAAC
196 TTAGAATTTTTTTACCAATAAGGTCACTCTCCTATTAGTGCGGATTTAGAGGAATGAAGAAAAAC
4927012 CT
261 CT
4927014 ACAACGTTTTATTTTGATTCAAAAGTCACCCTCGTTGGATGGAAACCTTTAGTCAACTGACGGTC
1 ACAACGTTTTATTTTGATTCAAAAGTCACCCTCGTTGGATGGAAACCTTTAGTCAACTGACGGTC
* * * *
4927079 AACGCCTTCAGCTGACTAAGCAAACACATATTGACACAAATAATAACGTGGCGTGTCCACGTCAC
66 AACGCCTCCAGCTGACTAAGCAAGCACATGTGGACACAAATAATAACGTGGCGTGTCCACGTCAC
*
4927144 TAAAGTATGCTGACATGGAATTTACATGCCATATTTTATTTTTTATTAAAAAATTAATATTTTTA
131 TAAAGTATGCTGACATGGAATTTACACGCCATATTTTATTTTTTATTAAAAAATTAATATTTTTA
*
4927209 TTAGAA-TTTTTTACCAATGAGGTCACTCTCCTATTAGTGCGGATTTAGAGGAATGAAGAAAAAC
196 TTAGAATTTTTTTACCAATAAGGTCACTCTCCTATTAGTGCGGATTTAGAGGAATGAAGAAAAAC
4927273 CT
261 CT
*
4927275 ACAACATTTTATTTTGATTCAAAAGTCACCCTCGTTGGATGGAAACCTTTAGTCAACTGACGGTC
1 ACAACGTTTTATTTTGATTCAAAAGTCACCCTCGTTGGATGGAAACCTTTAGTCAACTGACGGTC
*
4927340 AACGCCTCCAGCTGACTAAGCAAGCACATGTGGACACAAATAATAACGTGGAGTGTCCACGTCAC
66 AACGCCTCCAGCTGACTAAGCAAGCACATGTGGACACAAATAATAACGTGGCGTGTCCACGTCAC
4927405 TAAAGTATGCTGACATGGAATTTACACGCCATATTTTATTTTTTATTAAAAAATTAATATTTTTA
131 TAAAGTATGCTGACATGGAATTTACACGCCATATTTTATTTTTTATTAAAAAATTAATATTTTTA
* *
4927470 TTAGAATTTTTTTACCAATAAAGTCACTCTCCTATTAGTGCGGATTTAGAGGAGTGAAGAAAAAA
196 TTAGAATTTTTTTACCAATAAGGTCACTCTCCTATTAGTGCGGATTTAGAGGAATGAAG-AAAAA
4927535 CCT
260 CCT
4927538 A
1 A
4927539 TTTTGTGTGT
Statistics
Matches: 501, Mismatches: 22, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
261 252 0.50
262 240 0.48
263 9 0.02
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.32
Consensus pattern (262 bp):
ACAACGTTTTATTTTGATTCAAAAGTCACCCTCGTTGGATGGAAACCTTTAGTCAACTGACGGTC
AACGCCTCCAGCTGACTAAGCAAGCACATGTGGACACAAATAATAACGTGGCGTGTCCACGTCAC
TAAAGTATGCTGACATGGAATTTACACGCCATATTTTATTTTTTATTAAAAAATTAATATTTTTA
TTAGAATTTTTTTACCAATAAGGTCACTCTCCTATTAGTGCGGATTTAGAGGAATGAAGAAAAAC
CT
Found at i:4931263 original size:159 final size:159
Alignment explanation
Indices: 4930974--4931295 Score: 484
Period size: 159 Copynumber: 2.0 Consensus size: 159
4930964 GTGTGCGATA
** * *
4930974 ATTGTGGAGGTTTATTATCCCAAGTTTGTTCCTATGATGTAAATAGGGATCAAATTGGTATAGGC
1 ATTGTGGAGGTTTATTATCCCAAGTTCATTCCTATGATGTAAACAAGGATCAAATTGGTATAGGC
* *
4931039 TAAGCAAAACTTTTAATGACCATTGTGTGCTTCGATGAGTCGAGCAAAATAAATCACCTATGTGA
66 TAAACAAAACTTTTAATGACCATTGTGTGCTTCGATAAGTCGAGCAAAATAAATCACCTATGTGA
* *
4931104 GAGTGAAGTGGGGCCGCTTCAAGGAGACT
131 GAGTGAAGTAGGGCCACTTCAAGGAGACT
* * * *
4931133 ATTGTGTAGGTTTATTTTCCCAAGTTCATTCCTATGATGTAAACAATGATCAAATTGGTATAGTC
1 ATTGTGGAGGTTTATTATCCCAAGTTCATTCCTATGATGTAAACAAGGATCAAATTGGTATAGGC
* * * *
4931198 TAAACAAAGA-TTTTAATGACCGTTGTGTGTTTCGATAAGTCGAGCAAGATAAGTCACCTATGTG
66 TAAACAAA-ACTTTTAATGACCATTGTGTGCTTCGATAAGTCGAGCAAAATAAATCACCTATGTG
4931262 AGAGTGAAGTAGGGCCACTTCAAGGAGACT
130 AGAGTGAAGTAGGGCCACTTCAAGGAGACT
4931292 ATTG
1 ATTG
4931296 GGCATATTTC
Statistics
Matches: 146, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
159 145 0.99
160 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (159 bp):
ATTGTGGAGGTTTATTATCCCAAGTTCATTCCTATGATGTAAACAAGGATCAAATTGGTATAGGC
TAAACAAAACTTTTAATGACCATTGTGTGCTTCGATAAGTCGAGCAAAATAAATCACCTATGTGA
GAGTGAAGTAGGGCCACTTCAAGGAGACT
Found at i:4934472 original size:3 final size:3
Alignment explanation
Indices: 4934464--4934570 Score: 150
Period size: 3 Copynumber: 36.7 Consensus size: 3
4934454 TTTTTATCCA
4934464 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* *
4934509 TAT TAT TAT TAT TAT TA- TAT T-T TAA TAT TAT TAT TAA TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
4934554 TAT TAT TTT TAT TAT TA
1 TAT TAT TAT TAT TAT TA
4934571 AATATATTAA
Statistics
Matches: 94, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
2 8 0.09
3 83 0.88
4 3 0.03
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:4935367 original size:13 final size:13
Alignment explanation
Indices: 4935349--4935377 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
4935339 ACCACCGTTA
4935349 CGGTGGCCGGCGG
1 CGGTGGCCGGCGG
4935362 CGGTGGCCGGCGG
1 CGGTGGCCGGCGG
4935375 CGG
1 CGG
4935378 AGTACGGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.31, G:0.62, T:0.07
Consensus pattern (13 bp):
CGGTGGCCGGCGG
Done.