Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10629029
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 36 of 51
Found at i:7347589 original size:87 final size:86
Alignment explanation
Indices: 7347443--7347621 Score: 243
Period size: 87 Copynumber: 2.1 Consensus size: 86
7347433 TTCTTCTTCT
* *
7347443 TTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGAT-GAA
*
7347508 TTGAA-CAAAAGGGTTAAACAAG
65 TTCAAGC-AAAGGGTTAAACAAG
* * **** *
7347530 TTCTTTAGATGAGTTCTTCTCATTATGAACTCTCTTTGGCGCTGTTGATCCATCAAATGATGAAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAAT
7347595 TCAAGCAAAGGGTTAAACAAG
66 TCAAGCAAAGGGTTAAACAAG
7347616 TTCTTC
1 TTCTTC
7347622 TTATTATGAA
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
86 26 0.32
87 54 0.68
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (86 bp):
TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAAT
TCAAGCAAAGGGTTAAACAAG
Found at i:7347671 original size:313 final size:313
Alignment explanation
Indices: 7347227--7347822 Score: 969
Period size: 313 Copynumber: 1.9 Consensus size: 313
7347217 TTCAGATGAC
*
7347227 GAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTAATCCATCAAATGATGAATTTAAACAAAA
1 GAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTAATCCATCAAATGATGAATTCAAACAAAA
*
7347292 GGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
66 GGTTAAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
*
7347357 AACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTC
131 AACTTTCTCTGGAAAAGCTAATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTC
* * ****
7347422 TCATTATGAATTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAG
196 TCATTATGAATTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAG
*
7347487 CTGATCCATCAAATGATGGATTTGAACAAAAGGGTTAAACAAGTTCTTTAGAT
261 CTGATCCATCAAATGATGAATTTGAACAAAAGGGTTAAACAAGTTCTTTAGAT
* ** * *
7347540 GAGTTCTTCTCATTATGAACTCT-CTTTGGCGCTGTTGATCCATCAAATGATGAATTCAAGCAAA
1 GAGTTCTTCTCATTATGAACTCTAC-CTGGCAATGTTAATCCATCAAATGATGAATTCAAACAAA
* *
7347604 GGGTTAAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAT
65 AGGTTAAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAT
* * *
7347669 GAACTTTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTT
130 GAACTTTCTCTGGAAAAGCTAATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTT
7347734 CTCATTATGAATTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
195 CTCATTATGAATTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
* **
7347799 GTTGATCCATTGAATGATGAATTT
260 GCTGATCCATCAAATGATGAATTT
7347823 AAATCTTTGC
Statistics
Matches: 259, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
312 1 0.00
313 258 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (313 bp):
GAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTAATCCATCAAATGATGAATTCAAACAAAA
GGTTAAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
AACTTTCTCTGGAAAAGCTAATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTC
TCATTATGAATTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAG
CTGATCCATCAAATGATGAATTTGAACAAAAGGGTTAAACAAGTTCTTTAGAT
Found at i:7348804 original size:83 final size:83
Alignment explanation
Indices: 7348665--7349222 Score: 990
Period size: 83 Copynumber: 6.7 Consensus size: 83
7348655 GGTTTCATAT
7348665 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCCCATTCCTCTTCCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCCCATTCCTCTTCCAAA
7348730 TTCAATGATTGGTTTTAC
66 TTCAATGATTGGTTTTAC
7348748 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCCCATTCCTCTTCCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCCCATTCCTCTTCCAAA
7348813 TTCAATGATTGGTTTTAC
66 TTCAATGATTGGTTTTAC
7348831 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCCCATTCCTCTTCCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCCCATTCCTCTTCCAAA
7348896 TTCAATGATTGGTTTTAC
66 TTCAATGATTGGTTTTAC
*
7348914 CAAACCAGACCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCCCATTCCTCTTCCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCCCATTCCTCTTCCAAA
*
7348979 TTCAATGATTAGTTTTAC
66 TTCAATGATTGGTTTTAC
* * * * * **
7348997 CAAACCAGATCAAATAACTCAAAGGACACTACCAGAAGATGCTATGAGCACATTATTCTTCCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCCCATTCCTCTTCCAAA
7349062 TTCAATGATTGGTTTTAC
66 TTCAATGATTGGTTTTAC
7349080 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCCCATTCCTCTTCCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCCCATTCCTCTTCCAAA
*
7349145 TTCAATGATTAGTTTTAC
66 TTCAATGATTGGTTTTAC
* * * *
7349163 CAAACCAGATCAGATAACTCAAAGGACACTTCCAGAAGATGCTATGAGCACATTCATCTT
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCCCATTCCTCTT
7349223 TTCAGCTAAT
Statistics
Matches: 452, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 452 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (83 bp):
CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCCCATTCCTCTTCCAAA
TTCAATGATTGGTTTTAC
Found at i:7354489 original size:15 final size:15
Alignment explanation
Indices: 7354466--7354497 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7354456 TGAAATGAAT
7354466 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
7354481 AATGCATGTATGCAA
1 AATGAATGTATGCAA
7354496 AA
1 AA
7354498 AGGTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:7357268 original size:9 final size:9
Alignment explanation
Indices: 7357254--7357278 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7357244 TAAACATGCT
7357254 TTTAAATAA
1 TTTAAATAA
7357263 TTTAAATAA
1 TTTAAATAA
7357272 TTTAAAT
1 TTTAAAT
7357279 TTACATGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
TTTAAATAA
Found at i:7357802 original size:29 final size:27
Alignment explanation
Indices: 7357748--7357833 Score: 75
Period size: 29 Copynumber: 3.1 Consensus size: 27
7357738 CTCTGACAGA
* *
7357748 AAAATAAATAATAAAATATTTGTAAAT
1 AAAATAAATAATAAAATATATATAAAT
*
7357775 AAAATGAAATATTAATAATATATATAAAT
1 AAAAT-AAATAATAA-AATATATATAAAT
** * * *
7357804 ACTATAAA-AATAATATGTATATATAT
1 AAAATAAATAATAAAATATATATAAAT
7357830 AAAA
1 AAAA
7357834 GAATTATAAA
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
26 12 0.26
27 9 0.20
28 11 0.24
29 14 0.30
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (27 bp):
AAAATAAATAATAAAATATATATAAAT
Found at i:7359894 original size:3 final size:3
Alignment explanation
Indices: 7359886--7359960 Score: 114
Period size: 3 Copynumber: 25.0 Consensus size: 3
7359876 TTAATATATT
* * * *
7359886 TAA TAA TAA TAA TAA TAA TAT TTA TAA TAA TTA TAA TAA TAA TAA TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7359934 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
7359961 ATCAATATGG
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:7359904 original size:24 final size:25
Alignment explanation
Indices: 7359877--7359953 Score: 124
Period size: 24 Copynumber: 3.2 Consensus size: 25
7359867 TATATATATT
7359877 TAATATATT-TAATAATAATAATAA
1 TAATATATTATAATAATAATAATAA
*
7359901 TAATAT-TTATAATAATTATAATAA
1 TAATATATTATAATAATAATAATAA
7359925 TAATA-ATTATAATAATAATAATAA
1 TAATATATTATAATAATAATAATAA
7359949 TAATA
1 TAATA
7359954 ATAATAAATC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
23 2 0.04
24 47 0.96
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
TAATATATTATAATAATAATAATAA
Found at i:7360315 original size:17 final size:17
Alignment explanation
Indices: 7360293--7360348 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
7360283 TTGAACAAGC
7360293 TCTTCTTATTATGAACT
1 TCTTCTTATTATGAACT
* *
7360310 TCTTCTTCTTCA-GATGAGT
1 TCTTCTTATT-ATGA--ACT
*
7360329 TCTTCTCATTATGAACT
1 TCTTCTTATTATGAACT
7360346 TCT
1 TCT
7360349 CTGGAAAAGC
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
17 16 0.53
18 2 0.07
19 12 0.40
ACGTcount: A:0.20, C:0.21, G:0.09, T:0.50
Consensus pattern (17 bp):
TCTTCTTATTATGAACT
Found at i:7360606 original size:225 final size:221
Alignment explanation
Indices: 7360276--7361031 Score: 756
Period size: 200 Copynumber: 3.5 Consensus size: 221
7360266 TAGAATTATG
* *
7360276 CAAAAAGTTGAACAAGCTCTTCTTATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTAT
1 CAAAAGGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTAT
* * *
7360341 GAACTTCTCTGGAAAAGCTGCTCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTC
66 GAACTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTC
* *
7360406 TCATTATGAATTTCTTCTTC-TTC-AGATGACGAGTTCTTCTCATTATGAACTCTAC-CTGGCAA
131 TCATTATGAATTTCTTCTTCTTTCTACA-GACGAGTTCTTCTCATTATGAACT-TACTCTGGAAA
*
7360468 TGTTAATCCATCAAATGATGAATTTAAA
194 AGTTAATCCATCAAATGATGAATTTAAA
*
7360496 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAGTTCTTCTTATTATGAA---CTTCTT-CTTCTTCAGATGAGTTCTTCTCA
7360561 TTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAAT
62 TTATGAAC-TTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAAT
* * *
7360626 TCTTCTCATTATGAATTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
126 TCTTCTCATTATGAATTTCTTCTTCTTTCTACAGACGAGTTCTTCTCATTATGAACTTACTCTGG
* * *
7360691 AAAAGTTGATCCATCAAATGATGGATTTGAA
191 AAAAGTTAATCCATCAAATGATGAATTTAAA
* * * *
7360722 CAAAAGGGTTAAACAAGTTC-T-TTA-GATG-AGTTCTTC-TCATT---ATGA--AC-TCTC-TT
1 CAAAA-GGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTC-TTCAGATGAGTTCTTCTCATT
* * * ** * * * *
7360775 -TG----GCGCT------GCTGATCCATCAAATGATGAATTCAAGCAAAGGGTTAAACAAGTTCT
64 ATGAACTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCT
* * * * * * *
7360829 TCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGCAA
129 TCTCATTATGAATTTCTTCTTCTTTCTACAGACGAGTTCTTCTCATTATGAACTTACTCTGGAAA
* * * * *
7360894 AGCTAATCCATCAAGTGATGGATTTGAG
194 AGTTAATCCATCAAATGATGAATTTAAA
* * *
7360922 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAGTTCTTCTTATTATGAA---CTTCTT-CTTCTTCAGATGAGTTCTTCTCA
* * ** *
7360987 TTATGAAC-TCGAACTGGAAAAGTTGATCCATTGAATGATGAATTT
62 TTATGAACTTC--TCTGGAAAAGCTGATCCATCAAATGATGGATTT
7361032 AAATCTTTGC
Statistics
Matches: 449, Mismatches: 49, Indels: 70
0.79 0.09 0.12
Matches are distributed among these distances:
199 12 0.03
200 131 0.29
201 2 0.00
202 3 0.01
203 1 0.00
206 8 0.02
207 3 0.01
208 2 0.00
210 4 0.01
211 2 0.00
212 3 0.01
213 8 0.02
214 3 0.01
215 2 0.00
216 4 0.01
218 3 0.01
219 3 0.01
220 36 0.08
223 7 0.02
224 34 0.08
225 83 0.18
226 82 0.18
227 13 0.03
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.37
Consensus pattern (221 bp):
CAAAAGGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTAT
GAACTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTC
TCATTATGAATTTCTTCTTCTTTCTACAGACGAGTTCTTCTCATTATGAACTTACTCTGGAAAAG
TTAATCCATCAAATGATGAATTTAAA
Found at i:7360613 original size:113 final size:110
Alignment explanation
Indices: 7360275--7360743 Score: 631
Period size: 113 Copynumber: 4.2 Consensus size: 110
7360265 ATAGAATTAT
* ** *
7360275 GCAAAAAGTTGAACAAGCTCTTCTTATTATGAA-CTTCTTCTTCTTCAGATGAGTTCTTCTCATT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATCTTCTTCTTCTTCAGATGAGTTCTTCTCATT
* *
7360339 ATGAAC-TTCTCTGGAAAAGCTGCTCCATCAAGTGATGGATTTGA
66 ATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
7360383 GCAAAAGGTTGAACAAATTCTTCTCATTATGAAT-TTCTTCTTCTTCAGATGACGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATCTTCTTCTTCTTCAGAT---GAGTTCTTCTC
* * * * * * *
7360447 ATTATGAACTCTAC-CTGGCAATGTTAATCCATCAAATGATGAATTTAA
63 ATTATGAACT-TTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
* *
7360495 ACAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA--TCTTCTT-CTTCTTCAGATGAGTTCTTCTC
7360560 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
63 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
*
7360608 GCAAAAGATTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA--TCTTCTTC-TTCTTCAGATGAGTTCTTCTC
*
7360673 ATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAATGATGGATTTGA
63 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
* * *
7360721 ACAAAAGGGTTAAACAAGTTCTT
1 GCAAAA-GGTTGAACAAATTCTT
7360744 TAGATGAGTT
Statistics
Matches: 317, Mismatches: 31, Indels: 20
0.86 0.08 0.05
Matches are distributed among these distances:
108 45 0.14
111 20 0.06
112 60 0.19
113 162 0.51
114 14 0.04
115 5 0.02
116 11 0.03
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (110 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAATCTTCTTCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
Found at i:7360798 original size:87 final size:86
Alignment explanation
Indices: 7360652--7360830 Score: 243
Period size: 87 Copynumber: 2.1 Consensus size: 86
7360642 TTCTTCTTCT
* * *
7360652 TTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAATGATGGAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGAT-GAA
*
7360717 TTGAA-CAAAAGGGTTAAACAAG
65 TTCAAGC-AAAGGGTTAAACAAG
* * ****
7360739 TTCTTTAGATGAGTTCTTCTCATTATGAACTCTCTTTGGCGCTGCTGATCCATCAAATGATGAAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAAT
7360804 TCAAGCAAAGGGTTAAACAAG
66 TCAAGCAAAGGGTTAAACAAG
7360825 TTCTTC
1 TTCTTC
7360831 TTATTATGAA
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
86 26 0.32
87 54 0.68
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (86 bp):
TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAAT
TCAAGCAAAGGGTTAAACAAG
Found at i:7360880 original size:313 final size:313
Alignment explanation
Indices: 7360436--7361031 Score: 969
Period size: 313 Copynumber: 1.9 Consensus size: 313
7360426 TTCAGATGAC
* *
7360436 GAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTAATCCATCAAATGATGAATTTAAACAAAA
1 GAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCAAATGATGAATTCAAACAAAA
*
7360501 GGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
66 GGTTAAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
*
7360566 AACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTC
131 AACTTTCTCTGGAAAAGCTAATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTC
* * ****
7360631 TCATTATGAATTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAG
196 TCATTATGAATTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAG
*
7360696 TTGATCCATCAAATGATGGATTTGAACAAAAGGGTTAAACAAGTTCTTTAGAT
261 TTGATCCATCAAATGATGAATTTGAACAAAAGGGTTAAACAAGTTCTTTAGAT
* ** * *
7360749 GAGTTCTTCTCATTATGAACTCT-CTTTGGCGCTGCTGATCCATCAAATGATGAATTCAAGCAAA
1 GAGTTCTTCTCATTATGAACTCTAC-CTGGCAATGCTAATCCATCAAATGATGAATTCAAACAAA
* *
7360813 GGGTTAAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAT
65 AGGTTAAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAT
* * *
7360878 GAACTTTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTT
130 GAACTTTCTCTGGAAAAGCTAATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTT
7360943 CTCATTATGAATTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
195 CTCATTATGAATTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
**
7361008 GTTGATCCATTGAATGATGAATTT
260 GTTGATCCATCAAATGATGAATTT
7361032 AAATCTTTGC
Statistics
Matches: 259, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
312 1 0.00
313 258 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (313 bp):
GAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCAAATGATGAATTCAAACAAAA
GGTTAAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
AACTTTCTCTGGAAAAGCTAATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTC
TCATTATGAATTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAG
TTGATCCATCAAATGATGAATTTGAACAAAAGGGTTAAACAAGTTCTTTAGAT
Found at i:7360942 original size:113 final size:113
Alignment explanation
Indices: 7360739--7360996 Score: 363
Period size: 113 Copynumber: 2.3 Consensus size: 113
7360729 GTTAAACAAG
* * *** *
7360739 TTCTTTAGATGAGTTCTTCTCATTATGAACTCTCTTTGGCGCTGCTGATCCATCAAATGATGAAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGCAAAGCTAATCCATCAAATGATGAAT
* * *
7360804 TCAAGCAAAGGGTTAAACAAGTTCTTCTTATTATGAACTTCTTCTTCC
66 TCAAGCAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCC
* * *
7360852 TTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGCAAAGCTAATCCATCAAGTGATGGAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGCAAAGCTAATCCATCAAATGATGAAT
** * *
7360917 TTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCC
66 TCAAGCAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCC
*
7360965 TTCTTCAAATGAGTTCTTCTCATTATGAACTC
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTC
7360997 GAACTGGAAA
Statistics
Matches: 127, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
113 127 1.00
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.39
Consensus pattern (113 bp):
TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGCAAAGCTAATCCATCAAATGATGAAT
TCAAGCAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCC
Found at i:7361016 original size:113 final size:113
Alignment explanation
Indices: 7360782--7361030 Score: 327
Period size: 113 Copynumber: 2.2 Consensus size: 113
7360772 CTTTGGCGCT
* * *
7360782 GCTGATCCATCAAATGATGAATTCAAGCAAAGGGTTAAACAAGTTCTTCTTATTATGAACTTCTT
1 GCTGATCCATCAAATGATGAATTCAAGCAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTT
* **** *
7360847 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGCAAA
66 CTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
* * * ** * *
7360895 GCTAATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTT
1 GCTGATCCATCAAATGATGAATTCAAGCAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTT
7360960 CTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
66 CTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
* **
7361008 GTTGATCCATTGAATGATGAATT
1 GCTGATCCATCAAATGATGAATT
7361031 TAAATCTTTG
Statistics
Matches: 114, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
113 114 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (113 bp):
GCTGATCCATCAAATGATGAATTCAAGCAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTT
CTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
Found at i:7362712 original size:12 final size:11
Alignment explanation
Indices: 7362694--7362775 Score: 58
Period size: 9 Copynumber: 8.2 Consensus size: 11
7362684 TTATATATAT
7362694 ATTTAAT-AT-
1 ATTTAATAATA
7362703 ATTTAATAATA
1 ATTTAATAATA
7362714 A--TAATAATA
1 ATTTAATAATA
*
7362723 ATATTTATAATA
1 AT-TTAATAATA
7362735 A-TT-ATAATA
1 ATTTAATAATA
*
7362744 A--TAATAATT
1 ATTTAATAATA
7362753 ATTATAATAATA
1 ATT-TAATAATA
7362765 A--TAATAATA
1 ATTTAATAATA
7362774 AT
1 AT
7362776 AAATCAATAT
Statistics
Matches: 60, Mismatches: 3, Indels: 19
0.73 0.04 0.23
Matches are distributed among these distances:
8 1 0.02
9 38 0.63
10 4 0.07
11 1 0.02
12 16 0.27
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
ATTTAATAATA
Found at i:7362714 original size:3 final size:3
Alignment explanation
Indices: 7362706--7362777 Score: 99
Period size: 3 Copynumber: 24.0 Consensus size: 3
7362696 TTAATATATT
* * * *
7362706 TAA TAA TAA TAA TAA TAA TAT TTA TAA TAA TTA TAA TAA TAA TAA TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
7362754 TTA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA
7362778 ATCAATATGG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:7362724 original size:24 final size:25
Alignment explanation
Indices: 7362697--7362776 Score: 119
Period size: 24 Copynumber: 3.2 Consensus size: 25
7362687 TATATATATT
7362697 TAATATATT-TAATAATAATAATAA
1 TAATATATTATAATAATAATAATAA
*
7362721 TAATAT-TTATAATAATTATAATAA
1 TAATATATTATAATAATAATAATAA
7362745 TAATAATTATTATAATAATAATAATAA
1 TAAT-A-TATTATAATAATAATAATAA
7362772 TAATA
1 TAATA
7362777 AATCAATATG
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
23 2 0.04
24 24 0.48
25 1 0.02
26 2 0.04
27 21 0.42
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
TAATATATTATAATAATAATAATAA
Found at i:7363423 original size:225 final size:219
Alignment explanation
Indices: 7363110--7363848 Score: 715
Period size: 200 Copynumber: 3.4 Consensus size: 219
7363100 TTGAACAAGC
*
7363110 TCTTCTTATTATGAACTTGTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAG
1 TCTTCTTATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAG
* * *
7363175 CTGCTCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTC
66 CTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTCTCATTATGAATTTCTTC
* *
7363240 -TTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC-CTGGCAATGTTAATCCATCAAATGA
131 TTTCTTCAGAT---GAGTTCTTCTCATTATGAACT-TACTCTGGAAAAGTTAATCCATCAAATGA
7363303 TGAATTTAAACAAAA-GGTTAAACAAAT
192 TGAATTTAAACAAAAGGGTTAAACAAAT
7363330 TCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1 TCTTCTTATTATGAA---CTTCTT-CTTCTTCAGATGAGTTCTTCTCATTATGAAC-TTCTCTGG
7363395 AAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTCTCATTATGAATT
61 AAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTCTCATTATGAATT
* *
7363460 TCTTCTTATTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAA
126 TCTTC---TTTCTTCAGATGAGTTCTTCTCATTATGAACTTACTCTGGAAAAGTTAATCCATCAA
* * *
7363525 ATGATGGATTTGAACAAAAGGGTTAAACAAGT
188 ATGATGAATTTAAACAAAAGGGTTAAACAAAT
* * * * *
7363557 TC-T-TTA-GATG-AGTTCTTC-TCATT---ATGA--AC-TCTC-TT-TG----GCGCT------
1 TCTTCTTATTATGAACTTCTTCTTC-TTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAA
* ** * * * * *
7363599 GCTGATCCATCAAATGATGAATTCAAGCAAAGGGTTAAACAAGTTCTTCTTATTATGAACTTCTT
65 GCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTCTCATTATGAA--T-TT
* * * * * *
7363664 CTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACTTTCTCTGGCAAAGCTAATCCATCAAGTGA
127 CTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTACTCTGGAAAAGTTAATCCATCAAATGA
* * * *
7363729 TGGATTTGAGCAAAA-GGTTGAACAAAT
192 TGAATTTAAACAAAAGGGTTAAACAAAT
* * *
7363756 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCATTATGAAC-TCGAACTG
1 TCTTCTTATTATGAA---CTTCTT-CTTCTTCAGATGAGTTCTTCTCATTATGAACTTC--TCTG
* ** *
7363820 GAAAAGTTGATCCATTGAATGATGAATTT
60 GAAAAGCTGATCCATCAAATGATGGATTT
7363849 AAATCTTTGC
Statistics
Matches: 433, Mismatches: 43, Indels: 80
0.78 0.08 0.14
Matches are distributed among these distances:
199 12 0.03
200 121 0.28
201 2 0.00
202 4 0.01
203 7 0.02
206 8 0.02
207 3 0.01
208 2 0.00
210 4 0.01
211 2 0.00
212 3 0.01
213 8 0.02
214 3 0.01
215 2 0.00
216 4 0.01
218 3 0.01
219 3 0.01
220 22 0.05
223 6 0.01
224 34 0.08
225 80 0.18
226 77 0.18
227 13 0.03
229 10 0.02
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (219 bp):
TCTTCTTATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAG
CTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTCTCATTATGAATTTCTTC
TTTCTTCAGATGAGTTCTTCTCATTATGAACTTACTCTGGAAAAGTTAATCCATCAAATGATGAA
TTTAAACAAAAGGGTTAAACAAAT
Found at i:7363430 original size:113 final size:110
Alignment explanation
Indices: 7363092--7363560 Score: 604
Period size: 113 Copynumber: 4.2 Consensus size: 110
7363082 ATAGAATTAT
* ** * *
7363092 GCAAAAAGTTGAACAAGCTCTTCTTATTATGAA-CTTGTTCTTCTTCAGATGAGTTCTTCTCATT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATCTTCTTCTTCTTCAGATGAGTTCTTCTCATT
* *
7363156 ATGAAC-TTCTCTGGAAAAGCTGCTCCATCAAGTGATGGATTTGA
66 ATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
7363200 GCAAAAGGTTGAACAAATTCTTCTCATTATGAAT-TTCTTCTTCTTCAGATGACGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATCTTCTTCTTCTTCAGAT---GAGTTCTTCTC
* * * * * * *
7363264 ATTATGAACTCTAC-CTGGCAATGTTAATCCATCAAATGATGAATTTAA
63 ATTATGAACT-TTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
* * *
7363312 ACAAAAGGTTAAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA--TCTTCTT-CTTCTTCAGATGAGTTCTTCTC
7363377 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
63 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
* *
7363425 GCAAAAGATTGAACAAATTCTTCTCATTATGAATTTCTTCTTATTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA--TCTTCTT-CTTCTTCAGATGAGTTCTTCTC
*
7363490 ATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAATGATGGATTTGA
63 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
* * *
7363538 ACAAAAGGGTTAAACAAGTTCTT
1 GCAAAA-GGTTGAACAAATTCTT
7363561 TAGATGAGTT
Statistics
Matches: 313, Mismatches: 36, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
108 44 0.14
111 20 0.06
112 58 0.19
113 161 0.51
114 14 0.04
115 5 0.02
116 11 0.04
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (110 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAATCTTCTTCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
Found at i:7363615 original size:87 final size:86
Alignment explanation
Indices: 7363469--7363647 Score: 243
Period size: 87 Copynumber: 2.1 Consensus size: 86
7363459 TTCTTCTTAT
* * *
7363469 TTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAATGATGGAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGAT-GAA
*
7363534 TTGAA-CAAAAGGGTTAAACAAG
65 TTCAAGC-AAAGGGTTAAACAAG
* * ****
7363556 TTCTTTAGATGAGTTCTTCTCATTATGAACTCTCTTTGGCGCTGCTGATCCATCAAATGATGAAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAAT
7363621 TCAAGCAAAGGGTTAAACAAG
66 TCAAGCAAAGGGTTAAACAAG
7363642 TTCTTC
1 TTCTTC
7363648 TTATTATGAA
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
86 26 0.32
87 54 0.68
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (86 bp):
TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAAT
TCAAGCAAAGGGTTAAACAAG
Found at i:7363697 original size:313 final size:313
Alignment explanation
Indices: 7363253--7363848 Score: 960
Period size: 313 Copynumber: 1.9 Consensus size: 313
7363243 TTCAGATGAC
* *
7363253 GAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTAATCCATCAAATGATGAATTTAAACAAAA
1 GAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCAAATGATGAATTCAAACAAAA
7363318 GGTTAAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
66 GGTTAAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
*
7363383 AACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTC
131 AACTTTCTCTGGAAAAGCTAATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTC
* * ****
7363448 TCATTATGAATTTCTTCTTATTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAG
196 TCATTATGAATTTCTTCTTACTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAG
*
7363513 TTGATCCATCAAATGATGGATTTGAACAAAAGGGTTAAACAAGTTCTTTAGAT
261 TTGATCCATCAAATGATGAATTTGAACAAAAGGGTTAAACAAGTTCTTTAGAT
* ** * *
7363566 GAGTTCTTCTCATTATGAACTCT-CTTTGGCGCTGCTGATCCATCAAATGATGAATTCAAGCAAA
1 GAGTTCTTCTCATTATGAACTCTAC-CTGGCAATGCTAATCCATCAAATGATGAATTCAAACAAA
* * *
7363630 GGGTTAAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTATTAT
65 AGGTTAAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAT
* * *
7363695 GAACTTTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTT
130 GAACTTTCTCTGGAAAAGCTAATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTT
*
7363760 CTCATTATGAATTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
195 CTCATTATGAATTTCTTCTTACTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
**
7363825 GTTGATCCATTGAATGATGAATTT
260 GTTGATCCATCAAATGATGAATTT
7363849 AAATCTTTGC
Statistics
Matches: 258, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
312 1 0.00
313 257 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (313 bp):
GAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCAAATGATGAATTCAAACAAAA
GGTTAAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
AACTTTCTCTGGAAAAGCTAATCCATCAAATGATGGATTTGAGCAAAAGATTGAACAAATTCTTC
TCATTATGAATTTCTTCTTACTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAG
TTGATCCATCAAATGATGAATTTGAACAAAAGGGTTAAACAAGTTCTTTAGAT
Found at i:7363759 original size:113 final size:113
Alignment explanation
Indices: 7363556--7363813 Score: 354
Period size: 113 Copynumber: 2.3 Consensus size: 113
7363546 GTTAAACAAG
* * *** *
7363556 TTCTTTAGATGAGTTCTTCTCATTATGAACTCTCTTTGGCGCTGCTGATCCATCAAATGATGAAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGCAAAGCTAATCCATCAAATGATGAAT
* * *
7363621 TCAAGCAAAGGGTTAAACAAGTTCTTCTTATTATGAACTTCTTCTTCC
66 TCAAGCAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCC
* * * *
7363669 TTCTTCAGATGAGTTCTTCTTATTATGAACTTTCTCTGGCAAAGCTAATCCATCAAGTGATGGAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGCAAAGCTAATCCATCAAATGATGAAT
** * *
7363734 TTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCC
66 TCAAGCAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCC
*
7363782 TTCTTCAAATGAGTTCTTCTCATTATGAACTC
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTC
7363814 GAACTGGAAA
Statistics
Matches: 125, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
113 125 1.00
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (113 bp):
TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGCAAAGCTAATCCATCAAATGATGAAT
TCAAGCAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCC
Found at i:7363833 original size:113 final size:113
Alignment explanation
Indices: 7363599--7363847 Score: 318
Period size: 113 Copynumber: 2.2 Consensus size: 113
7363589 CTTTGGCGCT
* * *
7363599 GCTGATCCATCAAATGATGAATTCAAGCAAAGGGTTAAACAAGTTCTTCTTATTATGAACTTCTT
1 GCTGATCCATCAAATGATGAATTCAAGCAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTT
* * **** *
7363664 CTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACTTTCTCTGGCAAA
66 CTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
* * * ** * *
7363712 GCTAATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTT
1 GCTGATCCATCAAATGATGAATTCAAGCAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTT
7363777 CTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
66 CTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
* **
7363825 GTTGATCCATTGAATGATGAATT
1 GCTGATCCATCAAATGATGAATT
7363848 TAAATCTTTG
Statistics
Matches: 113, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
113 113 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (113 bp):
GCTGATCCATCAAATGATGAATTCAAGCAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTT
CTTCCTTCTTCAAATGAGTTCTTCTCATTATGAACTCGAACTGGAAAA
Found at i:7365529 original size:3 final size:3
Alignment explanation
Indices: 7365523--7365591 Score: 111
Period size: 3 Copynumber: 23.0 Consensus size: 3
7365513 TATATATATT
* * *
7365523 TAA TAA TAA TAA TAA TAA TAA TAA TAT TTA TAA TAA TTA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7365571 TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
7365592 ATCAATATGG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:7371604 original size:13 final size:13
Alignment explanation
Indices: 7371586--7371611 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7371576 ATAAACACAT
7371586 AATAAAAATAAAA
1 AATAAAAATAAAA
7371599 AATAAAAATAAAA
1 AATAAAAATAAAA
7371612 TTGTAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AATAAAAATAAAA
Found at i:7371605 original size:5 final size:6
Alignment explanation
Indices: 7371556--7371628 Score: 51
Period size: 6 Copynumber: 12.3 Consensus size: 6
7371546 TTGGGTTTTG
* * * * *
7371556 AAAATA AAAAGA AAAA-G AAAATA AACA-C ATAATA AAAATAA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT-A AAAATA
* * *
7371603 AAAATA AAATTG TAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
7371629 TATTGAAAAA
Statistics
Matches: 49, Mismatches: 15, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
5 6 0.12
6 37 0.76
7 6 0.12
ACGTcount: A:0.77, C:0.03, G:0.04, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:7371619 original size:18 final size:19
Alignment explanation
Indices: 7371598--7371633 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
7371588 TAAAAATAAA
7371598 AAATAAAAATAAA-ATTGT
1 AAATAAAAATAAATATTGT
7371616 AAATAAAAATAAATATTG
1 AAATAAAAATAAATATTG
7371634 AAAAAACGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.28
Consensus pattern (19 bp):
AAATAAAAATAAATATTGT
Found at i:7374241 original size:22 final size:23
Alignment explanation
Indices: 7374216--7374261 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7374206 TTTCAAGCAC
7374216 TTATTT-TTC-TCTCTCGTTTTCT
1 TTATTTATTCTTCT-TCGTTTTCT
*
7374238 TTATTTATTCTTCTTCTTTTTCT
1 TTATTTATTCTTCTTCGTTTTCT
7374261 T
1 T
7374262 CTTCTTCCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 12 0.57
24 3 0.14
ACGTcount: A:0.07, C:0.20, G:0.02, T:0.72
Consensus pattern (23 bp):
TTATTTATTCTTCTTCGTTTTCT
Found at i:7374265 original size:15 final size:15
Alignment explanation
Indices: 7374243--7374279 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 15
7374233 TTTCTTTATT
7374243 TATTCTTCTTCTT--
1 TATTCTTCTTCTTCC
7374256 T-TTCTTCTTCTTCC
1 TATTCTTCTTCTTCC
7374270 TATTCTTCTT
1 TATTCTTCTT
7374280 ATTTTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 11 0.52
13 1 0.05
14 1 0.05
15 8 0.38
ACGTcount: A:0.05, C:0.27, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTCTTCTTCTTCC
Found at i:7379363 original size:21 final size:21
Alignment explanation
Indices: 7379337--7379392 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
7379327 TAGAGATGGT
7379337 GGTGGTGATGGTGAAGGTGGA
1 GGTGGTGATGGTGAAGGTGGA
* * *
7379358 GGTGGTAATGATGGAGGTGGA
1 GGTGGTGATGGTGAAGGTGGA
*
7379379 GATGGTGATGGTGA
1 GGTGGTGATGGTGA
7379393 TGAAGTAGTA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.21, C:0.00, G:0.54, T:0.25
Consensus pattern (21 bp):
GGTGGTGATGGTGAAGGTGGA
Found at i:7381329 original size:24 final size:24
Alignment explanation
Indices: 7381283--7381334 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
7381273 GTCGAAAAGA
* *
7381283 AGAAACTTGAGGAACTTGAGGTGT
1 AGAAAATTGAGGAACTTGAGGTGC
*
7381307 AGAAAATTGAGGAA-TTTATGGTGC
1 AGAAAATTGAGGAACTTGA-GGTGC
7381331 AGAA
1 AGAA
7381335 TATGTATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 3 0.12
24 21 0.88
ACGTcount: A:0.38, C:0.06, G:0.31, T:0.25
Consensus pattern (24 bp):
AGAAAATTGAGGAACTTGAGGTGC
Found at i:7387598 original size:17 final size:19
Alignment explanation
Indices: 7387571--7387605 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7387561 CATTTTATAA
7387571 TAAACTTAATAT-CTAATT
1 TAAACTTAATATGCTAATT
7387589 TAAA-TTAATATGCTAAT
1 TAAACTTAATATGCTAAT
7387606 ATAATTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.43
Consensus pattern (19 bp):
TAAACTTAATATGCTAATT
Found at i:7387612 original size:17 final size:17
Alignment explanation
Indices: 7387570--7387609 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
7387560 TCATTTTATA
7387570 ATAAACTTAATATCTAAT
1 ATAAA-TTAATATCTAAT
*
7387588 TTAAATTAATATGCTAAT
1 ATAAATTAATAT-CTAAT
7387606 ATAA
1 ATAA
7387610 TTATTATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (17 bp):
ATAAATTAATATCTAAT
Found at i:7388761 original size:44 final size:44
Alignment explanation
Indices: 7388709--7388792 Score: 150
Period size: 44 Copynumber: 1.9 Consensus size: 44
7388699 TCAAACTAGA
*
7388709 GACCGAGGTTTCATTTTACTATGCCGTTTAGAGATCAAAACAGG
1 GACCGAGGTTTCATTTTACTATGCCATTTAGAGATCAAAACAGG
*
7388753 GACCGAGGTTTCATTTTACTATTCCATTTAGAGATCAAAA
1 GACCGAGGTTTCATTTTACTATGCCATTTAGAGATCAAAA
7388793 TAGTTATGTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (44 bp):
GACCGAGGTTTCATTTTACTATGCCATTTAGAGATCAAAACAGG
Found at i:7389547 original size:21 final size:21
Alignment explanation
Indices: 7389518--7389572 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
7389508 ATTCTGACTA
7389518 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* *
7389539 TCGCGTTGCGATTTTCCGAAT
1 TCGCATTGCGATTTTCCAAAT
*
7389560 TCGCAATGCGATT
1 TCGCATTGCGATT
7389573 ATGACTATCG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:7389585 original size:20 final size:20
Alignment explanation
Indices: 7389560--7389625 Score: 114
Period size: 20 Copynumber: 3.3 Consensus size: 20
7389550 TTTTCCGAAT
*
7389560 TCGCAATGCGATTATGACTA
1 TCGCAATGCGATTCTGACTA
7389580 TCGCAATGCGATTCTGACTA
1 TCGCAATGCGATTCTGACTA
*
7389600 TCGCAACGCGATTCTGACTA
1 TCGCAATGCGATTCTGACTA
7389620 TCGCAA
1 TCGCAA
7389626 CACTGAATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (20 bp):
TCGCAATGCGATTCTGACTA
Found at i:7392775 original size:12 final size:12
Alignment explanation
Indices: 7392760--7392790 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7392750 CCAAAAAAAG
7392760 GCAATCAAAATC
1 GCAATCAAAATC
7392772 GCAATCAAAATC
1 GCAATCAAAATC
*
7392784 CCAATCA
1 GCAATCA
7392791 CAACCGGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.48, C:0.29, G:0.06, T:0.16
Consensus pattern (12 bp):
GCAATCAAAATC
Found at i:7392986 original size:20 final size:20
Alignment explanation
Indices: 7392961--7393165 Score: 200
Period size: 20 Copynumber: 10.8 Consensus size: 20
7392951 TTACACATTC
*
7392961 ATTTGAATATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
7392981 ATTTGATTATCGCAACTC-A
1 ATTTGACTATCGCAACGCGA
*
7393000 A----A-AATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
7393015 ATTTGATTATCGCAACGCAA
1 ATTTGACTATCGCAACGCGA
7393035 ATTTGACTATCGCAA--CGA
1 ATTTGACTATCGCAACGCGA
**
7393053 A----AAAATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
7393069 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
7393089 ATTTGACTATCGCAACGAGA
1 ATTTGACTATCGCAACGCGA
*
7393109 ATTTGACTATCGCAACGTGA
1 ATTTGACTATCGCAACGCGA
* * *
7393129 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
*
7393149 ATTCGACTATCGCAACG
1 ATTTGACTATCGCAACG
7393166 AGAAAATCGC
Statistics
Matches: 154, Mismatches: 19, Indels: 24
0.78 0.10 0.12
Matches are distributed among these distances:
14 17 0.11
15 3 0.02
16 4 0.03
18 3 0.02
19 3 0.02
20 124 0.81
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:7393012 original size:34 final size:34
Alignment explanation
Indices: 7392969--7393035 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
7392959 TCATTTGAAT
*
7392969 ATCGCAACGCGAATTTGATTATCGCAACTCAAAA
1 ATCGCAACGCGAATTTGATTATCGCAACGCAAAA
7393003 ATCGCAACGCGAATTTGATTATCGCAACGCAAA
1 ATCGCAACGCGAATTTGATTATCGCAACGCAAA
7393036 TTTGACTATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.22
Consensus pattern (34 bp):
ATCGCAACGCGAATTTGATTATCGCAACGCAAAA
Found at i:7393046 original size:54 final size:54
Alignment explanation
Indices: 7392961--7393209 Score: 268
Period size: 54 Copynumber: 4.5 Consensus size: 54
7392951 TTACACATTC
* **
7392961 ATTTGAATATCGCAACGCGAATTTGATTATCGCAACTCAAAAATCGCAACGCGA
1 ATTTGAATATCGCAACGCGAATTTGACTATCGCAACGAAAAAATCGCAACGCGA
* *
7393015 ATTTGATTATCGCAACGCAAATTTGACTATCGCAACGAAAAAATCGCAACGCGA
1 ATTTGAATATCGCAACGCGAATTTGACTATCGCAACGAAAAAATCGCAACGCGA
* * *
7393069 ATTTGACTATCGCAACGCGAATTTGACTATCGCAACGAGAATTTGACTATCGCAACGTGA
1 ATTTGAATATCGCAACGCGAATTTGACTATCGCAACGA-AA----A-AATCGCAACGCGA
* * * * * **
7393129 ATTTGATTATCGCAACGGGTATTCGACTATCGCAACGAGAAAATCGCAAAAC-A
1 ATTTGAATATCGCAACGCGAATTTGACTATCGCAACGAAAAAATCGCAACGCGA
* *
7393182 TATTAGACTATCGCAACGCGAA-TTGACT
1 -ATTTGAATATCGCAACGCGAATTTGACT
7393210 TTCACGTTGC
Statistics
Matches: 165, Mismatches: 23, Indels: 15
0.81 0.11 0.07
Matches are distributed among these distances:
53 6 0.04
54 109 0.66
55 3 0.02
59 2 0.01
60 45 0.27
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (54 bp):
ATTTGAATATCGCAACGCGAATTTGACTATCGCAACGAAAAAATCGCAACGCGA
Found at i:7393158 original size:114 final size:113
Alignment explanation
Indices: 7393003--7393209 Score: 308
Period size: 114 Copynumber: 1.8 Consensus size: 113
7392993 CAACTCAAAA
* **
7393003 ATCGCAACGCGAATTTGATTATCGCAACGCAAATTTGACTATCGCAACGAAAAAATCGCAACGCG
1 ATCGCAACGCGAATTTGATTATCGCAACGCAAATTCGACTATCGCAACGAAAAAATCGCAAAAC-
*
7393068 A-ATTTGACTATCGCAACGCGAATTTGACTATCGCAACGAGAATTTGACT
65 ATATTAGACTATCGCAACGCGAA-TTGACTATCGCAACGAGAATTTGACT
* *** *
7393117 ATCGCAACGTGAATTTGATTATCGCAACGGGTATTCGACTATCGCAACGAGAAAATCGCAAAACA
1 ATCGCAACGCGAATTTGATTATCGCAACGCAAATTCGACTATCGCAACGAAAAAATCGCAAAACA
7393182 TATTAGACTATCGCAACGCGAATTGACT
66 TATTAGACTATCGCAACGCGAATTGACT
7393210 TTCACGTTGC
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
113 7 0.08
114 76 0.92
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (113 bp):
ATCGCAACGCGAATTTGATTATCGCAACGCAAATTCGACTATCGCAACGAAAAAATCGCAAAACA
TATTAGACTATCGCAACGCGAATTGACTATCGCAACGAGAATTTGACT
Found at i:7393259 original size:20 final size:20
Alignment explanation
Indices: 7393214--7393261 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
7393204 TTGACTTTCA
*
7393214 CGTTGCGATTTTGGCTTTCG
1 CGTTGCGATTTTGGCTTTAG
7393234 -GATTGCGATTTTGAG-TTTAG
1 CG-TTGCGATTTTG-GCTTTAG
7393254 CGTTGCGA
1 CGTTGCGA
7393262 AAGTGTACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 1 0.04
20 21 0.88
21 2 0.08
ACGTcount: A:0.12, C:0.15, G:0.31, T:0.42
Consensus pattern (20 bp):
CGTTGCGATTTTGGCTTTAG
Found at i:7393419 original size:14 final size:14
Alignment explanation
Indices: 7393360--7393420 Score: 77
Period size: 14 Copynumber: 4.3 Consensus size: 14
7393350 CACAAATAAG
*
7393360 AATTATTTACACATC
1 AATT-TTTACAAATC
**
7393375 AATTTAAACAAATC
1 AATTTTTACAAATC
*
7393389 AACTTTTACAAATC
1 AATTTTTACAAATC
7393403 AATTTTTACAAATC
1 AATTTTTACAAATC
7393417 AATT
1 AATT
7393421 AAACAAACAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
14 35 0.90
15 4 0.10
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTTTTACAAATC
Found at i:7394875 original size:21 final size:22
Alignment explanation
Indices: 7394825--7394927 Score: 65
Period size: 21 Copynumber: 4.9 Consensus size: 22
7394815 AATGTTGGGA
* *
7394825 GGGACCTCTTCAAC-GATGACAG
1 GGGA-CTCTTGAACGGATGAGAG
* *
7394847 TGGCCTCTTGAACGG-TGAGAG
1 GGGACTCTTGAACGGATGAGAG
* *
7394868 GGGACTCTTG-AGGGATGATAG
1 GGGACTCTTGAACGGATGAGAG
* *
7394889 GGGCCTCTTGAAC-GAT-AGGG
1 GGGACTCTTGAACGGATGAGAG
*
7394909 GAGGCCTCTTGAAC-GATGA
1 G-GGACTCTTGAACGGATGA
7394928 CAGGTGAGTC
Statistics
Matches: 64, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
20 6 0.09
21 53 0.83
22 5 0.08
ACGTcount: A:0.23, C:0.19, G:0.36, T:0.21
Consensus pattern (22 bp):
GGGACTCTTGAACGGATGAGAG
Found at i:7394918 original size:42 final size:42
Alignment explanation
Indices: 7394839--7394931 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
7394829 CCTCTTCAAC
* *
7394839 GATGACAGTGGCCTCTTGAACGGTGAGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATGAGAGGGGACTCTTGAGG
* * * **
7394881 GATGATAGGGGCCTCTTGAACGAT-AGGGGAGGCCTCTTGAAC
1 GATGACAGGGGCCTCTTGAACGATGAGAGG-GGACTCTTGAGG
7394923 GATGACAGG
1 GATGACAGG
7394932 TGAGTCGGGC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 4 0.10
42 38 0.90
ACGTcount: A:0.24, C:0.17, G:0.39, T:0.20
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGATGAGAGGGGACTCTTGAGG
Found at i:7395447 original size:18 final size:19
Alignment explanation
Indices: 7395417--7395463 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
7395407 GAAACTTAAA
*
7395417 ATCGCAACACGAA-TGACT
1 ATCGCAACGCGAATTGACT
*
7395435 ATTGCAACGCGAATTTGACT
1 ATCGCAACGCGAA-TTGACT
7395455 ATCGCAACG
1 ATCGCAACG
7395464 AGAGAATCGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 11 0.46
20 13 0.54
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (19 bp):
ATCGCAACGCGAATTGACT
Found at i:7395704 original size:18 final size:18
Alignment explanation
Indices: 7395681--7395730 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
7395671 TTTACTAAGC
7395681 AATCTAAGTGAAATGGTT
1 AATCTAAGTGAAATGGTT
7395699 AATCTAAGTGAAATGGTT
1 AATCTAAGTGAAATGGTT
7395717 AATCTAAGTGAAAT
1 AATCTAAGTGAAAT
7395731 TACGAGTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.32
Consensus pattern (18 bp):
AATCTAAGTGAAATGGTT
Found at i:7397484 original size:20 final size:20
Alignment explanation
Indices: 7397461--7397528 Score: 84
Period size: 20 Copynumber: 3.5 Consensus size: 20
7397451 TCTGAAACTT
7397461 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
*
7397481 AAAATTGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** * *
7397501 ACTATCGCAACGCGAAACT-
1 AAAATCGCAACACGAAAATG
7397520 AAAATCGCA
1 AAAATCGCA
7397529 TTGCGATTAT
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
19 7 0.17
20 33 0.82
ACGTcount: A:0.50, C:0.22, G:0.15, T:0.13
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:7397938 original size:22 final size:22
Alignment explanation
Indices: 7397913--7397965 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
7397903 AAGATAGACG
*
7397913 GATTTTGCCGGAGATGGGGACT
1 GATTTCGCCGGAGATGGGGACT
* *
7397935 GATTTCGTCGGAGATGGGGACG
1 GATTTCGCCGGAGATGGGGACT
*
7397957 GATGTCGCC
1 GATTTCGCC
7397966 TTAGAGAGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.17, C:0.17, G:0.42, T:0.25
Consensus pattern (22 bp):
GATTTCGCCGGAGATGGGGACT
Found at i:7398160 original size:20 final size:20
Alignment explanation
Indices: 7398130--7398243 Score: 156
Period size: 20 Copynumber: 5.7 Consensus size: 20
7398120 GCGCTTTGAA
*
7398130 AATCGCATTGCGATAGTCAG
1 AATCGCGTTGCGATAGTCAG
* *
7398150 CATCGCGTTGCAATAGTCAG
1 AATCGCGTTGCGATAGTCAG
7398170 AATCGCGTTGCGATAGTCAG
1 AATCGCGTTGCGATAGTCAG
*
7398190 AATCTCGTTGCGATAGTCAG
1 AATCGCGTTGCGATAGTCAG
* * *
7398210 AATCACGTTGCGATAGTAAT
1 AATCGCGTTGCGATAGTCAG
*
7398230 AATCGCATTGCGAT
1 AATCGCGTTGCGAT
7398244 TTACATATTC
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 83 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (20 bp):
AATCGCGTTGCGATAGTCAG
Found at i:7398255 original size:20 final size:20
Alignment explanation
Indices: 7398232--7398282 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
7398222 ATAGTAATAA
7398232 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
*
7398252 TCGCATTACGATTTACATAT
1 TCGCATTGCGATTTACATAT
7398272 TCGCATTGCGA
1 TCGCATTGCGA
7398283 ATTCGAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (20 bp):
TCGCATTGCGATTTACATAT
Found at i:7398324 original size:21 final size:21
Alignment explanation
Indices: 7398272--7398324 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
7398262 ATTTACATAT
*
7398272 TCGCATTGCGAATTCGAAAAA
1 TCGCAATGCGAATTCGAAAAA
* * * *
7398293 TCGTAACGCGAATTTGGAAAA
1 TCGCAATGCGAATTCGAAAAA
7398314 TCGCAATGCGA
1 TCGCAATGCGA
7398325 TAGTCAGAAT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTCGAAAAA
Found at i:7408861 original size:31 final size:31
Alignment explanation
Indices: 7408825--7408904 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
7408815 CATTATAATG
7408825 TTCATTCAAATATAGATAGGGTTTATAAACA
1 TTCATTCAAATATAGATAGGGTTTATAAACA
* *
7408856 TTCATTCAAATAAAAATAGGGTTTATAAACA
1 TTCATTCAAATATAGATAGGGTTTATAAACA
*
7408887 TTTATTCAAATATAGATA
1 TTCATTCAAATATAGATA
7408905 TTCATCATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.36
Consensus pattern (31 bp):
TTCATTCAAATATAGATAGGGTTTATAAACA
Found at i:7408920 original size:27 final size:27
Alignment explanation
Indices: 7408890--7408950 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
7408880 ATAAACATTT
*
7408890 ATTCAAATATAGATATTCATCATATTC
1 ATTCAAATATAGATATCCATCATATTC
*
7408917 ATTCAAATATTGATATCCATCATATTC
1 ATTCAAATATAGATATCCATCATATTC
7408944 ATTCAAA
1 ATTCAAA
7408951 AACTAAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.41, C:0.16, G:0.03, T:0.39
Consensus pattern (27 bp):
ATTCAAATATAGATATCCATCATATTC
Found at i:7409581 original size:44 final size:43
Alignment explanation
Indices: 7409532--7409658 Score: 116
Period size: 44 Copynumber: 3.2 Consensus size: 43
7409522 TTAAACATTA
7409532 TATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAAGTTTTAG
1 TATTTTATCTTTGTTTTAGGTATTTTAGTTTAAAT-AGTTTTAG
**
7409576 TATTTTAAT-TAAGTTTTAGG-A---TA--TT--AT--TTTT-G
1 TATTTT-ATCTTTGTTTTAGGTATTTTAGTTTAAATAGTTTTAG
*
7409608 TATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTATTAG
1 TATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATA-GTTTTAG
7409652 TATTTTA
1 TATTTTA
7409659 ATTAGGATTT
Statistics
Matches: 64, Mismatches: 5, Indels: 28
0.66 0.05 0.29
Matches are distributed among these distances:
31 2 0.03
32 16 0.25
33 5 0.08
36 4 0.06
38 4 0.06
40 4 0.06
43 4 0.06
44 23 0.36
45 2 0.03
ACGTcount: A:0.26, C:0.02, G:0.13, T:0.59
Consensus pattern (43 bp):
TATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGTTTTAG
Found at i:7409738 original size:77 final size:75
Alignment explanation
Indices: 7409531--7409746 Score: 285
Period size: 76 Copynumber: 2.8 Consensus size: 75
7409521 TTTAAACATT
* * *
7409531 ATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAAGTTTTAGTATTTTAATTAAGTTTTAGG
1 ATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAAT-AGTTTTAGTATTTTAATTAGGATTTAGA
*
7409596 ATATTATTTTT
65 ATATTATTTTA
* *
7409607 GTATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTATTAGTATTTTAATTAGGATTTAGA
1 ATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATA-GTTTTAGTATTTTAATTAGGATTTAGA
7409672 ATATTATTTTAA
65 ATATTATTTT-A
*
7409684 ATATTATTAT-TATT-TTTTAGGTATTTTAATTTAAATAGTTTTAAGTGA-TTTAATTAGGATTT
1 ATATT-TTATCT-TTGTTTTAGGTATTTTAGTTTAAATAGTTTT-AGT-ATTTTAATTAGGATTT
7409746 A
62 A
7409747 AGATGTTTTA
Statistics
Matches: 125, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
75 1 0.01
76 72 0.58
77 45 0.36
78 7 0.06
ACGTcount: A:0.30, C:0.01, G:0.12, T:0.56
Consensus pattern (75 bp):
ATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGTTTTAGTATTTTAATTAGGATTTAGAA
TATTATTTTA
Found at i:7410378 original size:14 final size:11
Alignment explanation
Indices: 7410332--7410366 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
7410322 AATTTAGTTA
*
7410332 TTTTATTTATT
1 TTTTATTTAAT
7410343 TGTTTATTTAAT
1 T-TTTATTTAAT
7410355 TTTTATTTAAT
1 TTTTATTTAAT
7410366 T
1 T
7410367 ATACTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (11 bp):
TTTTATTTAAT
Found at i:7416288 original size:24 final size:24
Alignment explanation
Indices: 7416261--7416335 Score: 114
Period size: 24 Copynumber: 3.1 Consensus size: 24
7416251 ATCAAAACAT
*
7416261 AATTCAGGTCAAGTATTAGATCAG
1 AATTCAGGTCAAGTATCAGATCAG
* *
7416285 AATTCATGTCAAATATCAGATCAG
1 AATTCAGGTCAAGTATCAGATCAG
*
7416309 AATCCAGGTCAAGTATCAGATCAG
1 AATTCAGGTCAAGTATCAGATCAG
7416333 AAT
1 AAT
7416336 CTATGTCAGC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (24 bp):
AATTCAGGTCAAGTATCAGATCAG
Found at i:7416343 original size:24 final size:24
Alignment explanation
Indices: 7416268--7416343 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 24
7416258 CATAATTCAG
*
7416268 GTCAAGTATTAGATCAGAAT-TCAT
1 GTCAAGTATCAGATCAGAATCT-AT
* * *
7416292 GTCAAATATCAGATCAGAATCCAG
1 GTCAAGTATCAGATCAGAATCTAT
7416316 GTCAAGTATCAGATCAGAATCTAT
1 GTCAAGTATCAGATCAGAATCTAT
7416340 GTCA
1 GTCA
7416344 GCTATCATAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCTAT
Found at i:7420972 original size:24 final size:24
Alignment explanation
Indices: 7420945--7421029 Score: 89
Period size: 24 Copynumber: 3.5 Consensus size: 24
7420935 ATATATCAAA
* *
7420945 ATCAAAACATAATTCAGGTCAAGT
1 ATCAAATCAGAATTCAGGTCAAGT
* * *
7420969 ATCATATCAGAATTCATGTCAAAT
1 ATCAAATCAGAATTCAGGTCAAGT
* * *
7420993 ATTAGATCAGAATCCAGGTCAAGT
1 ATCAAATCAGAATTCAGGTCAAGT
*
7421017 ATCATATCAGAAT
1 ATCAAATCAGAAT
7421030 CTATATCAGT
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.28
Consensus pattern (24 bp):
ATCAAATCAGAATTCAGGTCAAGT
Found at i:7421030 original size:24 final size:24
Alignment explanation
Indices: 7420959--7421030 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 24
7420949 AAACATAATT
*
7420959 CAGGTCAAGTATCATATCAGAATT
1 CAGGTCAAGTATCATATCAGAATC
* * * *
7420983 CATGTCAAATATTAGATCAGAATC
1 CAGGTCAAGTATCATATCAGAATC
7421007 CAGGTCAAGTATCATATCAGAATC
1 CAGGTCAAGTATCATATCAGAATC
7421031 TATATCAGTT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (24 bp):
CAGGTCAAGTATCATATCAGAATC
Found at i:7426089 original size:82 final size:82
Alignment explanation
Indices: 7425989--7426232 Score: 356
Period size: 82 Copynumber: 3.0 Consensus size: 82
7425979 TGGATTAAAC
7425989 TTAAGTTTTAGGATAATATTTTAAACATTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAAT
1 TTAAGTTTTAGGATAATATTTTAAACATTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAAT
7426054 AAGTTTTAGTATTTTAA
66 AAGTTTTAGTATTTTAA
7426071 TTAAGTTTTAGGATAATATTTTAAACATTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAAT
1 TTAAGTTTTAGGATAATATTTTAAACATTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAAT
* *
7426136 AGGTTTTACTATTTTAA
66 AAGTTTTAGTATTTTAA
* * * * * *
7426153 TTAGGATTTAGAATATTATTTTAAATATTAT-TATTA---TT-TTTTAGGTATTTTAGTTTAAAT
1 TTAAGTTTTAGGATAATATTTTAAACATTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAAT
*
7426213 -AGTTTTAAGTGTTTTAA
66 AAGTTTT-AGTATTTTAA
7426230 TTA
1 TTA
7426233 GGATTTAAGA
Statistics
Matches: 150, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
76 5 0.03
77 33 0.22
78 2 0.01
81 4 0.03
82 106 0.71
ACGTcount: A:0.32, C:0.02, G:0.11, T:0.55
Consensus pattern (82 bp):
TTAAGTTTTAGGATAATATTTTAAACATTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAAT
AAGTTTTAGTATTTTAA
Found at i:7426117 original size:38 final size:38
Alignment explanation
Indices: 7425993--7426120 Score: 132
Period size: 38 Copynumber: 3.2 Consensus size: 38
7425983 TTAAACTTAA
7425993 GTTTTAGGATAATATTTTAAACATTATATTTTATCTTT
1 GTTTTAGGATAATATTTTAAACATTATATTTTATCTTT
** * * **
7426031 GTTTTAGGTATTTTAGTTTAAATAAGTTTTAGTATTTTAAT-TAA
1 GTTTTAGG-ATAATATTTTAAA-CA---TTA-TATTTT-ATCTTT
7426075 GTTTTAGGATAATATTTTAAACATTATATTTTATCTTT
1 GTTTTAGGATAATATTTTAAACATTATATTTTATCTTT
7426113 GTTTTAGG
1 GTTTTAGG
7426121 TATTTTAGTT
Statistics
Matches: 70, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
37 2 0.03
38 23 0.33
39 13 0.19
40 1 0.01
42 1 0.01
43 13 0.19
44 15 0.21
45 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.12, T:0.55
Consensus pattern (38 bp):
GTTTTAGGATAATATTTTAAACATTATATTTTATCTTT
Found at i:7427191 original size:15 final size:15
Alignment explanation
Indices: 7427159--7427201 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
7427149 AAAGATTATA
*
7427159 AAATTAAATAAAATT
1 AAATTAAAGAAAATT
7427174 AAATCTAAAGAAAA-T
1 AAAT-TAAAGAAAATT
*
7427189 AAAGTAAAGAAAA
1 AAATTAAAGAAAA
7427202 GAAAGTTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 9 0.36
15 8 0.32
16 8 0.32
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (15 bp):
AAATTAAAGAAAATT
Found at i:7432700 original size:29 final size:29
Alignment explanation
Indices: 7432658--7432756 Score: 189
Period size: 29 Copynumber: 3.4 Consensus size: 29
7432648 GAGAAGGGTA
7432658 TGCTAACTTGCGTCGGGTCCATAAGAGGT
1 TGCTAACTTGCGTCGGGTCCATAAGAGGT
7432687 TGCTAACTTGCGTCGGGTCCATAAGAGGT
1 TGCTAACTTGCGTCGGGTCCATAAGAGGT
*
7432716 TGCTAACTTGCGTCGGGTCCATAAGAGAT
1 TGCTAACTTGCGTCGGGTCCATAAGAGGT
7432745 TGCTAACTTGCG
1 TGCTAACTTGCG
7432757 CCCATTAATA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 69 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (29 bp):
TGCTAACTTGCGTCGGGTCCATAAGAGGT
Found at i:7433326 original size:16 final size:16
Alignment explanation
Indices: 7433307--7433340 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7433297 CAATATACGA
7433307 ATAAAAATATATTTAT
1 ATAAAAATATATTTAT
**
7433323 ATAAATGTATATTTAT
1 ATAAAAATATATTTAT
7433339 AT
1 AT
7433341 TTAGATGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATAAAAATATATTTAT
Found at i:7433414 original size:16 final size:18
Alignment explanation
Indices: 7433382--7433415 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
7433372 TATTAATGTA
7433382 TGAATCATTTATATTTTT
1 TGAATCATTTATATTTTT
7433400 TGAAT-ATTT-TATTTTT
1 TGAATCATTTATATTTTT
7433416 AATAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (18 bp):
TGAATCATTTATATTTTT
Found at i:7433956 original size:21 final size:23
Alignment explanation
Indices: 7433911--7433957 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
7433901 GTGTCACCAA
7433911 TAACATATATCATGATCATGTGT
1 TAACATATATCATGATCATGTGT
* *
7433934 TAACATATGTCA-GATCCTG-GT
1 TAACATATATCATGATCATGTGT
7433955 TAA
1 TAA
7433958 ATGATTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 6 0.27
23 11 0.50
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (23 bp):
TAACATATATCATGATCATGTGT
Found at i:7434088 original size:130 final size:130
Alignment explanation
Indices: 7433884--7434131 Score: 397
Period size: 130 Copynumber: 1.9 Consensus size: 130
7433874 AATTTTCTTC
* * * *
7433884 TAATTAGGTGGTGACATGTGTCACCAATAACATATATCATGATCATGTGTTAACATATGTCAGAT
1 TAATTAGGTGGTGACATGCGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
** *
7433949 CCTGGTTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
66 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAAA
* * * *
7434014 TAATTAGGTGGTGACATGCGTCACCAATGACACGTGTCATGATCATGTGCTAACACATGTTAGAT
1 TAATTAGGTGGTGACATGCGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
7434079 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGAT
66 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGAT
7434132 TATATAAATA
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
130 107 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.37
Consensus pattern (130 bp):
TAATTAGGTGGTGACATGCGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAAA
Found at i:7434578 original size:35 final size:35
Alignment explanation
Indices: 7434528--7434604 Score: 118
Period size: 35 Copynumber: 2.2 Consensus size: 35
7434518 AATTGAATTT
* *
7434528 AATTGAATTATTTTGGAATTTAGGGTTGAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTGAGAATGA
* *
7434563 AATTGAATTACTTTGGAAATTGGGGTTTAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTGAGAATGA
7434598 AATTGAA
1 AATTGAA
7434605 GACTGTTTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.01, G:0.25, T:0.38
Consensus pattern (35 bp):
AATTGAATTACTTTGGAAATTAGGGTTGAGAATGA
Found at i:7451150 original size:2 final size:2
Alignment explanation
Indices: 7451143--7451187 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
7451133 ATGTAAAATA
7451143 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7451185 AT A
1 AT A
7451188 CTTTAAAAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7451244 original size:21 final size:21
Alignment explanation
Indices: 7451210--7451251 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7451200 AAACTGTATA
*
7451210 ATATATTATATTTTCAAAATC
1 ATATAATATATTTTCAAAATC
* *
7451231 ATATAATATGTTTTTAAAATC
1 ATATAATATATTTTCAAAATC
7451252 GTGTTTCCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (21 bp):
ATATAATATATTTTCAAAATC
Found at i:7452711 original size:12 final size:12
Alignment explanation
Indices: 7452694--7452718 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7452684 GGTATACAAG
7452694 AAAAAAAAAGAA
1 AAAAAAAAAGAA
7452706 AAAAAAAAAGAA
1 AAAAAAAAAGAA
7452718 A
1 A
7452719 TGATAATATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:7453291 original size:21 final size:21
Alignment explanation
Indices: 7453252--7453291 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7453242 TTGGGGCCAG
*
7453252 AGTTGAGGAAGAGATTGGGTC
1 AGTTGAGGAAGAGAATGGGTC
7453273 AGTTGAGGGAAGA-AATGGG
1 AGTTGA-GGAAGAGAATGGG
7453292 CCTGGATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.33, C:0.03, G:0.45, T:0.20
Consensus pattern (21 bp):
AGTTGAGGAAGAGAATGGGTC
Found at i:7454334 original size:35 final size:35
Alignment explanation
Indices: 7454295--7454425 Score: 156
Period size: 37 Copynumber: 3.6 Consensus size: 35
7454285 TTTGAAACGT
7454295 ATATAATATATAGTTTTTAAAACATTTTTAAAAAC
1 ATATAATATATAGTTTTTAAAACATTTTTAAAAAC
* * **
7454330 ATATAATATATAGTTTTGAAAACATTTATGAAAATGT
1 ATATAATATATAGTTTTTAAAACATTT-TTAAAA-AC
*
7454367 ATATAATATATAGTTTTTAAAA-ATACTTTTGAAAAC
1 ATATAATATATAGTTTTTAAAACAT--TTTTAAAAAC
*
7454403 ATATAATATATAATTTTTTAAAA
1 ATATAATATAT-AGTTTTTAAAA
7454426 AATGATTTTT
Statistics
Matches: 81, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
35 26 0.32
36 18 0.22
37 35 0.43
38 2 0.02
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.43
Consensus pattern (35 bp):
ATATAATATATAGTTTTTAAAACATTTTTAAAAAC
Found at i:7454453 original size:39 final size:37
Alignment explanation
Indices: 7454369--7454445 Score: 102
Period size: 39 Copynumber: 2.1 Consensus size: 37
7454359 GAAAATGTAT
* *
7454369 ATAATATAT-AGTTTTTAAAAATACTTTTGAAAACAT
1 ATAATATATAATTTTTTAAAAATACTTTTGAAAACAC
*
7454405 ATAATATATAATTTTTTAAAAAATGATTTTTGAAAACAC
1 ATAATATATAATTTTTT-AAAAAT-ACTTTTGAAAACAC
7454444 AT
1 AT
7454446 TTTATATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 9 0.26
37 6 0.17
38 6 0.17
39 14 0.40
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.42
Consensus pattern (37 bp):
ATAATATATAATTTTTTAAAAATACTTTTGAAAACAC
Found at i:7454472 original size:15 final size:16
Alignment explanation
Indices: 7454444--7454484 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
7454434 TTGAAAACAC
7454444 ATTTTA-TATATATAG
1 ATTTTATTATATATAG
7454459 ATTTTATTAT-TATAG
1 ATTTTATTATATATAG
*
7454474 -TTATATTATAT
1 ATTTTATTATAT
7454485 TTATTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 8 0.35
15 12 0.52
16 3 0.13
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.59
Consensus pattern (16 bp):
ATTTTATTATATATAG
Found at i:7454498 original size:21 final size:20
Alignment explanation
Indices: 7454445--7454527 Score: 71
Period size: 21 Copynumber: 4.0 Consensus size: 20
7454435 TGAAAACACA
* *
7454445 TTTTATATATATAGATTTTAT
1 TTTTATTTATAT-TATTTTAT
*
7454466 TATTATAGTTATATTATATTTAT
1 T-TT-TATTTATATTAT-TTTAT
7454489 TTTTATTTAT-TTATTTATTAT
1 TTTTATTTATATTA-TT-TTAT
7454510 TTTTATTT-TATTATTTTA
1 TTTTATTTATATTATTTTA
7454528 GGCCCAAAAG
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
19 3 0.06
20 7 0.13
21 23 0.44
22 6 0.12
23 13 0.25
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTATTTATATTATTTTAT
Found at i:7454519 original size:14 final size:14
Alignment explanation
Indices: 7454459--7454526 Score: 61
Period size: 14 Copynumber: 4.9 Consensus size: 14
7454449 ATATATATAG
*
7454459 ATTTTATTA-TTAT
1 ATTTTATTATTTTT
* *
7454472 AGTTATATTATATTT
1 A-TTTTATTATTTTT
*
7454487 ATTTTTATT-TATTT
1 A-TTTTATTATTTTT
7454501 A-TTTATTATTTTT
1 ATTTTATTATTTTT
7454514 ATTTTATTATTTT
1 ATTTTATTATTTT
7454527 AGGCCCAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
12 6 0.13
13 6 0.13
14 24 0.53
15 9 0.20
ACGTcount: A:0.26, C:0.00, G:0.01, T:0.72
Consensus pattern (14 bp):
ATTTTATTATTTTT
Found at i:7455290 original size:21 final size:24
Alignment explanation
Indices: 7455265--7455316 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
7455255 ATCTTAATTC
7455265 TTTTTTAAT-T-CTTTT-A-TATT
1 TTTTTTAATATCCTTTTCATTATT
*
7455285 TATTTTAATATCCTTTTCATTATT
1 TTTTTTAATATCCTTTTCATTATT
7455309 TTTTTTAA
1 TTTTTTAA
7455317 ATTTCATCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 8 0.31
21 1 0.04
22 5 0.19
23 1 0.04
24 11 0.42
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTTTTAATATCCTTTTCATTATT
Found at i:7462849 original size:18 final size:18
Alignment explanation
Indices: 7462823--7462857 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7462813 TAGCATATTA
*
7462823 AAAACAAAAATTAAAAAT
1 AAAACAAAAATGAAAAAT
*
7462841 AAAAGAAAAATGAAAAA
1 AAAACAAAAATGAAAAA
7462858 CTTGAAAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.80, C:0.03, G:0.06, T:0.11
Consensus pattern (18 bp):
AAAACAAAAATGAAAAAT
Found at i:7464215 original size:23 final size:23
Alignment explanation
Indices: 7464185--7464229 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
7464175 TCCAGCCATT
7464185 TTGTAATTACTATTGCAACTCTC
1 TTGTAATTACTATTGCAACTCTC
* *
7464208 TTGTAATTACTGTTGTAACTCT
1 TTGTAATTACTATTGCAACTCT
7464230 TGTAACTGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (23 bp):
TTGTAATTACTATTGCAACTCTC
Found at i:7469354 original size:7 final size:7
Alignment explanation
Indices: 7469342--7469371 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
7469332 GTATACTTGA
7469342 GTTTCTG
1 GTTTCTG
7469349 GTTTCTG
1 GTTTCTG
7469356 GTTTCTG
1 GTTTCTG
7469363 GTTT-TG
1 GTTTCTG
7469369 GTT
1 GTT
7469372 CGTTGTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.00, C:0.10, G:0.30, T:0.60
Consensus pattern (7 bp):
GTTTCTG
Found at i:7473804 original size:35 final size:35
Alignment explanation
Indices: 7473729--7473807 Score: 88
Period size: 35 Copynumber: 2.3 Consensus size: 35
7473719 CCTAAACTCT
* *
7473729 AAATTAAAGTATTTTAGAATTTGAGGTTTAAAATG
1 AAATTGAAGTATTTTAGAATTTGAGGTTTAAAATA
* * * *
7473764 TAATTGAATTATTTTGGAATTTG-GGATTTAGAATA
1 AAATTGAAGTATTTTAGAATTTGAGG-TTTAAAATA
7473799 AAATTGAAG
1 AAATTGAAG
7473808 ACTGTGTTGC
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
34 2 0.06
35 33 0.94
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (35 bp):
AAATTGAAGTATTTTAGAATTTGAGGTTTAAAATA
Found at i:7474075 original size:4 final size:4
Alignment explanation
Indices: 7474066--7474091 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
7474056 TATATTAAGG
7474066 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
7474092 GTGGTTTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:7479811 original size:2 final size:2
Alignment explanation
Indices: 7479804--7479854 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
7479794 TAGATTTCTT
7479804 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7479846 TA TA TA TA T
1 TA TA TA TA T
7479855 GAAATAAACT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7480684 original size:3 final size:3
Alignment explanation
Indices: 7480676--7480708 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
7480666 CAGTCCTGAG
7480676 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7480709 ATGAACTCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7484912 original size:60 final size:60
Alignment explanation
Indices: 7484794--7484979 Score: 200
Period size: 60 Copynumber: 3.1 Consensus size: 60
7484784 TTTGGATGGA
* * *
7484794 TTTGGGGATAAAATTGGAA-GATTTAAAAGTTTAGGGATCAATTTAA-AATAAGAGTCATAG
1 TTTGAGGATGAAATTGGAATG-TTTAAAAGTTTAGGGATCAA-TTAAGAATGAGAGTCATAG
* * *
7484854 TTTGAGGATGGAATTGGAATGTTTAAAAGTTTAAGGA-CTAATTAAGAATGAGCA-TCATAA
1 TTTGAGGATGAAATTGGAATGTTTAAAAGTTTAGGGATC-AATTAAGAATGAG-AGTCATAG
* * * * * *
7484914 TTTGAGGATGAAATTGAAATATTCAAAAGTTTCGGGATCAATTTAGAATGGGAGTCATAG
1 TTTGAGGATGAAATTGGAATGTTTAAAAGTTTAGGGATCAATTAAGAATGAGAGTCATAG
7484974 TTTGAG
1 TTTGAG
7484980 AACATATGAT
Statistics
Matches: 105, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
59 6 0.06
60 96 0.91
61 3 0.03
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (60 bp):
TTTGAGGATGAAATTGGAATGTTTAAAAGTTTAGGGATCAATTAAGAATGAGAGTCATAG
Found at i:7494083 original size:26 final size:27
Alignment explanation
Indices: 7494027--7494085 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
7494017 GACCGTTGAA
* *
7494027 ATTTGAAAAATTAAATGATATACAATTT
1 ATTT-AAAAATTAAACGATATACAATAT
* *
7494055 ATTTAAAATTTAAACGTTATA-AATAT
1 ATTTAAAAATTAAACGATATACAATAT
7494081 ATTTA
1 ATTTA
7494086 TTTTAATGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 9 0.33
27 14 0.52
28 4 0.15
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.42
Consensus pattern (27 bp):
ATTTAAAAATTAAACGATATACAATAT
Found at i:7494270 original size:13 final size:13
Alignment explanation
Indices: 7494252--7494282 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7494242 GGATTTATAT
7494252 GGTTTAGAATTAA
1 GGTTTAGAATTAA
7494265 GGTTTAGAATTAA
1 GGTTTAGAATTAA
*
7494278 AGTTT
1 GGTTT
7494283 TGAGTTTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (13 bp):
GGTTTAGAATTAA
Found at i:7494652 original size:34 final size:34
Alignment explanation
Indices: 7494614--7494714 Score: 101
Period size: 34 Copynumber: 3.1 Consensus size: 34
7494604 TTCTGACTTC
7494614 GTTTATAGTTTTTGTGAAATTTCAATATGGGTTT
1 GTTTATAGTTTTTGTGAAATTTCAATATGGGTTT
*
7494648 GTTTATAGTTTCTT-CG--ATTTC--TGAT---TTT
1 GTTTATAGTTT-TTGTGAAATTTCAAT-ATGGGTTT
* *
7494676 GTTTATAGTTTCTGTGAAATTTCAATTTGGGTTT
1 GTTTATAGTTTTTGTGAAATTTCAATATGGGTTT
7494710 GTTTA
1 GTTTA
7494715 ATCTCAACTG
Statistics
Matches: 53, Mismatches: 4, Indels: 20
0.69 0.05 0.26
Matches are distributed among these distances:
27 1 0.02
28 15 0.28
30 6 0.11
31 3 0.06
32 6 0.11
34 20 0.38
35 2 0.04
ACGTcount: A:0.20, C:0.06, G:0.19, T:0.55
Consensus pattern (34 bp):
GTTTATAGTTTTTGTGAAATTTCAATATGGGTTT
Found at i:7494667 original size:62 final size:62
Alignment explanation
Indices: 7494595--7494714 Score: 195
Period size: 62 Copynumber: 1.9 Consensus size: 62
7494585 CTTATTTCAC
*
7494595 TTCTGCGATTTCTGACTTCGTTTATAGTTTTTGTGAAATTTCAATATGGGTTTGTTTATAGT
1 TTCTGCGATTTCTGACTTCGTTTATAGTTTCTGTGAAATTTCAATATGGGTTTGTTTATAGT
* * * *
7494657 TTCTTCGATTTCTGATTTTGTTTATAGTTTCTGTGAAATTTCAATTTGGGTTTGTTTA
1 TTCTGCGATTTCTGACTTCGTTTATAGTTTCTGTGAAATTTCAATATGGGTTTGTTTA
7494715 ATCTCAACTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 53 1.00
ACGTcount: A:0.18, C:0.09, G:0.18, T:0.54
Consensus pattern (62 bp):
TTCTGCGATTTCTGACTTCGTTTATAGTTTCTGTGAAATTTCAATATGGGTTTGTTTATAGT
Found at i:7496514 original size:16 final size:17
Alignment explanation
Indices: 7496493--7496524 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7496483 TCAATTATTA
7496493 ATATTTTT-TAAAATAC
1 ATATTTTTATAAAATAC
7496509 ATATTTTTATAAAATA
1 ATATTTTTATAAAATA
7496525 TAATTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTTTTATAAAATAC
Found at i:7500527 original size:9 final size:9
Alignment explanation
Indices: 7500499--7500550 Score: 63
Period size: 9 Copynumber: 5.8 Consensus size: 9
7500489 TAATGATAAA
7500499 ATAAATATAT
1 ATAAA-ATAT
7500509 ATAGAAATAT
1 ATA-AAATAT
7500519 ATAAAATAT
1 ATAAAATAT
7500528 A-AAAA-AT
1 ATAAAATAT
*
7500535 ATAAAAAAT
1 ATAAAATAT
7500544 ATAAAAT
1 ATAAAAT
7500551 TTGTTATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
7 3 0.08
8 8 0.21
9 15 0.39
10 10 0.26
11 2 0.05
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (9 bp):
ATAAAATAT
Found at i:7500536 original size:16 final size:16
Alignment explanation
Indices: 7500494--7500550 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
7500484 AGAACTAATG
* *
7500494 ATAAAATA-AATATAT
1 ATAAAATATAAAAAAT
7500509 ATAGAAATATATAAAATAT
1 ATA-AAATATA-AAAA-AT
*
7500528 AAAAAATATAAAAAAT
1 ATAAAATATAAAAAAT
7500544 ATAAAAT
1 ATAAAAT
7500551 TTGTTATAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
15 3 0.09
16 13 0.38
17 5 0.15
18 9 0.26
19 4 0.12
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (16 bp):
ATAAAATATAAAAAAT
Found at i:7512885 original size:87 final size:87
Alignment explanation
Indices: 7512788--7513042 Score: 341
Period size: 87 Copynumber: 2.9 Consensus size: 87
7512778 AATTATATCA
* * *
7512788 TTTATCATAATTTATAAAAAGTTATGTACTTTATTGTAATTTATAAATAGTTTTGTACTTTATTA
1 TTTATTATAATTTATAAAAAGTTTTGTACTTTATTGTAATTTATAAATAGTTTTGTACTTTATTG
**
7512853 TAATTTATAAATAGTTTTGTAT
66 TAATTTATAAATAGTTCCGTAT
* *
7512875 TTTATTATAATTTATAAAAAGTTTTGTACTTTATTGTAATTTATAAATAATTTTATACTTTATTG
1 TTTATTATAATTTATAAAAAGTTTTGTACTTTATTGTAATTTATAAATAGTTTTGTACTTTATTG
*
7512940 TAATTTATAAATAGTTCCGTGT
66 TAATTTATAAATAGTTCCGTAT
* * * * * * * *
7512962 TATATTGTAATTTATAAAAACTTTTGTACTTTTTTGTAATTTATTAAA-GGTTATGCATTTTATT
1 TTTATTATAATTTATAAAAAGTTTTGTACTTTATTGTAATTTA-TAAATAGTTTTGTACTTTATT
*
7513026 GTAATTTATAAAAAGTT
65 GTAATTTATAAATAGTT
7513043 ATATCCTTTA
Statistics
Matches: 148, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
87 144 0.97
88 4 0.03
ACGTcount: A:0.35, C:0.04, G:0.09, T:0.53
Consensus pattern (87 bp):
TTTATTATAATTTATAAAAAGTTTTGTACTTTATTGTAATTTATAAATAGTTTTGTACTTTATTG
TAATTTATAAATAGTTCCGTAT
Found at i:7513058 original size:29 final size:29
Alignment explanation
Indices: 7512759--7513069 Score: 306
Period size: 29 Copynumber: 10.8 Consensus size: 29
7512749 TATTTTGTCC
* * *
7512759 CTTTATTGTATTTTATAAAAA-TTATAT-
1 CTTTATTGTAATTTATAAAAAGTTTTGTA
** *
7512786 CATTTATCATAATTTATAAAAAGTTATGTA
1 C-TTTATTGTAATTTATAAAAAGTTTTGTA
*
7512816 CTTTATTGTAATTTATAAATAGTTTTGTA
1 CTTTATTGTAATTTATAAAAAGTTTTGTA
* *
7512845 CTTTATTATAATTTATAAATAGTTTTGTA
1 CTTTATTGTAATTTATAAAAAGTTTTGTA
* *
7512874 TTTTATTATAATTTATAAAAAGTTTTGTA
1 CTTTATTGTAATTTATAAAAAGTTTTGTA
*
7512903 CTTTATTGTAATTTATAAATAA-TTTTATA
1 CTTTATTGTAATTTATAAA-AAGTTTTGTA
* **
7512932 CTTTATTGTAATTTATAAATAGTTCCGT-
1 CTTTATTGTAATTTATAAAAAGTTTTGTA
* *
7512960 GTTATATTGTAATTTATAAAAACTTTTGTA
1 CTT-TATTGTAATTTATAAAAAGTTTTGTA
* * * * *
7512990 CTTTTTTGTAATTTATTAAAGGTTATGCA
1 CTTTATTGTAATTTATAAAAAGTTTTGTA
* * * *
7513019 TTTTATTGTAATTTATAAAAAGTTATATC
1 CTTTATTGTAATTTATAAAAAGTTTTGTA
* * *
7513048 CTTTATGGTAAATTCTAAAAAG
1 CTTTATTGTAATTTATAAAAAG
7513070 ATTAGTTTTT
Statistics
Matches: 236, Mismatches: 41, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
27 1 0.00
28 20 0.08
29 210 0.89
30 5 0.02
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (29 bp):
CTTTATTGTAATTTATAAAAAGTTTTGTA
Found at i:7523433 original size:5 final size:6
Alignment explanation
Indices: 7523418--7523561 Score: 53
Period size: 6 Copynumber: 21.8 Consensus size: 6
7523408 TTCTTGAAGA
* *
7523418 AAAAAG AAAAAG AAAAATG ATAAAATG -AAAAG AAAATAA AAAATAA AAAAATG
1 AAAAAG AAAAAG AAAAA-G A-AAAA-G AAAAAG AAAA-AG AAAA-AG AAAAA-G
7523471 AAAAGAATG AAAAATGCG AAAAATG AATAAA- AAGAAAG AAAAA- ATAAAAG
1 -AAA-AA-G AAAAA---G AAAAA-G AA-AAAG AA-AAAG AAAAAG A-AAAAG
* * * *
7523521 -AAAAG AAAAAAG AAAAAT TAAAAG AATAAG AATAAG AAAAA
1 AAAAAG -AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
7523562 AGAATTAAAA
Statistics
Matches: 112, Mismatches: 11, Indels: 30
0.73 0.07 0.20
Matches are distributed among these distances:
5 7 0.06
6 54 0.48
7 26 0.23
8 15 0.13
9 10 0.09
ACGTcount: A:0.76, C:0.01, G:0.13, T:0.10
Consensus pattern (6 bp):
AAAAAG
Found at i:7523459 original size:26 final size:26
Alignment explanation
Indices: 7523419--7523561 Score: 91
Period size: 26 Copynumber: 5.4 Consensus size: 26
7523409 TCTTGAAGAA
* *
7523419 AAAAGAAAAAGAAAAATGATAAAATG
1 AAAAGAAAAAGAAAAATAAAAAAATG
7523445 AAAAGAAAATA-AAAAATAAAAAAATG
1 AAAAGAAAA-AGAAAAATAAAAAAATG
* **
7523471 AAAAG--AATGAAAAATGCGAAAAATG
1 AAAAGAAAAAGAAAAAT-AAAAAAATG
* *
7523496 --AATAAAAAGAAAGAA-AAAATAAAAG
1 AAAAGAAAAAGAAA-AATAAAA-AAATG
*
7523521 AAAAGAAAAAAGAAAAATTAAAAGAATAAG
1 AAAAG-AAAAAGAAAAA-TAAAA-AA-ATG
7523551 AATAAGAAAAA
1 AA-AAGAAAAA
7523562 AGAATTAAAA
Statistics
Matches: 91, Mismatches: 12, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.02
24 10 0.11
25 17 0.19
26 29 0.32
27 5 0.05
28 9 0.10
29 6 0.07
30 10 0.11
31 3 0.03
ACGTcount: A:0.76, C:0.01, G:0.13, T:0.10
Consensus pattern (26 bp):
AAAAGAAAAAGAAAAATAAAAAAATG
Found at i:7523474 original size:16 final size:16
Alignment explanation
Indices: 7523430--7523537 Score: 58
Period size: 17 Copynumber: 6.2 Consensus size: 16
7523420 AAAGAAAAAG
*
7523430 AAAAATGATAAAATGAAA
1 AAAAATGAAAAAAT--AA
7523448 AGAAAAT-AAAAAATAA
1 A-AAAATGAAAAAATAA
*
7523464 AAAAATGAAAAGAAT-G
1 AAAAATGAAAA-AATAA
7523480 AAAAATGCGAAAAATGAATAA
1 AAAAAT--G-AAAA--AATAA
*
7523501 AAAGAAAGAAAAAATAA
1 AAA-AATGAAAAAATAA
* *
7523518 AAGAAAAGAAAAAAGAA
1 AA-AAATGAAAAAATAA
7523535 AAA
1 AAA
7523538 TTAAAAGAAT
Statistics
Matches: 75, Mismatches: 5, Indels: 22
0.74 0.05 0.22
Matches are distributed among these distances:
15 5 0.07
16 14 0.19
17 24 0.32
18 9 0.12
19 13 0.17
20 5 0.07
21 3 0.04
22 2 0.03
ACGTcount: A:0.76, C:0.01, G:0.13, T:0.10
Consensus pattern (16 bp):
AAAAATGAAAAAATAA
Found at i:7523520 original size:12 final size:12
Alignment explanation
Indices: 7523505--7523546 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
7523495 GAATAAAAAG
7523505 AAAGAAAAAATA
1 AAAGAAAAAATA
7523517 AAAGAAAAGAA-A
1 AAAGAAAA-AATA
*
7523529 AAAGAAAAATTA
1 AAAGAAAAAATA
7523541 AAAGAA
1 AAAGAA
7523547 TAAGAATAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 1 0.04
12 24 0.89
13 2 0.07
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (12 bp):
AAAGAAAAAATA
Found at i:7523557 original size:24 final size:24
Alignment explanation
Indices: 7523419--7523562 Score: 86
Period size: 24 Copynumber: 5.8 Consensus size: 24
7523409 TCTTGAAGAA
7523419 AAAAG-AAAAAGAAAAATGATAAAATG
1 AAAAGAAAAAAGAAAAA--ATAAAA-G
*
7523445 AAAAG--AAAATAAAAAATAAAA-
1 AAAAGAAAAAAGAAAAAATAAAAG
*
7523466 AAATGAAAAGAATG-AAAAATGCGAAAAATG
1 AAAAGAAAA-AA-GAAAAAAT----AAAA-G
7523496 AATAA-AAAGAAAGAAAAAATAAAAG
1 AA-AAGAAA-AAAGAAAAAATAAAAG
*
7523521 AAAAGAAAAAAGAAAAATTAAAAG
1 AAAAGAAAAAAGAAAAAATAAAAG
*
7523545 AATAAG-AATAAGAAAAAA
1 AA-AAGAAAAAAGAAAAAA
7523563 GAATTAAAAG
Statistics
Matches: 96, Mismatches: 7, Indels: 32
0.71 0.05 0.24
Matches are distributed among these distances:
21 4 0.04
23 8 0.08
24 37 0.39
25 18 0.19
26 9 0.09
28 4 0.04
29 1 0.01
30 13 0.14
31 2 0.02
ACGTcount: A:0.76, C:0.01, G:0.13, T:0.10
Consensus pattern (24 bp):
AAAAGAAAAAAGAAAAAATAAAAG
Found at i:7524933 original size:37 final size:37
Alignment explanation
Indices: 7524883--7524980 Score: 126
Period size: 37 Copynumber: 2.7 Consensus size: 37
7524873 TTTGACCTTC
* * * *
7524883 GAAGCAAGTCAATCTTAAGCCTTCACGAAAGAGTAGT
1 GAAGCAAATCAATCTTAAGCATTCACGAAAGAGCAAT
* *
7524920 GAAGCAATTCAATCTTAAGCATTCACGGAAGAGCAAT
1 GAAGCAAATCAATCTTAAGCATTCACGAAAGAGCAAT
*
7524957 GAAGCAAATCAAT-TTGAGCATTCA
1 GAAGCAAATCAATCTTAAGCATTCA
7524981 AGGAAGAGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
36 10 0.19
37 44 0.81
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.22
Consensus pattern (37 bp):
GAAGCAAATCAATCTTAAGCATTCACGAAAGAGCAAT
Found at i:7525084 original size:55 final size:55
Alignment explanation
Indices: 7525011--7525209 Score: 274
Period size: 55 Copynumber: 3.6 Consensus size: 55
7525001 TCAGTGTTTG
*
7525011 AGTCATATACTTCTTGAAAGAATAGGGAGAAGACACGTTTGTTGAAGATTGTTCA
1 AGTCATATACTTCCTGAAAGAATAGGGAGAAGACACGTTTGTTGAAGATTGTTCA
* * ** * * *
7525066 AGTCCTATACTTCCTGAAAGAATAGGGAGTAGACGTGTCTGTTAAAAATTGTTCA
1 AGTCATATACTTCCTGAAAGAATAGGGAGAAGACACGTTTGTTGAAGATTGTTCA
* * *
7525121 AGTCATATTCTTCCTGAAAGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCG
1 AGTCATATACTTCCTGAAAGAATAGGGAGAAGACACGTTTGTTGAAGATTGTTCA
*
7525176 AGTTC-TATACTCCCTGAAAGAATAGGGAGAAGAC
1 AG-TCATATACTTCCTGAAAGAATAGGGAGAAGAC
7525210 CTATTTTCAA
Statistics
Matches: 123, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
55 121 0.98
56 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (55 bp):
AGTCATATACTTCCTGAAAGAATAGGGAGAAGACACGTTTGTTGAAGATTGTTCA
Found at i:7525192 original size:110 final size:111
Alignment explanation
Indices: 7525011--7525312 Score: 353
Period size: 110 Copynumber: 2.7 Consensus size: 111
7525001 TCAGTGTTTG
* * * * *
7525011 AGTCATATACTTCTTGAAAGAATAGGGAGAAGACACGTTTGTTGAAGATTGTTCAAGTCCTATAC
1 AGTCATATTCTTCCTGAAAGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTTCTATAC
* * * *
7525076 TTCCTGAAAGAATAGGGAGTAGACGTGTCTGTT-AAAA-ATT-GTTCA
66 TCCCTGAAAGAATAGGGAGAAGACCTAT-T-TTCAAAAGATTAGTTCA
7525121 AGTCATATTCTTCCTGAAAGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTTCTATAC
1 AGTCATATTCTTCCTGAAAGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTTCTATAC
* *
7525186 TCCCTGAAAGAATAGGGAGAAGACCTATTTTCAAAAGATTATTTTA
66 TCCCTGAAAGAATAGGGAGAAGACCTATTTTCAAAAGATTAGTTCA
** * * * * * *
7525232 TTTCA-ATTCTCCCTGATAGAATATGGAGCAGAC-CCTTTTTTATAAGATTGTTCGAGTTCTATA
1 AGTCATATTCTTCCTGAAAGAATAGGGAGCAGACACGTTTGTT-GAAGATTGTTCGAGTTCTATA
*
7525295 CTCCTTGAAAGAACTAGG
65 CTCCCTGAAAGAA-TAGG
7525313 AACATACCCG
Statistics
Matches: 167, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
108 2 0.01
109 11 0.07
110 144 0.86
111 10 0.06
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (111 bp):
AGTCATATTCTTCCTGAAAGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTTCTATAC
TCCCTGAAAGAATAGGGAGAAGACCTATTTTCAAAAGATTAGTTCA
Found at i:7525377 original size:55 final size:55
Alignment explanation
Indices: 7525005--7525378 Score: 270
Period size: 55 Copynumber: 6.8 Consensus size: 55
7524995 GGTTAATCAG
* * * * * *
7525005 TGTTTGAGTCATATACTTCTTGAAAGAATAGGGAGAAGACACGTTTGTTGAAGAT
1 TGTTCGAGTCCTATACTCCTTGAAAGAATAGGGAGTAGACCCGTTTTTTGAAGAT
* ** * * * *
7525060 TGTTCAAGTCCTATACTTCC-TGAAAGAATAGGGAGTAGACGTGTCTGTTAAAAAT
1 TGTTCGAGTCCTATAC-TCCTTGAAAGAATAGGGAGTAGACCCGTTTTTTGAAGAT
* * * * * *
7525115 TGTTCAAGTCATATTCTTCC-TGAAAGAATAGGGAGCAGACACGTTTGTTGAAGAT
1 TGTTCGAGTCCTATAC-TCCTTGAAAGAATAGGGAGTAGACCCGTTTTTTGAAGAT
* * * ** ***
7525170 TGTTCGAGTTCTATACTCCCTGAAAGAATAGGGAGAAGACCTATTTTCAAAAGAT
1 TGTTCGAGTCCTATACTCCTTGAAAGAATAGGGAGTAGACCCGTTTTTTGAAGAT
* ** * * * * * * * * *
7525225 TATTTTATTTCAATTCTCCCTGATAGAATATGGAGCAGACCC-TTTTTTATAAGAT
1 TGTTCGAGTCCTATACTCCTTGAAAGAATAGGGAGTAGACCCGTTTTTT-GAAGAT
* ** *
7525280 TGTTCGAGTTCTATACTCCTTGAAAGAACTA-GGAACATACCCGTTTTTTGAAGAT
1 TGTTCGAGTCCTATACTCCTTGAAAGAA-TAGGGAGTAGACCCGTTTTTTGAAGAT
* * *
7525335 TTTTCGAGTCCTATACTCCTTGAAAGAAAAGGGAGTGGACCCGT
1 TGTTCGAGTCCTATACTCCTTGAAAGAATAGGGAGTAGACCCGT
7525379 CCTTCGAAGA
Statistics
Matches: 252, Mismatches: 61, Indels: 12
0.78 0.19 0.04
Matches are distributed among these distances:
54 8 0.03
55 234 0.93
56 10 0.04
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (55 bp):
TGTTCGAGTCCTATACTCCTTGAAAGAATAGGGAGTAGACCCGTTTTTTGAAGAT
Found at i:7525388 original size:55 final size:55
Alignment explanation
Indices: 7525275--7525393 Score: 134
Period size: 55 Copynumber: 2.2 Consensus size: 55
7525265 CCTTTTTTAT
* * * ** *
7525275 AAGATTGTTCGAGTTCTATACTCCTTGAAAGAACTAGGAACATACCCGTTTTTTG
1 AAGATTTTTCGAGTCCTATACTCCTTGAAAGAACAAGGAACATACCCGTCCTTCG
* *
7525330 AAGATTTTTCGAGTCCTATACTCCTTGAAAGAA-AAGGGA-GTGGACCCGTCCTTCG
1 AAGATTTTTCGAGTCCTATACTCCTTGAAAGAACAAGGAACAT--ACCCGTCCTTCG
7525385 AAGATTTTT
1 AAGATTTTT
7525394 TTCAAGTCTC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
53 1 0.02
54 4 0.07
55 49 0.91
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (55 bp):
AAGATTTTTCGAGTCCTATACTCCTTGAAAGAACAAGGAACATACCCGTCCTTCG
Found at i:7526016 original size:14 final size:15
Alignment explanation
Indices: 7525989--7526017 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7525979 CAAAAGGGTA
7525989 TTTATTTTTGTATTG
1 TTTATTTTTGTATTG
7526004 TTTATTTTT-TATTG
1 TTTATTTTTGTATTG
7526018 GATTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (15 bp):
TTTATTTTTGTATTG
Found at i:7527063 original size:21 final size:21
Alignment explanation
Indices: 7527038--7527096 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
7527028 CACATTTATG
*
7527038 TATATGTTAAT-ATATATGTTA
1 TATATATTAATAATATATG-TA
7527059 TATATATTAATAAATATATGTA
1 TATATATTAAT-AATATATGTA
*
7527081 TATA-ATT-ATTATATAT
1 TATATATTAATAATATAT
7527097 CACATGGCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 6 0.18
20 2 0.06
21 13 0.38
22 6 0.18
23 7 0.21
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (21 bp):
TATATATTAATAATATATGTA
Found at i:7530307 original size:13 final size:13
Alignment explanation
Indices: 7530289--7530348 Score: 75
Period size: 13 Copynumber: 4.6 Consensus size: 13
7530279 TGCGTCATAA
* *
7530289 ATTTATGACGCGC
1 ATTTATGACACAC
7530302 ATTTATGACACAC
1 ATTTATGACACAC
7530315 ATTTATGACACAC
1 ATTTATGACACAC
* * *
7530328 ATTTTTGACGCGC
1 ATTTATGACACAC
7530341 ATTTATGA
1 ATTTATGA
7530349 TGTTAATTGA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (13 bp):
ATTTATGACACAC
Found at i:7530430 original size:85 final size:86
Alignment explanation
Indices: 7530333--7530493 Score: 200
Period size: 85 Copynumber: 1.9 Consensus size: 86
7530323 CACACATTTT
* * * * * **
7530333 TGACGCGCATTTATGA-TGTTAATTGAGTGTCATTGAAGCCCCCATTAT-AAATTAAGATGACAC
1 TGACACGCATTTATGACT-TGAATTGAGTGTCATTGAAGCACACATCATAAAAAAAAGATGACAC
*
7530396 ACATTTGTGTGTCATAAATATA
65 ACATTCGTGTGTCATAAATATA
* * *
7530418 TGACACGCATTTATGACTTGCATTGCGTGTCATTGAAGCACACATCATAAAAAAAAGATGATACA
1 TGACACGCATTTATGACTTGAATTGAGTGTCATTGAAGCACACATCATAAAAAAAAGATGACACA
7530483 CATTCGTGTGT
66 CATTCGTGTGT
7530494 TGTGATTGTA
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 39 0.62
86 24 0.38
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32
Consensus pattern (86 bp):
TGACACGCATTTATGACTTGAATTGAGTGTCATTGAAGCACACATCATAAAAAAAAGATGACACA
CATTCGTGTGTCATAAATATA
Found at i:7530521 original size:2 final size:2
Alignment explanation
Indices: 7530514--7530550 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7530504 TTTCGTAAAT
7530514 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7530551 TGTAGATTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7530604 original size:2 final size:2
Alignment explanation
Indices: 7530597--7530630 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7530587 ATGCCTCATA
7530597 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7530631 TGTAGATTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7530650 original size:80 final size:80
Alignment explanation
Indices: 7530517--7530702 Score: 363
Period size: 80 Copynumber: 2.3 Consensus size: 80
7530507 CGTAAATTAT
7530517 ATATATATATATATATATATATATATATATATATTGTAGATTGACAAATAATCAAACTAAATCAT
1 ATATATATATATATATATATATATATATATATATTGTAGATTGACAAATAATCAAACTAAATCAT
7530582 ATTTAATGCCTCATA
66 ATTTAATGCCTCATA
7530597 ATATATATATATATATATATATATATATATATATTGTAGATTGACAAATAATCAAACTAAATCAT
1 ATATATATATATATATATATATATATATATATATTGTAGATTGACAAATAATCAAACTAAATCAT
7530662 ATTTAATGCCTCATA
66 ATTTAATGCCTCATA
7530677 ATACTATATATATATATATATATATA
1 ATA-TATATATATATATATATATATA
7530703 AACAATTCAT
Statistics
Matches: 105, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
80 83 0.79
81 22 0.21
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.41
Consensus pattern (80 bp):
ATATATATATATATATATATATATATATATATATTGTAGATTGACAAATAATCAAACTAAATCAT
ATTTAATGCCTCATA
Found at i:7535385 original size:16 final size:16
Alignment explanation
Indices: 7535364--7535395 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7535354 AGGTTACAAA
7535364 GAGAAAAAGGGAAAAG
1 GAGAAAAAGGGAAAAG
*
7535380 GAGAAAAATGGAAAAG
1 GAGAAAAAGGGAAAAG
7535396 AATGCGGCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.34, T:0.03
Consensus pattern (16 bp):
GAGAAAAAGGGAAAAG
Found at i:7536191 original size:6 final size:6
Alignment explanation
Indices: 7536158--7536202 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
7536148 GGTAGAGACC
7536158 AAAA-T AAAA-T AAAA-T AAAATT CAAAATT AAAATT AAAATT AAAAT
1 AAAATT AAAATT AAAATT AAAATT -AAAATT AAAATT AAAATT AAAAT
7536203 GCATAGAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
5 14 0.37
6 18 0.47
7 6 0.16
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (6 bp):
AAAATT
Found at i:7537329 original size:14 final size:13
Alignment explanation
Indices: 7537301--7537362 Score: 60
Period size: 12 Copynumber: 4.9 Consensus size: 13
7537291 TATTTTTTTG
7537301 TAATAATA-ATAA
1 TAATAATATATAA
7537313 TAATAATATACTAA
1 TAATAATATA-TAA
7537327 TAATAATAT-T-A
1 TAATAATATATAA
* *
7537338 TTATTATCATATAA
1 TAATAAT-ATATAA
7537352 TAAT-ATATATA
1 TAATAATATATA
7537363 GAAACAGACA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
11 6 0.14
12 16 0.38
13 4 0.10
14 16 0.38
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (13 bp):
TAATAATATATAA
Found at i:7537354 original size:3 final size:3
Alignment explanation
Indices: 7537301--7537334 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
7537291 TATTTTTTTG
*
7537301 TAA TAA TAA TAA TAA TAA T-A TAC TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7537335 TTATTATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:7537693 original size:42 final size:42
Alignment explanation
Indices: 7537642--7537723 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
7537632 AAGGACTTAT
*
7537642 CATCTTGCTCGAAAGACTAACAGATGACCCGAAGGATTTAAG
1 CATCATGCTCGAAAGACTAACAGATGACCCGAAGGATTTAAG
7537684 CATCATGCTCGAAAGACTAACAGATGACCCGAAGGATTTA
1 CATCATGCTCGAAAGACTAACAGATGACCCGAAGGATTTA
7537724 CAAATTCGTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (42 bp):
CATCATGCTCGAAAGACTAACAGATGACCCGAAGGATTTAAG
Done.