Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10629029
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 35 of 51
Found at i:7119565 original size:21 final size:23
Alignment explanation
Indices: 7119541--7119586 Score: 60
Period size: 21 Copynumber: 2.0 Consensus size: 23
7119531 TCTAGCCTTT
7119541 AATAATAATTC-T-TATTAAATA
1 AATAATAATTCATCTATTAAATA
*
7119562 AATAATATTTCATTCTATTAAATA
1 AATAATAATTCA-TCTATTAAATA
7119586 A
1 A
7119587 TAACACCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 10 0.48
23 1 0.05
24 10 0.48
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (23 bp):
AATAATAATTCATCTATTAAATA
Found at i:7123760 original size:8 final size:8
Alignment explanation
Indices: 7123747--7123772 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7123737 ATCTTATGGT
7123747 TTTTGAAA
1 TTTTGAAA
7123755 TTTTGAAA
1 TTTTGAAA
7123763 TTTTGAAA
1 TTTTGAAA
7123771 TT
1 TT
7123773 GTTCCTTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.54
Consensus pattern (8 bp):
TTTTGAAA
Found at i:7124113 original size:19 final size:18
Alignment explanation
Indices: 7124091--7124140 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
7124081 GGAGAGAGAG
7124091 AAATAAAAATAAGGAAATA
1 AAATAAAAATAAGG-AATA
7124110 AAAT-AAAATAAAGGAATA
1 AAATAAAAAT-AAGGAATA
*
7124128 AAGTAAAACATAA
1 AAATAAAA-ATAA
7124141 TATTTTCCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 12 0.44
19 13 0.48
20 2 0.07
ACGTcount: A:0.72, C:0.02, G:0.10, T:0.16
Consensus pattern (18 bp):
AAATAAAAATAAGGAATA
Found at i:7124257 original size:6 final size:6
Alignment explanation
Indices: 7124248--7124298 Score: 84
Period size: 6 Copynumber: 8.5 Consensus size: 6
7124238 TTATCCAGGA
* *
7124248 AAAAAT AAAAAT AAAGAT AATAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
7124296 AAA
1 AAA
7124299 TTCATTATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:7132830 original size:17 final size:17
Alignment explanation
Indices: 7132810--7132870 Score: 65
Period size: 17 Copynumber: 3.8 Consensus size: 17
7132800 TTAATGATTA
7132810 AAATATAATAATTTATT
1 AAATATAATAATTTATT
*
7132827 AAATATACTAA-TTATT
1 AAATATAATAATTTATT
* *
7132843 --TTATAATAATTTAAT
1 AAATATAATAATTTATT
*
7132858 AAATAAAATAATT
1 AAATATAATAATT
7132871 ATTTTATAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
14 7 0.20
15 4 0.11
16 5 0.14
17 19 0.54
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
AAATATAATAATTTATT
Found at i:7132843 original size:20 final size:18
Alignment explanation
Indices: 7132806--7132839 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7132796 TAATTTAATG
7132806 ATTAAAATATAATAATTT
1 ATTAAAATATAATAATTT
*
7132824 ATT-AAATATACTAATT
1 ATTAAAATATAATAATT
7132840 ATTTTATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTAAAATATAATAATTT
Found at i:7132882 original size:28 final size:31
Alignment explanation
Indices: 7132813--7132880 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
7132803 ATGATTAAAA
* * *
7132813 TATAATAATTTATTAAATATACTAATTATTT
1 TATAATAATTTAATAAATAAAATAATTATTT
7132844 TATAATAATTTAATAAATAAAATAATTATTT
1 TATAATAATTTAATAAATAAAATAATTATTT
7132875 TATAAT
1 TATAAT
7132881 TTTTAACAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (31 bp):
TATAATAATTTAATAAATAAAATAATTATTT
Found at i:7142233 original size:17 final size:17
Alignment explanation
Indices: 7142182--7142246 Score: 55
Period size: 17 Copynumber: 3.7 Consensus size: 17
7142172 TGTTACGGAT
7142182 TTTATTAATTATTAATGTTA
1 TTTA-TAATT-TTAAT-TTA
*
7142202 TTT-CAATTCTTAATTCT-
1 TTTATAATT-TTAATT-TA
7142219 TTTATAATTTTAATTTA
1 TTTATAATTTTAATTTA
7142236 TTTAT-ATTTTA
1 TTTATAATTTTA
7142247 TTAAAAATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
16 7 0.18
17 15 0.38
18 14 0.36
20 3 0.08
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.63
Consensus pattern (17 bp):
TTTATAATTTTAATTTA
Found at i:7144007 original size:38 final size:38
Alignment explanation
Indices: 7143951--7144046 Score: 147
Period size: 38 Copynumber: 2.5 Consensus size: 38
7143941 TATAAGACAT
* *
7143951 ATGATAGGTCCTACGGGACACAGATTACATCCTTCAGG
1 ATGATAGGTCCTTCGGGACACAGATGACATCCTTCAGG
* * *
7143989 ATGACAGGTCCTTCGGGACACATATGACATCCTTCGGG
1 ATGATAGGTCCTTCGGGACACAGATGACATCCTTCAGG
7144027 ATGATAGGTCCTTCGGGACA
1 ATGATAGGTCCTTCGGGACA
7144047 TTTGTACGAG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (38 bp):
ATGATAGGTCCTTCGGGACACAGATGACATCCTTCAGG
Found at i:7144236 original size:20 final size:20
Alignment explanation
Indices: 7144200--7144297 Score: 77
Period size: 20 Copynumber: 5.2 Consensus size: 20
7144190 TGACATGATT
*
7144200 TATATATATGTCATATTGAAA
1 TATATACATG-CATATTGAAA
7144221 TATATACATGCATATTGAAA
1 TATATACATGCATATTGAAA
*
7144241 TGT-T--ATG---ATT-AAA
1 TATATACATGCATATTGAAA
* *
7144254 TGGTA-AGAATGCATATTGAAA
1 T-ATATA-CATGCATATTGAAA
7144275 TATATACATGCATATTGAAA
1 TATATACATGCATATTGAAA
7144295 TAT
1 TAT
7144298 TATGATTAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 21
0.72 0.05 0.24
Matches are distributed among these distances:
13 4 0.06
14 5 0.08
17 6 0.10
19 1 0.02
20 33 0.52
21 14 0.22
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (20 bp):
TATATACATGCATATTGAAA
Found at i:7144270 original size:54 final size:54
Alignment explanation
Indices: 7144211--7144324 Score: 219
Period size: 54 Copynumber: 2.1 Consensus size: 54
7144201 ATATATATGT
*
7144211 CATATTGAAATATATACATGCATATTGAAATGTTATGATTAAATGGTAAGAATG
1 CATATTGAAATATATACATGCATATTGAAATATTATGATTAAATGGTAAGAATG
7144265 CATATTGAAATATATACATGCATATTGAAATATTATGATTAAATGGTAAGAATG
1 CATATTGAAATATATACATGCATATTGAAATATTATGATTAAATGGTAAGAATG
7144319 CATATT
1 CATATT
7144325 CATGAAATCT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.43, C:0.06, G:0.15, T:0.36
Consensus pattern (54 bp):
CATATTGAAATATATACATGCATATTGAAATATTATGATTAAATGGTAAGAATG
Found at i:7146094 original size:2 final size:2
Alignment explanation
Indices: 7146087--7146151 Score: 130
Period size: 2 Copynumber: 32.5 Consensus size: 2
7146077 TATCATTGGA
7146087 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7146129 AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
7146152 ATTTGATTGA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7146712 original size:2 final size:2
Alignment explanation
Indices: 7146705--7146743 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7146695 ATTTGAATCC
7146705 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7146744 GATTAAGGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7150493 original size:20 final size:20
Alignment explanation
Indices: 7150468--7150554 Score: 73
Period size: 20 Copynumber: 4.7 Consensus size: 20
7150458 ATTTATATGT
7150468 CATATTGAAATATATACATG
1 CATATTGAAATATATACATG
*
7150488 CATATTGAAATGT-T--ATG
1 CATATTGAAATATATACATG
* *
7150505 ---ATT-AAATGGTA-AGAATG
1 CATATTGAAAT-ATATA-CATG
7150522 CATATTGAAATATATACATG
1 CATATTGAAATATATACATG
7150542 CATATTGAAATAT
1 CATATTGAAATAT
7150555 TATGATTAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 20
0.70 0.04 0.26
Matches are distributed among these distances:
13 4 0.07
14 5 0.09
17 6 0.11
19 1 0.02
20 33 0.61
21 5 0.09
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.36
Consensus pattern (20 bp):
CATATTGAAATATATACATG
Found at i:7150531 original size:54 final size:54
Alignment explanation
Indices: 7150468--7150581 Score: 219
Period size: 54 Copynumber: 2.1 Consensus size: 54
7150458 ATTTATATGT
*
7150468 CATATTGAAATATATACATGCATATTGAAATGTTATGATTAAATGGTAAGAATG
1 CATATTGAAATATATACATGCATATTGAAATATTATGATTAAATGGTAAGAATG
7150522 CATATTGAAATATATACATGCATATTGAAATATTATGATTAAATGGTAAGAATG
1 CATATTGAAATATATACATGCATATTGAAATATTATGATTAAATGGTAAGAATG
7150576 CATATT
1 CATATT
7150582 CATGAAATCT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.43, C:0.06, G:0.15, T:0.36
Consensus pattern (54 bp):
CATATTGAAATATATACATGCATATTGAAATATTATGATTAAATGGTAAGAATG
Found at i:7153363 original size:14 final size:14
Alignment explanation
Indices: 7153344--7153371 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7153334 ATTAACATTT
7153344 TAAATTTTTTTAAA
1 TAAATTTTTTTAAA
7153358 TAAATTTTTTTAAA
1 TAAATTTTTTTAAA
7153372 CAATATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TAAATTTTTTTAAA
Found at i:7159126 original size:75 final size:75
Alignment explanation
Indices: 7158996--7159203 Score: 258
Period size: 74 Copynumber: 2.8 Consensus size: 75
7158986 CAAAGCCAAA
* ** * **
7158996 AATTCCAGATTGCTAAGAGGGAACCGATTCCCCCCCATAGGAGGAACCGATTCCCCCCTGAATGG
1 AATTCCAGAATGCTCGGAGGGAACCGATT--CCCCCATAGGAGGAACCGATTCCCCCCTAAACAG
7159061 TTTGGCTCCGAG
64 TTTGGCTCCGAG
*
7159073 ATTTCCAGAATGCTCGGAGGGAACCGATTCCCCCATAGGAGGAACCGATT-CCCCCTAAACAGTT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTT
* *
7159137 TTGTTCCGAG
66 TGGCTCCGAG
* * * *
7159147 AATTCCAGTATGCTCGGAGGGAACCGATCCCCGCCA-AGGGGGTACCGATTCCCCCCT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCC-CCATAGGAGGAACCGATTCCCCCCT
7159204 TGTACAACGG
Statistics
Matches: 115, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
74 60 0.52
75 30 0.26
77 25 0.22
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.21
Consensus pattern (75 bp):
AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTT
TGGCTCCGAG
Found at i:7165010 original size:20 final size:21
Alignment explanation
Indices: 7164973--7165033 Score: 52
Period size: 23 Copynumber: 2.9 Consensus size: 21
7164963 TTTTGGTGCA
* * *
7164973 GAGGGAATCGA-TCCCCCCAT
1 GAGGGAACCGATTTCCCCTAT
*
7164993 GAGGGAACCGATTTCCCCTTT
1 GAGGGAACCGATTTCCCCTAT
*
7165014 GAATGGGAACCGATTCCCCC
1 G-A-GGGAACCGATTTCCCC
7165034 CACAGGGGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
20 10 0.30
21 7 0.21
22 1 0.03
23 15 0.45
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.20
Consensus pattern (21 bp):
GAGGGAACCGATTTCCCCTAT
Found at i:7167017 original size:9 final size:8
Alignment explanation
Indices: 7166995--7167045 Score: 52
Period size: 9 Copynumber: 6.2 Consensus size: 8
7166985 TGTTTCAACA
7166995 TTTTGGAT
1 TTTTGGAT
7167003 ATTTTGGAT
1 -TTTTGGAT
7167012 TGTTT-GAT
1 T-TTTGGAT
7167020 TTTGTGGAT
1 TTT-TGGAT
*
7167029 TGTTGGA-
1 TTTTGGAT
7167036 TTTTGGAT
1 TTTTGGAT
7167044 TT
1 TT
7167046 ATGAATGGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
7 8 0.22
8 12 0.33
9 16 0.44
ACGTcount: A:0.14, C:0.00, G:0.27, T:0.59
Consensus pattern (8 bp):
TTTTGGAT
Found at i:7167029 original size:17 final size:17
Alignment explanation
Indices: 7166997--7167040 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
7166987 TTTCAACATT
7166997 TTGGATATTT-TGGATTG
1 TTGGAT-TTTGTGGATTG
*
7167014 TTTGATTTTGTGGATTG
1 TTGGATTTTGTGGATTG
7167031 TTGGATTTTG
1 TTGGATTTTG
7167041 GATTTATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 3 0.12
17 21 0.88
ACGTcount: A:0.14, C:0.00, G:0.30, T:0.57
Consensus pattern (17 bp):
TTGGATTTTGTGGATTG
Found at i:7167811 original size:74 final size:73
Alignment explanation
Indices: 7167645--7167850 Score: 252
Period size: 74 Copynumber: 2.7 Consensus size: 73
7167635 CAAAGCCAAA
* * **
7167645 AATTCCAGATTGCTCAGAGGGAACCGATTCCCCCCCATAGGAGGAACCGATTCCCCCCTGAATGG
1 AATTCCAGA-TGCTCGGAGGGAACCGATT--CCCCCATAGGAGGAACCGATT-CCCCCTAAACAG
7167710 TTTGGCTCCGAG
62 TTTGGCTCCGAG
*
7167722 ATTTCCAGAATGCTCGGAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTTT
1 AATTCCAG-ATGCTCGGAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTTT
* *
7167787 TGTTCCGAG
65 GGCTCCGAG
* * *
7167796 AATTCCAGTATGCTCGGAGGGAACCGATCCCCGCCA-AGGGGGTACCGATTCCCCC
1 AATTCCAG-ATGCTCGGAGGGAACCGATTCCC-CCATAGGAGGAACCGATTCCCCC
7167851 CTTGTACAAC
Statistics
Matches: 115, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
74 65 0.57
75 24 0.21
77 25 0.22
78 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (73 bp):
AATTCCAGATGCTCGGAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTTTG
GCTCCGAG
Found at i:7175982 original size:24 final size:24
Alignment explanation
Indices: 7175953--7176024 Score: 87
Period size: 24 Copynumber: 3.0 Consensus size: 24
7175943 TATATACATA
7175953 AATAAAATTGTTTATTGGCTTAAT
1 AATAAAATTGTTTATTGGCTTAAT
**
7175977 AATAAAATTGTTGTA-T--AATAAT
1 AATAAAATTGTT-TATTGGCTTAAT
7175999 AAATAAAATTGTTTATTGGCTTAAT
1 -AATAAAATTGTTTATTGGCTTAAT
7176024 A
1 A
7176025 CTCATTTACT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
22 6 0.15
23 13 0.33
24 14 0.36
25 6 0.15
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (24 bp):
AATAAAATTGTTTATTGGCTTAAT
Found at i:7176339 original size:22 final size:22
Alignment explanation
Indices: 7176300--7176361 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
7176290 TATGATTATA
**
7176300 TATTATATATAAGCTATATAGTT
1 TATTA-ATATAAATTATATAGTT
7176323 TATTAATATAAATTATATAGTT
1 TATTAATATAAATTATATAGTT
7176345 TA-T-ATATAAATTATATA
1 TATTAATATAAATTATATA
7176362 TGAATTATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 14 0.38
21 1 0.03
22 17 0.46
23 5 0.14
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (22 bp):
TATTAATATAAATTATATAGTT
Found at i:7176352 original size:11 final size:11
Alignment explanation
Indices: 7176296--7176640 Score: 68
Period size: 11 Copynumber: 30.1 Consensus size: 11
7176286 TTTATATGAT
*
7176296 TATATATTATA
1 TATAAATTATA
**
7176307 TATAAGCTATA
1 TATAAATTATA
**
7176318 TAGTTTATTA-A
1 TA-TAAATTATA
7176329 TATAAATTATA
1 TATAAATTATA
7176340 TAGT---TTATA
1 TA-TAAATTATA
7176349 TATAAATTATA
1 TATAAATTATA
*
7176360 TATGAATTATA
1 TATAAATTATA
*
7176371 TTTAAA-TATA
1 TATAAATTATA
* *
7176381 TACAACTTATA
1 TATAAATTATA
* *
7176392 TTTATATATTATG
1 --TATAAATTATA
7176405 TAT-AATTATA
1 TATAAATTATA
* *
7176415 AATTATATATACTA
1 TA-TAAAT-TA-TA
*** *
7176429 TATTGTTTAAA
1 TATAAATTATA
7176440 TATAAA--ATA
1 TATAAATTATA
*
7176449 TA-AAAGTATA
1 TATAAATTATA
*
7176459 TATATATATATA
1 TATAAAT-TATA
7176471 TATAAGATTAAAGTA
1 TATAA-ATT--A-TA
7176486 TATAAGTATATATA
1 TATAA--AT-TATA
* *
7176500 TAAAAACTATA
1 TATAAATTATA
* *
7176511 AAGTAAAAGTATA
1 TA-T-AAATTATA
* *
7176524 TATATATATAAA
1 TATAAAT-TATA
*
7176536 GTATAAAGCATATA
1 -TATAAA--TTATA
*
7176550 TATATAGTTA-A
1 TATA-AATTATA
7176561 TATAAACTATATA
1 TATAAA-T-TATA
7176574 TATAAA-TATA
1 TATAAATTATA
**
7176584 TAGTTTATTA-A
1 TA-TAAATTATA
7176595 TATAAATTATA
1 TATAAATTATA
* *
7176606 CATGAATTATA
1 TATAAATTATA
*
7176617 TTTAAA-TATA
1 TATAAATTATA
7176627 TATACAACTTATA
1 TATA-AA-TTATA
7176640 T
1 T
7176641 TTATATATTA
Statistics
Matches: 234, Mismatches: 61, Indels: 76
0.63 0.16 0.20
Matches are distributed among these distances:
8 4 0.02
9 11 0.05
10 42 0.18
11 82 0.35
12 28 0.12
13 42 0.18
14 14 0.06
15 8 0.03
16 2 0.01
17 1 0.00
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (11 bp):
TATAAATTATA
Found at i:7176360 original size:29 final size:29
Alignment explanation
Indices: 7176328--7176503 Score: 78
Period size: 29 Copynumber: 5.9 Consensus size: 29
7176318 TAGTTTATTA
7176328 ATATAAATTATATAGTTTATATATAAATT
1 ATATAAATTATATAGTTTATATATAAATT
*
7176357 ATATATGAATTATAT--TTAAATATATACAACTT
1 ATATA--AATTATATAGTT-TATATATA-AA-TT
*
7176389 ATAT---TTATATATTATGTATAATTATAAATT
1 ATATAAATTATATAGT-T-TAT-A-TATAAATT
* * * * *
7176419 ATATATACTATATTGTTTAAATATAAAAT
1 ATATAAATTATATAGTTTATATATAAATT
* * * *
7176448 ATA-AAAGTATATA-TATATATATATATA
1 ATATAAATTATATAGTTTATATATAAATT
* * *
7176475 AGATTAAAGTATATAAGTATATATATAAA
1 ATA-TAAATTATAT-AGTTTATATATAAA
7176504 AACTATAAAG
Statistics
Matches: 112, Mismatches: 18, Indels: 32
0.69 0.11 0.20
Matches are distributed among these distances:
27 17 0.15
28 7 0.06
29 27 0.24
30 18 0.16
31 26 0.23
32 11 0.10
33 6 0.05
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (29 bp):
ATATAAATTATATAGTTTATATATAAATT
Found at i:7176369 original size:22 final size:22
Alignment explanation
Indices: 7176301--7176424 Score: 75
Period size: 20 Copynumber: 5.9 Consensus size: 22
7176291 ATGATTATAT
** **
7176301 ATTATATATAAGCTATATAGTTT
1 ATTATATATAAATTATATA-TGA
7176324 ATTA-ATATAAATTATATA-G-
1 ATTATATATAAATTATATATGA
*
7176343 TTTATATATAAATTATATATGA
1 ATTATATATAAATTATATATGA
* *
7176365 ATTATATTTAAA-TATATA-CA
1 ATTATATATAAATTATATATGA
* * *
7176385 ACTTATATTTATA-TAT-TATGT
1 A-TTATATATAAATTATATATGA
*
7176406 ATAAT-TATAAATTATATAT
1 ATTATATATAAATTATATAT
7176425 ACTATATTGT
Statistics
Matches: 81, Mismatches: 13, Indels: 16
0.74 0.12 0.15
Matches are distributed among these distances:
19 7 0.09
20 24 0.30
21 24 0.30
22 22 0.27
23 4 0.05
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.48
Consensus pattern (22 bp):
ATTATATATAAATTATATATGA
Found at i:7176382 original size:21 final size:22
Alignment explanation
Indices: 7176344--7176404 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
7176334 ATTATATAGT
*
7176344 TTATATATAAATTATATATGAA-
1 TTATATTTAAA-TATATATGAAC
*
7176366 TTATATTTAAATATATA-CAAC
1 TTATATTTAAATATATATGAAC
*
7176387 TTATATTTATATAT-TATG
1 TTATATTTAAATATATATG
7176405 TATAATTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
20 4 0.12
21 19 0.58
22 10 0.30
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.49
Consensus pattern (22 bp):
TTATATTTAAATATATATGAAC
Found at i:7176661 original size:23 final size:24
Alignment explanation
Indices: 7176595--7176690 Score: 63
Period size: 23 Copynumber: 4.0 Consensus size: 24
7176585 AGTTTATTAA
* *
7176595 TATAAATTATACATGAATTATATT
1 TATATATTATACATAAATTATATT
* *
7176619 TAAATATATATAC--AACTTATATT
1 TATATAT-TATACATAAATTATATT
*
7176642 TATATATTATGCAT-AATTATAAATT
1 TATATATTATACATAAATTAT--ATT
* **
7176667 GTATATACTATGTATAAATTATAT
1 -TATATATTATACATAAATTATAT
7176691 AGTTTAAATA
Statistics
Matches: 56, Mismatches: 9, Indels: 13
0.72 0.12 0.17
Matches are distributed among these distances:
22 4 0.07
23 19 0.34
24 5 0.09
25 10 0.18
26 12 0.21
27 6 0.11
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (24 bp):
TATATATTATACATAAATTATATT
Found at i:7176721 original size:2 final size:2
Alignment explanation
Indices: 7176714--7176770 Score: 50
Period size: 2 Copynumber: 30.0 Consensus size: 2
7176704 TGTATAAAAG
* * *
7176714 TA TA TA TA TA TA TA AA TA CA TA TA TA -A TA -A TA TA AA GTA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
7176755 -A T- TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
7176771 AAGAATAATT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
1 4 0.09
2 39 0.89
3 1 0.02
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (2 bp):
TA
Found at i:7176822 original size:248 final size:244
Alignment explanation
Indices: 7176328--7176825 Score: 569
Period size: 248 Copynumber: 2.0 Consensus size: 244
7176318 TAGTTTATTA
*
7176328 ATATAAATTATATAGTTTATATATAAATTATATATGAATTATATTTAAATATATACAACTTATAT
1 ATATAAATTATATAGTTTATATATAAATTATACATGAATTATATTTAAATATATACAACTTATAT
* *
7176393 TTATATATTATGTATAATTATAAATTATATATACTATATTGTTTAAATATAAAATATAAAAGTAT
66 TTATATATTATGCATAATTATAAATTATATATAATATATTGTTTAAATATAAAATATAAAAGTAT
*
7176458 ATATATATATATATATAAGATTAAAGTATATAAGTATATATATAAAAACTATAAAGTAAAAGTAT
131 ATATATATATATATATAAGATTAAAATATATAAGTATATATATAAAAACTATAAAGTAAAAGTAT
** *
7176523 ATATATATATAAAGTATAAAGCATATATATATAGTTAATATAAACTATAT
196 ATATATATATAAAGTATAAAG-ATATATATATAAATAACATAAACTATAT
7176573 ATATAAA-TATATAGTTTATTAATATAAATTATACATGAATTATATTTAAATATATATACAACTT
1 ATATAAATTATATAGTTTA-T-ATATAAATTATACATGAATTATATTT-AA-ATATATACAACTT
7176637 ATATTTATATATTATGCATAATTATAAATTGTATATACTATGTATAAATTATATAGTTTAAATAT
62 ATATTTATATATTATGCATAATTATAAA-T-TATATA-TA---AT--A-TAT-T-GTTTAAATAT
** * * *
7176702 AATGTATAAAAGTATATATATATATA-A-ATACATATATAATAATATA-AAGTATA-AT-TATAT
116 AAAATATAAAAGTATATATATATATATATATA-AGAT-TAA-AATATATAAGTATATATATAAAA
* *
7176762 A-TATATA-T-AAAG-A-ATA-AT-TATAAAG-ACTAAAG-TATATA-AGTAAATAACATAAAGT
178 ACTATAAAGTAAAAGTATATATATATATAAAGTA-TAAAGATATATATA-TAAATAACATAAACT
7176817 ATAT
241 ATAT
7176821 ATATA
1 ATATA
7176826 TATAAACTAA
Statistics
Matches: 219, Mismatches: 14, Indels: 37
0.81 0.05 0.14
Matches are distributed among these distances:
244 11 0.05
245 8 0.04
246 25 0.11
247 3 0.01
248 66 0.30
249 2 0.01
250 18 0.08
251 4 0.02
252 3 0.01
253 1 0.00
254 5 0.02
255 1 0.00
256 6 0.03
257 10 0.05
258 7 0.03
259 44 0.20
260 5 0.02
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (244 bp):
ATATAAATTATATAGTTTATATATAAATTATACATGAATTATATTTAAATATATACAACTTATAT
TTATATATTATGCATAATTATAAATTATATATAATATATTGTTTAAATATAAAATATAAAAGTAT
ATATATATATATATATAAGATTAAAATATATAAGTATATATATAAAAACTATAAAGTAAAAGTAT
ATATATATATAAAGTATAAAGATATATATATAAATAACATAAACTATAT
Found at i:7176823 original size:2 final size:2
Alignment explanation
Indices: 7176816--7177235 Score: 122
Period size: 2 Copynumber: 212.0 Consensus size: 2
7176806 TAACATAAAG
* * * *
7176816 TA TA TA TA TA TA TA AA CTA AA GTA TA TA TG TA AA CTA TA TA TA
1 TA TA TA TA TA TA TA TA -TA TA -TA TA TA TA TA TA -TA TA TA TA
* * * *
7176859 TA TA TA TA TA TA TA TA AA GT- TT TA GTA TA AA GTA TA TA CA TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA -TA TA TA TA TA
* *
7176901 TA TA -A TA TA TA TA GTA TA T- TA TA TA AA TA TA AA GTA TA -A T-
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * * * *
7176941 TA TA AA GA CTA AA GTA TA TA -A GCA TA TA -A TA TA AA TA TA TA
1 TA TA TA TA -TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
* * *
7176982 -A GTA TA TA -A TA TA -A AA TA TA -A AA GTA TA TA CA TA TA -A TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
*
7177021 TA TA TA TA TA TA -A TA TA AA GTA TA TA -A GTA TA TA -A TA TA -A
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA
* * * * *
7177061 AA TA TA -A AA GTA T- TA AA TA TA AA GTA TA TA -A T- TA T- TA AA
1 TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
* * * *
7177100 TA TA -A GTA CA TA AA TA TA TA TA TA TA TA TA TA AA CTA TA AA CTA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA
* * *
7177144 TA AA GTA TA TA TA TA TA TA TA TA TA TA TA TA T- TC TT TA TA -A
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
7177185 T- TA TA CTC TA TA TA TA TA CT- TA TA CTT TA TA T- TA T- TA TA
1 TA TA TA -TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA
*
7177224 TA TG TA TA TA TA
1 TA TA TA TA TA TA
7177236 CTTTATACTA
Statistics
Matches: 307, Mismatches: 59, Indels: 104
0.65 0.13 0.22
Matches are distributed among these distances:
1 28 0.09
2 254 0.83
3 25 0.08
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (2 bp):
TA
Found at i:7176909 original size:22 final size:21
Alignment explanation
Indices: 7176679--7177168 Score: 257
Period size: 22 Copynumber: 23.2 Consensus size: 21
7176669 ATATACTATG
* * *
7176679 TATAAATTATATAGTTTA-AA
1 TATAAAGTATATAATATATAA
* *
7176699 TATAATGTATAAAAGTATATATA
1 TATAAAGTATATAA-TATATA-A
* *
7176722 TATATAAATACAT-ATATAATAA
1 TATA-AAGTATATAATAT-ATAA
*
7176744 TATAAAGTATAATTATATATATA
1 TATAAAGTAT-ATAATATATA-A
7176767 TATAAAG-A-ATAAT-TATAAA
1 TATAAAGTATATAATATAT-AA
* *
7176786 GACTAAAGTATATAAGTAAATAA
1 TA-TAAAGTATATAA-TATATAA
*
7176809 CATAAAGTATATATATATATAA
1 TATAAAGTATATA-ATATATAA
*
7176831 -ACTAAAGTATAT-ATGTA-AA
1 TA-TAAAGTATATAATATATAA
*
7176850 CTATATA-TATAT-ATATATATA
1 -TATAAAGTATATAATATATA-A
*
7176871 TATAAAGT-T-T--TA-GT-A
1 TATAAAGTATATAATATATAA
7176886 TA-A-AGTATATACATATATAA
1 TATAAAGTATATA-ATATATAA
*
7176906 TATATATAGTATATTATATA-AA
1 TATA-A-AGTATATAATATATAA
*
7176928 TATAAAGTATA-ATTATA-AA
1 TATAAAGTATATAATATATAA
* *
7176947 GACTAAAGTATATAAGCATATAA
1 TA-TAAAGTATATAA-TATATAA
7176970 TATAAA-TATATAAGTATATAA
1 TATAAAGTATATAA-TATATAA
* *
7176991 TATAAAATATAAAAGTATATACA
1 TATAAAGTATATAA-TATATA-A
7177014 TAT-AA-TATATATATATATAA
1 TATAAAGTATATA-ATATATAA
7177034 TATAAAGTATATAAGTATATAA
1 TATAAAGTATATAA-TATATAA
* *
7177056 TATAAAATATAAAAGTAT-TAAA
1 TATAAAGTATATAA-TATAT-AA
7177078 TATAAAGTATATAAT-TATTAA
1 TATAAAGTATATAATATA-TAA
*
7177099 -ATATAAGTACATAA-ATATATA
1 TATA-AAGTATATAATATATA-A
*
7177120 TATATA-TATATAA-ACTATAAA
1 TATAAAGTATATAATA-TAT-AA
7177141 CTATAAAGTATATATATATATATA
1 -TATAAAGTATATA-ATATATA-A
7177165 TATA
1 TATA
7177169 TATATATTCT
Statistics
Matches: 374, Mismatches: 40, Indels: 109
0.72 0.08 0.21
Matches are distributed among these distances:
13 3 0.01
14 2 0.01
15 4 0.01
17 1 0.00
18 4 0.01
19 25 0.07
20 69 0.18
21 70 0.19
22 128 0.34
23 49 0.13
24 18 0.05
25 1 0.00
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.38
Consensus pattern (21 bp):
TATAAAGTATATAATATATAA
Found at i:7176982 original size:43 final size:43
Alignment explanation
Indices: 7176679--7177175 Score: 252
Period size: 43 Copynumber: 11.3 Consensus size: 43
7176669 ATATACTATG
* * *
7176679 TATAAAT-TATATAGTTTA-AATATAATGTATAAAAGTATATATA
1 TATAAATATATA-AGTATATAATATAAAGTATATAAGTATATA-A
* *
7176722 TATATAA-ATACATA-TATAATAATATAAAGTATAATTA-TATATATA
1 TATA-AATATATA-AGTAT-ATAATATAAAGTAT-ATAAGTATATA-A
* * * *
7176767 TATAAAGA-ATAATTATA-AAGACTAAAGTATATAAGTAAATAA
1 TATAAATATATAAGTATATAATA-TAAAGTATATAAGTATATAA
* * *
7176809 CATAAAGTATATATA-TATATAA-ACTAAAGTATATATGTA-A-AC
1 TATAAA-TATATA-AGTATATAATA-TAAAGTATATAAGTATATAA
*
7176851 TATATATATAT-A-TATATATATATAAAGTTTTAGTATAAAGTATATACA
1 TATAAATATATAAGTATATA-ATATAAAG---TA-TAT-AAGTATATA-A
*
7176899 TATATAATATATATAGTATATTATATAAA-TATA-AAGTATAATTATAAA
1 TATA-AATATATA-AGTATATAATATAAAGTATATAAG--T-A-TAT-AA
* *
7176947 GACTAAAGTATATAAGCATATAATATAAA-TATATAAGTATATAA
1 TA-TAAA-TATATAAGTATATAATATAAAGTATATAAGTATATAA
*
7176991 TATAAAATATAAAAGTATATACATAT-AA-TATATATA-TATATAA
1 TAT-AAATATATAAGTATATA-ATATAAAGTATATA-AGTATATAA
* *
7177034 TATAAAGTATATAAGTATATAATATAAAATATAAAAGTAT-TAAA
1 TATAAA-TATATAAGTATATAATATAAAGTATATAAGTATAT-AA
* * *
7177078 TATAAAGTATATAATTAT-TAA-ATATAAGTACATAAATATAT-A
1 TATAAA-TATATAAGTATATAATATA-AAGTATATAAGTATATAA
* *
7177120 TATATATATATAAACTATA-AACTATAAAGTATATATA-TATATATA
1 TATAAATATAT-AAGTATATAA-TATAAAGTATATA-AGTATATA-A
*
7177165 TATATATATAT
1 TATAAATATAT
7177176 TCTTTATAAT
Statistics
Matches: 367, Mismatches: 35, Indels: 102
0.73 0.07 0.20
Matches are distributed among these distances:
39 7 0.02
40 6 0.02
41 11 0.03
42 40 0.11
43 99 0.27
44 87 0.24
45 46 0.13
46 7 0.02
47 5 0.01
48 28 0.08
49 18 0.05
51 8 0.02
52 5 0.01
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.38
Consensus pattern (43 bp):
TATAAATATATAAGTATATAATATAAAGTATATAAGTATATAA
Found at i:7177010 original size:86 final size:88
Alignment explanation
Indices: 7176920--7177119 Score: 234
Period size: 87 Copynumber: 2.3 Consensus size: 88
7176910 TATAGTATAT
*
7176920 TATATAAATATAAAGTATA-AT-TATA-AAGACTAAAGTATATAAGCATATAATAT-AAATATAT
1 TATATAAATATAAA-TATATATATATATAAGA-TAAAGTATATAAGCATATAATATAAAATATAA
7176981 AAGTA-TATAATATAAAATATAAAAG
64 AAGTATTA-AATATAAAATATAAAAG
* * *
7177006 TATATACATAT-AATATATATATATATAATATAAAGTATATAAGTATATAATATAAAATATAAAA
1 TATATAAATATAAATATATATATATATAAGATAAAGTATATAAGCATATAATATAAAATATAAAA
* * *
7177070 GTATTAAATATAAAGTATATAAT
66 GTATTAAATATAAAATATAAAAG
* * *
7177093 TAT-TAAATATAAGTACATAAATATATA
1 TATATAAATATAAATATATATATATATA
7177120 TATATATATA
Statistics
Matches: 97, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
84 4 0.04
85 4 0.04
86 42 0.43
87 45 0.46
88 2 0.02
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (88 bp):
TATATAAATATAAATATATATATATATAAGATAAAGTATATAAGCATATAATATAAAATATAAAA
GTATTAAATATAAAATATAAAAG
Found at i:7177058 original size:65 final size:65
Alignment explanation
Indices: 7176964--7177168 Score: 228
Period size: 65 Copynumber: 3.2 Consensus size: 65
7176954 GTATATAAGC
7176964 ATATAATATAAA-TATATAAGTATATAATATAAAATATAAAAGTATATACATATAATATATATAT
1 ATATAATATAAAGTATATAAGTATATAATATAAAATATAAAAGTATATACATATAATATATATAT
*
7177028 ATATAATATAAAGTATATAAGTATATAATATAAAATATAAAAGTAT-TAAATATAA-AGTATATA
1 ATATAATATAAAGTATATAAGTATATAATATAAAATATAAAAGTATATACATATAATA-TATATA
7177091 -
65 T
* * * * *
7177091 ATTATTAA-ATATAAGTACATAAATATAT-ATAT-ATATATATAAACTATAAAC-TATAAAGTAT
1 A-TA-TAATATA-AAGTATATAAGTATATAATATAAAATATA-AAAGTATATACATAT-AA-TAT
7177152 ATATAT
60 ATATAT
7177158 ATATATATATA
1 ATATA-ATATA
7177169 TATATATTCT
Statistics
Matches: 121, Mismatches: 7, Indels: 23
0.80 0.05 0.15
Matches are distributed among these distances:
63 8 0.07
64 44 0.36
65 55 0.45
66 9 0.07
67 5 0.04
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.38
Consensus pattern (65 bp):
ATATAATATAAAGTATATAAGTATATAATATAAAATATAAAAGTATATACATATAATATATATAT
Found at i:7177202 original size:19 final size:19
Alignment explanation
Indices: 7177180--7177216 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7177170 ATATATTCTT
7177180 TATAATTATACTCTATATA
1 TATAATTATACTCTATATA
* *
7177199 TATACTTATACTTTATAT
1 TATAATTATACTCTATAT
7177217 TATTATATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (19 bp):
TATAATTATACTCTATATA
Found at i:7177222 original size:34 final size:31
Alignment explanation
Indices: 7177155--7177628 Score: 121
Period size: 32 Copynumber: 14.5 Consensus size: 31
7177145 AAAGTATATA
*
7177155 TATATATATATATATA-TATATTCTTTATAAT
1 TATATATATATATATACT-TATACTTTATAAT
*
7177186 TATACTCTATATATATACTTATACTTTAT-AT
1 TATA-TATATATATATACTTATACTTTATAAT
* *
7177217 TAT-TATATATGTATA--TATACTTTATACT
1 TATATATATATATATACTTATACTTTATAAT
* * * * *
7177245 AAAACTTTTTATATATA-TTATACTTTATACGT
1 TATA-TATATATATATACTTATACTTTATA-AT
* * * *
7177277 TATATATA-CT-TATACTTGTAGTTTAT-GT
1 TATATATATATATATACTTATACTTTATAAT
*
7177305 GTATATATA-CT-TA-A--TATACTTTAT-AT
1 -TATATATATATATATACTTATACTTTATAAT
* * *
7177331 TATATACTTATATACTTTAGTCTTTATA-ATTATACTT
1 TATATA--TATATA-TATA--C-TTATACTTTATA-AT
*
7177368 TATATATATATATAATGTGCTTATACTTTATATTAAT
1 TATATATATATAT-A--TACTTATAC-TT-TA-TAAT
* *
7177405 TATATATGTATATATACTTTATAC--TAAAACT
1 TATATATATATATATAC-TTATACTTTATAA-T
*
7177436 T-TATATATATATATACATATATACTTTATATT
1 TATATATATATATATAC-T-TATACTTTATAAT
** *
7177468 TA-ATACTTATATACTTATTTTTAATACTTATATACTT
1 TATATA--TATATA--TATACTT-ATACTT-TATA-AT
* *
7177505 TATATTATATACTTATATACTTTTATCTTTATAATTAT
1 TATA-TATATA-TA-TATACTTATA-CTTTAT-A--AT
7177543 ACTTTATATATATATAATATACTTATACTTTAT-AT
1 ----TATATATATAT-ATATACTTATACTTTATAAT
*
7177578 TACTATATATGTATATATACTTTATAC--TAAAACTT
1 TA-TATATA--TATATATAC-TTATACTTTATAA--T
7177613 TATATATATATATATA
1 TATATATATATATATA
7177629 TATATATAAA
Statistics
Matches: 335, Mismatches: 48, Indels: 119
0.67 0.10 0.24
Matches are distributed among these distances:
25 6 0.02
26 9 0.03
27 12 0.04
28 6 0.02
29 26 0.08
30 37 0.11
31 34 0.10
32 44 0.13
33 11 0.03
34 30 0.09
35 29 0.09
36 18 0.05
37 40 0.12
38 5 0.01
39 8 0.02
40 10 0.03
41 6 0.02
42 4 0.01
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (31 bp):
TATATATATATATATACTTATACTTTATAAT
Found at i:7177283 original size:59 final size:58
Alignment explanation
Indices: 7177153--7177622 Score: 170
Period size: 59 Copynumber: 7.8 Consensus size: 58
7177143 ATAAAGTATA
* * *
7177153 TATATATATATATATATATATATTCTTTATAATTATACTCTATATATATACTTATACTT
1 TATAT-TATATATATATATATATACTTTATAATAAAACTCTATATATATACTTATACTT
* * * *
7177212 TATATTATTATATATGTATATATACTTTATACTAAAACTTTTTATATATA-TTATACTT
1 TATATTA-TATATATATATATATACTTTATAATAAAACTCTATATATATACTTATACTT
* * * * ** * *
7177270 TATACGT-TATATATA-CT-TATAC-TTGTAGT-TTA-TGTGTATATATACTTAATATACTT
1 TATA-TTATATATATATATATATACTTTATAATAAAACTCTATATATATAC-T--TATACTT
* * * *
7177326 TATATTATATACT-TATATACTTTAGTCTTTATAATTATACTTTATATATATATATAATGTGCTT
1 TATATTATATA-TATATATA-TATA--CTTTATAATAAAAC----TCTATATATAT-A----CTT
7177390 ATACTT
53 ATACTT
* * * *
7177396 TATATTAATTATATATGTATATATACTTTATACTAAAACTTTATATATATA--TATACATA
1 TATATT-A-TATATATATATATATACTTTATAATAAAACTCTATATATATACTTATAC-TT
* ** * *
7177455 TATACTT-TATATTTAATACTTATATAC-TTATTTTTAATACT-TATATACTTTATATTATATAC
1 TATA-TTATATATAT-ATA--TATATACTTTA-TAATAAAACTCTATATA---TATACT-TATAC
7177517 TT
57 TT
* * * *
7177519 ATATACTTTTATCTTTATA-ATTATACTTTAT-AT---A-TATATA-ATATACTTATACTT
1 -TATA-TTATATATATATATA-TATACTTTATAATAAAACTCTATATATATACTTATACTT
* * *
7177573 TATATTACTATATATGTATATATACTTTATACTAAAACTTTATATATATA
1 TATATTA-TATATATATATATATACTTTATAATAAAACTCTATATATATA
7177623 TATATATATA
Statistics
Matches: 312, Mismatches: 46, Indels: 106
0.67 0.10 0.23
Matches are distributed among these distances:
52 12 0.04
53 22 0.07
54 15 0.05
55 11 0.04
56 18 0.06
57 16 0.05
58 28 0.09
59 68 0.22
60 16 0.05
61 1 0.00
62 11 0.04
63 8 0.03
64 5 0.02
65 25 0.08
66 6 0.02
68 9 0.03
69 12 0.04
70 13 0.04
71 5 0.02
72 10 0.03
73 1 0.00
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.52
Consensus pattern (58 bp):
TATATTATATATATATATATATACTTTATAATAAAACTCTATATATATACTTATACTT
Found at i:7177302 original size:23 final size:24
Alignment explanation
Indices: 7177252--7177381 Score: 75
Period size: 23 Copynumber: 5.6 Consensus size: 24
7177242 ACTAAAACTT
7177252 TTTATATATATTATACTTTATACG
1 TTTATATATATTATACTTTATACG
*
7177276 -TTATATATACTTATAC-TTGTA-G
1 TTTATATATA-TTATACTTTATACG
* *
7177298 TTTATGTGTATATATACTTAATATAC-
1 TTTATATATAT-TATACTT--TATACG
7177324 TTTATAT-TA-TATACTTATATAC-
1 TTTATATATATTATACTT-TATACG
* * *
7177346 TTTA-GTCT-TTATA-ATTATAC-
1 TTTATATATATTATACTTTATACG
7177366 TTTATATATATATATA
1 TTTATATATAT-TATA
7177382 ATGTGCTTAT
Statistics
Matches: 85, Mismatches: 9, Indels: 25
0.71 0.08 0.21
Matches are distributed among these distances:
20 9 0.11
21 4 0.05
22 18 0.21
23 36 0.42
24 7 0.08
25 2 0.02
26 9 0.11
ACGTcount: A:0.35, C:0.08, G:0.05, T:0.53
Consensus pattern (24 bp):
TTTATATATATTATACTTTATACG
Found at i:7177341 original size:13 final size:14
Alignment explanation
Indices: 7177318--7177636 Score: 132
Period size: 13 Copynumber: 23.4 Consensus size: 14
7177308 TATATACTTA
7177318 ATATACTTTATATT
1 ATATACTTTATATT
7177332 ATATACTTATATACTT
1 ATATACTT-TATA-TT
*
7177348 -TAGT-CTTTATAAT
1 ATA-TACTTTATATT
7177361 -TATACTTTATA-T
1 ATATACTTTATATT
*
7177373 ATATA-TATA-ATGT
1 ATATACTTTATAT-T
*
7177386 GCTTATACTTTATATT
1 --ATATACTTTATATT
* *
7177402 A-ATTA-TATATGTAT
1 ATA-TACTTTATAT-T
*
7177416 ATATACTTTATACT
1 ATATACTTTATATT
*
7177430 A-AAACTTTATA-T
1 ATATACTTTATATT
* *
7177442 ATATA-TATACA-T
1 ATATACTTTATATT
7177454 ATATACTTTATATT
1 ATATACTTTATATT
7177468 -TAATACTTATATACTT
1 AT-ATACTT-TATA-TT
7177484 AT-T--TTTAATACTT
1 ATATACTTT-ATA-TT
7177497 ATATACTTTATATT
1 ATATACTTTATATT
7177511 ATATACTTATATACTT
1 ATATACTT-TATA-TT
* *
7177527 TTAT-CTTTATAAT
1 ATATACTTTATATT
7177540 -TATACTTTATA-T
1 ATATACTTTATATT
* *
7177552 ATATA-TAATATACT
1 ATATACT-TTATATT
7177566 -TATACTTTATATT
1 ATATACTTTATATT
* *
7177579 ACTATA-TATGTA-T
1 A-TATACTTTATATT
*
7177592 ATATACTTTATACT
1 ATATACTTTATATT
*
7177606 A-AAACTTTATA-T
1 ATATACTTTATATT
*
7177618 ATATA-TATATATAT
1 ATATACTTTATAT-T
7177632 ATATA
1 ATATA
7177637 AAAGTATATA
Statistics
Matches: 237, Mismatches: 28, Indels: 80
0.69 0.08 0.23
Matches are distributed among these distances:
11 1 0.00
12 34 0.14
13 89 0.38
14 56 0.24
15 37 0.16
16 17 0.07
17 3 0.01
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.52
Consensus pattern (14 bp):
ATATACTTTATATT
Found at i:7177413 original size:28 final size:27
Alignment explanation
Indices: 7177359--7177427 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 27
7177349 AGTCTTTATA
7177359 ATTATACTTTATATATATATATAATGT
1 ATTATACTTTATATATATATATAATGT
*
7177386 GCTTATACTTTATAT-TA-ATTATATATGT
1 -ATTATACTTTATATATATA-TATA-ATGT
7177414 ATATATACTTTATA
1 AT-TATACTTTATA
7177428 CTAAAACTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
26 1 0.03
27 7 0.19
28 28 0.78
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (27 bp):
ATTATACTTTATATATATATATAATGT
Found at i:7177447 original size:30 final size:30
Alignment explanation
Indices: 7177389--7177603 Score: 109
Period size: 29 Copynumber: 7.8 Consensus size: 30
7177379 ATAATGTGCT
* * *
7177389 TATACTTTATATTAAT--TATATATGTATA
1 TATACTTTATACTAATACTTTATATATATA
*
7177417 TATACTTTATACTAAAACTTTATATATATA
1 TATACTTTATACTAATACTTTATATATATA
7177447 TATAC---ATA-T-ATACTTTATAT-T-TA
1 TATACTTTATACTAATACTTTATATATATA
* *
7177470 -ATACTTATATACTTAT-TTTTA-ATACT-TA
1 TATACTT-TATACTAATACTTTATATA-TATA
* *
7177498 TATACTTTATATTATATAC-TTATATACT-TT
1 TATACTTTATACTA-ATACTTTATATA-TATA
* *
7177528 TAT-CTTTATAATTATACTTTATATATATA
1 TATACTTTATACTAATACTTTATATATATA
*
7177557 TA-A---TATACTTATACTTTATAT-TACTA
1 TATACTTTATACTAATACTTTATATATA-TA
*
7177583 TATA-TGTATA-T-ATACTTTATA
1 TATACTTTATACTAATACTTTATA
7177604 CTAAAACTTT
Statistics
Matches: 152, Mismatches: 14, Indels: 43
0.73 0.07 0.21
Matches are distributed among these distances:
22 4 0.03
23 2 0.01
24 1 0.01
25 12 0.08
26 27 0.18
27 19 0.12
28 30 0.20
29 33 0.22
30 24 0.16
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.53
Consensus pattern (30 bp):
TATACTTTATACTAATACTTTATATATATA
Found at i:7177530 original size:10 final size:8
Alignment explanation
Indices: 7177308--7177569 Score: 110
Period size: 8 Copynumber: 34.5 Consensus size: 8
7177298 TTTATGTGTA
7177308 TATATACT
1 TATATACT
7177316 TAATATACT
1 T-ATATACT
7177325 T-TATA-T
1 TATATACT
7177331 TATATACT
1 TATATACT
7177339 TATATACT
1 TATATACT
7177347 T-TAGT-CT
1 TATA-TACT
*
7177354 T-TATA-A
1 TATATACT
7177360 T-TATACTT
1 TATATAC-T
7177368 TATATA-T
1 TATATACT
*
7177375 ATATATAAT
1 -TATATACT
*
7177384 GTGCTTATACTT
1 -T--ATATAC-T
*
7177396 TATATTAAT
1 TATA-TACT
*
7177405 TATATATGT
1 TATATA-CT
7177414 ATATATACT
1 -TATATACT
7177423 T-TATAC-
1 TATATACT
*
7177429 TA-AAACTT
1 TATATAC-T
7177437 TATATA-T
1 TATATACT
*
7177444 ATATATACA
1 -TATATACT
7177453 TATATACT
1 TATATACT
*
7177461 T-TATATT
1 TATATACT
7177468 TA-ATACT
1 TATATACT
7177475 TATATACT
1 TATATACT
*
7177483 TAT-T-TT
1 TATATACT
7177489 TA-ATACT
1 TATATACT
7177496 TATATACT
1 TATATACT
7177504 T-TATA-T
1 TATATACT
7177510 TATATACT
1 TATATACT
7177518 TATATACT
1 TATATACT
*
7177526 TTTAT-CT
1 TATATACT
*
7177533 T-TATA-A
1 TATATACT
7177539 T-TATACT
1 TATATACT
7177546 T-TATA--
1 TATATACT
7177551 TATATA-T
1 TATATACT
*
7177558 AATATACT
1 TATATACT
7177566 TATA
1 TATA
7177570 CTTTATATTA
Statistics
Matches: 198, Mismatches: 22, Indels: 68
0.69 0.08 0.24
Matches are distributed among these distances:
5 1 0.01
6 30 0.15
7 59 0.30
8 69 0.35
9 25 0.13
10 8 0.04
11 5 0.03
12 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (8 bp):
TATATACT
Found at i:7177553 original size:136 final size:138
Alignment explanation
Indices: 7177306--7177603 Score: 319
Period size: 136 Copynumber: 2.2 Consensus size: 138
7177296 AGTTTATGTG
*
7177306 TATATATACTTAATATACTTTATATTATATACTTATATACTTTAGTCTTTATAATTATACTTTAT
1 TATATATACAT-ATATACTTTATATTATATACTTATATACTTTAGTCTTTATAATTATACTTTAT
* * * *
7177371 ATATATATATAATGTGCTTATACTTTATATTAATTATATATGTATATATACT-TTATACTAAAAC
65 ATATATATATAATATACTTATACTTTATATTAATTATATATATATATATA-TAATATACTAAAAC
7177435 TTTATA-TA-
129 TTTATATTAC
* *
7177443 TATATATACATATATACTTTATATT-TAATACTTATATAC-TTA-TTTTTAATACTTATATACTT
1 TATATATACATATATACTTTATATTAT-ATACTTATATACTTTAGTCTTT-ATA-AT-TATACTT
* * *
7177505 TATAT-TATATACTTATATACTTTTA-TCTT-TA-TAATTATACTTTATATATATATAATATACT
62 TATATATATATA-TAATATACTTATACT-TTATATTAATTATA-TATATATATATATAATATACT
* *
7177566 TATACTTTATATTAC
124 AAAACTTTATATTAC
**
7177581 TATATATGTATATATACTTTATA
1 TATATATACATATATACTTTATA
7177604 CTAAAACTTT
Statistics
Matches: 137, Mismatches: 14, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
134 4 0.03
135 16 0.12
136 61 0.45
137 35 0.26
138 21 0.15
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (138 bp):
TATATATACATATATACTTTATATTATATACTTATATACTTTAGTCTTTATAATTATACTTTATA
TATATATATAATATACTTATACTTTATATTAATTATATATATATATATATAATATACTAAAACTT
TATATTAC
Found at i:7177554 original size:2 final size:2
Alignment explanation
Indices: 7177547--7177674 Score: 56
Period size: 2 Copynumber: 64.0 Consensus size: 2
7177537 AATTATACTT
*
7177547 TA TA TA TA TA TA -A TA TA CT- TA TA CTT TA TA T- TA CTA TA TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA -TA TA TA
* * * *
7177587 TG TA TA TA TA CTT TA TA CTA -A AA CTT TA TA TA TA TA TA TA TA
1 TA TA TA TA TA -TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA
* *
7177629 TA TA TA TA -A AA GTA TA TA -A TA TA -A TA TA AA GTA TA TA -A TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
*
7177669 TG TA TA
1 TA TA TA
7177675 AAGTTTTAGT
Statistics
Matches: 96, Mismatches: 14, Indels: 32
0.68 0.10 0.23
Matches are distributed among these distances:
1 8 0.08
2 79 0.82
3 9 0.09
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (2 bp):
TA
Found at i:7177629 original size:34 final size:32
Alignment explanation
Indices: 7177543--7177630 Score: 99
Period size: 34 Copynumber: 2.7 Consensus size: 32
7177533 TTATAATTAT
**
7177543 ACTTTATATATATATA-ATATACTTATACTTT
1 ACTTTATATATATATATATATACTTATACTAA
*
7177574 A-TATTACTATATATGTATATATACTTTATACTAAA
1 ACT-TTA-TATATATATATATATAC-TTATACT-AA
7177609 ACTTTATATATATATATATATA
1 ACTTTATATATATATATATATA
7177631 TATATAAAAG
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
30 1 0.02
31 4 0.09
32 9 0.19
33 6 0.13
34 22 0.47
35 4 0.09
36 1 0.02
ACGTcount: A:0.42, C:0.08, G:0.01, T:0.49
Consensus pattern (32 bp):
ACTTTATATATATATATATATACTTATACTAA
Found at i:7177659 original size:19 final size:19
Alignment explanation
Indices: 7177619--7177678 Score: 77
Period size: 19 Copynumber: 3.1 Consensus size: 19
7177609 ACTTTATATA
7177619 TATATATATATATATATAAAAG
1 TATATA-ATATA-ATAT-AAAG
7177641 TATATAATATAATATAAAG
1 TATATAATATAATATAAAG
*
7177660 TATATAATAT-GTATAAAG
1 TATATAATATAATATAAAG
7177678 T
1 T
7177679 TTTAGTATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
18 8 0.22
19 14 0.38
20 4 0.11
21 5 0.14
22 6 0.16
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (19 bp):
TATATAATATAATATAAAG
Found at i:7177781 original size:23 final size:22
Alignment explanation
Indices: 7177749--7177805 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
7177739 TATAGTTTTT
* *
7177749 TTTATATATATACACTTTATAC
1 TTTAAATATATACACCTTATAC
* *
7177771 TTTAAAGTATATATACCTTATAG
1 TTTAAA-TATATACACCTTATAC
*
7177794 TTTATATATATA
1 TTTAAATATATA
7177806 ATGTATTAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 11 0.38
23 18 0.62
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.49
Consensus pattern (22 bp):
TTTAAATATATACACCTTATAC
Found at i:7179846 original size:21 final size:21
Alignment explanation
Indices: 7179781--7179875 Score: 124
Period size: 21 Copynumber: 4.7 Consensus size: 21
7179771 TATGAGACAG
* *
7179781 GGGGTATCAATACCT-CTTG-
1 GGGGTATCGATACCTCCTGGA
*
7179800 GGGGTATCAATACCTCCTGG-
1 GGGGTATCGATACCTCCTGGA
*
7179820 GGGGTATCGGTACCTCCTGGA
1 GGGGTATCGATACCTCCTGGA
7179841 GGGGTATCGATACCTCCTGGA
1 GGGGTATCGATACCTCCTGGA
*
7179862 GGGGTATCGGTACC
1 GGGGTATCGATACC
7179876 CTCCGAGCAA
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
19 15 0.22
20 21 0.30
21 33 0.48
ACGTcount: A:0.18, C:0.23, G:0.34, T:0.25
Consensus pattern (21 bp):
GGGGTATCGATACCTCCTGGA
Found at i:7189119 original size:21 final size:21
Alignment explanation
Indices: 7189101--7189143 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
7189091 AGTATATATG
7189101 TATATATATATAAAGTATAAAA
1 TATATA-ATATAAAGTATAAAA
7189123 TATATAATATAAAGTAATAAA
1 TATATAATATAAAGT-ATAAA
7189144 GTGTTTGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (21 bp):
TATATAATATAAAGTATAAAA
Found at i:7189121 original size:7 final size:7
Alignment explanation
Indices: 7189073--7189307 Score: 89
Period size: 7 Copynumber: 32.6 Consensus size: 7
7189063 TATATACATA
*
7189073 TATAAAC
1 TATAAAG
7189080 TATAAAG
1 TATAAAG
7189087 TAT-AAG
1 TATAAAG
*
7189093 TATATATG
1 TATA-AAG
7189101 TATATATA-
1 TATA-A-AG
7189109 TATAAAG
1 TATAAAG
*
7189116 TATAAAA
1 TATAAAG
7189123 TATATAA-
1 TATA-AAG
7189130 TATAAAG
1 TATAAAG
7189137 TAATAAAG
1 T-ATAAAG
* **
7189145 TGT-TTG
1 TATAAAG
*
7189151 GATATAAG
1 TATA-AAG
*
7189159 TTTTAAAG
1 -TATAAAG
7189167 AATATAAA-
1 --TATAAAG
7189175 TATAAA-
1 TATAAAG
7189181 TATTAAA-
1 TA-TAAAG
7189188 TATAAAG
1 TATAAAG
7189195 TATATAAG
1 TATA-AAG
*
7189203 TACATAAG
1 TATA-AAG
7189211 TACTAAAG
1 TA-TAAAG
7189219 TATATAA-
1 TATA-AAG
7189226 TATAAAG
1 TATAAAG
*
7189233 TATTAAAC
1 TA-TAAAG
7189241 TATATAA-
1 TATA-AAG
7189248 TAT-AAG
1 TATAAAG
* *
7189254 TATTAAC
1 TATAAAG
7189261 TATAAAG
1 TATAAAG
7189268 TATTAAAG
1 TA-TAAAG
*
7189276 TATATAAA
1 TATA-AAG
7189284 TAT-AAG
1 TATAAAG
7189290 TATTAAA-
1 TA-TAAAG
*
7189297 TATAAAT
1 TATAAAG
7189304 TATA
1 TATA
7189308 TTAATTATAA
Statistics
Matches: 179, Mismatches: 23, Indels: 52
0.70 0.09 0.20
Matches are distributed among these distances:
5 2 0.01
6 36 0.20
7 67 0.37
8 66 0.37
9 8 0.04
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (7 bp):
TATAAAG
Found at i:7189142 original size:29 final size:28
Alignment explanation
Indices: 7189064--7189145 Score: 78
Period size: 29 Copynumber: 2.9 Consensus size: 28
7189054 TTTGTACTTT
*
7189064 ATATACATATATAAACT-ATAAAGTATAA
1 ATATATATATATAAA-TAATAAAGTATAA
* * *
7189092 GTATATATGTATATATATATAAAGTATAA
1 ATATATATATATAAATA-ATAAAGTATAA
7189121 A-ATATATAATATAAAGTAATAAAGT
1 ATATATAT-ATATAAA-TAATAAAGT
7189146 GTTTGGATAT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
27 1 0.02
28 17 0.40
29 23 0.53
30 2 0.05
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.35
Consensus pattern (28 bp):
ATATATATATATAAATAATAAAGTATAA
Found at i:7189186 original size:22 final size:22
Alignment explanation
Indices: 7189152--7189296 Score: 56
Period size: 22 Copynumber: 6.6 Consensus size: 22
7189142 AAGTGTTTGG
* *
7189152 ATATAAGTTTTAAAGAATATAA
1 ATATAAATATTAAAGAATATAA
7189174 ATATAAATATT--A-AATATAA
1 ATATAAATATTAAAGAATATAA
* * * *
7189193 AGTATATA-AGTACATAAGTACTAA
1 A-TATAAATATTAAAGAA-TA-TAA
*
7189217 AGTATATAATA-TAAAGTAT-TAA
1 A-TATA-AATATTAAAGAATATAA
*
7189239 ACTATATAATA-T-AAGTAT-TAA
1 A-TATA-AATATTAAAGAATATAA
* *
7189260 CTATAAAGTATTAAAGTATATAA
1 ATATAAA-TATTAAAGAATATAA
*
7189283 ATATAAGTATTAAA
1 ATATAAATATTAAA
7189297 TATAAATTAT
Statistics
Matches: 99, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
19 12 0.12
20 12 0.12
21 11 0.11
22 38 0.38
23 10 0.10
24 10 0.10
25 5 0.05
26 1 0.01
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.35
Consensus pattern (22 bp):
ATATAAATATTAAAGAATATAA
Found at i:7189211 original size:16 final size:15
Alignment explanation
Indices: 7189192--7189234 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
7189182 ATTAAATATA
7189192 AAGTATATAAGTACAT
1 AAGTATA-AAGTACAT
*
7189208 AAGTACTAAAGTATAT
1 AAGTA-TAAAGTACAT
7189224 AA-TATAAAGTA
1 AAGTATAAAGTA
7189235 TTAAACTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 7 0.28
15 2 0.08
16 14 0.56
17 2 0.08
ACGTcount: A:0.53, C:0.05, G:0.12, T:0.30
Consensus pattern (15 bp):
AAGTATAAAGTACAT
Found at i:7189268 original size:73 final size:72
Alignment explanation
Indices: 7189168--7189302 Score: 177
Period size: 73 Copynumber: 1.9 Consensus size: 72
7189158 GTTTTAAAGA
*
7189168 ATATAAATATAAATATTAAATATAAAGTA-TATAAGTACATAAGTACTAAAGTA-TATAATATAA
1 ATATAAATATAAATATTAAATATAAAGTATTA-AAGTACATAAATA-T-AAGTATTA-AATATAA
7189231 AGTATTAAACT
62 AGTATTAAACT
* * *
7189242 ATAT-AATATAAGTATTAACTATAAAGTATTAAAGTATATAAATATAAGTATTAAATATAAA
1 ATATAAATATAAATATTAAATATAAAGTATTAAAGTACATAAATATAAGTATTAAATATAAA
7189303 TTATATTAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
71 13 0.24
72 3 0.05
73 33 0.60
74 6 0.11
ACGTcount: A:0.56, C:0.03, G:0.07, T:0.35
Consensus pattern (72 bp):
ATATAAATATAAATATTAAATATAAAGTATTAAAGTACATAAATATAAGTATTAAATATAAAGTA
TTAAACT
Found at i:7189275 original size:57 final size:60
Alignment explanation
Indices: 7189167--7189300 Score: 167
Period size: 57 Copynumber: 2.3 Consensus size: 60
7189157 AGTTTTAAAG
*
7189167 AATATAAA-TA-TAAATAT-TAAATATAAAGTATATAAGTACATAAGTACTAAAGTATAT
1 AATATAAAGTATTAAATATATAAATATAAAGTATATAACTACATAAGTACTAAAGTATAT
* *
7189224 AATATAAAGTATTAAACTATAT-AATAT-AAGTAT-TAACTATA-AAGTATTAAAGTATAT
1 AATATAAAGTATTAAA-TATATAAATATAAAGTATATAACTACATAAGTACTAAAGTATAT
7189281 AA-ATATAAGTATTAAATATA
1 AATATA-AAGTATTAAATATA
7189301 AATTATATTA
Statistics
Matches: 69, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
56 7 0.10
57 35 0.51
58 8 0.12
59 10 0.14
60 8 0.12
61 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (60 bp):
AATATAAAGTATTAAATATATAAATATAAAGTATATAACTACATAAGTACTAAAGTATAT
Found at i:7189308 original size:22 final size:20
Alignment explanation
Indices: 7189167--7189307 Score: 87
Period size: 22 Copynumber: 6.7 Consensus size: 20
7189157 AGTTTTAAAG
7189167 AATATAAATATA-AATATTA
1 AATATAAATATATAATATTA
*
7189186 AATATAAAGTATATAAGTACATA
1 AATATAAA-TATATAA-TA-TTA
*
7189209 AGTACTAAAGTATATAATA-TA
1 AATA-TAAA-TATATAATATTA
7189230 AAGTATTAAACTATATAATA-TA
1 AA-TA-TAAA-TATATAATATTA
* *
7189252 AGTATTAACTATA-AAGTATTA
1 AATA-TAAATATATAA-TATTA
7189273 AAGTATATAA-ATATAAGTATTA
1 AA-TATA-AATATATAA-TATTA
7189295 AATATAAAT-TATA
1 AATATAAATATATA
7189308 TTAATTATAA
Statistics
Matches: 101, Mismatches: 9, Indels: 23
0.76 0.07 0.17
Matches are distributed among these distances:
19 10 0.10
20 16 0.16
21 23 0.23
22 33 0.33
23 7 0.07
24 12 0.12
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.35
Consensus pattern (20 bp):
AATATAAATATATAATATTA
Found at i:7189321 original size:73 final size:72
Alignment explanation
Indices: 7189168--7189328 Score: 170
Period size: 73 Copynumber: 2.2 Consensus size: 72
7189158 GTTTTAAAGA
*
7189168 ATATAAATATAAATATTAAATATAAAGTATATAAGTACATAAGTACTAAAGTATATAATATAAAG
1 ATAT-AATAT-AATATTAAATATAAAGTATATAAGTACATAAATACTAAAGTATATAATATAAAG
7189233 TATTAAACT
64 TATTAAACT
* *
7189242 ATATAATATAAGTATTAACTATAAAGTAT-TAAAGTATATAAATA-T-AAGTAT-TAAATATAAA
1 ATATAATATAA-TATTAAATATAAAGTATAT-AAGTACATAAATACTAAAGTATAT-AATATAAA
* * *
7189303 TTATATTAATT
63 GTAT-TAAACT
7189314 ATAATAAT-TAATATT
1 AT-ATAATATAATATT
7189329 TTATTATAAC
Statistics
Matches: 76, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
70 1 0.01
71 21 0.28
72 13 0.17
73 37 0.49
74 4 0.05
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.38
Consensus pattern (72 bp):
ATATAATATAATATTAAATATAAAGTATATAAGTACATAAATACTAAAGTATATAATATAAAGTA
TTAAACT
Found at i:7192181 original size:16 final size:15
Alignment explanation
Indices: 7192162--7192215 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
7192152 CGAGAGCAAT
7192162 CCGAATCGAAATTAAC
1 CCGAA-CGAAATTAAC
* *
7192178 CCGAACCGAAAGTAAA
1 CCGAA-CGAAATTAAC
7192194 CCGAACAGAAATTAAC
1 CCGAAC-GAAATTAAC
*
7192210 TCGAAC
1 CCGAAC
7192216 CAAAAGCAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
15 1 0.03
16 30 0.97
ACGTcount: A:0.46, C:0.26, G:0.15, T:0.13
Consensus pattern (15 bp):
CCGAACGAAATTAAC
Found at i:7192205 original size:32 final size:32
Alignment explanation
Indices: 7192156--7192279 Score: 115
Period size: 32 Copynumber: 3.9 Consensus size: 32
7192146 CGAAATCGAG
*
7192156 AGCAATCCGAA-TCGAAATTAACCCGAACCGAA
1 AGCAAACCGAACT-GAAATTAACCCGAACCGAA
* * * *
7192188 AGTAAACCGAACAGAAATTAACTCGAACCAAA
1 AGCAAACCGAACTGAAATTAACCCGAACCGAA
** * * *
7192220 AGCAATTCGAACTGAAATTAATCCAAACTGAA
1 AGCAAACCGAACTGAAATTAACCCGAACCGAA
* * *
7192252 AGCAACCCAAACTGAAACTAACCCGAAC
1 AGCAAACCGAACTGAAATTAACCCGAAC
7192280 AAAAAAAATG
Statistics
Matches: 71, Mismatches: 20, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
32 71 1.00
ACGTcount: A:0.48, C:0.26, G:0.13, T:0.14
Consensus pattern (32 bp):
AGCAAACCGAACTGAAATTAACCCGAACCGAA
Found at i:7192274 original size:16 final size:16
Alignment explanation
Indices: 7192229--7192275 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
7192219 AAGCAATTCG
* *
7192229 AACTGAAATTAATCCA
1 AACTGAAACTAACCCA
7192245 AACTGAAAGC-AACCCA
1 AACTGAAA-CTAACCCA
7192261 AACTGAAACTAACCC
1 AACTGAAACTAACCC
7192276 GAACAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 1 0.04
16 26 0.96
ACGTcount: A:0.49, C:0.28, G:0.09, T:0.15
Consensus pattern (16 bp):
AACTGAAACTAACCCA
Found at i:7192279 original size:64 final size:64
Alignment explanation
Indices: 7192156--7192284 Score: 143
Period size: 64 Copynumber: 2.0 Consensus size: 64
7192146 CGAAATCGAG
* * * * * *
7192156 AGCAATCCGAATCGAAATTAACCCGAACCGAAAGTAAACCGAACAGAAATTAACTCGAACCAAA
1 AGCAATCCGAATCGAAATTAACCCAAACCGAAAGCAAACCAAACAGAAACTAACCCGAACAAAA
* * * * *
7192220 AGCAATTCGAA-CTGAAATTAATCCAAACTGAAAGCAACCCAAACTGAAACTAACCCGAACAAAA
1 AGCAATCCGAATC-GAAATTAACCCAAACCGAAAGCAAACCAAACAGAAACTAACCCGAACAAAA
7192284 A
1 A
7192285 AAATGAACCG
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
63 1 0.02
64 52 0.98
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.13
Consensus pattern (64 bp):
AGCAATCCGAATCGAAATTAACCCAAACCGAAAGCAAACCAAACAGAAACTAACCCGAACAAAA
Found at i:7192309 original size:16 final size:16
Alignment explanation
Indices: 7192288--7192383 Score: 65
Period size: 16 Copynumber: 6.0 Consensus size: 16
7192278 ACAAAAAAAA
*
7192288 TGAACCGAAAGAAACC
1 TGAACCGAAAGTAACC
7192304 TGAACCGAAA-TCAA-C
1 TGAACCGAAAGT-AACC
*
7192319 TCGAACC-AAATTTAACC
1 T-GAACCGAAA-GTAACC
*
7192336 TG-ACTCGAAAGAAACC
1 TGAAC-CGAAAGTAACC
* **
7192352 CGAATAGAAAGTAACC
1 TGAACCGAAAGTAACC
*
7192368 TGAACTGAAAGTAACC
1 TGAACCGAAAGTAACC
7192384 CAAACTGACT
Statistics
Matches: 62, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
15 7 0.11
16 48 0.77
17 7 0.11
ACGTcount: A:0.46, C:0.24, G:0.16, T:0.15
Consensus pattern (16 bp):
TGAACCGAAAGTAACC
Found at i:7192389 original size:16 final size:16
Alignment explanation
Indices: 7192358--7192391 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7192348 AACCCGAATA
**
7192358 GAAAGTAACCTGAACT
1 GAAAGTAACCCAAACT
7192374 GAAAGTAACCCAAACT
1 GAAAGTAACCCAAACT
7192390 GA
1 GA
7192392 CTTTAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.21, G:0.18, T:0.15
Consensus pattern (16 bp):
GAAAGTAACCCAAACT
Found at i:7195112 original size:19 final size:20
Alignment explanation
Indices: 7195070--7195113 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
7195060 AATATGATGA
*
7195070 AAATTAATGTTAGAGTGTTG
1 AAATTAATGTTAGAATGTTG
*
7195090 AAATTTATGTTAGAATG-TG
1 AAATTAATGTTAGAATGTTG
7195109 AAATT
1 AAATT
7195114 GGATCATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (20 bp):
AAATTAATGTTAGAATGTTG
Found at i:7206120 original size:43 final size:43
Alignment explanation
Indices: 7206059--7206143 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
7206049 CCGTGCCGGG
*
7206059 AACATATCAAGTACTTGAAACGGGGTTCCTTCACCATCCCAGA
1 AACATATCAAATACTTGAAACGGGGTTCCTTCACCATCCCAGA
*
7206102 AACATATCAAATACTTGAAACGGGGTTCCTTCACCGTCCCAG
1 AACATATCAAATACTTGAAACGGGGTTCCTTCACCATCCCAG
7206144 TGCTTCATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (43 bp):
AACATATCAAATACTTGAAACGGGGTTCCTTCACCATCCCAGA
Found at i:7209907 original size:120 final size:122
Alignment explanation
Indices: 7209697--7209919 Score: 362
Period size: 120 Copynumber: 1.8 Consensus size: 122
7209687 TGTTTAATAT
7209697 ATTCAACAAAACAATGTTGATAATGAATTTCTGTTTCGGGATATTAATTTTACTAAATTCCCGCC
1 ATTCAACAAAACAATGTTGATAATGAATTTCTGTTTCGGGATATTAATTTTACTAAATTCCCGCC
*
7209762 GTTTAACAGAAATTACTTAATTGTTGGATTTTAGTTTTAAATCCTGATATTTAACGA
66 ATTTAACAGAAATTACTTAATTGTTGGATTTTAGTTTTAAATCCTGATATTTAACGA
* * ** *
7209819 ATTCAACAAAATAGTGTTGATTGTGAATTTCTGTTTCGGG-T-TTAGTTTTACTAAATTCCCGCC
1 ATTCAACAAAACAATGTTGATAATGAATTTCTGTTTCGGGATATTAATTTTACTAAATTCCCGCC
7209882 ATTTAACAGAAATTA-TTCAATTGTTGGATTTTAGTTTT
66 ATTTAACAGAAATTACTT-AATTGTTGGATTTTAGTTTT
7209920 GACTAAAATT
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
119 2 0.02
120 55 0.59
121 1 0.01
122 36 0.38
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (122 bp):
ATTCAACAAAACAATGTTGATAATGAATTTCTGTTTCGGGATATTAATTTTACTAAATTCCCGCC
ATTTAACAGAAATTACTTAATTGTTGGATTTTAGTTTTAAATCCTGATATTTAACGA
Found at i:7228135 original size:37 final size:37
Alignment explanation
Indices: 7228093--7228197 Score: 156
Period size: 37 Copynumber: 2.8 Consensus size: 37
7228083 CCTTTTCGTC
7228093 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
7228130 TTACTAGGATTCAAACTCCTAAAAACAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
7228167 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
7228198 CCACAAGCAC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:7228742 original size:2 final size:2
Alignment explanation
Indices: 7228737--7228769 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7228727 TTAATATTAT
*
7228737 TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7228770 TTTACTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7233554 original size:21 final size:20
Alignment explanation
Indices: 7233529--7233579 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
7233519 AGAAAAAAAC
*
7233529 AAAAAAAAGAAGCAAAATGAAG
1 AAAAAAAAGAA--AAAATAAAG
7233551 AAAACAAAAGAAAAAATAAAG
1 AAAA-AAAAGAAAAAATAAAG
7233572 AACAAAAA
1 AA-AAAAA
7233580 TCAAAAAGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 13 0.50
22 6 0.23
23 7 0.27
ACGTcount: A:0.78, C:0.06, G:0.12, T:0.04
Consensus pattern (20 bp):
AAAAAAAAGAAAAAATAAAG
Found at i:7233554 original size:27 final size:27
Alignment explanation
Indices: 7233510--7233564 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
7233500 AGATTCAATC
7233510 AGAACAAAAAGAAAAAAACAAAA-AAA
1 AGAACAAAAAGAAAAAAACAAAAGAAA
* *
7233536 AGAAGCAAAATGAAGAAAACAAAAGAAA
1 AGAA-CAAAAAGAAAAAAACAAAAGAAA
7233564 A
1 A
7233565 AATAAAGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.16
27 17 0.68
28 4 0.16
ACGTcount: A:0.78, C:0.07, G:0.13, T:0.02
Consensus pattern (27 bp):
AGAACAAAAAGAAAAAAACAAAAGAAA
Found at i:7234249 original size:22 final size:22
Alignment explanation
Indices: 7234196--7234250 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
7234186 GCTACCCTAT
*
7234196 CAAACCTTTAAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
7234218 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
7234240 CAAACCTTTGA
1 CAAACCTTTGA
7234251 CCAAACATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.38, C:0.27, G:0.11, T:0.24
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:7237507 original size:106 final size:106
Alignment explanation
Indices: 7234973--7237505 Score: 4037
Period size: 106 Copynumber: 23.9 Consensus size: 106
7234963 TCGAGAGTGG
* * * * *
7234973 AGTTCAACTTTACAACGAAGGGACGGCTGGTTGTCAAAAAATAACTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* *
7235038 TTCAACTTCACGGCGAATGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * *
7235079 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCATAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* * *
7235144 TTTAACTTCACAACGAATGG-TATTGGACTCCAGACAATGCA
66 TTCAACTTCACAGCGAA-GGATATTGGACTCCAGACAACGCA
* *
7235185 AGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGTCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
7235250 TTCAACTTCACAGCGAAGGATATTAGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * *
7235291 AGTTCAACTTCACGACGAAGGGACCGATGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* *
7235356 TTCAACTTCACAACGAAGGATATTGGACTGCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * *
7235397 AGTTCAACTTCACGACGAAGGGACCGATGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* * * *
7235462 TTCATCTTCACAACGAATGATATTGGATTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * *
7235503 AGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAATAAACAATTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* * *
7235568 TTCAACTTCACAACGAAGGATATTGGACTCCAGAAAATGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
7235609 AGTTCAACATCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
7235674 TTTAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * *
7235715 AGTTCAACTTAACGATGAAGGGGCCGATGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
**
7235780 TTCAACTTCACAGTAAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
7235821 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* * *
7235886 TTTAACTTCACAACGAAGGATATTGGACTGCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
7235927 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* * *
7235992 TTCAACTTCAAAGCGAAGGATATTGGACTCCAGAAAATGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * *
7236033 AGTTCAACTTCACGACGAAGGGACTGCTGGTTTTCAATAAACAATTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
7236098 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * * *
7236139 AGTTCAACTTCACGACGAAGGCACAGCTGGTTTTCAATAAACAATTTCCCAATTTCATAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
7236204 TTCAACTTCACAGCGAAGAATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
7236245 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAATTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
7236310 TTCAACTTCACAGCGAAGGATATTGGACTCTAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * *
7236351 AGTTCAACTTCACGACGAAGGGACCGATGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* *
7236416 TTCAACTTCACAACGAAGGATATTGGATTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
7236457 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
7236522 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
7236563 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGATCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
7236628 TTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * **
7236669 AGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTTAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
7236734 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * *
7236775 AGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAATAAATAATTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
7236840 TTCAACTTCACAGCGAAGGATATTGGACTCCAGAAAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
7236881 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAAAAACAATTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
7236946 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
*
7236987 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
7237052 TTCAACTTCACAGCGAAGCATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
7237093 AGTTCAACTTCACGACGAAGGGATCGCTGGTTGTCAATAAACAAATTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
7237158 TTCAACTTCACAGCGAAGGATATTAGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * *
7237199 AGTTCAACTTCACG-CTGAAGGGACCGCTAGTTGTCAATAAACAGCTTCCCAATTTCATAGCCAA
1 AGTTCAACTTCACGAC-GAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAA
7237263 TTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
65 TTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * *
7237305 AGTTCAACTTCATGACGAAGGGACCGTTGGTTGTCAATAAACAATTTTCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* * *
7237370 TTCAACTTCACAGCGAAGGATATTGTACTCGAGACAACACA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * **
7237411 AGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAATAAACAATTTCCC-GGTTCTAGAGCCAA
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTC-AGAGCCAA
* *
7237475 TTTCAACTTCACAACGGAGGATATTGGACTC
65 TTTCAACTTCACAGCGAAGGATATTGGACTC
7237506 GAAACAATGC
Statistics
Matches: 2260, Mismatches: 162, Indels: 10
0.93 0.07 0.00
Matches are distributed among these distances:
105 6 0.00
106 2252 1.00
107 2 0.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (106 bp):
AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
Found at i:7238331 original size:37 final size:37
Alignment explanation
Indices: 7238230--7238333 Score: 136
Period size: 37 Copynumber: 2.8 Consensus size: 37
7238220 CTTTTCGTCT
* * *
7238230 TACTAGGATTCAAACTCCTAAAAATAGAATATAATTT
1 TACTAGGATTCAAACTCCTAAAAATAGGATAGAATTC
* *
7238267 TGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTTC
1 TACTAGGATTCAAACTCCTAAAAATAGGATAGAATTC
* * *
7238304 TACTATGATTTAAACTCCTAAAGATAGGAT
1 TACTAGGATTCAAACTCCTAAAAATAGGAT
7238334 CTACAAGCAC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.31
Consensus pattern (37 bp):
TACTAGGATTCAAACTCCTAAAAATAGGATAGAATTC
Found at i:7243283 original size:15 final size:15
Alignment explanation
Indices: 7243263--7243297 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
7243253 TACAAATTAA
7243263 GAATGTTTTATATGT
1 GAATGTTTTATATGT
7243278 GAATGTTTTATATGT
1 GAATGTTTTATATGT
7243293 GAATG
1 GAATG
7243298 GATTAAAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.49
Consensus pattern (15 bp):
GAATGTTTTATATGT
Found at i:7248110 original size:21 final size:21
Alignment explanation
Indices: 7248068--7248111 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
7248058 ACCTCGGTAG
* *
7248068 CTAGCTCTTCACGAGTTGCTC
1 CTAGCTCTTCACGAGCTCCTC
* *
7248089 CTAGCTCTTCTCGTGCTCCTC
1 CTAGCTCTTCACGAGCTCCTC
7248110 CT
1 CT
7248112 CCTCCTCCGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.09, C:0.39, G:0.16, T:0.36
Consensus pattern (21 bp):
CTAGCTCTTCACGAGCTCCTC
Found at i:7249274 original size:20 final size:20
Alignment explanation
Indices: 7249245--7249286 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
7249235 TTTCAAAGTG
*
7249245 ATGCACCGATGTACCAATTC
1 ATGCACCGATGCACCAATTC
*
7249265 ATGCATCGATGCACCAATTC
1 ATGCACCGATGCACCAATTC
7249285 AT
1 AT
7249287 TTTTCAAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (20 bp):
ATGCACCGATGCACCAATTC
Found at i:7249362 original size:26 final size:26
Alignment explanation
Indices: 7249329--7249394 Score: 132
Period size: 26 Copynumber: 2.5 Consensus size: 26
7249319 TGCACATACC
7249329 ATGCATCGATGCACTCAGTGCATTTG
1 ATGCATCGATGCACTCAGTGCATTTG
7249355 ATGCATCGATGCACTCAGTGCATTTG
1 ATGCATCGATGCACTCAGTGCATTTG
7249381 ATGCATCGATGCAC
1 ATGCATCGATGCAC
7249395 AAGACCATGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (26 bp):
ATGCATCGATGCACTCAGTGCATTTG
Found at i:7268217 original size:18 final size:18
Alignment explanation
Indices: 7268196--7268241 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
7268186 ACGAAAGTAA
7268196 AAAAATAAAG-AAAATGAG
1 AAAAATAAAGAAAAAT-AG
*
7268214 AAAAAAAAAGAAAAATAG
1 AAAAATAAAGAAAAATAG
7268232 ACAAAATAAA
1 A-AAAATAAA
7268242 TAATGAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 12 0.50
19 12 0.50
ACGTcount: A:0.78, C:0.02, G:0.11, T:0.09
Consensus pattern (18 bp):
AAAAATAAAGAAAAATAG
Found at i:7268217 original size:19 final size:19
Alignment explanation
Indices: 7268195--7268241 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
7268185 TACGAAAGTA
7268195 AAAAAATAAAG-AAAATGAG
1 AAAAAATAAAGAAAAAT-AG
7268214 AAAAAA-AAAGAAAAATAG
1 AAAAAATAAAGAAAAATAG
*
7268232 ACAAAATAAA
1 AAAAAATAAA
7268242 TAATGAATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 11 0.44
19 14 0.56
ACGTcount: A:0.79, C:0.02, G:0.11, T:0.09
Consensus pattern (19 bp):
AAAAAATAAAGAAAAATAG
Found at i:7268383 original size:16 final size:17
Alignment explanation
Indices: 7268364--7268404 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
7268354 TAGAATAAAG
*
7268364 AAATAAAAAAATAA-GA
1 AAATAAAAAAATAATAA
*
7268380 AAATAAAAACATAATAA
1 AAATAAAAAAATAATAA
7268397 AAATAAAA
1 AAATAAAA
7268405 CGAAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.15
Consensus pattern (17 bp):
AAATAAAAAAATAATAA
Found at i:7268544 original size:14 final size:16
Alignment explanation
Indices: 7268511--7268544 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
7268501 TAAAATATAC
7268511 ATATATATACACAAAT
1 ATATATATACACAAAT
7268527 ATATATATA-ACGAAAT
1 ATATATATACAC-AAAT
7268543 AT
1 AT
7268545 TAGGGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 15 0.88
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.32
Consensus pattern (16 bp):
ATATATATACACAAAT
Found at i:7280446 original size:10 final size:10
Alignment explanation
Indices: 7280433--7280497 Score: 53
Period size: 10 Copynumber: 6.4 Consensus size: 10
7280423 AAGAAATGAA
7280433 AAAAAATAAT
1 AAAAAATAAT
7280443 AAAAAATAAT
1 AAAAAATAAT
*
7280453 -AAAAGTAA-
1 AAAAAATAAT
7280461 AAATAAATAAAT
1 AAA-AAAT-AAT
* *
7280473 AAAATAGAAT
1 AAAAAATAAT
*
7280483 AAAGAAATAAG
1 AAA-AAATAAT
7280494 AAAA
1 AAAA
7280498 TAAAAACATA
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
9 9 0.21
10 20 0.47
11 11 0.26
12 3 0.07
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (10 bp):
AAAAAATAAT
Found at i:7280456 original size:8 final size:7
Alignment explanation
Indices: 7280426--7280513 Score: 54
Period size: 8 Copynumber: 11.4 Consensus size: 7
7280416 AACTAGAAAG
*
7280426 AAATGAA
1 AAATAAA
7280433 AAA-AAA
1 AAATAAA
*
7280439 TAATAAA
1 AAATAAA
7280446 AAATAATA
1 AAATAA-A
7280454 AAAGT-AA
1 AAA-TAAA
7280461 AAATAAA
1 AAATAAA
7280468 TAAATAAAA
1 -AAAT-AAA
7280477 TAGAATAAA
1 -A-AATAAA
7280486 GAAATAAGA
1 -AAATAA-A
7280495 AAATAAA
1 AAATAAA
7280502 AACATAATA
1 AA-ATAA-A
7280511 AAA
1 AAA
7280514 ATTAAACGAA
Statistics
Matches: 67, Mismatches: 4, Indels: 19
0.74 0.04 0.21
Matches are distributed among these distances:
6 5 0.07
7 20 0.30
8 25 0.37
9 14 0.21
10 3 0.04
ACGTcount: A:0.76, C:0.01, G:0.06, T:0.17
Consensus pattern (7 bp):
AAATAAA
Found at i:7280463 original size:26 final size:24
Alignment explanation
Indices: 7280433--7280502 Score: 61
Period size: 25 Copynumber: 2.8 Consensus size: 24
7280423 AAGAAATGAA
7280433 AAAAAATAATAAAAAATAATAAAAGT
1 AAAAAATAATAAAAAA-AATAAAA-T
* *
7280459 -AAAAATAAATAAATAAAATAGAAT
1 AAAAAAT-AATAAAAAAAATAAAAT
*
7280483 AAAGAAATAAGAAAATAAAA
1 AAA-AAATAATAAAA-AAAA
7280503 ACATAATAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
24 1 0.03
25 19 0.53
26 16 0.44
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (24 bp):
AAAAAATAATAAAAAAAATAAAAT
Found at i:7280639 original size:18 final size:18
Alignment explanation
Indices: 7280616--7280652 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
7280606 ATTAAATAAA
*
7280616 ATATACATATATATATAT
1 ATATACAAATATATATAT
7280634 ATATACAAATATATATAT
1 ATATACAAATATATATAT
7280652 A
1 A
7280653 ACGAAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
ATATACAAATATATATAT
Found at i:7280661 original size:14 final size:16
Alignment explanation
Indices: 7280616--7280661 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
7280606 ATTAAATAAA
7280616 ATATACATATATATATAT
1 ATATACA-A-ATATATAT
7280634 ATATACAAATATATAT
1 ATATACAAATATATAT
7280650 ATA-ACGAAATAT
1 ATATAC-AAATAT
7280662 TTGGGAAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 2 0.07
16 17 0.63
17 1 0.04
18 7 0.26
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (16 bp):
ATATACAAATATATAT
Found at i:7281789 original size:2 final size:2
Alignment explanation
Indices: 7281782--7281816 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
7281772 TAATGAAGAA
7281782 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7281817 GTTTGTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7297327 original size:21 final size:21
Alignment explanation
Indices: 7297303--7297342 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7297293 TTTATTTTAT
7297303 AACTTTATTTCAATTATCGTA
1 AACTTTATTTCAATTATCGTA
*
7297324 AACTTTGTTTCAATTATCG
1 AACTTTATTTCAATTATCG
7297343 AACTTGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.47
Consensus pattern (21 bp):
AACTTTATTTCAATTATCGTA
Found at i:7297390 original size:33 final size:33
Alignment explanation
Indices: 7297337--7297435 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
7297327 TTTGTTTCAA
7297337 TTATCGAACTT-GAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
7297369 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
7297402 TTATCAAACTTGGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
7297435 T
1 T
7297436 ATGTTGAGTT
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 11 0.17
33 52 0.83
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.45
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:7297464 original size:13 final size:13
Alignment explanation
Indices: 7297421--7297475 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
7297411 TTGGAAGTAT
7297421 TTAAGTATTTCAA
1 TTAAGTATTTCAA
* *
7297434 TTATGTTGAGTT-AA
1 TTAAG-T-ATTTCAA
7297448 TTAAGTATTTCAA
1 TTAAGTATTTCAA
*
7297461 TTAAGTATTTGAA
1 TTAAGTATTTCAA
7297474 TT
1 TT
7297476 TATCGAACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (13 bp):
TTAAGTATTTCAA
Found at i:7297697 original size:21 final size:21
Alignment explanation
Indices: 7297671--7297727 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
7297661 TGGAGCGTGG
*
7297671 GGGAATCGGTACCCTCTCATA
1 GGGAATCGGTTCCCTCTCATA
*
7297692 GGGAATCGGTTTCCTCTCATA
1 GGGAATCGGTTCCCTCTCATA
7297713 GGGAATCGGTTCCCT
1 GGGAATCGGTTCCCT
7297728 AAGTGTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.28
Consensus pattern (21 bp):
GGGAATCGGTTCCCTCTCATA
Found at i:7299572 original size:114 final size:113
Alignment explanation
Indices: 7299374--7299586 Score: 313
Period size: 112 Copynumber: 1.9 Consensus size: 113
7299364 ATGACTCCTC
* * *
7299374 TCCTCTTGAACTAAAGGAATCGTTCCTAACACTAGTAAAAAAATATGAGATGCTTTCATCCTAGA
1 TCCTCTTGAACTAAAGGAACCCTTCCTAACACTAGAAAAAAAATATGAGATGCTTTCATCCTAGA
*
7299439 AATAGGATTTTCTCCA-TTTTGATTTACAGAGCATAAAGACGACCCTA
66 AATAGAATTTTCTCCATTTTTGATTTACAGAGCATAAAGACGACCCTA
*
7299486 TCCTCTTGAACTAAAGGAACCCTTCTTAACACTAGGAAAAAAATATATGAGATGCTTTCATCCTA
1 TCCTCTTGAACTAAAGGAACCCTTCCTAACACTA-GAAAAAAA-ATATGAGATGCTTTCATCCTA
* *
7299551 GCAATAGAAATTTT-TCCATTTTTTGATTTATAGAGC
64 GAAATAG-AATTTTCTCCA-TTTTTGATTTACAGAGC
7299587 GTAGAGATGC
Statistics
Matches: 89, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
112 31 0.35
113 7 0.08
114 31 0.35
115 5 0.06
116 15 0.17
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (113 bp):
TCCTCTTGAACTAAAGGAACCCTTCCTAACACTAGAAAAAAAATATGAGATGCTTTCATCCTAGA
AATAGAATTTTCTCCATTTTTGATTTACAGAGCATAAAGACGACCCTA
Found at i:7316797 original size:11 final size:13
Alignment explanation
Indices: 7316769--7316811 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
7316759 ATAAAGATAA
*
7316769 AAAAAACAAAGCA-
1 AAAAAGCAAAG-AG
7316782 AAAAAGCAAA-AG
1 AAAAAGCAAAGAG
7316794 AAAAAGCAAAGAG
1 AAAAAGCAAAGAG
7316807 AAAAA
1 AAAAA
7316812 AAATAAGACA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 1 0.04
12 10 0.37
13 16 0.59
ACGTcount: A:0.77, C:0.09, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAAGCAAAGAG
Found at i:7318944 original size:37 final size:37
Alignment explanation
Indices: 7318894--7319061 Score: 137
Period size: 37 Copynumber: 4.6 Consensus size: 37
7318884 ACAAAGTGTC
*
7318894 ATCTCGCTAGAGACAATTTTTCTTAAAAACAAATTTT
1 ATCTCGCTTGAGACAATTTTTCTTAAAAACAAATTTT
* * * * *
7318931 ACCTTGCTTGAGAC-AGTTTTCTCTAAAAATAATTTTT
1 ATCTCGCTTGAGACAATTTTTCT-TAAAAACAAATTTT
* * * * *
7318968 GTATCGCTTGAGACAGTTTTCTCTAAAAAAC-ATTTTT
1 ATCTCGCTTGAGACAATTTT-TCTTAAAAACAAATTTT
* * * * * *
7319005 GTCTCGCTTGAGATAATTTCTC-TCAAAATAAATTTC
1 ATCTCGCTTGAGACAATTTTTCTTAAAAACAAATTTT
7319041 ATCTCGCTTGAGAC-ATTTTTC
1 ATCTCGCTTGAGACAATTTTTC
7319062 CTTCGAGATG
Statistics
Matches: 101, Mismatches: 26, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
35 10 0.10
36 25 0.25
37 55 0.54
38 8 0.08
39 3 0.03
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.40
Consensus pattern (37 bp):
ATCTCGCTTGAGACAATTTTTCTTAAAAACAAATTTT
Found at i:7319468 original size:67 final size:67
Alignment explanation
Indices: 7319354--7319539 Score: 282
Period size: 67 Copynumber: 2.7 Consensus size: 67
7319344 ATTTGGAAAT
*
7319354 AGTTTCTCTTGAAACAAAAAAAAAACATTGAGATTATTTCCCTTGAAACAAAGTTTAGTCTCTCT
1 AGTTTCTCTTGAAAC----AAAAAACATTGAGATTGTTTCCCTTGAAACAAAGTTTAGTCTCTCT
7319419 TGAGAC
62 TGAGAC
* *
7319425 ATTTTCTCTTGAAACAAAAAACATTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAG
1 AGTTTCTCTTGAAACAAAAAACATTGAGATTGTTTCCCTTGAAACAAAGTTTAGTCTCTCTTGAG
7319490 AC
66 AC
* * *
7319492 AGTTTCTCTTGAAACAAAAATCTTTGAGATTGTTTCCCTCGAAACAAA
1 AGTTTCTCTTGAAACAAAAAACATTGAGATTGTTTCCCTTGAAACAAA
7319540 TTTTGTTTTA
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
67 94 0.87
71 14 0.13
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (67 bp):
AGTTTCTCTTGAAACAAAAAACATTGAGATTGTTTCCCTTGAAACAAAGTTTAGTCTCTCTTGAG
AC
Found at i:7319570 original size:66 final size:67
Alignment explanation
Indices: 7319373--7319571 Score: 251
Period size: 67 Copynumber: 3.0 Consensus size: 67
7319363 TGAAACAAAA
* * * * *
7319373 AAAAAACATTGAGATTATTTCCCTTGAAACAAAGTTTAGTCTCTCTTGAGACATTTTCTCTTGAA
1 AAAAAACATTGAGATTGTTTCCCTCGAAACAAAGTTTTGTCTCTCTTCAGACAATTTCTCTTGAA
7319438 AC
66 AC
* * *
7319440 AAAAAACATTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAA
1 AAAAAACATTGAGATTGTTTCCCTCGAAACAAAGTTTTGTCTCTCTTCAGACAATTTCTCTTGAA
7319505 AC
66 AC
* * * *
7319507 AAAAATCTTTGAGATTGTTTCCCTCGAAACAAA-TTTTGT-TTTACTTTCA-ATAATTTCTCTTG
1 AAAAAACATTGAGATTGTTTCCCTCGAAACAAAGTTTTGTCTCT-C-TTCAGACAATTTCTCTTG
7319569 AAA
64 AAA
7319572 TAAATTATCC
Statistics
Matches: 120, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
65 2 0.02
66 21 0.17
67 97 0.81
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (67 bp):
AAAAAACATTGAGATTGTTTCCCTCGAAACAAAGTTTTGTCTCTCTTCAGACAATTTCTCTTGAA
AC
Found at i:7319828 original size:137 final size:136
Alignment explanation
Indices: 7319575--7319945 Score: 521
Period size: 137 Copynumber: 2.7 Consensus size: 136
7319565 CTTGAAATAA
* * * *
7319575 ATTATCCTTAAAGATGGCCAGATGTCCTCATCACGTAGGAACAATGTCATCTACCGACCGGATCT
1 ATTATCCCTAAAGATGGCCAGACGTCCTCATCACGTAGGAAC-GTGTCATCTACCGACCAGATCT
* * * *
7319640 CCTAATCACGTAGGAGTCGTGTCATCCTTAGATAGCCAGACATCCTTATCGCGTAGGAACCGTGT
65 CCTCATCACGTAAGAGTAGTGTCATCCTTAGATAGCCAGACATCCTCATCGCGTAGGAACCGTGT
7319705 TAT-CTT
130 TATCCTT
* * * *
7319711 CATTATCCCTAAAGATGGCCAGACGTCCTAATCACGTAGGAATCGTGTCATCCACTGATCAGATC
1 -ATTATCCCTAAAGATGGCCAGACGTCCTCATCACGTAGGAA-CGTGTCATCTACCGACCAGATC
* *
7319776 TCCTCATCACATAAGAGCT-GTGTCATCCTTAGATAGCCAGACTTCCTCATCGCGTAGGAACCGT
64 TCCTCATCACGTAAGAG-TAGTGTCATCCTTAGATAGCCAGACATCCTCATCGCGTAGGAACCGT
7319840 GTTATCCTT
128 GTTATCCTT
* * *
7319849 ATTATCCCTAAAGATGGCCAGACGTCCTCATTACATAGGAACCGTGTCATCTACCGACCAGATCC
1 ATTATCCCTAAAGATGGCCAGACGTCCTCATCACGTAGGAA-CGTGTCATCTACCGACCAGATCT
*
7319914 CCTCATCACGTAAGAGTAGTGTCACCCTTAGA
65 CCTCATCACGTAAGAGTAGTGTCATCCTTAGA
7319946 AATGACCAGA
Statistics
Matches: 207, Mismatches: 23, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
136 1 0.00
137 201 0.97
138 5 0.02
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (136 bp):
ATTATCCCTAAAGATGGCCAGACGTCCTCATCACGTAGGAACGTGTCATCTACCGACCAGATCTC
CTCATCACGTAAGAGTAGTGTCATCCTTAGATAGCCAGACATCCTCATCGCGTAGGAACCGTGTT
ATCCTT
Found at i:7325007 original size:20 final size:20
Alignment explanation
Indices: 7324977--7325030 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
7324967 CGATTTTCCG
*
7324977 AATTCGCAATGTGAATATGTA
1 AATT-GCAATGCGAATATGTA
7324998 AATTGCAATGCGAATATGTA
1 AATTGCAATGCGAATATGTA
*
7325018 AATCGCAATGCGA
1 AATTGCAATGCGA
7325031 TTATTACTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 27 0.87
21 4 0.13
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (20 bp):
AATTGCAATGCGAATATGTA
Found at i:7325052 original size:20 final size:20
Alignment explanation
Indices: 7325019--7325172 Score: 164
Period size: 20 Copynumber: 7.7 Consensus size: 20
7325009 GAATATGTAA
* *
7325019 ATCGCAATGCGATTATTACT
1 ATCGCAACGCGATTATGACT
* *
7325039 ATCACAACGCGATTCTGACT
1 ATCGCAACGCGATTATGACT
* *
7325059 ATCGCAACGAGATTCTGACT
1 ATCGCAACGCGATTATGACT
*
7325079 ATCGCAATGCGATTATGACT
1 ATCGCAACGCGATTATGACT
**
7325099 ATCGCAACGCGATGCTGACT
1 ATCGCAACGCGATTATGACT
* * **
7325119 ATCCCAACGTGATGCTGACT
1 ATCGCAACGCGATTATGACT
**
7325139 ATCGCAACGCGATGCTGACT
1 ATCGCAACGCGATTATGACT
*
7325159 ATCGCAATGCGATT
1 ATCGCAACGCGATT
7325173 TTCAAAGTGC
Statistics
Matches: 116, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 116 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (20 bp):
ATCGCAACGCGATTATGACT
Found at i:7325063 original size:40 final size:40
Alignment explanation
Indices: 7325019--7325172 Score: 182
Period size: 40 Copynumber: 3.9 Consensus size: 40
7325009 GAATATGTAA
* * *
7325019 ATCGCAATGCGATTATTACTATCACAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACTATCACAACGCGATTCTGACT
* * * *
7325059 ATCGCAACGAGATTCTGACTATCGCAATGCGATTATGACT
1 ATCGCAACGCGATTCTGACTATCACAACGCGATTCTGACT
* * * *
7325099 ATCGCAACGCGATGCTGACTATCCCAACGTGATGCTGACT
1 ATCGCAACGCGATTCTGACTATCACAACGCGATTCTGACT
* * *
7325139 ATCGCAACGCGATGCTGACTATCGCAATGCGATT
1 ATCGCAACGCGATTCTGACTATCACAACGCGATT
7325173 TTCAAAGTGC
Statistics
Matches: 96, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 96 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (40 bp):
ATCGCAACGCGATTCTGACTATCACAACGCGATTCTGACT
Found at i:7325091 original size:60 final size:60
Alignment explanation
Indices: 7325019--7325171 Score: 207
Period size: 60 Copynumber: 2.5 Consensus size: 60
7325009 GAATATGTAA
* * * *
7325019 ATCGCAATGCGATTATTACTATCACAACGCGATTCTGACTATCGCAACGAGATTCTGACT
1 ATCGCAATGCGATTATGACTATCACAACGCGATGCTGACTATCCCAACGAGATGCTGACT
* *
7325079 ATCGCAATGCGATTATGACTATCGCAACGCGATGCTGACTATCCCAACGTGATGCTGACT
1 ATCGCAATGCGATTATGACTATCACAACGCGATGCTGACTATCCCAACGAGATGCTGACT
* ** * *
7325139 ATCGCAACGCGATGCTGACTATCGCAATGCGAT
1 ATCGCAATGCGATTATGACTATCACAACGCGAT
7325172 TTTCAAAGTG
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 83 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (60 bp):
ATCGCAATGCGATTATGACTATCACAACGCGATGCTGACTATCCCAACGAGATGCTGACT
Found at i:7325389 original size:22 final size:21
Alignment explanation
Indices: 7325340--7325391 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
7325330 ACTCTCTAAG
* *
7325340 GCGACATCCGTCCCCATATCC
1 GCGAAATCAGTCCCCATATCC
*
7325361 GATGAAATCAGTCCCCATATCC
1 G-CGAAATCAGTCCCCATATCC
7325383 TGCGAAATC
1 -GCGAAATC
7325392 CGCCTATCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 1 0.04
22 23 0.92
23 1 0.04
ACGTcount: A:0.27, C:0.37, G:0.15, T:0.21
Consensus pattern (21 bp):
GCGAAATCAGTCCCCATATCC
Found at i:7325849 original size:20 final size:20
Alignment explanation
Indices: 7325776--7325849 Score: 71
Period size: 19 Copynumber: 3.8 Consensus size: 20
7325766 AGAATCGCAA
7325776 TGCGATTTT-AGTTTCGCGT
1 TGCGATTTTCAGTTTCGCGT
* *
7325795 TGTGATTTTCA-TTTCGCAT
1 TGCGATTTTCAGTTTCGCGT
** * *
7325814 TGCGATAGTCATTTTCGTGT
1 TGCGATTTTCAGTTTCGCGT
*
7325834 TGCGATTTTAAGTTTC
1 TGCGATTTTCAGTTTC
7325850 AGAAACTATT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
19 23 0.55
20 19 0.45
ACGTcount: A:0.15, C:0.15, G:0.22, T:0.49
Consensus pattern (20 bp):
TGCGATTTTCAGTTTCGCGT
Found at i:7327782 original size:20 final size:20
Alignment explanation
Indices: 7327732--7327784 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
7327722 TAGTTTACTT
*
7327732 TCGCAATGCAAAAATGACTA
1 TCGCAATGCGAAAATGACTA
* **
7327752 TCGCAACGCGAATTTGACTA
1 TCGCAATGCGAAAATGACTA
7327772 TCGCAATGCGAAA
1 TCGCAATGCGAAA
7327785 TGAAAATCAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAAAATGACTA
Found at i:7327833 original size:20 final size:20
Alignment explanation
Indices: 7327808--7327894 Score: 115
Period size: 20 Copynumber: 4.5 Consensus size: 20
7327798 GCGATTCTCT
7327808 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
7327828 CGTTGCTATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
* **
7327848 CGTTGCAATAGTCATTTTCG
1 CGTTGCGATAGTCAAATTCG
7327868 CGTTGCGATAGTC--ATTCG
1 CGTTGCGATAGTCAAATTCG
*
7327886 TGTTGCGAT
1 CGTTGCGAT
7327895 TTTAAGTTTC
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
18 12 0.20
20 48 0.80
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.36
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCG
Found at i:7329873 original size:14 final size:14
Alignment explanation
Indices: 7329854--7329892 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
7329844 TTGCTTGTTT
7329854 AATTGATTTGTAAA
1 AATTGATTTGTAAA
7329868 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
7329882 AGTTGATTTGT
1 AATTGATTTGT
7329893 TTAATATTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:7329910 original size:29 final size:28
Alignment explanation
Indices: 7329856--7329910 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 28
7329846 GCTTGTTTAA
* *
7329856 TTGATTTGTAAAAATTGATTTGTAAAAG
1 TTGATTTGTAAAAATTGATGTATAAAAG
* *
7329884 TTGATTTGTTTAATATTGATGTATAAA
1 TTGATTTG-TAAAAATTGATGTATAAA
7329911 TAATTCTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 8 0.36
29 14 0.64
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.47
Consensus pattern (28 bp):
TTGATTTGTAAAAATTGATGTATAAAAG
Found at i:7330135 original size:20 final size:20
Alignment explanation
Indices: 7330110--7330294 Score: 115
Period size: 20 Copynumber: 9.8 Consensus size: 20
7330100 GCGATTTTCT
* * * *
7330110 CGTTGCAATAGTCGAATACC
1 CGTTGCGATAGTCAAATTCA
*
7330130 CGTTGCGATAATCAAATTCA
1 CGTTGCGATAGTCAAATTCA
*
7330150 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCA
*
7330170 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCA
* **
7330190 CATTGCGAT--T----TTTT
1 CGTTGCGATAGTCAAATTCA
* *
7330204 CGTTGTGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCA
* *
7330224 CGTTGCGAT--T---TTTGA
1 CGTTGCGATAGTCAAATTCA
* *
7330239 -GTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATTCA
* *
7330258 CGTTGTGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCA
*
7330278 CGTTGCGATATTCAAAT
1 CGTTGCGATAGTCAAAT
7330295 GAATGTGTAA
Statistics
Matches: 128, Mismatches: 25, Indels: 24
0.72 0.14 0.14
Matches are distributed among these distances:
14 17 0.13
15 2 0.02
16 2 0.02
18 2 0.02
19 2 0.02
20 103 0.80
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCA
Found at i:7330259 original size:34 final size:34
Alignment explanation
Indices: 7330171--7330262 Score: 139
Period size: 34 Copynumber: 2.7 Consensus size: 34
7330161 TCAAATTCGC
* **
7330171 GTTGCGATAGTCAAATTCGCATTGCGATTTTTTC
1 GTTGCGATAGTCAAATTCGCGTTGCGATTTTTGA
*
7330205 GTTGTGATAGTCAAATTCGCGTTGCGATTTTTGA
1 GTTGCGATAGTCAAATTCGCGTTGCGATTTTTGA
*
7330239 GTTGCGATAATCAAATTCGCGTTG
1 GTTGCGATAGTCAAATTCGCGTTG
7330263 TGATAGTCAA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 52 1.00
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (34 bp):
GTTGCGATAGTCAAATTCGCGTTGCGATTTTTGA
Found at i:7332829 original size:24 final size:24
Alignment explanation
Indices: 7332778--7332829 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
7332768 ATCCGAGTAT
** *
7332778 TGACCAAGATCAAAGTCTGGGTAT
1 TGACCAAGATCAAAGTCTGAATAC
* *
7332802 TGACCAAGATCAAATTTTGAATAC
1 TGACCAAGATCAAAGTCTGAATAC
7332826 TGAC
1 TGAC
7332830 TAGTACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCTGAATAC
Found at i:7333676 original size:20 final size:20
Alignment explanation
Indices: 7333651--7333748 Score: 106
Period size: 20 Copynumber: 4.9 Consensus size: 20
7333641 AGTCAGAAAG
**
7333651 TCAGAATCTTGTTGCGATAA
1 TCAGAATCACGTTGCGATAA
7333671 TCAGAATCACGTTGCGATAA
1 TCAGAATCACGTTGCGATAA
* *
7333691 TCAGAATCGCGTTGCGATAG
1 TCAGAATCACGTTGCGATAA
* * *
7333711 TCAGAATCGCATTGCGATAG
1 TCAGAATCACGTTGCGATAA
* * *
7333731 TCATAATCGCATTGCGAT
1 TCAGAATCACGTTGCGAT
7333749 TTACATATTT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 72 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (20 bp):
TCAGAATCACGTTGCGATAA
Found at i:7333706 original size:40 final size:40
Alignment explanation
Indices: 7333651--7333748 Score: 124
Period size: 40 Copynumber: 2.5 Consensus size: 40
7333641 AGTCAGAAAG
** *
7333651 TCAGAATCTTGTTGCGATAATCAGAATCACGTTGCGATAA
1 TCAGAATCGCGTTGCGATAATCAGAATCACATTGCGATAA
* * *
7333691 TCAGAATCGCGTTGCGATAGTCAGAATCGCATTGCGATAG
1 TCAGAATCGCGTTGCGATAATCAGAATCACATTGCGATAA
* *
7333731 TCATAATCGCATTGCGAT
1 TCAGAATCGCGTTGCGAT
7333749 TTACATATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (40 bp):
TCAGAATCGCGTTGCGATAATCAGAATCACATTGCGATAA
Found at i:7333755 original size:20 final size:20
Alignment explanation
Indices: 7333715--7333792 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
7333705 CGATAGTCAG
*
7333715 AATCGCATTGCGATAGT-CAT
1 AATCGCATTGCGAT-TTACAT
7333735 AATCGCATTGCGATTTACAT
1 AATCGCATTGCGATTTACAT
* *
7333755 ATTTGCATTGCGATTTACAT
1 AATCGCATTGCGATTTACAT
* *
7333775 ATTCGCATTGTGATTTAC
1 AATCGCATTGCGATTTAC
7333793 TCGCATTGCG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
19 1 0.02
20 51 0.98
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (20 bp):
AATCGCATTGCGATTTACAT
Found at i:7333824 original size:21 final size:21
Alignment explanation
Indices: 7333800--7333875 Score: 107
Period size: 21 Copynumber: 3.6 Consensus size: 21
7333790 TACTCGCATT
7333800 GCGAATTCAGAAAATCGCAAC
1 GCGAATTCAGAAAATCGCAAC
7333821 GCGAATTCAGAAAATCGCAAC
1 GCGAATTCAGAAAATCGCAAC
** *
7333842 GCGAATTTGGAAAATCGCAAT
1 GCGAATTCAGAAAATCGCAAC
*
7333863 GCGATAGTCAGAA
1 GCGA-ATTCAGAA
7333876 TCGCGTTGCG
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
21 43 0.90
22 5 0.10
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.17
Consensus pattern (21 bp):
GCGAATTCAGAAAATCGCAAC
Found at i:7338048 original size:21 final size:21
Alignment explanation
Indices: 7338024--7338068 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
7338014 TTAGTTGATT
*
7338024 AAAATATTTTTAAAG-TATTTA
1 AAAATATTTTCAAAGCT-TTTA
*
7338045 AAAATGTTTTCAAAGCTTTTA
1 AAAATATTTTCAAAGCTTTTA
7338066 AAA
1 AAA
7338069 CATAAAACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (21 bp):
AAAATATTTTCAAAGCTTTTA
Found at i:7346683 original size:3 final size:3
Alignment explanation
Indices: 7346675--7346752 Score: 111
Period size: 3 Copynumber: 26.0 Consensus size: 3
7346665 TTAATATATT
* * *
7346675 TAA TAA TAA TAA TAA TAA TAA TAA TAT TTA TAA TAA TTA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
7346723 TAA TAA TTA TTA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7346753 ATCAATATGG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:7347106 original size:17 final size:17
Alignment explanation
Indices: 7347084--7347139 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
7347074 TTGAACAAGC
7347084 TCTTCTTATTATGAACT
1 TCTTCTTATTATGAACT
* *
7347101 TCTTCTTCTTCA-GATGAGT
1 TCTTCTTATT-ATGA--ACT
*
7347120 TCTTCTCATTATGAACT
1 TCTTCTTATTATGAACT
7347137 TCT
1 TCT
7347140 CTGGAAAAGC
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
17 16 0.53
18 2 0.07
19 12 0.40
ACGTcount: A:0.20, C:0.21, G:0.09, T:0.50
Consensus pattern (17 bp):
TCTTCTTATTATGAACT
Found at i:7347396 original size:225 final size:221
Alignment explanation
Indices: 7347067--7347822 Score: 740
Period size: 200 Copynumber: 3.5 Consensus size: 221
7347057 TAGAATTATG
* *
7347067 CAAAAAGTTGAACAAGCTCTTCTTATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTAT
1 CAAAAGGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTAT
* *
7347132 GAACTTCTCTGGAAAAGCTGCTCCATCAAGTGATGGATTTGAGCAAAATG-TTGAACAAATTCTT
66 GAACTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAA-GATTGAACAAATTCTT
* *
7347196 CTCATTATGAATTTCTTCTTC-TTC-AGATGACGAGTTCTTCTCATTATGAACTCTAC-CTGGCA
130 CTCATTATGAATTTCTTCTTCTTTCTACA-GACGAGTTCTTCTCATTATGAACT-TACTCTGGAA
* *
7347258 ATGTTAATCCATCAAATGATGAATTTAAA
193 AAGCTAATCCATCAAATGATGAATTTAAA
*
7347287 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAGTTCTTCTTATTATGAA---CTTCTT-CTTCTTCAGATGAGTTCTTCTCA
7347352 TTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAAT
62 TTATGAAC-TTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAAT
* * *
7347417 TCTTCTCATTATGAATTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
126 TCTTCTCATTATGAATTTCTTCTTCTTTCTACAGACGAGTTCTTCTCATTATGAACTTACTCTGG
* * *
7347482 AAAAGCTGATCCATCAAATGATGGATTTGAA
191 AAAAGCTAATCCATCAAATGATGAATTTAAA
* * * *
7347513 CAAAAGGGTTAAACAAGTTC-T-TTA-GATG-AGTTCTTC-TCATT---ATGA--AC-TCTC-TT
1 CAAAA-GGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTC-TTCAGATGAGTTCTTCTCATT
* * * * ** * * * *
7347566 -TG----GCGCT------GTTGATCCATCAAATGATGAATTCAAGCAAAGGGTTAAACAAGTTCT
64 ATGAACTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCT
* * * * * * *
7347620 TCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGCAA
129 TCTCATTATGAATTTCTTCTTCTTTCTACAGACGAGTTCTTCTCATTATGAACTTACTCTGGAAA
* * * *
7347685 AGCTAATCCATCAAGTGATGGATTTGAG
194 AGCTAATCCATCAAATGATGAATTTAAA
* * *
7347713 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAGTTCTTCTTATTATGAA---CTTCTT-CTTCTTCAGATGAGTTCTTCTCA
* * ** *
7347778 TTATGAAC-TCGAACTGGAAAAGTTGATCCATTGAATGATGAATTT
62 TTATGAACTTC--TCTGGAAAAGCTGATCCATCAAATGATGGATTT
7347823 AAATCTTTGC
Statistics
Matches: 449, Mismatches: 48, Indels: 72
0.79 0.08 0.13
Matches are distributed among these distances:
199 12 0.03
200 131 0.29
201 2 0.00
202 3 0.01
203 1 0.00
206 8 0.02
207 3 0.01
208 2 0.00
210 4 0.01
211 2 0.00
212 3 0.01
213 8 0.02
214 3 0.01
215 2 0.00
216 4 0.01
218 3 0.01
219 3 0.01
220 36 0.08
223 7 0.02
224 35 0.08
225 82 0.18
226 82 0.18
227 13 0.03
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.37
Consensus pattern (221 bp):
CAAAAGGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTAT
GAACTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTC
TCATTATGAATTTCTTCTTCTTTCTACAGACGAGTTCTTCTCATTATGAACTTACTCTGGAAAAG
CTAATCCATCAAATGATGAATTTAAA
Found at i:7347404 original size:113 final size:110
Alignment explanation
Indices: 7347066--7347822 Score: 634
Period size: 113 Copynumber: 7.0 Consensus size: 110
7347056 ATAGAATTAT
* ** *
7347066 GCAAAAAGTTGAACAAGCTCTTCTTATTATGAA-CTTCTTCTTCTTCAGATGAGTTCTTCTCATT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATCTTCTTCTTCTTCAGATGAGTTCTTCTCATT
* *
7347130 ATGAAC-TTCTCTGGAAAAGCTGCTCCATCAAGTGATGGATTTGA
66 ATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
*
7347174 GCAAAATGTTGAACAAATTCTTCTCATTATGAAT-TTCTTCTTCTTCAGATGACGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATCTTCTTCTTCTTCAGAT---GAGTTCTTCTC
* * * * * * *
7347238 ATTATGAACTCTAC-CTGGCAATGTTAATCCATCAAATGATGAATTTAA
63 ATTATGAACT-TTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
* *
7347286 ACAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA--TCTTCTT-CTTCTTCAGATGAGTTCTTCTC
7347351 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
63 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
*
7347399 GCAAAAGATTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA--TCTTCTTC-TTCTTCAGATGAGTTCTTCTC
7347464 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
63 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
* * * * * *
7347512 ACAAAAGGGTTAAACAAGTTCTT-T-A-GATG-A-GTTCTTC-TCATT---ATGA--AC-TCTC-
1 GCAAAA-GGTTGAACAAATTCTTCTCATTATGAATCTTCTTCTTC-TTCAGATGAGTTCTTCTCA
** * * * * * *
7347564 TT-TGGCGCTGTTGATCCAT-CAAATGATGAATTCAAGCAAA-G--GG--TT-A
64 TTAT-GAACT-TT-CT-C-TGGAAAAGCTG-A-TCCATCAAATGATGGATTTGA
7347610 --AACAA-GTT---C---TTC-T-T-ATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 GCAA-AAGGTTGAACAAATTCTTCTCATTATGAA--TCTTCTT-CTTCTTCAGATGAGTTCTTCT
* * *
7347663 CATTATGAACTTTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGA
62 CATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
*
7347712 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAAATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA--TCTTCTT-CTTCTTCAGATGAGTTCTTCTC
**** * ** *
7347777 ATTATGAACTCGAACTGGAAAAGTTGATCCATTGAATGATGAATTT
63 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTT
7347823 AAATCTTTGC
Statistics
Matches: 524, Mismatches: 69, Indels: 107
0.75 0.10 0.15
Matches are distributed among these distances:
88 3 0.01
89 6 0.01
90 1 0.00
92 1 0.00
93 5 0.01
94 3 0.01
95 5 0.01
96 8 0.02
97 9 0.02
98 7 0.01
99 11 0.02
100 12 0.02
101 11 0.02
102 9 0.02
103 9 0.02
104 12 0.02
105 2 0.00
106 2 0.00
107 7 0.01
108 45 0.09
110 4 0.01
111 24 0.05
112 61 0.12
113 237 0.45
114 14 0.03
115 5 0.01
116 11 0.02
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.37
Consensus pattern (110 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAATCTTCTTCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
Done.