Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10629029
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 38 of 51
Found at i:7753637 original size:33 final size:33
Alignment explanation
Indices: 7753578--7753641 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
7753568 TTGATGTCGT
* * *
7753578 CGCCGCCACCGTCACCTGGTTTTATGACCCCGC
1 CGCCACCACCGTCACCAGGTTATATGACCCCGC
7753611 CGCCACCACCGTCA-CAGAGTTATATGACCCC
1 CGCCACCACCGTCACCAG-GTTATATGACCCC
7753642 TCATGGAGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 2 0.07
33 25 0.93
ACGTcount: A:0.19, C:0.44, G:0.19, T:0.19
Consensus pattern (33 bp):
CGCCACCACCGTCACCAGGTTATATGACCCCGC
Found at i:7754266 original size:21 final size:21
Alignment explanation
Indices: 7754242--7754287 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
7754232 CTCACGAAAC
*
7754242 GGTTCTTCTGGTAGAGATGAT
1 GGTTCTTCCGGTAGAGATGAT
*
7754263 GGTTCTTCCGGTGGAGATGAT
1 GGTTCTTCCGGTAGAGATGAT
7754284 GGTT
1 GGTT
7754288 TCTCCATACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.15, C:0.11, G:0.37, T:0.37
Consensus pattern (21 bp):
GGTTCTTCCGGTAGAGATGAT
Found at i:7761464 original size:18 final size:17
Alignment explanation
Indices: 7761443--7761477 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
7761433 CTGAGCTTTC
7761443 AAAATTGAAAAATGAAAA
1 AAAATTGAAAAAT-AAAA
7761461 AAAATTGAAAAATAAAA
1 AAAATTGAAAAATAAAA
7761478 TTTTGTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (17 bp):
AAAATTGAAAAATAAAA
Found at i:7766355 original size:2 final size:2
Alignment explanation
Indices: 7766348--7766378 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7766338 TTTCGTAAAT
7766348 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7766379 GTAGATTGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7775518 original size:38 final size:38
Alignment explanation
Indices: 7775462--7776556 Score: 1255
Period size: 38 Copynumber: 28.3 Consensus size: 38
7775452 AATCAATCTT
* * * * *
7775462 TCTTAGTTATCCTTGACTTTCTAGTAAAGAGAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* *
7775500 TCTTTGTTATTCTTGACTTCCTCATAAAGAGAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
*
7775538 TCTTTTTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* *
7775576 TATTTGTTATTCTTGACTTCCTTGTG-AGAGAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* * *
7775613 TCTTTGTTATTCCTGACTCCCTCGTGAAGAGGAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* *
7775651 TCTTTCAATGTTATTATTGATTTCCTCGTGAAGAGAAGTCAA
1 TC-TT---TGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* *
7775693 TCTTTGTTATTGTTGACTTTCTCGTGAAGAGAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* * *
7775731 TCTTT-TTATTCTTGACTTCCTCATGAAGAGTAGCCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* * * *
7775768 TCTTTTTTATTTTTAACTTCCTCGTGAAGACAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* * * * *
7775806 TCTTTTTTTATTCTTGAC-TCTCTCATGAATAGGAGTCAG
1 TC-TTTGTTATTCTTGACTTC-CTCGTGAAGAGAAGTCAA
* *
7775845 TCTTTCAATGTTATTCTTAACTTCCTCGTGAAGTGAAGTCAA
1 TC-TT---TGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* * *
7775887 TATTTGTTATTCTTGACTTCCTCATTAAGAGAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
*
7775925 TGGTTT-TTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
1 T-CTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* *
7775963 TCTTTGTTATTCTTGACTTCCTCTTGAAAAGAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* * ** *
7776001 ACTTTGTTATTCTAT-ACTCCCTCACGAAGAGGAGTCAA
1 TCTTTGTTATTCT-TGACTTCCTCGTGAAGAGAAGTCAA
*
7776039 TCTTTTAATGTTATTCTTGACTTCCTCGTGAAGAGAAGACAA
1 TC--TT--TGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
** *
7776081 TCTTTGTTATTCACGACTTCCTCGTGAAGAGAAGTTAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
7776119 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* * *
7776157 TCTTTGTTATTCTTGACTTCCTCGTGAAGATAAATCAG
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* * ** * *
7776195 TCTTTGTTATTCCTGACTCCCTCACGAAGAGGAGTTAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* *
7776233 TCTTTCAATGTTATTCTTGACTTCCTCGTAAAGAGAAGTCAG
1 TC-TT---TGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* * *
7776275 TCTTTCTTATTCTTGACTTCCTCTTGAAGATAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
*
7776313 TCTTTGTTATTCTTGACTTCCTCGTGAAGACAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* ** * * * *
7776351 TCTTTTTTATTGGTGACTCCCTCGCGAAAATAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* *
7776389 TCTTTCAATTTTATTCTTGACTTCCTCGTGAAGAGAAGTTAA
1 TC-TT---TGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
* * * *
7776431 TCTTTGTTATTCTTGACTTCCTCATGAAAATAAGTAAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
*
7776469 TCTTTGTTATTCTTGACTTCCTCGTGAAGACAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
*
7776507 TCTTTGTTATTATTGACTTCCTCGTGAAGAGAAGTCAA
1 TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
7776545 TCTTTGTTATTC
1 TCTTTGTTATTC
7776557 CTATTGATTT
Statistics
Matches: 896, Mismatches: 133, Indels: 56
0.83 0.12 0.05
Matches are distributed among these distances:
37 68 0.08
38 630 0.70
39 41 0.05
40 4 0.00
41 9 0.01
42 142 0.16
43 2 0.00
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (38 bp):
TCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAA
Found at i:7775896 original size:194 final size:194
Alignment explanation
Indices: 7775431--7776850 Score: 1449
Period size: 194 Copynumber: 7.4 Consensus size: 194
7775421 GAAGCTTCAA
*** * * * * * *
7775431 CTTGACTCCCTTGCGAAGAGGAATCAATCTTTC-TTAGTTATCCTTGACTTTCTAGTAAAGAGAA
1 CTTGACTCCCTCATGAAGAGGAGTCAATCTTTCAAT-GTTATTCTTGACTTCCTCGTGAAGAGAA
* * *
7775495 GTCAATCTTTGTTATTCTTGACTTCCTCATAAAGAGAAGTCAATCTTTTTTATTCTTGACTTCCT
65 GTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCT
* *
7775560 CGTGAAGAGAAGTCAATATTTGTTATTCTTGACTTCCTTGTG-AGAGAAGTCAATCTTTGTTATT
130 CGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATT
* * * *
7775624 CCTGACTCCCTCGTGAAGAGGAGTCAATCTTTCAATGTTATTATTGATTTCCTCGTGAAGAGAAG
1 CTTGACTCCCTCATGAAGAGGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* *
7775689 TCAATCTTTGTTATTGTTGACTTTCTCGTGAAGAGAAGTCAATCTTT-TTATTCTTGACTTCCTC
66 TCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTC
* * * * * * * *
7775753 ATGAAGAGTAGCCAATCTTTTTTATTTTTAACTTCCTCGTGAAGACAAGTCAATCTTTTTTTATT
131 GTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATC-TTTGTTATT
* * * * *
7775818 CTTGACTCTCTCATGAATAGGAGTCAGTCTTTCAATGTTATTCTTAACTTCCTCGTGAAGTGAAG
1 CTTGACTCCCTCATGAAGAGGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* * * *
7775883 TCAATATTTGTTATTCTTGACTTCCTCATTAAGAGAAGTCAATGGTTT-TTATTCTTGACTTCCT
66 TCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAAT-CTTTGTTATTCTTGACTTCCT
* * *
7775947 CGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCTTGAAAAGAAGTCAAACTTTGTTATT
130 CGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATT
* *
7776012 CTAT-ACTCCCTCACGAAGAGGAGTCAATCTTTTAATGTTATTCTTGACTTCCTCGTGAAGAGAA
1 CT-TGACTCCCTCATGAAGAGGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGAA
* ** *
7776076 GACAATCTTTGTTATTCACGACTTCCTCGTGAAGAGAAGTTAATCTTTGTTATTCTTGACTTCCT
65 GTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCT
* * *
7776141 CGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGATAAATCAGTCTTTGTTATT
130 CGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATT
* * * *
7776206 CCTGACTCCCTCACGAAGAGGAGTTAATCTTTCAATGTTATTCTTGACTTCCTCGTAAAGAGAAG
1 CTTGACTCCCTCATGAAGAGGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* * * *
7776271 TCAGTCTTTCTTATTCTTGACTTCCTCTTGAAGATAAGTCAATCTTTGTTATTCTTGACTTCCTC
66 TCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTC
* * ** * * * * *
7776336 GTGAAGACAAGTCAATCTTTTTTATTGGTGACTCCCTCGCGAAAATAAGTCAATCTTTCAATTTT
131 GTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATC-TT---TGTT
7776401 ATT
192 ATT
* * * * * * *
7776404 CTTGACTTCCTCGTGAAGAGAAGTTAATC-TT---TGTTATTCTTGACTTCCTCATGAAAATAAG
1 CTTGACTCCCTCATGAAGAGGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* * *
7776465 TAAATCTTTGTTATTCTTGACTTCCTCGTGAAGACAAGTCAATCTTTGTTATTATTGACTTCCTC
66 TCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTC
* ** ** * *
7776530 GTGAAGAGAAGTCAATCTTTGTTATTCCT-A-TTGAT--T-TTGA-AA-T---TTTTTATTGATT
131 GTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTT-A-T
7776585 T
194 T
* *** * * * * * * ** * * *
7776586 ACTTGATTTGTTTACTGTAG-GTGA-T-AAT-ATGCACT-TGA--GATGACGGTCCCTCTTGAAC
1 -CTTGACTCCCTCA-TGAAGAG-GAGTCAATCTTTCAATGTTATTCTTGAC--TTCCTCGTGAAG
* * * *
7776644 AGAAGTCAATCTTTGTTTTTCTTGA-TTCCCTCGTGAAGAGGAGTCAATTTTTCAATGTTATCCT
61 AGAAGTCAATCTTTGTTATTCTTGACTT-CCTCGTGAAGAGAAGTCAA-TCTT---TGTTATTCT
* * * * *
7776708 TCATTTCCTAGTGAAGAGAAGTCAAT-TTATGTTATTCTTGACTTCCTCTTGAAAAGAAGTCAAT
121 TGACTTCCTCGTGAAGAGAAGTCAATCTT-TGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAAT
7776772 CTTTGTTATT
185 CTTTGTTATT
* * * *
7776782 CTTGACTCCATCAT-AAGAGGAGTCAATCTTTCAATGTTATTCTCGATTTTCTCGTGAAGAGAAG
1 CTTGACTCCCTCATGAAGAGGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGAAG
7776846 TCAAT
66 TCAAT
7776851 ATTTCAGTAT
Statistics
Matches: 1009, Mismatches: 173, Indels: 86
0.80 0.14 0.07
Matches are distributed among these distances:
180 3 0.00
181 1 0.00
182 10 0.01
183 14 0.01
184 56 0.06
185 4 0.00
187 3 0.00
188 41 0.04
189 2 0.00
190 3 0.00
192 53 0.05
193 117 0.12
194 555 0.55
195 80 0.08
196 6 0.01
197 23 0.02
198 36 0.04
199 2 0.00
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (194 bp):
CTTGACTCCCTCATGAAGAGGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGAAG
TCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTC
GTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATT
Found at i:7776073 original size:156 final size:152
Alignment explanation
Indices: 7775467--7776556 Score: 1213
Period size: 156 Copynumber: 7.0 Consensus size: 152
7775457 ATCTTTCTTA
* * * *
7775467 GTTATCCTTGACTTTCTAGTAAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCAT-AAAGAG
1 GTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCATGAAA-AG
* *
7775531 AAGTCAATCTTTTTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATATTTGTTATTCTTGACTTC
65 AAGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTC
* *
7775596 CTTGTG-AGAGAAGTCAATCTTT
130 CTCGTGAAGAGAAGTCAATTTTT
* * * * * *
7775618 GTTATTCCTGACTCCCTCGTGAAGAGGAGTCAATCTTTCAATGTTATTATTGATTTCCTCGTGAA
1 GTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATC-TT---TGTTATTCTTGACTTCCTCATGAA
* * *
7775683 GAGAAGTCAATCTTTGTTATTGTTGACTTTCTCGTGAAGAGAAGTCAATCTTT-TTATTCTTGAC
62 AAGAAGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGAC
* * *
7775747 TTCCTCATGAAGAGTAGCCAATCTTTT
127 TTCCTCGTGAAGAGAAGTCAAT-TTTT
* * * * *
7775774 -TTATTTTTAACTTCCTCGTGAAGACAAGTCAATCTTTTTTTATTCTTGAC-TCTCTCATGAATA
1 GTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATC-TTTGTTATTCTTGACTTC-CTCATGAAAA
* * * * *
7775837 GGAGTCAGTCTTTCAATGTTATTCTTAACTTCCTCGTGAAGTGAAGTCAATATTTGTTATTCTTG
64 GAAGTCAATC-TT---TGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTG
* * *
7775902 ACTTCCTCATTAAGAGAAGTCAATGGTTT
125 ACTTCCTCGTGAAGAGAAGTCAAT-TTTT
*
7775931 -TTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCTTGAAAAGA
1 GTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCATGAAAAGA
* * ** *
7775995 AGTCAAACTTTGTTATTCTAT-ACTCCCTCACGAAGAGGAGTCAATCTTTTAATGTTATTCTTGA
66 AGTCAATCTTTGTTATTCT-TGACTTCCTCGTGAAGAGAAGTCAATC--TT--TGTTATTCTTGA
* *
7776059 CTTCCTCGTGAAGAGAAGACAATCTTT
126 CTTCCTCGTGAAGAGAAGTCAATTTTT
** * * *
7776086 GTTATTCACGACTTCCTCGTGAAGAGAAGTTAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGA
1 GTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCATGAAAAGA
* * * * *
7776151 AGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGATAAATCAGTCTTTGTTATTCCTGACTCCC
66 AGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCC
** * *
7776216 TCACGAAGAGGAGTTAATCTTTCAAT
131 TCGTGAAGAGAAGTCAAT-TTT---T
* * * * * *
7776242 GTTATTCTTGACTTCCTCGTAAAGAGAAGTCAGTCTTTCTTATTCTTGACTTCCTCTTGAAGATA
1 GTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCATGAAAAGA
* * ** *
7776307 AGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGACAAGTCAATCTTTTTTATTGGTGACTCCC
66 AGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCC
* * *
7776372 TCGCGAAAATAAGTCAATCTTTCAAT
131 TCGTGAAGAGAAGTCAAT-TTT---T
* * *
7776398 TTTATTCTTGACTTCCTCGTGAAGAGAAGTTAATCTTTGTTATTCTTGACTTCCTCATGAAAATA
1 GTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCATGAAAAGA
* * *
7776463 AGTAAATCTTTGTTATTCTTGACTTCCTCGTGAAGACAAGTCAATCTTTGTTATTATTGACTTCC
66 AGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCC
*
7776528 TCGTGAAGAGAAGTCAATCTTT
131 TCGTGAAGAGAAGTCAATTTTT
7776550 GTTATTC
1 GTTATTC
7776557 CTATTGATTT
Statistics
Matches: 795, Mismatches: 119, Indels: 49
0.83 0.12 0.05
Matches are distributed among these distances:
151 30 0.04
152 91 0.11
153 5 0.01
154 22 0.03
155 115 0.14
156 466 0.59
157 66 0.08
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (152 bp):
GTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCCTCATGAAAAGA
AGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTTCC
TCGTGAAGAGAAGTCAATTTTT
Found at i:7776689 original size:38 final size:38
Alignment explanation
Indices: 7776632--7776850 Score: 165
Period size: 38 Copynumber: 5.6 Consensus size: 38
7776622 GAGATGACGG
* * *
7776632 TCCCTCTTGAACAGAAGTCAATCTTTGTTTTTCTTGAT
1 TCCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGAT
* * * *
7776670 TCCCTCGTGAAGAGGAGTCAATTTTTCAATGTTATCCTTCAT
1 TCCCTCGTGAAGAGAAGTCAA-TCTT---TGTTATTCTTGAT
* *
7776712 TTCCTAGTGAAGAGAAGTCAAT-TTATGTTATTCTTGACT
1 TCCCTCGTGAAGAGAAGTCAATCTT-TGTTATTCTTGA-T
* * *
7776751 T-CCTCTTGAAAAGAAGTCAATCTTTGTTATTCTTGAC
1 TCCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGAT
* * * *
7776788 TCCATCAT-AAGAGGAGTCAATCTTTCAATGTTATTCTCGAT
1 TCCCTCGTGAAGAGAAGTCAATC-TT---TGTTATTCTTGAT
**
7776829 TTTCTCGTGAAGAGAAGTCAAT
1 TCCCTCGTGAAGAGAAGTCAAT
7776851 ATTTCAGTAT
Statistics
Matches: 142, Mismatches: 27, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
37 13 0.09
38 64 0.45
39 7 0.05
40 2 0.01
41 16 0.11
42 40 0.28
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (38 bp):
TCCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGAT
Found at i:7776842 original size:117 final size:118
Alignment explanation
Indices: 7776634--7776850 Score: 330
Period size: 117 Copynumber: 1.8 Consensus size: 118
7776624 GATGACGGTC
* * * * * *
7776634 CCTCTTGAACAGAAGTCAATCTTTGTTTTTCTTGATTCCCTCGTGAAGAGGAGTCAATTTTTCAA
1 CCTCTTGAAAAGAAGTCAATCTTTGTTATTCTTGACTCCATCATGAAGAGGAGTCAATCTTTCAA
7776699 TGTTATCCTTCATTTCCTAGTGAAGAGAAGTCAATTTATGTTATTCTTGACTT
66 TGTTATCCTTCATTTCCTAGTGAAGAGAAGTCAATTTATGTTATTCTTGACTT
7776752 CCTCTTGAAAAGAAGTCAATCTTTGTTATTCTTGACTCCATCAT-AAGAGGAGTCAATCTTTCAA
1 CCTCTTGAAAAGAAGTCAATCTTTGTTATTCTTGACTCCATCATGAAGAGGAGTCAATCTTTCAA
* * *
7776816 TGTTATTC-TCGATTTTCTCGTGAAGAGAAGTCAAT
66 TGTTATCCTTC-ATTTCCTAGTGAAGAGAAGTCAAT
7776851 ATTTCAGTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
116 2 0.02
117 48 0.54
118 39 0.44
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (118 bp):
CCTCTTGAAAAGAAGTCAATCTTTGTTATTCTTGACTCCATCATGAAGAGGAGTCAATCTTTCAA
TGTTATCCTTCATTTCCTAGTGAAGAGAAGTCAATTTATGTTATTCTTGACTT
Found at i:7776966 original size:45 final size:45
Alignment explanation
Indices: 7776796--7777183 Score: 317
Period size: 45 Copynumber: 8.7 Consensus size: 45
7776786 ACTCCATCAT
* * * * *
7776796 AAGAGGAGTCAATCTTTCAATG-T-T-ATTCTCGATTTTCTCGTG
1 AAGAGAAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTG
* * * * *
7776838 AAGAGAAGTCAATATTTCAGTATTGTCATTCATGACTTTTTCGTG
1 AAGAGAAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTG
* * * * ** *
7776883 ACGGGAATTCAATTTTTTAGTGTT-T-ACTTCCTCAACTTTCTCGAG
1 AAGAGAAGTCAATCTTTTAGTGTTGTCA-TT-CTTGACTTTCTCGTG
* * *
7776928 AAGAGAAGTCAATATTTTAGTATTATCATTCTTGACTTTCTCGTG
1 AAGAGAAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTG
* * **
7776973 AAGAGGAGTCAATCTTTTAGGGTTG-C-TTCCTTGACTTTCTCACG
1 AAGAGAAGTCAATCTTTTAGTGTTGTCATT-CTTGACTTTCTCGTG
* * * *
7777017 AAGAGGAGTCAATATTTTAGTATTGTCTTTCTTGACTTTCTC-TCG
1 AAGAGAAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGT-G
* * *
7777062 AAGATG-AGTCGATCTTTTAGTGTTGTCCTACTTGACTTTCTCGTG
1 AAGA-GAAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTG
* * * * * *
7777107 AAGATAAGTCAACCTTTTAGTGGTGTTATTCTTGACTTTCTTGGG
1 AAGAGAAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTG
* *
7777152 AAGAGAAGTCAACCTTTTAGTGATGTCATTCT
1 AAGAGAAGTCAATCTTTTAGTGTTGTCATTCT
7777184 CAACTTGACT
Statistics
Matches: 277, Mismatches: 55, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
42 18 0.06
43 4 0.01
44 40 0.14
45 207 0.75
46 7 0.03
47 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.41
Consensus pattern (45 bp):
AAGAGAAGTCAATCTTTTAGTGTTGTCATTCTTGACTTTCTCGTG
Found at i:7776985 original size:90 final size:90
Alignment explanation
Indices: 7776796--7777173 Score: 367
Period size: 90 Copynumber: 4.2 Consensus size: 90
7776786 ACTCCATCAT
* * * * *
7776796 AAGAGGAGTCAATCTTTCAATG-TTA-TT-CTCGATTTTCTCGTGAAGAGAAGTCAATATTTCAG
1 AAGAGGAGTCAATCTTTTAGTGTTTACTTCCTCGACTTTCTCGAGAAGAGAAGTCAATATTTTAG
* *
7776858 TATTGTCATTCATGACTTTTTCGTG
66 TATTGTCATTCTTGACTTTCTCGTG
* * * *
7776883 ACG-GGAATTCAATTTTTTAGTGTTTACTTCCTCAACTTTCTCGAGAAGAGAAGTCAATATTTTA
1 AAGAGG-AGTCAATCTTTTAGTGTTTACTTCCTCGACTTTCTCGAGAAGAGAAGTCAATATTTTA
*
7776947 GTATTATCATTCTTGACTTTCTCGTG
65 GTATTGTCATTCTTGACTTTCTCGTG
* * * *
7776973 AAGAGGAGTCAATCTTTTAG-GGTTGCTTCCTTGACTTTCTC-ACGAAGAGGAGTCAATATTTTA
1 AAGAGGAGTCAATCTTTTAGTGTTTACTTCCTCGACTTTCTCGA-GAAGAGAAGTCAATATTTTA
*
7777036 GTATTGTCTTTCTTGACTTTCTC-TCG
65 GTATTGTCATTCTTGACTTTCTCGT-G
* * * * * * * **
7777062 AAGATGAGTCGATCTTTTAGTGTTGT-CCTACTTGACTTTCTCGTGAAGATAAGTCAACCTTTTA
1 AAGAGGAGTCAATCTTTTAGTGTT-TACTTCCTCGACTTTCTCGAGAAGAGAAGTCAATATTTTA
** * * *
7777126 GTGGTGTTATTCTTGACTTTCTTGGG
65 GTATTGTCATTCTTGACTTTCTCGTG
* *
7777152 AAGAGAAGTCAACCTTTTAGTG
1 AAGAGGAGTCAATCTTTTAGTG
7777174 ATGTCATTCT
Statistics
Matches: 238, Mismatches: 42, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
86 2 0.01
87 14 0.06
88 5 0.02
89 78 0.33
90 136 0.57
91 3 0.01
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.40
Consensus pattern (90 bp):
AAGAGGAGTCAATCTTTTAGTGTTTACTTCCTCGACTTTCTCGAGAAGAGAAGTCAATATTTTAG
TATTGTCATTCTTGACTTTCTCGTG
Found at i:7777212 original size:50 final size:45
Alignment explanation
Indices: 7776917--7777213 Score: 133
Period size: 45 Copynumber: 6.5 Consensus size: 45
7776907 TACTTCCTCA
* * ** *
7776917 ACTTTCTCGAGAAGAGAAGTCAATATTTTAGT-ATTATCATT-CTTG
1 ACTTTCTCG-GGAGATAAGTCAACCTTTTAGTGA-TGTCATTACTTG
* ** * * * *
7776962 ACTTTCTCGTGAAGAGGAGTCAATCTTTTAGGGTTG-C-TTCCTTG
1 ACTTTCTCG-GGAGATAAGTCAACCTTTTAGTGATGTCATTACTTG
* * ** ** *
7777006 ACTTTCTCACGAAGAGGAGTCAATATTTTAGT-ATTGTC-TTTCTTG
1 ACTTTCTC-GGGAGATAAGTCAACCTTTTAGTGA-TGTCATTACTTG
* * * * * * *
7777051 ACTTTCTCTCGAAGATGAGTCGATCTTTTAGTGTTGTC-CTACTTG
1 ACTTTCTC-GGGAGATAAGTCAACCTTTTAGTGATGTCATTACTTG
* * *
7777096 ACTTTCTCGTGAAGATAAGTCAACCTTTTAGTGGTGTTATT-CTTG
1 ACTTTCTCG-GGAGATAAGTCAACCTTTTAGTGATGTCATTACTTG
* *
7777141 ACTTTCTTGGGAAGAGAAGTCAACCTTTTAGTGATGTCATTCTCAACTTG
1 ACTTTCTCGGG-AGATAAGTCAACCTTTTAGTGATGTCA-T-T--ACTTG
*
7777191 ACTTTCTCGCGGAGATTAGTCAA
1 ACTTTCTCG-GGAGATAAGTCAA
7777214 TTTTTCAGTA
Statistics
Matches: 204, Mismatches: 33, Indels: 25
0.78 0.13 0.10
Matches are distributed among these distances:
43 2 0.01
44 36 0.18
45 140 0.69
46 2 0.01
47 1 0.00
50 21 0.10
51 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (45 bp):
ACTTTCTCGGGAGATAAGTCAACCTTTTAGTGATGTCATTACTTG
Found at i:7782435 original size:23 final size:23
Alignment explanation
Indices: 7782394--7782439 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
7782384 GAATCATTTA
*
7782394 AAAAAGTATTTTTATAATATTAT
1 AAAAAGTATTTTTAAAATATTAT
7782417 AAAAA-TATTTATTAAAATATTAT
1 AAAAAGTATTT-TTAAAATATTAT
7782440 TTATTTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
AAAAAGTATTTTTAAAATATTAT
Found at i:7782512 original size:26 final size:27
Alignment explanation
Indices: 7782446--7782513 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 27
7782436 TTATTTATTT
*
7782446 ATTTGAAAT-AAT-AATAATAATAATA
1 ATTTAAAATAAATAAATAATAATAATA
*
7782471 ATTTAAAATAACTAAATAAT-ATAAT-
1 ATTTAAAATAAATAAATAATAATAATA
*
7782496 TTTTAAAATTAAATAAAT
1 ATTTAAAA-TAAATAAAT
7782514 GTTTTTATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
25 15 0.42
26 15 0.42
27 6 0.17
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (27 bp):
ATTTAAAATAAATAAATAATAATAATA
Found at i:7782542 original size:18 final size:19
Alignment explanation
Indices: 7782515--7782552 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
7782505 TAAATAAATG
7782515 TTTTTATAAT-ATTATAATA
1 TTTTTATAATGATT-TAATA
7782534 TTTTT-TAATGATTTAATA
1 TTTTTATAATGATTTAATA
7782552 T
1 T
7782553 AAATTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (19 bp):
TTTTTATAATGATTTAATA
Found at i:7782563 original size:22 final size:23
Alignment explanation
Indices: 7782527--7782569 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
7782517 TTTATAATAT
*
7782527 TATAATATTTTTTAATGATTTAA
1 TATAATATTATTTAATGATTTAA
*
7782550 TATAA-ATTATTTAATTATTT
1 TATAATATTATTTAATGATTT
7782570 TTTATTTCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
TATAATATTATTTAATGATTTAA
Found at i:7787497 original size:35 final size:35
Alignment explanation
Indices: 7787458--7787528 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
7787448 CACAAATATA
*
7787458 TATGTGTATTAAATCAATTAATCCATTACTCCTTG
1 TATGTGTATTAAATCAAGTAATCCATTACTCCTTG
7787493 TATGTGTATTAAATCAAGTAATCCATTACTCCTTG
1 TATGTGTATTAAATCAAGTAATCCATTACTCCTTG
7787528 T
1 T
7787529 GGCAACCTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42
Consensus pattern (35 bp):
TATGTGTATTAAATCAAGTAATCCATTACTCCTTG
Found at i:7789363 original size:28 final size:28
Alignment explanation
Indices: 7789331--7789390 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
7789321 TTATTATTCT
*
7789331 TAAATGTCATTTATGATGTTACATCAAA
1 TAAATGTCATTTATGATGCTACATCAAA
7789359 TAAATGTCATTTATGATGCTACATCAAA
1 TAAATGTCATTTATGATGCTACATCAAA
7789387 TAAA
1 TAAA
7789391 CATAATATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.37
Consensus pattern (28 bp):
TAAATGTCATTTATGATGCTACATCAAA
Found at i:7789596 original size:27 final size:27
Alignment explanation
Indices: 7789565--7789639 Score: 123
Period size: 27 Copynumber: 2.8 Consensus size: 27
7789555 TGTCAACTTC
* *
7789565 ACTTGCTACGACAATGTCATTAATTTT
1 ACTTGCCACGACAACGTCATTAATTTT
7789592 ACTTGCCACGACAACGTCATTAATTTT
1 ACTTGCCACGACAACGTCATTAATTTT
*
7789619 ACTTTCCACGACAACGTCATT
1 ACTTGCCACGACAACGTCATT
7789640 CACCATCAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (27 bp):
ACTTGCCACGACAACGTCATTAATTTT
Found at i:7789845 original size:37 final size:36
Alignment explanation
Indices: 7789741--7789846 Score: 169
Period size: 36 Copynumber: 2.9 Consensus size: 36
7789731 ATTAATCTTC
7789741 AATAAG-AAAATACCCAAATTTCTTATGAAACCTTT
1 AATAAGAAAAATACCCAAATTTCTTATGAAACCTTT
* * *
7789776 AATAAGAAAAGTACTCAAGTTTCTTATGAAACCTTT
1 AATAAGAAAAATACCCAAATTTCTTATGAAACCTTT
7789812 AATAAGAAAAAATACCCAAATTTCTTATGAAACCT
1 AATAAG-AAAAATACCCAAATTTCTTATGAAACCT
7789847 AACTTGGTGA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
35 6 0.10
36 32 0.51
37 25 0.40
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.30
Consensus pattern (36 bp):
AATAAGAAAAATACCCAAATTTCTTATGAAACCTTT
Found at i:7790297 original size:17 final size:17
Alignment explanation
Indices: 7790275--7790309 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7790265 TTTTAAATCA
* *
7790275 CAAAATAATCGGAAGGC
1 CAAAATAACCGAAAGGC
7790292 CAAAATAACCGAAAGGC
1 CAAAATAACCGAAAGGC
7790309 C
1 C
7790310 TTTACTTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.49, C:0.23, G:0.20, T:0.09
Consensus pattern (17 bp):
CAAAATAACCGAAAGGC
Found at i:7792523 original size:15 final size:15
Alignment explanation
Indices: 7792503--7792532 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7792493 GAACCAGAGG
7792503 GAAAATGAAGAGAAA
1 GAAAATGAAGAGAAA
7792518 GAAAATGAAGAGAAA
1 GAAAATGAAGAGAAA
7792533 CCCCAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.07
Consensus pattern (15 bp):
GAAAATGAAGAGAAA
Found at i:7798003 original size:2 final size:2
Alignment explanation
Indices: 7797996--7798024 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7797986 TATACCCAGA
7797996 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7798025 CACACACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7799549 original size:37 final size:37
Alignment explanation
Indices: 7799421--7799565 Score: 141
Period size: 37 Copynumber: 3.9 Consensus size: 37
7799411 GTTTCTCTCG
* * *
7799421 AAACAAAGTGTCGTCTCGCTAGAGA-AAATTTTTCTTAA
1 AAACAAA-TTTCGTCTCGCTTGAGACAATTTTTTC-TAA
* * * *
7799459 AAACAAATGTT-GTCTCACTTGAGACAGTTATCTCTAA
1 AAACAAAT-TTCGTCTCGCTTGAGACAATTTTTTCTAA
** *
7799496 AAACAAATTTTATCTCGCTTGAGACAATTTTTTCTCA
1 AAACAAATTTCGTCTCGCTTGAGACAATTTTTTCTAA
* *
7799533 AAACAAATTTCGTCTCGGTGGAGACAATTTTTT
1 AAACAAATTTCGTCTCGCTTGAGACAATTTTTT
7799566 ATTTAAAACA
Statistics
Matches: 87, Mismatches: 17, Indels: 7
0.78 0.15 0.06
Matches are distributed among these distances:
36 2 0.02
37 72 0.83
38 13 0.15
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (37 bp):
AAACAAATTTCGTCTCGCTTGAGACAATTTTTTCTAA
Found at i:7799942 original size:188 final size:188
Alignment explanation
Indices: 7799612--7800248 Score: 755
Period size: 197 Copynumber: 3.3 Consensus size: 188
7799602 ACAAAATAAA
* * * * *
7799612 AAAAATCTTTGTGTTTGTTTCCTTTGAAACAAAGATTTGTCTCTTTTGAGACAGTTTCTCTTAAA
1 AAAAATATTTGAGTTTGTTTCCCTTGAAAC-AAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAA
* *
7799677 AAAAATCGTTGAGTTTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAA
65 AAAAATCTTTGAGTATGTTTCCCTTGAAA-AAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAA
*
7799742 AAATCTTTGAGTATGTTTCCCTTGATATAAAG-TTT-TCTCTCTTGAGACAGTTTCTCTTG
129 AAATCTTTGAGTATGTTTCCCTTGA-ACAAAGTTTTATCTCTCTTGAGACAGTTTCTCTTG
7799801 AAAAATATTTGAGTTTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTT-AA
1 AAAAATATTTGAGTTTGTTTCCCTTGAAAC-AAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAA
* * *
7799865 AACAATCTTTGAGTATGTTTCCCTTGAAATAAAGTTTTGTCTTTCCTGAGACAGTTTCTCTTGAA
65 AAAAATCTTTGAGTATGTTTCCCTTGAAA-AAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAA
* *
7799930 AATTCTTTGAGTATGTTTCCCTTGAACAAAGTTTTATCTCTCTTGAGACAGTTTCTTTTG
129 AAATCTTTGAGTATGTTTCCCTTGAACAAAGTTTTATCTCTCTTGAGACAGTTTCTCTTG
* * * * *
7799990 AAACAAAAGTCTTTGAGTCTATTTCCCTTGAAACAAGTATTATCTCTCTTGAGACAGTTTCTCTT
1 --A-AAAA-TATTTGAGTTTGTTTCCCTTGAAACAAGTTTTGTCTCTCTTGAGACAGTTTCTCTT
* * * * *
7800055 GAAACAAAAATATTTCA-TCTGTTTCCCTTGAAACAAGTTTTGTCTCTGTTGAGACAGTTTCTCT
62 -AAA-AAAAATCTTTGAGTATGTTTCCCTTGAAAAAAGTTTTGTCTCTCTTGAGACAGTTTCTCT
* * * *
7800119 TGAAACAAAAGTCTTTGATTATGTTTCCCTTTAAGC-AAGTTTTATCTCTCTTAAGACATTTTC-
125 TG--A-AAAA-TCTTTGAGTATGTTTCCCTTGAA-CAAAGTTTTATCTCTCTTGAGACAGTTTCT
7800182 CGTTG
185 C-TTG
* * * * *
7800187 AAACATCAACCTTTGAGATTGTTTCCCTTGAAACATGTTTTTTCTCTCTTGAGACGGTTTCT
1 AAAAAT--A--TTTGAGTTTGTTTCCCTTGAAACAAGTTTTGTCTCTCTTGAGACAGTTTCT
7800249 ATTGAAACCA
Statistics
Matches: 387, Mismatches: 42, Indels: 30
0.84 0.09 0.07
Matches are distributed among these distances:
187 5 0.01
188 88 0.23
189 80 0.21
191 1 0.00
192 33 0.09
193 52 0.13
194 20 0.05
195 11 0.03
196 3 0.01
197 93 0.24
198 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.42
Consensus pattern (188 bp):
AAAAATATTTGAGTTTGTTTCCCTTGAAACAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAA
AAAATCTTTGAGTATGTTTCCCTTGAAAAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAA
ATCTTTGAGTATGTTTCCCTTGAACAAAGTTTTATCTCTCTTGAGACAGTTTCTCTTG
Found at i:7800033 original size:66 final size:64
Alignment explanation
Indices: 7799610--7800255 Score: 708
Period size: 66 Copynumber: 10.0 Consensus size: 64
7799600 AAACAAAATA
* * * * * *
7799610 AAAAAAATCTTTGTGTTTGTTTCCTTTGAAACAAAGATTTGTCTCTTTTGAGACAGTTTCTCTTA
1 AAAAAAATCTTTGAGTATGTTTCCCTTGAAAC-AAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
* *
7799675 AAAAAAATCGTTGAGTTTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
1 AAAAAAATCTTTGAGTATGTTTCCCTTGAAAC-AAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
7799740 --AAAAATCTTTGAGTATGTTTCCCTTGATATA-AAG-TTT-TCTCTCTTGAGACAGTTTCTCTT
1 AAAAAAATCTTTGAGTATGTTTCCCTTGA-A-ACAAGTTTTGTCTCTCTTGAGACAGTTTCTCTT
7799800 G
64 G
* *
7799801 --AAAAATATTTGAGTTTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTT-
1 AAAAAAATCTTTGAGTATGTTTCCCTTGAAAC-AAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
* * * *
7799863 AAAACAATCTTTGAGTATGTTTCCCTTGAAATAAAGTTTTGTCTTTCCTGAGACAGTTTCTCTTG
1 AAAAAAATCTTTGAGTATGTTTCCCTTGAAA-CAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
* * *
7799928 --AAAATTCTTTGAGTATGTTTCCCTTG-AACAAAGTTTTATCTCTCTTGAGACAGTTTCTTTTG
1 AAAAAAATCTTTGAGTATGTTTCCCTTGAAAC-AAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
* * * *
7799990 AAACAAAAGTCTTTGAGTCTATTTCCCTTGAAACAAGTATTATCTCTCTTGAGACAGTTTCTCTT
1 AAA-AAAA-TCTTTGAGTATGTTTCCCTTGAAACAAGTTTTGTCTCTCTTGAGACAGTTTCTCTT
7800055 G
64 G
* * * *
7800056 AAACAAAAATATTTCA-TCTGTTTCCCTTGAAACAAGTTTTGTCTCTGTTGAGACAGTTTCTCTT
1 -AA-AAAAATCTTTGAGTATGTTTCCCTTGAAACAAGTTTTGTCTCTCTTGAGACAGTTTCTCTT
7800120 G
64 G
* * * * * *
7800121 AAACAAAAGTCTTTGATTATGTTTCCCTTTAAGCAAGTTTTATCTCTCTTAAGACATTTTC-CGT
1 AAA-AAAA-TCTTTGAGTATGTTTCCCTTGAAACAAGTTTTGTCTCTCTTGAGACAGTTTCTC-T
7800185 TG
63 TG
* * * * * *
7800187 AAACATCAACCTTTGAG-ATTGTTTCCCTTGAAACATGTTTTTTCTCTCTTGAGACGGTTTCTAT
1 AAA-A-AAATCTTTGAGTA-TGTTTCCCTTGAAACAAGTTTTGTCTCTCTTGAGACAGTTTCTCT
7800251 TG
63 TG
7800253 AAA
1 AAA
7800256 CCATTATCCC
Statistics
Matches: 502, Mismatches: 54, Indels: 49
0.83 0.09 0.08
Matches are distributed among these distances:
59 1 0.00
60 1 0.00
61 52 0.10
62 36 0.07
63 76 0.15
64 63 0.13
65 115 0.23
66 146 0.29
67 11 0.02
68 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.42
Consensus pattern (64 bp):
AAAAAAATCTTTGAGTATGTTTCCCTTGAAACAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
Found at i:7800056 original size:36 final size:36
Alignment explanation
Indices: 7799944--7800126 Score: 117
Period size: 36 Copynumber: 5.4 Consensus size: 36
7799934 CTTTGAGTAT
*
7799944 GTTTCCCTTG-AACAAAGTTTTATCTCTCTTGAGACA
1 GTTTCCCTTGAAAC-AAGTATTATCTCTCTTGAGACA
** * *
7799980 GTTTCTTTTGAAACAA--A--A-GTCT-TTGAGTCTA
1 GTTTCCCTTGAAACAAGTATTATCTCTCTTGAGAC-A
7800011 -TTTCCCTTGAAACAAGTATTATCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAGTATTATCTCTCTTGAGACA
* * * * *
7800046 GTTTCTCTTGAAACAA-AAATAT-T-TC---A-TCT
1 GTTTCCCTTGAAACAAGTATTATCTCTCTTGAGACA
* * *
7800075 GTTTCCCTTGAAACAAGTTTTGTCTCTGTTGAGACA
1 GTTTCCCTTGAAACAAGTATTATCTCTCTTGAGACA
*
7800111 GTTTCTCTTGAAACAA
1 GTTTCCCTTGAAACAA
7800127 AAGTCTTTGA
Statistics
Matches: 108, Mismatches: 23, Indels: 32
0.66 0.14 0.20
Matches are distributed among these distances:
29 16 0.15
30 22 0.20
31 5 0.05
32 3 0.03
33 2 0.02
34 2 0.02
35 9 0.08
36 46 0.43
37 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (36 bp):
GTTTCCCTTGAAACAAGTATTATCTCTCTTGAGACA
Found at i:7803912 original size:4 final size:4
Alignment explanation
Indices: 7803903--7803931 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7803893 CTTTTGATTC
7803903 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
7803932 ATATATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:7804170 original size:26 final size:28
Alignment explanation
Indices: 7804141--7804202 Score: 69
Period size: 26 Copynumber: 2.3 Consensus size: 28
7804131 CTTCTTTTTT
7804141 TTATTTATTACTTTGG-T-TATTTAA-TA
1 TTATTTATT-CTTTGGATGTATTTAATTA
* *
7804167 TTA-TTATTTTTTGGATGTATTTAATTT
1 TTATTTATTCTTTGGATGTATTTAATTA
7804194 TTATTTATT
1 TTATTTATT
7804203 GTTATTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
24 5 0.17
25 6 0.20
26 10 0.33
27 4 0.13
28 5 0.17
ACGTcount: A:0.24, C:0.02, G:0.08, T:0.66
Consensus pattern (28 bp):
TTATTTATTCTTTGGATGTATTTAATTA
Found at i:7808560 original size:9 final size:8
Alignment explanation
Indices: 7808533--7808609 Score: 54
Period size: 9 Copynumber: 9.6 Consensus size: 8
7808523 AGATCATATC
*
7808533 AAGAACAA
1 AAGAAGAA
7808541 AA-AAGAA
1 AAGAAGAA
7808548 AAGAAGCAA
1 AAGAAG-AA
7808557 AAGAAGAA
1 AAGAAGAA
7808565 AA-AA-AA
1 AAGAAGAA
*
7808571 AAGAAAAA
1 AAGAAGAA
*
7808579 ATAGAAAAA
1 A-AGAAGAA
*
7808588 ATAGAAACAA
1 A-AG-AAGAA
7808598 AAGAA-AA
1 AAGAAGAA
7808605 AAGAA
1 AAGAA
7808610 AGAACAAAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 13
0.80 0.03 0.17
Matches are distributed among these distances:
6 4 0.07
7 17 0.28
8 14 0.23
9 21 0.34
10 5 0.08
ACGTcount: A:0.79, C:0.04, G:0.14, T:0.03
Consensus pattern (8 bp):
AAGAAGAA
Found at i:7808565 original size:17 final size:15
Alignment explanation
Indices: 7808533--7808619 Score: 65
Period size: 16 Copynumber: 5.7 Consensus size: 15
7808523 AGATCATATC
7808533 AAGAACAAAAAAGAA
1 AAGAACAAAAAAGAA
7808548 AAGAAGCAAAAGAAGAA
1 AAGAA-CAAAA-AAGAA
*
7808565 AA-AA-AAAAGAAAAA
1 AAGAACAAAA-AAGAA
*
7808579 ATAGAA-AAAATAGAA
1 A-AGAACAAAAAAGAA
* *
7808594 ACAAAAGAAAAAAG-A
1 A-AGAACAAAAAAGAA
7808609 AAGAACAAAAA
1 AAGAACAAAAA
7808620 TCAAAAAGAT
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
14 18 0.31
15 15 0.25
16 19 0.32
17 7 0.12
ACGTcount: A:0.79, C:0.05, G:0.14, T:0.02
Consensus pattern (15 bp):
AAGAACAAAAAAGAA
Found at i:7808575 original size:38 final size:39
Alignment explanation
Indices: 7808533--7808619 Score: 108
Period size: 38 Copynumber: 2.3 Consensus size: 39
7808523 AGATCATATC
* *
7808533 AAGAACAAAAAAGAAAAGA-AGCAAA-AGAAGAAAAAAAA
1 AAGAACAAAAAAGAAAAAATAG-AAACAAAAGAAAAAAAA
* *
7808571 AAGAA-AAAATAGAAAAAATAGAAACAAAAGAAAAAAGA
1 AAGAACAAAAAAGAAAAAATAGAAACAAAAGAAAAAAAA
7808609 AAGAACAAAAA
1 AAGAACAAAAA
7808620 TCAAAAAGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
37 14 0.34
38 23 0.56
39 4 0.10
ACGTcount: A:0.79, C:0.05, G:0.14, T:0.02
Consensus pattern (39 bp):
AAGAACAAAAAAGAAAAAATAGAAACAAAAGAAAAAAAA
Found at i:7809723 original size:18 final size:18
Alignment explanation
Indices: 7809696--7809731 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7809686 TTAACATGAA
*
7809696 ATATTAGGGCATTTTTGG
1 ATATTAGGGCATCTTTGG
*
7809714 ATATTGGGGCATCTTTGG
1 ATATTAGGGCATCTTTGG
7809732 GGATTCAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.08, G:0.31, T:0.42
Consensus pattern (18 bp):
ATATTAGGGCATCTTTGG
Found at i:7810373 original size:37 final size:37
Alignment explanation
Indices: 7810331--7810410 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 37
7810321 CATCTCCCCG
* * * *
7810331 TGAGACAATTTCTTTTT-GAACTAAGTTTTGTCTCTCT
1 TGAGACAATTT-TTTTTAAAACAAAATTTTGTCTCCCT
*
7810368 TGAGACAGTTTTTTTTAAAACAAAATTTTGTCTCCCT
1 TGAGACAATTTTTTTTAAAACAAAATTTTGTCTCCCT
7810405 TGAGAC
1 TGAGAC
7810411 CGTTTCTCAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 5 0.14
37 32 0.86
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (37 bp):
TGAGACAATTTTTTTTAAAACAAAATTTTGTCTCCCT
Found at i:7810426 original size:37 final size:37
Alignment explanation
Indices: 7810356--7810427 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
7810346 TTGAACTAAG
* * **
7810356 TTTTGTCTCTCTTGAGACAGTTTTTTTTAAAACAAAA
1 TTTTGTCTCCCTTGAGACAGTTTCTCATAAAACAAAA
* *
7810393 TTTTGTCTCCCTTGAGACCGTTTCTCATGAAACAA
1 TTTTGTCTCCCTTGAGACAGTTTCTCATAAAACAA
7810428 CAGATATCTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.26, C:0.19, G:0.12, T:0.42
Consensus pattern (37 bp):
TTTTGTCTCCCTTGAGACAGTTTCTCATAAAACAAAA
Found at i:7811228 original size:106 final size:106
Alignment explanation
Indices: 7811043--7811466 Score: 659
Period size: 106 Copynumber: 4.0 Consensus size: 106
7811033 GCGCTATTCA
* *
7811043 AGACAACACAAGTTCAACTTCACAACGAAGGGATGGCTGGTTGTCAAGAAACAATTTCCCAATTT
1 AGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTT
* **
7811108 CAGAGCCAATTTCAACTTTACAGCGAAGGGCATTGGACTCG
66 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCG
* ** * *
7811149 AGACAGCACAAGTTCAACTTCACAATAAAGGGACGGCTGGTTGTCAACAAACAACTTCCTAATTT
1 AGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTT
*
7811214 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCA
66 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCG
* * *
7811255 AGACAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAACAAATAAATTCCCAATTT
1 AGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTT
*
7811320 CTGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCG
66 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCG
* *
7811361 AGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAGTTC
1 AGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTT
* * * *
7811426 CAGAACCAATTTCAACTTCACGGCGGAGAATATTGGACTCG
66 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCG
7811467 GAACAATACA
Statistics
Matches: 290, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
106 290 1.00
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (106 bp):
AGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTT
CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCG
Found at i:7812179 original size:2 final size:2
Alignment explanation
Indices: 7812174--7812213 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
7812164 TATTTTACAA
7812174 AT AT AT AT -T AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7812214 TCATTATTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:7812187 original size:20 final size:21
Alignment explanation
Indices: 7812161--7812212 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
7812151 TTTCTATCAC
*
7812161 ATATATTTTACAAATATATAT
1 ATATATTATACAAATATATAT
* *
7812182 -TATATTATATATATATATAT
1 ATATATTATACAAATATATAT
7812202 ATATATATATA
1 ATATAT-TATA
7812213 TTCATTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 17 0.65
21 5 0.19
22 4 0.15
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
ATATATTATACAAATATATAT
Found at i:7813076 original size:12 final size:12
Alignment explanation
Indices: 7813059--7813085 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7813049 TTTGATTCTT
7813059 TATTTATTTATA
1 TATTTATTTATA
7813071 TATTTATTTATA
1 TATTTATTTATA
7813083 TAT
1 TAT
7813086 GTATATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TATTTATTTATA
Found at i:7813972 original size:131 final size:131
Alignment explanation
Indices: 7813734--7814102 Score: 390
Period size: 131 Copynumber: 2.8 Consensus size: 131
7813724 ATAAATGGTG
* * * *
7813734 CTCA-CACGTAGGAACCGTGTCATCCCTGGACTAGATTTCTTCATCATGTAGGAGCCGTGTCACC
1 CTCATCACGTAGGAACCGTGTCATCCC-CGACTAGATCTCCTCATCACGTAGGAGCCGTGTCACC
* * * *
7813798 CTTAGA-AAACTAGACATCCTCATCACGTAGGAACTGTGTTATCATCCCTAAATATGGCCAGTC-
65 CTTAGATAAACTAGACATCCTCATCACGTAGGAACTATGTTATCATCCATAAAGATGGCCAGACA
7813861 GT
130 GT
* * *
7813863 CATCATCACGTAGGAACCGTGTAATCTCCCGACCAGACCTCCTCATCACGTAGGAGCCGTGTCAC
1 C-TCATCACGTAGGAACCGTGTCATC-CCCGACTAGATCTCCTCATCACGTAGGAGCCGTGTCAC
* *** * * *
7813928 CCCTAGATAAAC-AGTTGTCCTCATCGCGTAGG-AGTCATGTTATCATCCATAAAGATGGCCTGA
64 CCTTAGATAAACTAGACATCCTCATCACGTAGGAACT-ATGTTATCATCCATAAAGATGGCCAGA
*
7813991 CATT
128 CAGT
** * ** *
7813995 CTCATCACGTAGGAACTATGTCATCCACCGATTAGATCTCCTCATCACAAAGGAGTCGTGTCACC
1 CTCATCACGTAGGAACCGTGTCATCC-CCGACTAGATCTCCTCATCACGTAGGAGCCGTGTCACC
* * * *
7814060 CTTAGATAGAC-AAACTTCCTCATCACGTAGGAACTGTGTTATC
65 CTTAGATAAACTAGACATCCTCATCACGTAGGAACTATGTTATC
7814103 TCCCAATTAA
Statistics
Matches: 195, Mismatches: 37, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
129 1 0.01
130 6 0.03
131 178 0.91
132 10 0.05
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (131 bp):
CTCATCACGTAGGAACCGTGTCATCCCCGACTAGATCTCCTCATCACGTAGGAGCCGTGTCACCC
TTAGATAAACTAGACATCCTCATCACGTAGGAACTATGTTATCATCCATAAAGATGGCCAGACAG
T
Found at i:7814315 original size:3 final size:3
Alignment explanation
Indices: 7814309--7814360 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
7814299 CTTAAAAAAA
7814309 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7814357 TAT T
1 TAT T
7814361 CTAATTACAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7819848 original size:2 final size:2
Alignment explanation
Indices: 7819795--7819832 Score: 67
Period size: 2 Copynumber: 18.5 Consensus size: 2
7819785 TCACTTTTCT
7819795 TA TA CTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7819833 TCTTCTTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 33 0.94
3 2 0.06
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7822876 original size:42 final size:41
Alignment explanation
Indices: 7822810--7822991 Score: 186
Period size: 42 Copynumber: 4.3 Consensus size: 41
7822800 ATTCTACTTT
**
7822810 AGAATCGAAAAGTGTGATGATTCCTTCCGTTCTACTTTAGATT
1 AGAATCG-AAAGTGTGAT-ATTCCTTCCGTTCTACTTTAGACG
*
7822853 ATAATCGAAAGTGTGATATTTCCTTCCGTTCTACTTTAGACG
1 AGAATCGAAAGTGTGATA-TTCCTTCCGTTCTACTTTAGACG
* *
7822895 AGAATCGAAAGT-TCGATGCTTCCTTCCGTTATACTTTAGACG
1 AGAATCGAAAGTGT-GAT-ATTCCTTCCGTTCTACTTTAGACG
* * * * ** * *
7822937 ATAACCAAAAGTGTTATGCCTCATTTCGTTCTACTTTAGACG
1 AGAATCGAAAGTGTGAT-ATTCCTTCCGTTCTACTTTAGACG
7822979 AGAATCGAAAGTG
1 AGAATCGAAAGTG
7822992 CGGCGCTTTC
Statistics
Matches: 118, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.02
42 109 0.92
43 7 0.06
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35
Consensus pattern (41 bp):
AGAATCGAAAGTGTGATATTCCTTCCGTTCTACTTTAGACG
Found at i:7822948 original size:84 final size:84
Alignment explanation
Indices: 7822810--7822991 Score: 231
Period size: 84 Copynumber: 2.2 Consensus size: 84
7822800 ATTCTACTTT
* ** * * **
7822810 AGAATCGAAAAGTGTGATGATTCCTTCCGTTCTACTTTAGATTATAATCGAAAGTGTGATATTTC
1 AGAATCG-AAAGTGTGATGATTCCTTCCGTTATACTTTAGACGATAACCAAAAGTGTGATACCTC
*
7822875 CTTCCGTTCTACTTTAGACG
65 ATTCCGTTCTACTTTAGACG
* * *
7822895 AGAATCGAAAGT-TCGATGCTTCCTTCCGTTATACTTTAGACGATAACCAAAAGTGTTATGCCTC
1 AGAATCGAAAGTGT-GATGATTCCTTCCGTTATACTTTAGACGATAACCAAAAGTGTGATACCTC
*
7822959 ATTTCGTTCTACTTTAGACG
65 ATTCCGTTCTACTTTAGACG
7822979 AGAATCGAAAGTG
1 AGAATCGAAAGTG
7822992 CGGCGCTTTC
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
83 1 0.01
84 75 0.90
85 7 0.08
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35
Consensus pattern (84 bp):
AGAATCGAAAGTGTGATGATTCCTTCCGTTATACTTTAGACGATAACCAAAAGTGTGATACCTCA
TTCCGTTCTACTTTAGACG
Found at i:7823185 original size:13 final size:13
Alignment explanation
Indices: 7823167--7823208 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
7823157 GTATATAGTA
7823167 TATTATATTATAT
1 TATTATATTATAT
*
7823180 TATTATATAATA-
1 TATTATATTATAT
*
7823192 TAGTATATTTATAT
1 TATTATA-TTATAT
7823206 TAT
1 TAT
7823209 ATAGTATAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 6 0.26
13 15 0.65
14 2 0.09
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (13 bp):
TATTATATTATAT
Found at i:7823203 original size:18 final size:16
Alignment explanation
Indices: 7823158--7823216 Score: 70
Period size: 18 Copynumber: 3.7 Consensus size: 16
7823148 TCATCTTGTG
7823158 TATATAGTATATTATA
1 TATATAGTATATTATA
7823174 T-TATA-T-TATTATA
1 TATATAGTATATTATA
7823187 TAATATAGTATATTTATA
1 T-ATATAGTATA-TTATA
7823205 TTATATAGTATA
1 -TATATAGTATA
7823217 AACATACTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
13 8 0.22
14 1 0.03
15 8 0.22
16 2 0.05
17 2 0.05
18 15 0.41
19 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (16 bp):
TATATAGTATATTATA
Found at i:7823216 original size:5 final size:5
Alignment explanation
Indices: 7823160--7823210 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
7823150 ATCTTGTGTA
* * *
7823160 TATAG TATAT TATAT TATAT TAT-T ATATAA TATAG TATATT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT -TATAT TATAT TATA-T TATAT TATAT
7823211 AGTATAAACA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
4 1 0.03
5 34 0.87
6 4 0.10
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (5 bp):
TATAT
Found at i:7823216 original size:23 final size:24
Alignment explanation
Indices: 7823158--7823216 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
7823148 TCATCTTGTG
7823158 TATATAGTATAT--TATATTATAT
1 TATATAGTATATAGTATATTATAT
7823180 TATTATA-TAATATAGTATATTTATAT
1 TA-TATAGT-ATATAGTATA-TTATAT
7823206 TATATAGTATA
1 TATATAGTATA
7823217 AACATACTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
22 3 0.10
23 8 0.26
25 11 0.35
26 9 0.29
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (24 bp):
TATATAGTATATAGTATATTATAT
Found at i:7836174 original size:18 final size:18
Alignment explanation
Indices: 7836153--7836187 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7836143 TATTATATTA
*
7836153 TTATATCCTATAGTATAT
1 TTATATCATATAGTATAT
*
7836171 TTATATTATATAGTATA
1 TTATATCATATAGTATA
7836188 AACATACTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.51
Consensus pattern (18 bp):
TTATATCATATAGTATAT
Found at i:7836279 original size:18 final size:18
Alignment explanation
Indices: 7836161--7836286 Score: 58
Period size: 18 Copynumber: 6.8 Consensus size: 18
7836151 TATTATATCC
* *
7836161 TATAGTATATTTATATTA
1 TATAGTATATATATACTA
* *
7836179 TATAGTATAAACATACTA
1 TATAGTATATATATACTA
* ** * *
7836197 TATGATTATGCATTTATTA
1 TAT-AGTATATATATACTA
* **
7836216 TATGGTATA-GCATACATA
1 TATAGTATATATATAC-TA
*
7836234 TATA-TATATATATAATA
1 TATAGTATATATATACTA
* *
7836251 CGTAGTGGTATATTTATACTA
1 --TA-TAGTATATATATACTA
7836272 TATAGTATATATATA
1 TATAGTATATATATA
7836287 TATTTACTAC
Statistics
Matches: 75, Mismatches: 26, Indels: 14
0.65 0.23 0.12
Matches are distributed among these distances:
17 8 0.11
18 39 0.52
19 16 0.21
20 1 0.01
21 11 0.15
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.44
Consensus pattern (18 bp):
TATAGTATATATATACTA
Found at i:7836347 original size:18 final size:17
Alignment explanation
Indices: 7836309--7836349 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
7836299 AATATATTTT
7836309 TTTTATTATATAGTACA
1 TTTTATTATATAGTACA
*
7836326 --TTATTATATATTACTA
1 TTTTATTATATAGTAC-A
7836342 TTTTATTA
1 TTTTATTA
7836350 AATCAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
15 13 0.65
16 1 0.05
18 6 0.30
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (17 bp):
TTTTATTATATAGTACA
Found at i:7837537 original size:13 final size:13
Alignment explanation
Indices: 7837519--7837548 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
7837509 TAGTAATCGA
7837519 TTTATTTTTATTT
1 TTTATTTTTATTT
7837532 TTTATTTTTATTT
1 TTTATTTTTATTT
7837545 TTTA
1 TTTA
7837549 ATTCTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTATTTTTATTT
Found at i:7846664 original size:20 final size:20
Alignment explanation
Indices: 7846618--7846664 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
7846608 GGGTGTTTAT
*
7846618 AATTGAAGATCTAGTGAGCC
1 AATTGAAGATATAGTGAGCC
7846638 -ATATGAAGATATA-TGAAGCC
1 AAT-TGAAGATATAGTG-AGCC
7846658 AATTGAA
1 AATTGAA
7846665 TTAAGGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 4 0.17
20 17 0.74
21 2 0.09
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.26
Consensus pattern (20 bp):
AATTGAAGATATAGTGAGCC
Found at i:7851749 original size:30 final size:29
Alignment explanation
Indices: 7851709--7851784 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 29
7851699 ATGAAAGCAT
*
7851709 GGTAATTTAGTAATTATCATGAAATTTAAG
1 GGTAAATTAGTAATTAT-ATGAAATTTAAG
* * *
7851739 GGTAAATTAGTAAATATATTTTAATTTTAAG
1 GGTAAATTAGT-AAT-TATATGAAATTTAAG
*
7851770 GGTAAATTGGTAATT
1 GGTAAATTAGTAATT
7851785 TTGCATTAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 1 0.03
30 13 0.33
31 22 0.56
32 3 0.08
ACGTcount: A:0.39, C:0.01, G:0.17, T:0.42
Consensus pattern (29 bp):
GGTAAATTAGTAATTATATGAAATTTAAG
Found at i:7851964 original size:20 final size:20
Alignment explanation
Indices: 7851939--7851989 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
7851929 TAATTTTTGG
7851939 ATTAAGCTATTAGATAGAGA
1 ATTAAGCTATTAGATAGAGA
7851959 ATTAAGCTATTAGATAGAGA
1 ATTAAGCTATTAGATAGAGA
7851979 ATTAAGCTATT
1 ATTAAGCTATT
7851990 TGAAATTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.43, C:0.06, G:0.18, T:0.33
Consensus pattern (20 bp):
ATTAAGCTATTAGATAGAGA
Found at i:7853989 original size:20 final size:20
Alignment explanation
Indices: 7853964--7854010 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
7853954 TATTATACTT
7853964 GATTTTGTTAATGTTAAAAA
1 GATTTTGTTAATGTTAAAAA
7853984 GATTTTGTTAATGTTAAAAA
1 GATTTTGTTAATGTTAAAAA
7854004 GATTTTG
1 GATTTTG
7854011 ATGAGTGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (20 bp):
GATTTTGTTAATGTTAAAAA
Found at i:7854214 original size:48 final size:48
Alignment explanation
Indices: 7854143--7854254 Score: 136
Period size: 48 Copynumber: 2.3 Consensus size: 48
7854133 GGTAGAGCAT
* * *
7854143 TTAGCACGTCTGGCGTCTTTGTGACGGTGGTGCTACTAAT-AATGATAA
1 TTAGCATGTCTGACGTCTGTGTGACGGTGGTGCTA-TAATCAATGATAA
* * * *
7854191 TTAGCATGTCTGACGTCTGTGTGATGGTGGTGCTATTATCAATGGTAC
1 TTAGCATGTCTGACGTCTGTGTGACGGTGGTGCTATAATCAATGATAA
*
7854239 CTAGCATGTCTGACGT
1 TTAGCATGTCTGACGT
7854255 TACTGACGTA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 3 0.05
48 52 0.95
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.35
Consensus pattern (48 bp):
TTAGCATGTCTGACGTCTGTGTGACGGTGGTGCTATAATCAATGATAA
Found at i:7854407 original size:30 final size:30
Alignment explanation
Indices: 7854372--7854469 Score: 133
Period size: 30 Copynumber: 3.3 Consensus size: 30
7854362 CTATGAGATA
*
7854372 AAAATGAATGATACATGCTACGAAATGAAT
1 AAAATGAATGATACATGCTATGAAATGAAT
* *
7854402 TAAATGAATGATACATGCTATGAAATAAAT
1 AAAATGAATGATACATGCTATGAAATGAAT
* * * *
7854432 GAAGTGAATGAAACATGGTATGAAATGAAT
1 AAAATGAATGATACATGCTATGAAATGAAT
7854462 AAAATGAA
1 AAAATGAA
7854470 AGGTAAAGGT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.51, C:0.06, G:0.18, T:0.24
Consensus pattern (30 bp):
AAAATGAATGATACATGCTATGAAATGAAT
Found at i:7855302 original size:20 final size:20
Alignment explanation
Indices: 7855265--7855303 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7855255 TTTACAGAGA
*
7855265 AAATATCCCCAAATGGCTAG
1 AAATATCCCCAAACGGCTAG
7855285 AAATCATCCCC-AACGGCTA
1 AAAT-ATCCCCAAACGGCTA
7855304 TAAACGGACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.38, C:0.31, G:0.13, T:0.18
Consensus pattern (20 bp):
AAATATCCCCAAACGGCTAG
Found at i:7856553 original size:15 final size:15
Alignment explanation
Indices: 7856528--7856565 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
7856518 ATGATAAAGA
7856528 AAAGAAGGACAAGAAG
1 AAAG-AGGACAAGAAG
*
7856544 AATGAGGACAAGAAG
1 AAAGAGGACAAGAAG
7856559 AAAGAGG
1 AAAGAGG
7856566 TAGACATTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 17 0.85
16 3 0.15
ACGTcount: A:0.58, C:0.05, G:0.34, T:0.03
Consensus pattern (15 bp):
AAAGAGGACAAGAAG
Found at i:7858521 original size:13 final size:13
Alignment explanation
Indices: 7858503--7858527 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7858493 AGAAAAGAGA
7858503 AGTATCGATACTT
1 AGTATCGATACTT
7858516 AGTATCGATACT
1 AGTATCGATACT
7858528 ATCAGCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
AGTATCGATACTT
Found at i:7860366 original size:20 final size:20
Alignment explanation
Indices: 7860341--7860388 Score: 80
Period size: 20 Copynumber: 2.4 Consensus size: 20
7860331 TAGTGTGTTT
7860341 CATATTTTAAA-AGCTTTAAA
1 CATATTTTAAACA-CTTTAAA
7860361 CATATTTTAAACACTTTAAA
1 CATATTTTAAACACTTTAAA
7860381 CATATTTT
1 CATATTTT
7860389 CGCTAATTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (20 bp):
CATATTTTAAACACTTTAAA
Found at i:7861436 original size:83 final size:83
Alignment explanation
Indices: 7861297--7861497 Score: 366
Period size: 83 Copynumber: 2.4 Consensus size: 83
7861287 CGAAGCTAAA
* *
7861297 AGAGTATTGCAATTGATTCACATGGATTTAATTGGTCCTATTAATGATGTTTTTTTAAATACATT
1 AGAGTATTGCAATTGATTCACATGGATTTAATTGGTCATATTAATGATGCTTTTTTAAATACATT
7861362 AATGATGTTTCCTCTAGT
66 AATGATGTTTCCTCTAGT
7861380 AGAGTATTGCAATTGATTCACATGGATTTAATTGGTCATATTAATGATGCTTTTTTAAATACATT
1 AGAGTATTGCAATTGATTCACATGGATTTAATTGGTCATATTAATGATGCTTTTTTAAATACATT
7861445 AATGATGTTTCCTCTAGT
66 AATGATGTTTCCTCTAGT
* *
7861463 AGACTATTGCAATTGATTCACATGGATTTATTTGG
1 AGAGTATTGCAATTGATTCACATGGATTTAATTGG
7861498 GCCTATTAGG
Statistics
Matches: 114, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 114 1.00
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.43
Consensus pattern (83 bp):
AGAGTATTGCAATTGATTCACATGGATTTAATTGGTCATATTAATGATGCTTTTTTAAATACATT
AATGATGTTTCCTCTAGT
Found at i:7863024 original size:2 final size:2
Alignment explanation
Indices: 7863017--7863062 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
7863007 TTCAAATTTA
7863017 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7863059 AT AT
1 AT AT
7863063 CCGAATTTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7871424 original size:12 final size:12
Alignment explanation
Indices: 7871409--7871450 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
7871399 CAAAAAAAAC
7871409 AAAAAAAAGGC-
1 AAAAAAAAGGCA
7871420 AAAAAAAAGGCA
1 AAAAAAAAGGCA
7871432 AAAAAAAAGGCA
1 AAAAAAAAGGCA
7871444 AAAAAAA
1 AAAAAAA
7871451 CAAAAAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 11 0.37
12 19 0.63
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGGCA
Found at i:7871435 original size:23 final size:21
Alignment explanation
Indices: 7871399--7871469 Score: 99
Period size: 23 Copynumber: 3.3 Consensus size: 21
7871389 ATTTTTTTTT
7871399 CAAAAAAAAC-AAAAAAAAGG
1 CAAAAAAAACAAAAAAAAAGG
7871419 CAAAAAAAAGGCAAAAAAAAAGG
1 CAAAAAAAA--CAAAAAAAAAGG
* *
7871442 CAAAAAAAACAAAAAAAGAGC
1 CAAAAAAAACAAAAAAAAAGG
7871463 CAAAAAA
1 CAAAAAA
7871470 GCCAAAATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.20
21 17 0.37
22 1 0.02
23 19 0.41
ACGTcount: A:0.77, C:0.11, G:0.11, T:0.00
Consensus pattern (21 bp):
CAAAAAAAACAAAAAAAAAGG
Found at i:7871466 original size:12 final size:11
Alignment explanation
Indices: 7871399--7871469 Score: 87
Period size: 11 Copynumber: 6.6 Consensus size: 11
7871389 ATTTTTTTTT
7871399 CAAAAAAAA--
1 CAAAAAAAAGG
7871408 CAAAAAAAAGG
1 CAAAAAAAAGG
7871419 CAAAAAAAAGG
1 CAAAAAAAAGG
7871430 CAAAAAAAAAGG
1 C-AAAAAAAAGG
7871442 CAAAAAAAA--
1 CAAAAAAAAGG
*
7871451 CAAAAAAAGAGC
1 CAAAAAAA-AGG
7871463 CAAAAAA
1 CAAAAAA
7871470 GCCAAAATTT
Statistics
Matches: 56, Mismatches: 0, Indels: 9
0.86 0.00 0.14
Matches are distributed among these distances:
9 17 0.30
10 1 0.02
11 20 0.36
12 18 0.32
ACGTcount: A:0.77, C:0.11, G:0.11, T:0.00
Consensus pattern (11 bp):
CAAAAAAAAGG
Found at i:7871475 original size:21 final size:21
Alignment explanation
Indices: 7871399--7871476 Score: 75
Period size: 21 Copynumber: 3.7 Consensus size: 21
7871389 ATTTTTTTTT
* *
7871399 CAAAAAAAACAAAAAAAAGGC
1 CAAAAAAGACAAAAAAAAAGC
* * *
7871420 AAAAAAAAGGCAAAAAAAAAGG
1 -CAAAAAAGACAAAAAAAAAGC
* *
7871442 CAAAAAAAACAAAAAAAGAGC
1 CAAAAAAGACAAAAAAAAAGC
*
7871463 CAAAAAAGCCAAAA
1 CAAAAAAGACAAAA
7871477 TTTCAAAAAA
Statistics
Matches: 44, Mismatches: 12, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
21 28 0.64
22 16 0.36
ACGTcount: A:0.76, C:0.13, G:0.12, T:0.00
Consensus pattern (21 bp):
CAAAAAAGACAAAAAAAAAGC
Found at i:7884052 original size:29 final size:30
Alignment explanation
Indices: 7883974--7884057 Score: 98
Period size: 29 Copynumber: 2.8 Consensus size: 30
7883964 AAGTTGAAAA
*
7883974 AAAACTGTTCACTGTTTCGAACAACAACAAC
1 AAAA-TGTTCACTGTTTCGAACAGCAACAAC
** * *
7884005 AACAAAATTCAATGTTTCGAACAGC-ATAAC
1 AA-AATGTTCACTGTTTCGAACAGCAACAAC
7884035 AAAATGTTCACTGTTTCGAACAG
1 AAAATGTTCACTGTTTCGAACAG
7884058 AGAAAGAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
29 18 0.41
30 6 0.14
31 18 0.41
32 2 0.05
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.25
Consensus pattern (30 bp):
AAAATGTTCACTGTTTCGAACAGCAACAAC
Found at i:7885936 original size:22 final size:22
Alignment explanation
Indices: 7885910--7885954 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7885900 AACTCTCCCT
7885910 TTTTATCT-TTTAATTATATTTA
1 TTTTAT-TATTTAATTATATTTA
* *
7885932 TTTTATTATTTTATTATTTTTA
1 TTTTATTATTTAATTATATTTA
7885954 T
1 T
7885955 CTTTTCATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTATTATTTAATTATATTTA
Found at i:7889155 original size:19 final size:20
Alignment explanation
Indices: 7889110--7889160 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
7889100 AACGTCAAGG
*
7889110 AAAGTTTTGAAACTTTTCTA
1 AAAGTTTTGAAACTCTTCTA
*
7889130 AAAGTTTTGAAACTCTTGT-
1 AAAGTTTTGAAACTCTTCTA
*
7889149 GAAGTTTTGAAA
1 AAAGTTTTGAAA
7889161 TCCTAAATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 11 0.39
20 17 0.61
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (20 bp):
AAAGTTTTGAAACTCTTCTA
Found at i:7892199 original size:20 final size:21
Alignment explanation
Indices: 7892165--7892205 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
7892155 CACACTGTTT
**
7892165 TGAAAGTTTTGAAACT-TTAA
1 TGAAAGTTTCAAAACTCTTAA
7892185 TGAAAGTTTCAAAACTCTTAA
1 TGAAAGTTTCAAAACTCTTAA
7892206 AAATATGACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (21 bp):
TGAAAGTTTCAAAACTCTTAA
Found at i:7892389 original size:20 final size:20
Alignment explanation
Indices: 7892341--7892390 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
7892331 TAGTGTTTTT
7892341 CATATTTTAAAAGCTTTAAA
1 CATATTTTAAAAGCTTTAAA
* *
7892361 CACAATTTAAACA-CTTTAAA
1 CATATTTTAAA-AGCTTTAAA
7892381 CATATTTTAA
1 CATATTTTAA
7892391 TTAACTCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.38
Consensus pattern (20 bp):
CATATTTTAAAAGCTTTAAA
Found at i:7894225 original size:20 final size:19
Alignment explanation
Indices: 7894202--7894248 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
7894192 GGAATTTTTT
*
7894202 GAAACTTTGATGAAAGTTTC
1 GAAACTTTG-TGAAAGTATC
7894222 GAAACTATTGTGAAAGTATC
1 GAAACT-TTGTGAAAGTATC
*
7894242 AAAACTT
1 GAAACTT
7894249 CTAAACACAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 1 0.04
20 20 0.83
21 3 0.12
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (19 bp):
GAAACTTTGTGAAAGTATC
Found at i:7894630 original size:159 final size:165
Alignment explanation
Indices: 7894371--7894698 Score: 488
Period size: 170 Copynumber: 2.0 Consensus size: 165
7894361 GAAGTTTTGA
*
7894371 AACTGTGAACAATACACGTGTATGAACAGTGTCATGAACTACGCCAAATAGTAACTAAATAGTAT
1 AACTGTGAACAATACACGTGTATGAACAGTATCATGAACTACGCCAAATAGTAACTAAATAGTAT
7894436 TTTTAATATTTTTAAAAGATTTAAACACGTTTTAAACACTTTAAACATATTTTAATTAACTC-AA
66 TTTTAATATTTTTAAAAG------A-AC--TTTAAACACTTTAAACATATTTTAATTAACTCAAA
7894500 AATATTTC-ATATATATAT-T-TATATAACAATTTAAATAGTAT
122 AATATTTCAATATATATATATATATATAACAATTTAAATAGTAT
* * *
7894541 AACTGTGAACAATACACGTGTATGAACAGTATCATGAACTATGTCAAATAGTGACTAAATAGTAT
1 AACTGTGAACAATACACGTGTATGAACAGTATCATGAACTACGCCAAATAGTAACTAAATAGTAT
7894606 TTTTAATATTTTTAAAAG-A-TTTAAACACTTTAAACATATTTTAATTAACTCAAAAATATTTCA
66 TTTTAATATTTTTAAAAGAACTTTAAACACTTTAAACATATTTTAATTAACTCAAAAATATTTCA
7894669 TATATATATATATATATATAACAATTTAAA
131 -ATATATATATATATATATAACAATTTAAA
7894699 ACACATATTT
Statistics
Matches: 149, Mismatches: 4, Indels: 16
0.88 0.02 0.09
Matches are distributed among these distances:
159 32 0.21
160 10 0.07
162 11 0.07
163 1 0.01
164 16 0.11
170 79 0.53
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.37
Consensus pattern (165 bp):
AACTGTGAACAATACACGTGTATGAACAGTATCATGAACTACGCCAAATAGTAACTAAATAGTAT
TTTTAATATTTTTAAAAGAACTTTAAACACTTTAAACATATTTTAATTAACTCAAAAATATTTCA
ATATATATATATATATATAACAATTTAAATAGTAT
Found at i:7901721 original size:120 final size:119
Alignment explanation
Indices: 7901560--7901799 Score: 453
Period size: 120 Copynumber: 2.0 Consensus size: 119
7901550 GTCAGCAAAG
7901560 AAAAATTAGGACTGCTTCCTTAGGCGTTGCAAACCTAGTTAATGAATTAAAGCTGAAAAAGAAAG
1 AAAAATTAGGACTGCTTCCTTAGGCGTTGCAAACCTAGTTAATGAATTAAAGCTGAAAAAGAAAG
7901625 ACAAGTTAATCAAAGCTAAAAAAGTTGAGATAGAAGGTAGTGGAGCTACCCTTA
66 ACAAGTTAATCAAAGCTAAAAAAGTTGAGATAGAAGGTAGTGGAGCTACCCTTA
* *
7901679 AAAATATTAGGACTGTTTCTTTAGGCGTTGCAAACCTAGTTAATGAATTAAAGCTGAAAAAGAAA
1 AAAA-ATTAGGACTGCTTCCTTAGGCGTTGCAAACCTAGTTAATGAATTAAAGCTGAAAAAGAAA
7901744 GACAAGTTAATCAAAGCTAAAAAAGTTGAGATAGAAGGTAGTGGAGCTACCCTTA
65 GACAAGTTAATCAAAGCTAAAAAAGTTGAGATAGAAGGTAGTGGAGCTACCCTTA
7901799 A
1 A
7901800 TTCTTCTTCT
Statistics
Matches: 118, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
119 4 0.03
120 114 0.97
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.25
Consensus pattern (119 bp):
AAAAATTAGGACTGCTTCCTTAGGCGTTGCAAACCTAGTTAATGAATTAAAGCTGAAAAAGAAAG
ACAAGTTAATCAAAGCTAAAAAAGTTGAGATAGAAGGTAGTGGAGCTACCCTTA
Found at i:7905531 original size:16 final size:16
Alignment explanation
Indices: 7905478--7905532 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
7905468 AGGTTTGAAG
7905478 AACT-GTAGATCCAAAA
1 AACTCGTAGAT-CAAAA
*
7905494 AACTCGTAAATC---A
1 AACTCGTAGATCAAAA
*
7905507 AACTTGTAGATCAAAA
1 AACTCGTAGATCAAAA
7905523 AACTCGTAGA
1 AACTCGTAGA
7905533 ATGTAGCCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
13 11 0.35
16 15 0.48
17 5 0.16
ACGTcount: A:0.47, C:0.18, G:0.13, T:0.22
Consensus pattern (16 bp):
AACTCGTAGATCAAAA
Found at i:7908702 original size:2 final size:2
Alignment explanation
Indices: 7908695--7908806 Score: 167
Period size: 2 Copynumber: 57.0 Consensus size: 2
7908685 AATAATTAGG
** *
7908695 TA TA TA TA TA TA TCA -A TA -A TA GG TA TA TA -A TA AA TA TA TA
1 TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7908735 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7908777 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7908807 CATACAATAA
Statistics
Matches: 100, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
1 3 0.03
2 96 0.96
3 1 0.01
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (2 bp):
TA
Found at i:7908731 original size:24 final size:24
Alignment explanation
Indices: 7908685--7908731 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7908675 ACCGAACAAA
*
7908685 AATAATTAGGTATATATATATATC
1 AATAATTAGGTATATATAAATATC
7908709 AATAA-TAGGTATATAATAAATAT
1 AATAATTAGGTATAT-ATAAATAT
7908732 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.51, C:0.02, G:0.09, T:0.38
Consensus pattern (24 bp):
AATAATTAGGTATATATAAATATC
Found at i:7909871 original size:2 final size:2
Alignment explanation
Indices: 7909855--7909942 Score: 103
Period size: 2 Copynumber: 45.0 Consensus size: 2
7909845 TAATAAAATA
*
7909855 AT AT TT AT AT A- AT AT AT AT GAT AT AT GAT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT -AT AT AT -AT AT AT AT AT AT AT AT
* *
7909897 AT A- AT AT AT A- AT AT AT AA AT AT AT AA AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7909937 AT AT AT
1 AT AT AT
7909943 TTATTTCGGT
Statistics
Matches: 74, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
1 4 0.05
2 66 0.89
3 4 0.05
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7912089 original size:8 final size:7
Alignment explanation
Indices: 7912061--7912114 Score: 58
Period size: 7 Copynumber: 7.7 Consensus size: 7
7912051 ACCCACCTTA
7912061 TTTTTCT
1 TTTTTCT
*
7912068 TTTCTCT
1 TTTTTCT
7912075 TTTTTCT
1 TTTTTCT
7912082 TTTGTTCT
1 TTT-TTCT
*
7912090 TTGTT-T
1 TTTTTCT
7912096 TTTTTCT
1 TTTTTCT
7912103 TTTCTT-T
1 TTT-TTCT
7912110 TTTTT
1 TTTTT
7912115 TTAATTTAGG
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
6 7 0.17
7 25 0.62
8 8 0.20
ACGTcount: A:0.00, C:0.13, G:0.04, T:0.83
Consensus pattern (7 bp):
TTTTTCT
Found at i:7912175 original size:15 final size:15
Alignment explanation
Indices: 7912153--7912192 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
7912143 ACCCTAAACA
7912153 TTTTTTCTTTTT-TT
1 TTTTTTCTTTTTCTT
7912167 TTTTGTTCTTTTTCTT
1 TTTT-TTCTTTTTCTT
7912183 TTTCTTTCTT
1 TTT-TTTCTT
7912193 CGACTTAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.17
15 8 0.35
16 10 0.43
17 1 0.04
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.85
Consensus pattern (15 bp):
TTTTTTCTTTTTCTT
Found at i:7922680 original size:33 final size:32
Alignment explanation
Indices: 7922638--7922715 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 32
7922628 GTAAAGAAAC
7922638 ATAAATAAAATAGAAAAAGAACAAAAAAAT-AA
1 ATAAATAAAATA-AAAAAGAACAAAAAAATGAA
* * *
7922670 ATAAAATAAAAATAAATAGGGACAAAAAAATGAA
1 AT-AAAT-AAAATAAAAAAGAACAAAAAAATGAA
*
7922704 ATAAGTAAAATA
1 ATAAATAAAATA
7922716 TGGGCAAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
32 8 0.21
33 21 0.54
34 10 0.26
ACGTcount: A:0.73, C:0.03, G:0.09, T:0.15
Consensus pattern (32 bp):
ATAAATAAAATAAAAAAGAACAAAAAAATGAA
Found at i:7922859 original size:25 final size:25
Alignment explanation
Indices: 7922831--7922902 Score: 62
Period size: 25 Copynumber: 2.9 Consensus size: 25
7922821 AAACTATAAA
*
7922831 ATAAAATTAATATGATATAATAAT-G
1 ATAAAATTAATA-GATATAATAATAC
* *
7922856 ATAAAA-AAATAGAAAT-ATATATAC
1 ATAAAATTAATAGATATAATA-ATAC
7922880 ATAAAATT-ATAAGATATAATAAT
1 ATAAAATTAAT-AGATATAATAAT
7922903 TAAATAAAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 10
0.71 0.10 0.19
Matches are distributed among these distances:
22 3 0.08
23 6 0.16
24 12 0.32
25 13 0.35
26 3 0.08
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (25 bp):
ATAAAATTAATAGATATAATAATAC
Found at i:7928429 original size:15 final size:15
Alignment explanation
Indices: 7928390--7928429 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
7928380 GTTCCCCTTG
*
7928390 CTAGGGTTTTTCTCA
1 CTAGGGTTTTCCTCA
* *
7928405 CTAAGATTTTCCTCA
1 CTAGGGTTTTCCTCA
7928420 CTAGGGTTTT
1 CTAGGGTTTT
7928430 TCATTTGTCA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.45
Consensus pattern (15 bp):
CTAGGGTTTTCCTCA
Found at i:7929928 original size:30 final size:30
Alignment explanation
Indices: 7929800--7929930 Score: 174
Period size: 30 Copynumber: 4.4 Consensus size: 30
7929790 TTATTCTGCT
7929800 TGGGA-TTTCGTTCCCCATCCTGATTCTACA
1 TGGGACTTT-GTTCCCCATCCTGATTCTACA
* * * *
7929830 TGAGACTTCGTTCCCCATCCTGATTTTGCA
1 TGGGACTTTGTTCCCCATCCTGATTCTACA
* *
7929860 TGGGACTTTGTTCCCCATCCTAATTCTGCA
1 TGGGACTTTGTTCCCCATCCTGATTCTACA
* *
7929890 TGGGACTTTGTTCCCCGTCCTGATTCTATA
1 TGGGACTTTGTTCCCCATCCTGATTCTACA
7929920 TGGGACTTTGT
1 TGGGACTTTGT
7929931 CCCATGTCAT
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
30 86 0.98
31 2 0.02
ACGTcount: A:0.15, C:0.27, G:0.19, T:0.38
Consensus pattern (30 bp):
TGGGACTTTGTTCCCCATCCTGATTCTACA
Found at i:7936603 original size:30 final size:30
Alignment explanation
Indices: 7936567--7936728 Score: 155
Period size: 30 Copynumber: 5.4 Consensus size: 30
7936557 TTCTATATGA
* * *
7936567 GACTTCGTTCCCTATCTTAATTTTACATGG
1 GACTTCGTTCCCTGTCTTAATTCTGCATGG
* * *
7936597 GACTTCGTTCCCCGTCCTAATTATGCATGG
1 GACTTCGTTCCCTGTCTTAATTCTGCATGG
** *
7936627 GACTTCGTTCTTTGTCTTGATTCTGCATGG
1 GACTTCGTTCCCTGTCTTAATTCTGCATGG
* * *
7936657 GACTTCATTCACTGTCTTGATTCTGCATGG
1 GACTTCGTTCCCTGTCTTAATTCTGCATGG
* * * * *
7936687 AACTTCGTT-CCTCGTCCTGATTCTGTATGA
1 GACTTCGTTCCCT-GTCTTAATTCTGCATGG
7936717 GACTTCGTTCCC
1 GACTTCGTTCCC
7936729 CGTCCTATTT
Statistics
Matches: 109, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
29 2 0.02
30 105 0.96
31 2 0.02
ACGTcount: A:0.15, C:0.26, G:0.19, T:0.40
Consensus pattern (30 bp):
GACTTCGTTCCCTGTCTTAATTCTGCATGG
Found at i:7936660 original size:60 final size:60
Alignment explanation
Indices: 7936592--7936741 Score: 183
Period size: 60 Copynumber: 2.5 Consensus size: 60
7936582 CTTAATTTTA
* * * *
7936592 CATGGGACTTCGTTCCCCGTCCTAATTATGCATGGGACTTCGTTCTTTGTCTTGATTCTG
1 CATGGGACTTCGTTCCCCGTCCTAATTATGCATGGAACTTCGTTCCTCGTCCTGATTCTG
* * * * * *
7936652 CATGGGACTTCATTCACTGTCTTGATTCTGCATGGAACTTCGTTCCTCGTCCTGATTCTG
1 CATGGGACTTCGTTCCCCGTCCTAATTATGCATGGAACTTCGTTCCTCGTCCTGATTCTG
* * *
7936712 TATGAGACTTCGTTCCCCGTCCTATTTATG
1 CATGGGACTTCGTTCCCCGTCCTAATTATG
7936742 TTTGGGATTC
Statistics
Matches: 71, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
60 71 1.00
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.39
Consensus pattern (60 bp):
CATGGGACTTCGTTCCCCGTCCTAATTATGCATGGAACTTCGTTCCTCGTCCTGATTCTG
Found at i:7936733 original size:30 final size:30
Alignment explanation
Indices: 7936592--7936734 Score: 160
Period size: 30 Copynumber: 4.8 Consensus size: 30
7936582 CTTAATTTTA
* *
7936592 CATGGGACTTCGTTCCCCGTCCTAATTATG
1 CATGGGACTTCGTTCCCCGTCCTGATTCTG
*** *
7936622 CATGGGACTTCGTTCTTTGTCTTGATTCTG
1 CATGGGACTTCGTTCCCCGTCCTGATTCTG
* * * *
7936652 CATGGGACTTCATTCACTGTCTTGATTCTG
1 CATGGGACTTCGTTCCCCGTCCTGATTCTG
* *
7936682 CATGGAACTTCGTTCCTCGTCCTGATTCTG
1 CATGGGACTTCGTTCCCCGTCCTGATTCTG
* *
7936712 TATGAGACTTCGTTCCCCGTCCT
1 CATGGGACTTCGTTCCCCGTCCT
7936735 ATTTATGTTT
Statistics
Matches: 94, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 94 1.00
ACGTcount: A:0.14, C:0.27, G:0.20, T:0.38
Consensus pattern (30 bp):
CATGGGACTTCGTTCCCCGTCCTGATTCTG
Found at i:7936741 original size:26 final size:30
Alignment explanation
Indices: 7936554--7936734 Score: 121
Period size: 30 Copynumber: 6.0 Consensus size: 30
7936544 TAATGCATTA
* ** *
7936554 TGATTCTATATGAGACTTCGTTCCCTATCT
1 TGATTCTGTATGAGACTTCGTTCCCCGTCC
* * ** *
7936584 TAATTTTACATGGGACTTCGTTCCCCGTCC
1 TGATTCTGTATGAGACTTCGTTCCCCGTCC
* * * * *** *
7936614 TAATTATGCATGGGACTTCGTTCTTTGTCT
1 TGATTCTGTATGAGACTTCGTTCCCCGTCC
* * * * * *
7936644 TGATTCTGCATGGGACTTCATTCACTGTCT
1 TGATTCTGTATGAGACTTCGTTCCCCGTCC
* *
7936674 TGATTCTGCATG-GAACTTCGTTCCTCGTCC
1 TGATTCTGTATGAG-ACTTCGTTCCCCGTCC
7936704 TGATTCTGTATGAGACTTCGTTCCCCGTCC
1 TGATTCTGTATGAGACTTCGTTCCCCGTCC
7936734 T
1 T
7936735 ATTTATGTTT
Statistics
Matches: 124, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
29 1 0.01
30 122 0.98
31 1 0.01
ACGTcount: A:0.16, C:0.25, G:0.18, T:0.40
Consensus pattern (30 bp):
TGATTCTGTATGAGACTTCGTTCCCCGTCC
Found at i:7937982 original size:2 final size:2
Alignment explanation
Indices: 7937971--7938018 Score: 66
Period size: 2 Copynumber: 25.0 Consensus size: 2
7937961 CCGCTCAAAT
7937971 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TCA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA
7938012 T- TA TA TA
1 TA TA TA TA
7938019 ATAAAATTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
1 3 0.07
2 37 0.88
3 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7939259 original size:13 final size:13
Alignment explanation
Indices: 7939241--7939265 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7939231 TATTGCTTAT
7939241 TTTATTTTATTTA
1 TTTATTTTATTTA
7939254 TTTATTTTATTT
1 TTTATTTTATTT
7939266 CTCATTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:7939299 original size:10 final size:10
Alignment explanation
Indices: 7939284--7939310 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
7939274 TTCTTTTCCT
7939284 TCTTTTAACG
1 TCTTTTAACG
7939294 TCTTTTAACG
1 TCTTTTAACG
7939304 TCTTTTA
1 TCTTTTA
7939311 TTTTTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.19, G:0.07, T:0.56
Consensus pattern (10 bp):
TCTTTTAACG
Found at i:7944541 original size:288 final size:286
Alignment explanation
Indices: 7943769--7944566 Score: 1057
Period size: 288 Copynumber: 2.8 Consensus size: 286
7943759 GTAATTGTAT
* * * * *
7943769 AGGGTTTGAAGTAAATTACAAAAATAGAAATAATTATGGGTTAATTTAAGATAAAATATACTTTT
1 AGGGTTTGGAGTAAATTAAAAAAATAGAAATAATTATGGGTCAATTTAGGATAAAATAAACTTTT
* * ** *
7943834 AAGAACTAAGTTGAACAAACATGAAATTACAAACTAAAAATTAAATAAATTTTACAACACAGAAG
66 AAGAACTAAATTGAACAAACATGAAATTACAAACTAAAATTTAAATAAATTAAACAACACACAAG
* *
7943899 GATCAAATTGAAACAATTATAAAATATAAAGTTGAAATTAATAT-AAAATGGACTAAATTGAATT
131 GATCAAATTGAAATAATTGTAAAATATAAAGTTGAAATTAATATCAAAATGGACTAAATTGAATT
* * * * *
7943963 CATTTTAAAAGTTGGTGAACAAAAGTTTATATGGTTTAGAGATTATGATATAATTTATAGGGTTT
196 CATTTTAAAAGTTAGTGAACAAAAGTTTATAAGATTTAGAGATTATAATATAATTTATAGGGCTT
* * *
7944028 GAAATGAAGTTTATGATGTGATTTAT
261 GAAATGAAATTTATGATATGATTTAC
*
7944054 ATGGTTTGGAGTAAATT-AAAAAATAGAAATAATTATGGG-CTAATTTAGGATAAAAATTAAACT
1 AGGGTTTGGAGTAAATTAAAAAAATAGAAATAATTATGGGTC-AATTTAGGAT-AAAA-TAAACT
* * * *
7944117 TTTAAGGACTAAATTGAACAAACATGAAATTAGAAACTAAAATTCAAATAAATTAAACATCACAC
63 TTTAAGAACTAAATTGAACAAACATGAAATTACAAACTAAAATTTAAATAAATTAAACAACACAC
* * * * *
7944182 AAGGGTCATATTGAAATAATTGTAAAATGTAAAGTTGAAATTAATATCAAACTGGACTAAATTGC
128 AAGGATCAAATTGAAATAATTGTAAAATATAAAGTTGAAATTAATATCAAAATGGACTAAATTGA
*
7944247 ATTCATTTTAAAAGTTAGTGAACAAAAGTTTATAAGATTTGGAGATTATAATATAATTTATAGGG
193 ATTCATTTTAAAAGTTAGTGAACAAAAGTTTATAAGATTTAGAGATTATAATATAATTTATAGGG
*
7944312 CTTGAAATGAAATTTATGATATGGTTTAC
258 CTTGAAATGAAATTTATGATATGATTTAC
* * *
7944341 AGGGTTTGGAGTAAATTATAAAAAAATAAAAATAATTATGGGTCAATTTTGGATCAAAACAAAC-
1 AGGGTTTGGAGTAAA-T-TAAAAAAATAGAAATAATTATGGGTCAATTTAGGAT-AAAATAAACT
* * * * * *
7944405 TTTAAGTACTAAATTGAACAAACATGAAATTACAATCTAAATTTTGAATAAATTAAATAGCACAC
63 TTTAAGAACTAAATTGAACAAACATGAAATTACAAACTAAAATTTAAATAAATTAAACAACACAC
* * * *
7944470 ATGGATCAAATTGAAATAATTGTAAAATATAAAGTTGAAATTAATATCAAATTGGACT-AAGTAA
128 AAGGATCAAATTGAAATAATTGTAAAATATAAAGTTGAAATTAATATCAAAATGGACTAAATTGA
* * * *
7944534 GATTCATTTTAAATGTCAGTAAACGAAAGTTTA
193 -ATTCATTTTAAAAGTTAGTGAACAAAAGTTTA
7944567 ACATCTTAAT
Statistics
Matches: 447, Mismatches: 57, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
284 30 0.07
285 19 0.04
286 103 0.23
287 116 0.26
288 139 0.31
289 5 0.01
290 34 0.08
291 1 0.00
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.32
Consensus pattern (286 bp):
AGGGTTTGGAGTAAATTAAAAAAATAGAAATAATTATGGGTCAATTTAGGATAAAATAAACTTTT
AAGAACTAAATTGAACAAACATGAAATTACAAACTAAAATTTAAATAAATTAAACAACACACAAG
GATCAAATTGAAATAATTGTAAAATATAAAGTTGAAATTAATATCAAAATGGACTAAATTGAATT
CATTTTAAAAGTTAGTGAACAAAAGTTTATAAGATTTAGAGATTATAATATAATTTATAGGGCTT
GAAATGAAATTTATGATATGATTTAC
Found at i:7945091 original size:44 final size:43
Alignment explanation
Indices: 7945038--7945122 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 43
7945028 AAATATTAAT
**
7945038 TTAGTATTTAGT-AT-TTTATATTATTTATTAGAAAATTAATAGA
1 TTAGTATTTA-TCATATTTATATTAGATATTA-AAAATTAATAGA
*
7945081 TTAGTTATTTATCATATTTTTATTAGATATTAAAAATTAATA
1 TTAG-TATTTATCATATTTATATTAGATATTAAAAATTAATA
7945123 ATTTTTTTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
43 5 0.14
44 18 0.50
45 13 0.36
ACGTcount: A:0.40, C:0.01, G:0.07, T:0.52
Consensus pattern (43 bp):
TTAGTATTTATCATATTTATATTAGATATTAAAAATTAATAGA
Found at i:7949475 original size:28 final size:27
Alignment explanation
Indices: 7949442--7949494 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
7949432 TTGGTCAAAA
*
7949442 TAAGCCCCTAAACTATACCTTTTTGTTT
1 TAAGCCCCTAAAATAT-CCTTTTTGTTT
*
7949470 TAAGCCCCTAAAATATCTTTTTTGT
1 TAAGCCCCTAAAATATCCTTTTTGT
7949495 CAAAACAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.26, C:0.23, G:0.08, T:0.43
Consensus pattern (27 bp):
TAAGCCCCTAAAATATCCTTTTTGTTT
Found at i:7950457 original size:19 final size:19
Alignment explanation
Indices: 7950433--7950469 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7950423 TATTACTATT
*
7950433 ATTCAAAGGATAAAAAAAA
1 ATTCAAAGGACAAAAAAAA
*
7950452 ATTCAAAGTACAAAAAAA
1 ATTCAAAGGACAAAAAAA
7950470 TATTAACTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (19 bp):
ATTCAAAGGACAAAAAAAA
Found at i:7952929 original size:169 final size:169
Alignment explanation
Indices: 7952644--7952953 Score: 431
Period size: 169 Copynumber: 1.8 Consensus size: 169
7952634 ATTGCAATAC
* * * * * *
7952644 TTAGATCCGACTCAGACGTTATAATTGAACCTTGAAAATAATATTAGTCACCGAAACGACTCGAA
1 TTAGATCCGACTAAGACGTTATAACTGAACCTCGAAAATAATATTAATCACCGAAACAACTCAAA
* * * * * *
7952709 AGTCAATTTAAAAATTTTAACCGATATGTAATGAAAATTTTAGATAATTTATTGAATTATTATTC
66 AGTCAATTCAAAAATTTTAACCAATACGTAATCAAAATTTTAGACAATTTATTGAATGATTATTC
7952774 CCTTATCAAAATTGATACAGTAGACAATAATTATAATCT
131 CCTTATCAAAATTGATACAGTAGACAATAATTATAATCT
* * * * *
7952813 TTAGATCCGACTAAGATGTTATAACTGAATCTCGAAGATAATATTAATTACTGAAACAACTCAAA
1 TTAGATCCGACTAAGACGTTATAACTGAACCTCGAAAATAATATTAATCACCGAAACAACTCAAA
* * * *
7952878 AGTCAGTTCAAAAATTTTAATCAATACGTAATCAAAATTTTGGGCAATTTATTGAATGATTATTC
66 AGTCAATTCAAAAATTTTAACCAATACGTAATCAAAATTTTAGACAATTTATTGAATGATTATTC
7952943 CCTTATCAAAA
131 CCTTATCAAAA
7952954 AATAATCTAA
Statistics
Matches: 120, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
169 120 1.00
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (169 bp):
TTAGATCCGACTAAGACGTTATAACTGAACCTCGAAAATAATATTAATCACCGAAACAACTCAAA
AGTCAATTCAAAAATTTTAACCAATACGTAATCAAAATTTTAGACAATTTATTGAATGATTATTC
CCTTATCAAAATTGATACAGTAGACAATAATTATAATCT
Found at i:7956588 original size:17 final size:17
Alignment explanation
Indices: 7956568--7956606 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
7956558 GAAAGTCAAC
7956568 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
7956585 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
7956602 GGTCA
1 GGTCA
7956607 TACCGGTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:7956620 original size:9 final size:9
Alignment explanation
Indices: 7956602--7956677 Score: 62
Period size: 10 Copynumber: 8.0 Consensus size: 9
7956592 GGTCGGGTCG
*
7956602 GGTCATACC
1 GGTCAAACC
7956611 GGTCAAACC
1 GGTCAAACC
* *
7956620 GGTTCAGACT
1 GG-TCAAACC
7956630 GGTCAAACC
1 GGTCAAACC
* *
7956639 GGTTCGAACT
1 GG-TCAAACC
*
7956649 GGTCGGAACC
1 GGTC-AAACC
7956659 GGTCAAAACC
1 GGTC-AAACC
7956669 GGTCAAACC
1 GGTCAAACC
7956678 AGTTTTCCAG
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
9 24 0.44
10 30 0.56
ACGTcount: A:0.28, C:0.29, G:0.26, T:0.17
Consensus pattern (9 bp):
GGTCAAACC
Found at i:7956633 original size:19 final size:19
Alignment explanation
Indices: 7956611--7956652 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
7956601 GGGTCATACC
7956611 GGTCAAACCGGTTC-AGACT
1 GGTCAAACCGGTTCGA-ACT
7956630 GGTCAAACCGGTTCGAACT
1 GGTCAAACCGGTTCGAACT
7956649 GGTC
1 GGTC
7956653 GGAACCGGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 21 0.95
20 1 0.05
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (19 bp):
GGTCAAACCGGTTCGAACT
Found at i:7967047 original size:16 final size:18
Alignment explanation
Indices: 7967026--7967071 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 18
7967016 AAGCCTGAAA
7967026 AAATAATAT-TAA-TAAT
1 AAATAATATATAATTAAT
7967042 AAATAAT-TATAATTAAT
1 AAATAATATATAATTAAT
7967059 -AATAATAATATAA
1 AAATAAT-ATATAA
7967072 AAATGTTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 1 0.04
16 16 0.62
17 4 0.15
18 5 0.19
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AAATAATATATAATTAAT
Found at i:7967053 original size:13 final size:13
Alignment explanation
Indices: 7967030--7967068 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
7967020 CTGAAAAAAT
*
7967030 AATATTAATAATA
1 AATAATAATAATA
* *
7967043 AATAATTATAATT
1 AATAATAATAATA
7967056 AATAATAATAATA
1 AATAATAATAATA
7967069 TAAAAATGTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AATAATAATAATA
Found at i:7967729 original size:265 final size:268
Alignment explanation
Indices: 7967240--7968345 Score: 1247
Period size: 265 Copynumber: 4.2 Consensus size: 268
7967230 ATCAGATCGA
* * * * * * * *
7967240 GAAACGATT-ATTCATTCCACTTTTCTTTAGAGAATATTGAATCAAT-GTAGACCTATTGCACTG
1 GAAAC-ATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATC-GTGGTAGACTTGTTCCACTG
* * * * * * *
7967303 TTACTCA-GGAAGATCAAATATT-AATAGAGAAGGATTTGTTCTGCTT-TT-TTTAGGGAAAATA
64 TTACTCAGGGAAGATCAAATCTTGAA-AGAGATGGATCTGTTCCGCTTCTTCTTGAGAGAAAATC
* * * *
7967364 AGATATGGAAATGTTGATTCGTTCCACTATTCTTCAGGGAAGATTGAATCTAGGCACACTTGTTC
128 AGATATGGAAACGTTGATTCATTCCACTATTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTC
* * * *
7967429 CACTGTTACTCAGGGAAGATCAAATCTTAAAAGAGAAGGATATGTTTTGCTTATTCTTGAGAGAA
193 CACTGTTACTCAGGGAAGATCAAATCTTGAAAGAGAAGGATATGTTCTGCTTTTTCTTGAGGGAA
7967494 AATTAGATATG
258 AATTAGATATG
* *
7967505 GAAACATTGATTTATTCCACTGTTCTTTAGGGAAGATTGAATCGTGGTAGACTTGTTCCACTGTT
1 GAAACATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGTGGTAGACTTGTTCCACTGTT
7967570 ACTCAGGGAAGATCAAATC-T-AAAGAGATGGATCTGTTCCGCTTCTTCTTGAGAGAAAATCAGA
66 ACTCAGGGAAGATCAAATCTTGAAAGAGATGGATCTGTTCCGCTTCTTCTTGAGAGAAAATCAGA
* * * *
7967633 TCTGGAAACGTTGATTCATT-CACTGTTCTTCAGGGAAGATTGAATCAAGGCAAACTTGTTCCAC
131 TATGGAAACGTTGATTCATTCCACTATTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCAC
* * *
7967697 TGTTACTCAGGGAAGATCAAATCTTGAAAGAGATGGATTTGTTCCGCTTTTTCTTGAGGGAAAAT
196 TGTTACTCAGGGAAGATCAAATCTTGAAAGAGAAGGATATGTTCTGCTTTTTCTTGAGGGAAAAT
*
7967762 TAGATCTG
261 TAGATATG
*** * * * * *
7967770 GAATTGTTGATTCATTCCACGGTTATTCAGGGAAGATTGAGTCGCGGTAGACTTGTTCCACTATT
1 GAAACATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGTGGTAGACTTGTTCCACTGTT
* * * *
7967835 AC-CAAGGGAAGA-C-AATCTTGAAAGAGAGGGATTTGTTCCGCTTCTACTTGAGGGAAAATCAG
66 ACTC-AGGGAAGATCAAATCTTGAAAGAGATGGATCTGTTCCGCTTCTTCTTGAGAGAAAATCAG
* * * *
7967897 ATATGGAAATGTTGATTCATTCTACTATTCTTCAGGGAAGATTGAATCGAGGTAGACTTATTCCA
130 ATATGGAAACGTTGATTCATTCCACTATTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCA
* * * * *
7967962 CTGTTACTCGGGGAAGATCAAATCTTGAAAGATG-GGGATCTGTTCTACTTTTTCTTGAGGGGAA
195 CTGTTACTCAGGGAAGATCAAATCTTGAAAGA-GAAGGATATGTTCTGCTTTTTCTTGAGGGAAA
** *
7968026 ATTTTATTTG
259 ATTAGATATG
* * * *
7968036 GAAACATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAACCGAGGCAGACTTGTTCAACTGTT
1 GAAACATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGTGGTAGACTTGTTCCACTGTT
* * * *
7968101 ACTCAAGGAAGATCAAATCTTGAAAGATATGGACCTGTTTCGCTTCTTCTTGAGAGAAAATCAGA
66 ACTCAGGGAAGATCAAATCTTGAAAGAGATGGATCTGTTCCGCTTCTTCTTGAGAGAAAATCAGA
* * * * *
7968166 T-CGGAAGCGTTGATCCATTCCACTGGTT-TTCAGGAAAGATTGAATCGAGGCAGACTTGTTCCA
131 TATGGAAACGTTGATTCATTCCACT-ATTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCA
* * * * * * *
7968229 CTATTACTCAAGGAAGATCAAATCTTGAAAGAGATA-GATCTATTCCGCTTCTTCTTAAGGGAAA
195 CTGTTACTCAGGGAAGATCAAATCTTGAAAGAGA-AGGATATGTTCTGCTTTTTCTTGAGGGAAA
* * * *
7968293 ATCAGCTCTA
259 ATTAGATATG
** * * * *
7968303 GAAACGCTGATT-ATCCCACTGTTCTTCAAGGAATAATGAATCG
1 GAAACATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCG
7968346 AGTTCGATTT
Statistics
Matches: 714, Mismatches: 111, Indels: 31
0.83 0.13 0.04
Matches are distributed among these distances:
263 4 0.01
264 25 0.04
265 289 0.40
266 232 0.32
267 118 0.17
268 46 0.06
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (268 bp):
GAAACATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGTGGTAGACTTGTTCCACTGTT
ACTCAGGGAAGATCAAATCTTGAAAGAGATGGATCTGTTCCGCTTCTTCTTGAGAGAAAATCAGA
TATGGAAACGTTGATTCATTCCACTATTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCAC
TGTTACTCAGGGAAGATCAAATCTTGAAAGAGAAGGATATGTTCTGCTTTTTCTTGAGGGAAAAT
TAGATATG
Found at i:7968322 original size:133 final size:134
Alignment explanation
Indices: 7967230--7968347 Score: 1242
Period size: 134 Copynumber: 8.4 Consensus size: 134
7967220 TTCAGGGTAG
* * * * * * * *
7967230 ATCAGATC-GAGAAACGATT-ATTCATTCCACTTTTCTTTAGAGAATATTGAATCAATGTAGACC
1 ATCAGATCTG-GAAACG-TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACT
* * * * * * *
7967293 TATTGCACTGTTACTCA-GGAAGATCAAATATT-AATAGAGAAGGATTTGTTCTGCTT-TT-TTT
64 TGTTCCACTGTTACTCAGGGAAGATCAAATCTTGAA-AGAGATGGATCTGTTCCGCTTCTTCTTG
7967354 AGGGAAA
128 AGGGAAA
* * * * * * *
7967361 ATAAGATATGGAAATGTTGATTCGTTCCACTATTCTTCAGGGAAGATTGAATCTAGGCACACTTG
1 ATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTG
* * * ** * *
7967426 TTCCACTGTTACTCAGGGAAGATCAAATCTTAAAAGAGAAGGATATGTTTTGCTTATTCTTGAGA
66 TTCCACTGTTACTCAGGGAAGATCAAATCTTGAAAGAGATGGATCTGTTCCGCTTCTTCTTGAGG
7967491 GAAA
131 GAAA
* * * * * * *
7967495 ATTAGATATGGAAACATTGATTTATTCCACTGTTCTTTAGGGAAGATTGAATCGTGGTAGACTTG
1 ATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTG
*
7967560 TTCCACTGTTACTCAGGGAAGATCAAATC-T-AAAGAGATGGATCTGTTCCGCTTCTTCTTGAGA
66 TTCCACTGTTACTCAGGGAAGATCAAATCTTGAAAGAGATGGATCTGTTCCGCTTCTTCTTGAGG
7967623 GAAA
131 GAAA
* *
7967627 ATCAGATCTGGAAACGTTGATTCATT-CACTGTTCTTCAGGGAAGATTGAATCAAGGCAAACTTG
1 ATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTG
* *
7967691 TTCCACTGTTACTCAGGGAAGATCAAATCTTGAAAGAGATGGATTTGTTCCGCTTTTTCTTGAGG
66 TTCCACTGTTACTCAGGGAAGATCAAATCTTGAAAGAGATGGATCTGTTCCGCTTCTTCTTGAGG
7967756 GAAA
131 GAAA
* ** * * * * *
7967760 ATTAGATCTGGAATTGTTGATTCATTCCACGGTTATTCAGGGAAGATTGAGTCGCGGTAGACTTG
1 ATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTG
* * * *
7967825 TTCCACTATTAC-CAAGGGAAGA-C-AATCTTGAAAGAGAGGGATTTGTTCCGCTTCTACTTGAG
66 TTCCACTGTTACTC-AGGGAAGATCAAATCTTGAAAGAGATGGATCTGTTCCGCTTCTTCTTGAG
7967887 GGAAA
130 GGAAA
* * * * * *
7967892 ATCAGATATGGAAATGTTGATTCATTCTACTATTCTTCAGGGAAGATTGAATCGAGGTAGACTTA
1 ATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTG
* * ** *
7967957 TTCCACTGTTACTCGGGGAAGATCAAATCTTGAAAGATG-GGGATCTGTTCTACTTTTTCTTGAG
66 TTCCACTGTTACTCAGGGAAGATCAAATCTTGAAAGA-GATGGATCTGTTCCGCTTCTTCTTGAG
*
7968021 GGGAA
130 GGAAA
*** * * *
7968026 ATTTTATTTGGAAACATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAACCGAGGCAGACTTG
1 ATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTG
* * * * * *
7968091 TTCAACTGTTACTCAAGGAAGATCAAATCTTGAAAGATATGGACCTGTTTCGCTTCTTCTTGAGA
66 TTCCACTGTTACTCAGGGAAGATCAAATCTTGAAAGAGATGGATCTGTTCCGCTTCTTCTTGAGG
7968156 GAAA
131 GAAA
* * *
7968160 ATCAGATC-GGAAGCGTTGATCCATTCCACTGGTT-TTCAGGAAAGATTGAATCGAGGCAGACTT
1 ATCAGATCTGGAAACGTTGATTCATTCCACT-GTTCTTCAGGGAAGATTGAATCGAGGCAGACTT
* * * * *
7968223 GTTCCACTATTACTCAAGGAAGATCAAATCTTGAAAGAGATAGATCTATTCCGCTTCTTCTTAAG
65 GTTCCACTGTTACTCAGGGAAGATCAAATCTTGAAAGAGATGGATCTGTTCCGCTTCTTCTTGAG
7968288 GGAAA
130 GGAAA
* * * * * * *
7968293 ATCAGCTCTAGAAACGCTGATT-ATCCCACTGTTCTTCAAGGAATAATGAATCGAG
1 ATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAG
7968348 TTCGATTTGC
Statistics
Matches: 838, Mismatches: 131, Indels: 34
0.84 0.13 0.03
Matches are distributed among these distances:
130 2 0.00
131 122 0.15
132 206 0.25
133 204 0.24
134 303 0.36
135 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.32
Consensus pattern (134 bp):
ATCAGATCTGGAAACGTTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTG
TTCCACTGTTACTCAGGGAAGATCAAATCTTGAAAGAGATGGATCTGTTCCGCTTCTTCTTGAGG
GAAA
Found at i:7969090 original size:193 final size:190
Alignment explanation
Indices: 7968638--7969092 Score: 581
Period size: 192 Copynumber: 2.4 Consensus size: 190
7968628 TGGAAATTGT
* * *** *
7968638 TTTCTCATTTTTTCGGAAAATCATGCGAAAACATCCAACCCGAAAGTCTTATGGATGG-CTCGAA
1 TTTCTCA-TTTTTC-GAAAAACATGTGAAAACATCTTGCCC-AAGGTCTTATGGATGGCCT-GAA
* * * *
7968702 GGACTT-ATCATCTTGCTTGAAAGACTTACTAATGGCCCGAAGGAATCACCAATTTTGGAAATAG
62 GGACTTAAGCATCATGCTAGAAAGACTTACTAATGACCCGAAGGAATCACCAATTTTGGAAATAG
* * * ** *
7968766 TTTACTGGTAGGAAACTTTTCTTACTTTTCAAAAATTACAATTTTCATATTTAAATGTTAAACT
127 TTTACTGGTAAGAAACTTTTCTTACTTTTCAAAAATTACAATTTTCAGATTCAAATGAGAAACG
* * * *
7968830 TTTCTCATTTTTCCGAAATACATGTGAAAACATCTTGCCTGAAGGTCTTATGAATGACCTGAAGG
1 TTTCTCATTTTT-CGAAAAACATGTGAAAACATCTTGCC-CAAGGTCTTATGGATGGCCTGAAGG
* * * *
7968895 ACTTAAGCATCATGCTAGAAATACTTACTGATGACCCGAAGGACTTACCAATTTTGGAAATAGTT
64 ACTTAAGCATCATGCTAGAAAGACTTACTAATGACCCGAAGGAATCACCAATTTTGGAAATAGTT
**
7968960 TACTAGGTAAGAAACTTTTCTTACTTTTTCAAAAATTTTAATTTTCAGATTCAATATGAGAAACG
129 TACT-GGTAAGAAACTTTTCTTAC-TTTTCAAAAATTACAATTTTCAGATTCAA-ATGAGAAACG
7969025 TTTCTCATTTTTCGAAAAACATGTGAAAACATCTTGCCCAAGGTCTTATGGATGGCCTGAAGGAC
1 TTTCTCATTTTTCGAAAAACATGTGAAAACATCTTGCCCAAGGTCTTATGGATGGCCTGAAGGAC
7969090 TTA
66 TTA
7969093 TCATCTTGCT
Statistics
Matches: 226, Mismatches: 30, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
191 46 0.20
192 66 0.29
193 45 0.20
194 50 0.22
195 19 0.08
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (190 bp):
TTTCTCATTTTTCGAAAAACATGTGAAAACATCTTGCCCAAGGTCTTATGGATGGCCTGAAGGAC
TTAAGCATCATGCTAGAAAGACTTACTAATGACCCGAAGGAATCACCAATTTTGGAAATAGTTTA
CTGGTAAGAAACTTTTCTTACTTTTCAAAAATTACAATTTTCAGATTCAAATGAGAAACG
Found at i:7969113 original size:40 final size:41
Alignment explanation
Indices: 7969054--7969155 Score: 120
Period size: 40 Copynumber: 2.5 Consensus size: 41
7969044 CATGTGAAAA
* * *
7969054 CATCTTGC-CCAAGGTCTTATGGATGGCCTGAAGGACTT-A-T
1 CATCTTGCTCAAAGG-CTTATAGATGACCTGAAGGA-TTAACT
7969094 CATCTTGCTCAAAGGCTTATAGATGACCTGAAGGATTAACT
1 CATCTTGCTCAAAGGCTTATAGATGACCTGAAGGATTAACT
* *
7969135 CATCATGCTCAAAGACTTATA
1 CATCTTGCTCAAAGGCTTATA
7969156 CCAATTTTAG
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
39 2 0.04
40 27 0.50
41 25 0.46
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (41 bp):
CATCTTGCTCAAAGGCTTATAGATGACCTGAAGGATTAACT
Found at i:7969148 original size:41 final size:40
Alignment explanation
Indices: 7969064--7969155 Score: 114
Period size: 41 Copynumber: 2.2 Consensus size: 40
7969054 CATCTTGCCC
* * *
7969064 AAGGTCTTATGGATGGCCTGAAGGACTTATCATCTTGCTCA
1 AAGG-CTTATAGATGACCTGAAGGACTTATCATCATGCTCA
7969105 AAGGCTTATAGATGACCTGAAGGA-TTAACTCATCATGCTCA
1 AAGGCTTATAGATGACCTGAAGGACTT-A-TCATCATGCTCA
*
7969146 AAGACTTATA
1 AAGGCTTATA
7969156 CCAATTTTAG
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
39 2 0.04
40 19 0.42
41 24 0.53
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (40 bp):
AAGGCTTATAGATGACCTGAAGGACTTATCATCATGCTCA
Found at i:7974756 original size:130 final size:130
Alignment explanation
Indices: 7974523--7974756 Score: 355
Period size: 130 Copynumber: 1.8 Consensus size: 130
7974513 TTTTAAGAGA
* * * *
7974523 GAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACGTTTCATGCCTTAAAAAAATCA
1 GAAAACGATAATATCTAATGATTTCCAATCGAGAACAAATGACCTTTCATACCTTAAAAAAATCA
*
7974588 TTTATTACTCCAATCGAAATAAATAGATATTACTATTCTATCATATAAATCAATATGATTCGAGT
66 TTTATTACTCCAACCGAAATAAATAGATATTACTATTCTATCATATAAATCAATATGATTCGAGT
* ** *
7974653 GAAAATGATAATATCTAATGATTTCCAATCGAGAACAAATGACCTCTT-ATACCTTAAAGCATTC
1 GAAAACGATAATATCTAATGATTTCCAATCGAGAACAAATGACCT-TTCATACCTTAAAAAAATC
7974717 ATTTATTACTCCAACCGAAATGAAA-AGATATTACTATTCT
65 ATTTATTACTCCAACCGAAAT-AAATAGATATTACTATTCT
7974757 CAATATCGAT
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
130 88 0.95
131 5 0.05
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.33
Consensus pattern (130 bp):
GAAAACGATAATATCTAATGATTTCCAATCGAGAACAAATGACCTTTCATACCTTAAAAAAATCA
TTTATTACTCCAACCGAAATAAATAGATATTACTATTCTATCATATAAATCAATATGATTCGAGT
Found at i:7977105 original size:97 final size:97
Alignment explanation
Indices: 7976985--7977175 Score: 382
Period size: 97 Copynumber: 2.0 Consensus size: 97
7976975 GTGGATTGTG
7976985 CATGTGCATGTGCATGAATTAACTTAGGATGAACAATTCAATCGTGAAAATATATTTCGCATGGG
1 CATGTGCATGTGCATGAATTAACTTAGGATGAACAATTCAATCGTGAAAATATATTTCGCATGGG
7977050 CCAGTGGAACACATAAGAAAAAGACAGCGGTA
66 CCAGTGGAACACATAAGAAAAAGACAGCGGTA
7977082 CATGTGCATGTGCATGAATTAACTTAGGATGAACAATTCAATCGTGAAAATATATTTCGCATGGG
1 CATGTGCATGTGCATGAATTAACTTAGGATGAACAATTCAATCGTGAAAATATATTTCGCATGGG
7977147 CCAGTGGAACACATAAGAAAAAGACAGCG
66 CCAGTGGAACACATAAGAAAAAGACAGCG
7977176 AGGAACAAAT
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 94 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.24
Consensus pattern (97 bp):
CATGTGCATGTGCATGAATTAACTTAGGATGAACAATTCAATCGTGAAAATATATTTCGCATGGG
CCAGTGGAACACATAAGAAAAAGACAGCGGTA
Found at i:7979859 original size:15 final size:15
Alignment explanation
Indices: 7979839--7979873 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
7979829 ATGGGCAACT
*
7979839 ACAACCAAAGTAATA
1 ACAACCAAAGCAATA
7979854 ACAACCAAAGCAATA
1 ACAACCAAAGCAATA
7979869 A-AACC
1 ACAACC
7979874 CATACTCGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.60, C:0.26, G:0.06, T:0.09
Consensus pattern (15 bp):
ACAACCAAAGCAATA
Found at i:7980552 original size:15 final size:15
Alignment explanation
Indices: 7980532--7980566 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
7980522 ATGGGCAACT
*
7980532 ACAACCAAAGTAATA
1 ACAACCAAAGCAATA
7980547 ACAACCAAAGCAATA
1 ACAACCAAAGCAATA
7980562 A-AACC
1 ACAACC
7980567 CATACTCGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.60, C:0.26, G:0.06, T:0.09
Consensus pattern (15 bp):
ACAACCAAAGCAATA
Found at i:7980675 original size:693 final size:694
Alignment explanation
Indices: 7979349--7980738 Score: 2737
Period size: 693 Copynumber: 2.0 Consensus size: 694
7979339 AACACACAGA
7979349 TACGCAATGACATTGTAAGTTTTCACCAAGGCAACGATGAATCCATGTACGAATATTGGGACTGA
1 TACGCAATGACATTGTAAGTTTTCACCAAGGCAACGATGAATCCATGTACGAATATTGGGACTGA
7979414 TATAAAAGTCTGCTTCGCAAGTGTGTAAACCATGGATTTCATGACTAGACTCAAGTTGTGATGTT
66 TATAAAAGTCTGCTTCGCAAGTGTGTAAACCATGGATTTCATGACTAGACTCAAGTTGTGATGTT
7979479 TATTAATGGAGTCAACGCACCTACTCAAATGATGTTGGATGCCTCAGCGAATTGTACTTTGCTTG
131 TATTAATGGAGTCAACGCACCTACTCAAATGATGTTGGATGCCTCAGCGAATTGTACTTTGCTTG
7979544 ATAAATCACATGAGGAAGCCTTCGGTATTCTCGACAGGATAGCAAATAATGACTATCAATTCCCA
196 ATAAATCACATGAGGAAGCCTTCGGTATTCTCGACAGGATAGCAAATAATGACTATCAATTCCCA
*
7979609 TCTACAAGGCAGGGAACCCGGTAGAAAAGTATCTGGAGCGTATGAAATTGAGGGTAAGGATTCAG
261 TCTACAAGGCAGGGAACCCGGTAGAAAAGTATCTGGAGCATATGAAATTGAGGGTAAGGATTCAG
7979674 TTTCTGCTAAACTTTCTGTCATAACTAACATGTTGAAAAATTTACAGCATCTTAATGAGGTGAGA
326 TTTCTGCTAAACTTTCTGTCATAACTAACATGTTGAAAAATTTACAGCATCTTAATGAGGTGAGA
7979739 GAAGTCAAGGCAAATAGTGTTGCATGCATTTTTTGTCGTGGCAACCACCATGAGAGTGAATGTCC
391 GAAGTCAAGGCAAATAGTGTTGCATGCATTTTTTGTCGTGGCAACCACCATGAGAGTGAATGTCC
7979804 AGAAAACTAGGAGTCCATCAATTTTATGGGCAACTACAACCAAAGTAATAACAACCAAAGCAATA
456 AGAAAACTAGGAGTCCATCAATTTTATGGGCAACTACAACCAAAGTAATAACAACCAAAGCAATA
7979869 AAACCCATACTCGAATATATACAATCCTAGATGGCGACAACATCCAAATTTTTCATAGGGTGGTC
521 AAACCCATACTCGAATATATACAATCCTAGATGGCGACAACATCCAAATTTTTCATAGGGTGGTC
*
7979934 AAGGGACCAACAACAACAATCAGGTAGACAATTATAATAAGCCACAACAGAATAATTCGGAACAT
586 AAGGGACCAACAACAACAATCAGGTAGACAATTATAATAAGCCACAACAGAATAATTCGAAACAT
*
7979999 CAAAATTTTCAACATCAGAAGATGCCTTGGCAAGATACTAAAGG
651 CAAAATTTTCAACATCAGAAGATGCCTTGGCAACATACTAAAGG
7980043 TACGCAATGACATTGTAAGTTTTCACCAAGGCAACGATGAATCCATGTACGAATATTGGGACTGA
1 TACGCAATGACATTGTAAGTTTTCACCAAGGCAACGATGAATCCATGTACGAATATTGGGACTGA
7980108 TATAAAAGTCTGCTTCGCAAGTGTGTAAACCATGGATTTCATGACTAGACTCAAGTTGTGATGTT
66 TATAAAAGTCTGCTTCGCAAGTGTGTAAACCATGGATTTCATGACTAGACTCAAGTTGTGATGTT
*
7980173 TATTAATGGAGTCAACGCACCTACTCAAATGATGTTGGATGCCTCAGTGAATTGTACTTTGCTTG
131 TATTAATGGAGTCAACGCACCTACTCAAATGATGTTGGATGCCTCAGCGAATTGTACTTTGCTTG
7980238 ATAAATCACATGAGGAAGCCTTCGGTATTCTCGACAGGATAGCAAATAATGACTATCAATTCCCA
196 ATAAATCACATGAGGAAGCCTTCGGTATTCTCGACAGGATAGCAAATAATGACTATCAATTCCCA
7980303 TCTACAAGGCAGGGAA-CCGGTAGAAAAGTATCTGGAGCATATGAAATTGAGGGTAAGGATTCAG
261 TCTACAAGGCAGGGAACCCGGTAGAAAAGTATCTGGAGCATATGAAATTGAGGGTAAGGATTCAG
7980367 TTTCTGCTAAACTTTCTGTCATAACTAACATGTTGAAAAATTTACAGCATCTTAATGAGGTGAGA
326 TTTCTGCTAAACTTTCTGTCATAACTAACATGTTGAAAAATTTACAGCATCTTAATGAGGTGAGA
7980432 GAAGTCAAGGCAAATAGTGTTGCATGCATTTTTTGTCGTGGCAACCACCATGAGAGTGAATGTCC
391 GAAGTCAAGGCAAATAGTGTTGCATGCATTTTTTGTCGTGGCAACCACCATGAGAGTGAATGTCC
7980497 AGAAAACTAGGAGTCCATCAATTTTATGGGCAACTACAACCAAAGTAATAACAACCAAAGCAATA
456 AGAAAACTAGGAGTCCATCAATTTTATGGGCAACTACAACCAAAGTAATAACAACCAAAGCAATA
7980562 AAACCCATACTCGAATATATACAATCCTAGATGGCGACAACATCCAAATTTTTCATAGGGTGGTC
521 AAACCCATACTCGAATATATACAATCCTAGATGGCGACAACATCCAAATTTTTCATAGGGTGGTC
7980627 AAGGGACCAACAACAACAATCAGGTAGACAATTATAATAAGCCACAACAGAATAATTCGAAACAT
586 AAGGGACCAACAACAACAATCAGGTAGACAATTATAATAAGCCACAACAGAATAATTCGAAACAT
7980692 CAAAATTTTCAACATCAGAAGATGCCTTGGCAACATACTAAAGG
651 CAAAATTTTCAACATCAGAAGATGCCTTGGCAACATACTAAAGG
7980736 TAC
1 TAC
7980739 AATTTCTTCC
Statistics
Matches: 692, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
693 417 0.60
694 275 0.40
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (694 bp):
TACGCAATGACATTGTAAGTTTTCACCAAGGCAACGATGAATCCATGTACGAATATTGGGACTGA
TATAAAAGTCTGCTTCGCAAGTGTGTAAACCATGGATTTCATGACTAGACTCAAGTTGTGATGTT
TATTAATGGAGTCAACGCACCTACTCAAATGATGTTGGATGCCTCAGCGAATTGTACTTTGCTTG
ATAAATCACATGAGGAAGCCTTCGGTATTCTCGACAGGATAGCAAATAATGACTATCAATTCCCA
TCTACAAGGCAGGGAACCCGGTAGAAAAGTATCTGGAGCATATGAAATTGAGGGTAAGGATTCAG
TTTCTGCTAAACTTTCTGTCATAACTAACATGTTGAAAAATTTACAGCATCTTAATGAGGTGAGA
GAAGTCAAGGCAAATAGTGTTGCATGCATTTTTTGTCGTGGCAACCACCATGAGAGTGAATGTCC
AGAAAACTAGGAGTCCATCAATTTTATGGGCAACTACAACCAAAGTAATAACAACCAAAGCAATA
AAACCCATACTCGAATATATACAATCCTAGATGGCGACAACATCCAAATTTTTCATAGGGTGGTC
AAGGGACCAACAACAACAATCAGGTAGACAATTATAATAAGCCACAACAGAATAATTCGAAACAT
CAAAATTTTCAACATCAGAAGATGCCTTGGCAACATACTAAAGG
Found at i:7980765 original size:12 final size:12
Alignment explanation
Indices: 7980748--7980774 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7980738 CAATTTCTTC
7980748 CTCTAATACTAA
1 CTCTAATACTAA
7980760 CTCTAATACTAA
1 CTCTAATACTAA
7980772 CTC
1 CTC
7980775 CTTGGAAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.30, G:0.00, T:0.33
Consensus pattern (12 bp):
CTCTAATACTAA
Found at i:7980835 original size:21 final size:21
Alignment explanation
Indices: 7980797--7980836 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7980787 ACTGTAGAAA
* *
7980797 TTTATGGCCTCGATAAAATAT
1 TTTATGGCCTCAACAAAATAT
*
7980818 TTTATGGCTTCAACAAAAT
1 TTTATGGCCTCAACAAAAT
7980837 CTTTGATCCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (21 bp):
TTTATGGCCTCAACAAAATAT
Found at i:7994505 original size:23 final size:23
Alignment explanation
Indices: 7994479--7994529 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
7994469 TCTAAAATTA
* *
7994479 CTGACCGAACCTTTTGGAAGCTG
1 CTGACCGAACCTTCTAGAAGCTG
** *
7994502 CTGAATGGACCTTCTAGAAGCTG
1 CTGACCGAACCTTCTAGAAGCTG
7994525 CTGAC
1 CTGAC
7994530 AAACTACTAC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (23 bp):
CTGACCGAACCTTCTAGAAGCTG
Found at i:8008453 original size:25 final size:25
Alignment explanation
Indices: 8008425--8008477 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
8008415 TATTTTGAAT
*
8008425 TCAAAGAAGCCCCTTAATTTGAAAA
1 TCAAACAAGCCCCTTAATTTGAAAA
* *
8008450 TC-AACCAGCCCCTTAGTTTGAAAA
1 TCAAACAAGCCCCTTAATTTGAAAA
8008474 TCAA
1 TCAA
8008478 CCGGCCTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.40, C:0.25, G:0.11, T:0.25
Consensus pattern (25 bp):
TCAAACAAGCCCCTTAATTTGAAAA
Found at i:8008459 original size:24 final size:24
Alignment explanation
Indices: 8008432--8008479 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
8008422 AATTCAAAGA
8008432 AGCCCCTTAATTTGAAAATCAACC
1 AGCCCCTTAATTTGAAAATCAACC
*
8008456 AGCCCCTTAGTTTGAAAATCAACC
1 AGCCCCTTAATTTGAAAATCAACC
8008480 GGCCTTCTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.29, G:0.10, T:0.25
Consensus pattern (24 bp):
AGCCCCTTAATTTGAAAATCAACC
Found at i:8012931 original size:25 final size:25
Alignment explanation
Indices: 8012903--8012955 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
8012893 TATTTTGAAT
*
8012903 TCAAAGCAGCCCCTTAATTTGAAAA
1 TCAAACCAGCCCCTTAATTTGAAAA
*
8012928 TC-AACCAGCCCCTTAGTTTGAAAA
1 TCAAACCAGCCCCTTAATTTGAAAA
8012952 TCAA
1 TCAA
8012956 CCGGCCTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.38, C:0.26, G:0.11, T:0.25
Consensus pattern (25 bp):
TCAAACCAGCCCCTTAATTTGAAAA
Found at i:8014789 original size:42 final size:42
Alignment explanation
Indices: 8014727--8015085 Score: 280
Period size: 42 Copynumber: 8.7 Consensus size: 42
8014717 GGATTATACA
* ** *
8014727 ATTGCGACATTTATTCCAAAAACGTTGCTAAGGTGCATGACT
1 ATTGCGACATTTATTACAAAAACGCCGCTAAAGTGCATGACT
* * * ** *
8014769 ATAGCGACGTTTATTACAAAAACACTTCTAAAGTGCATGATT
1 ATTGCGACATTTATTACAAAAACGCCGCTAAAGTGCATGACT
* * * *** *
8014811 ATTGCGGCGTTTATTGCAAAAATATCACTAAAGTGCATGACT
1 ATTGCGACATTTATTACAAAAACGCCGCTAAAGTGCATGACT
*** * *
8014853 ATTGC-AGCATTTATTAC-AAAACGCAATTACAGTTCATGACT
1 ATTGCGA-CATTTATTACAAAAACGCCGCTAAAGTGCATGACT
* * * * * *
8014894 ATTGTGGC-TTT-TAATAAAATCGCCGCTAAAGTGCAAGACT
1 ATTGCGACATTTATTACAAAAACGCCGCTAAAGTGCATGACT
** * * *
8014934 ATTATGGCATTTATTACAAAAACGCCACTAAAGTGCATGATT
1 ATTGCGACATTTATTACAAAAACGCCGCTAAAGTGCATGACT
* * *
8014976 ATTGCGGCATTTA-T-CAAAATCGCTGCTAAAGTGCATGACT
1 ATTGCGACATTTATTACAAAAACGCCGCTAAAGTGCATGACT
* * *
8015016 ATTGCGACGTTTATTACAAAAAGGCCGCTAAGGTGCATGACT
1 ATTGCGACATTTATTACAAAAACGCCGCTAAAGTGCATGACT
****
8015058 ATTGCGGTGCTTATTACAAAAACGCCGC
1 ATTGCGACATTTATTACAAAAACGCCGC
8015086 CTTATAAGTG
Statistics
Matches: 250, Mismatches: 60, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
39 2 0.01
40 60 0.24
41 27 0.11
42 161 0.64
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (42 bp):
ATTGCGACATTTATTACAAAAACGCCGCTAAAGTGCATGACT
Done.