Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10629029
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 39 of 51
Found at i:8015006 original size:82 final size:81
Alignment explanation
Indices: 8014753--8015064 Score: 304
Period size: 82 Copynumber: 3.8 Consensus size: 81
8014743 CAAAAACGTT
* * * * * ** *
8014753 GCTAAGGTGCATGACTATAGCGACGTTTATTACAAAAACACTTCTAAAGTGCATGATTATTGCGG
1 GCTAAAGTGCATGACTATTGCGGCATTTATTACAAAAACGCCACTAAAGTGCATGACTATTGCGG
* **
8014818 CGTTTATTGCAAAAATATC
66 CATTTA-T-C-AAAATCGC
* * * * * * *
8014837 ACTAAAGTGCATGACTATTGCAGCATTTATTAC-AAAACGCAATTACAGTTCATGACTATTGTGG
1 GCTAAAGTGCATGACTATTGCGGCATTTATTACAAAAACGCCACTAAAGTGCATGACTATTGCGG
*
8014901 CTTTTAAT-AAAATCGCC
66 CATTT-ATCAAAATCG-C
* ** *
8014918 GCTAAAGTGCAAGACTATTATGGCATTTATTACAAAAACGCCACTAAAGTGCATGATTATTGCGG
1 GCTAAAGTGCATGACTATTGCGGCATTTATTACAAAAACGCCACTAAAGTGCATGACTATTGCGG
8014983 CATTTATCAAAATCGC
66 CATTTATCAAAATCGC
* * * * *
8014999 TGCTAAAGTGCATGACTATTGCGACGTTTATTACAAAAAGGCCGCTAAGGTGCATGACTATTGCG
1 -GCTAAAGTGCATGACTATTGCGGCATTTATTACAAAAACGCCACTAAAGTGCATGACTATTGCG
8015064 G
65 G
8015065 TGCTTATTAC
Statistics
Matches: 185, Mismatches: 38, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
80 5 0.03
81 32 0.17
82 92 0.50
83 28 0.15
84 28 0.15
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (81 bp):
GCTAAAGTGCATGACTATTGCGGCATTTATTACAAAAACGCCACTAAAGTGCATGACTATTGCGG
CATTTATCAAAATCGC
Found at i:8015300 original size:16 final size:15
Alignment explanation
Indices: 8015269--8015302 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
8015259 TTATTGGTAC
*
8015269 TATTTATATTACTAT
1 TATTTATATTAATAT
8015284 TATTTACTATTAATAT
1 TATTTA-TATTAATAT
8015300 TAT
1 TAT
8015303 GATTTATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTTATATTAATAT
Found at i:8015379 original size:23 final size:23
Alignment explanation
Indices: 8015319--8015380 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 23
8015309 TTATGACCTC
8015319 AAAAAGAAGAAAAAGGAAAAAGG
1 AAAAAGAAGAAAAAGGAAAAAGG
*
8015342 AAAAAAAAGATAAAA-GATAAAA-G
1 AAAAAGAAGA-AAAAGGA-AAAAGG
8015365 AAAAAGAGGAGAAAAA
1 AAAAAGA--AGAAAAA
8015381 TGATAATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
23 18 0.55
24 12 0.36
25 3 0.09
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (23 bp):
AAAAAGAAGAAAAAGGAAAAAGG
Found at i:8015386 original size:32 final size:30
Alignment explanation
Indices: 8015325--8015386 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 30
8015315 CCTCAAAAAG
*
8015325 AAGAAAAAGGAAAAAGGAAAAAAAAGATAA
1 AAGAAAAAGAAAAAAGGAAAAAAAAGATAA
* *
8015355 AAGATAAAAGAAAAAGAGGAGAAAAATGATAA
1 AAGA-AAAAGAAAAA-AGGAAAAAAAAGATAA
8015387 TTTTCAGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 4 0.15
31 9 0.33
32 14 0.52
ACGTcount: A:0.73, C:0.00, G:0.21, T:0.06
Consensus pattern (30 bp):
AAGAAAAAGAAAAAAGGAAAAAAAAGATAA
Found at i:8018412 original size:200 final size:200
Alignment explanation
Indices: 8017966--8018643 Score: 728
Period size: 200 Copynumber: 3.4 Consensus size: 200
8017956 TGTAGCATTT
*
8017966 CAACTTATCTTTCAGTTGAGGCTAATATTTGCACATACGAA-ATATTATAAAC-GTGGTAAAAAT
1 CAACTTATCTTTCAGTTGAGGCTAATATTGGCACATAC-AAGATATTATAAACAG-GGTAAAAAT
* * * * *
8018029 CACATTGAAAATAGTTTCAAAGCTTAGTTATGTGCATGACGAACAAGCTAAAATGGCTTGATAGG
64 CGCGTTGAAAATAGTTTCAAAGTTTAGTTTTGTGCATGAAGAACAAGCTAAAATGGCTTGATAGG
* * * * *
8018094 CATGTTCGAGGGATATTTTCAGGTAGTTAATC-G--ATTTTTTATAA-TGTTAAGCATAGAGGCA
129 CATGTTCGAGGG-TATTTTCAGGAAGTTAATCAGAAAATTTTTATAATTTTTAAGCTTAGAAGCA
8018155 TAATATTG
193 TAATATTG
* * * * * * *
8018163 CAACCTATCTTTTAGTTGAGACTAATATAGGCTCATACGAGACATTATAAACAGGGTAAAAAGT-
1 CAACTTATCTTTCAGTTGAGGCTAATATTGGCACATACAAGATATTATAAACAGGGTAAAAA-TC
* * * * * * * *
8018227 GCGTTTAAAATGGTTTTAAAGTTTGGTTTTATGCGTGAAAAACAAGCTAAAATGGCTTTATAGGC
65 GCGTTGAAAATAGTTTCAAAGTTTAGTTTTGTGCATGAAGAACAAGCTAAAATGGCTTGATAGGC
* * *
8018292 ATGTTTGAGGGTATTTTCAGGGAGTTAATCAGAAAATGTTTATAATTTTTAAGCTTAGAAGCATA
130 ATGTTCGAGGGTATTTTCAGGAAGTTAATCAGAAAATTTTTATAATTTTTAAGCTTAGAAGCATA
8018357 ATATTG
195 ATATTG
* * ** *
8018363 CAACTTATCTTTCAGTTGAGGCTAATATCGGCACATACAAGATATTATAAGCAGGACAAAAATTG
1 CAACTTATCTTTCAGTTGAGGCTAATATTGGCACATACAAGATATTATAAACAGGGTAAAAATCG
* * * * * *
8018428 TGTTGAAAATGGTTCCAAA-TCTTTGTTTTGTGCATGAGGAACAAACTAAAATGGCTTGATAGGC
66 CGTTGAAAATAGTTTCAAAGT-TTAGTTTTGTGCATGAAGAACAAGCTAAAATGGCTTGATAGGC
* * * * *
8018492 ATGTTCAAGGGGTATTATC-GAGAAGTTAATTAGAAACTTTTTATATTTTTTAAGCTTA-AAGGC
130 ATGTTCGA-GGGTATTTTCAG-GAAGTTAATCAGAAAATTTTTATAATTTTTAAGCTTAGAA-GC
*
8018555 GTAATATTG
192 ATAATATTG
* * * * * * * *
8018564 CAATTTGTCTTTCGGTTGAGGCTAATATTAGTACATACGATATATTATAAGCAGGGTAAAAATCG
1 CAACTTATCTTTCAGTTGAGGCTAATATTGGCACATACAAGATATTATAAACAGGGTAAAAATCG
8018629 CGTTGAAAATAGTTT
66 CGTTGAAAATAGTTT
8018644 GAAACCAAAA
Statistics
Matches: 397, Mismatches: 72, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
196 19 0.05
197 113 0.28
198 2 0.01
199 11 0.03
200 135 0.34
201 117 0.29
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.34
Consensus pattern (200 bp):
CAACTTATCTTTCAGTTGAGGCTAATATTGGCACATACAAGATATTATAAACAGGGTAAAAATCG
CGTTGAAAATAGTTTCAAAGTTTAGTTTTGTGCATGAAGAACAAGCTAAAATGGCTTGATAGGCA
TGTTCGAGGGTATTTTCAGGAAGTTAATCAGAAAATTTTTATAATTTTTAAGCTTAGAAGCATAA
TATTG
Found at i:8021906 original size:17 final size:17
Alignment explanation
Indices: 8021880--8021934 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 17
8021870 TTTTTCTTTC
*
8021880 TTTTTCTTTCGAACAGT
1 TTTTTTTTTCGAACAGT
*
8021897 TTTTTTTTTCGAACTGCT
1 TTTTTTTTTCGAACAG-T
*
8021915 ATTTTTTTTC-AACA-T
1 TTTTTTTTTCGAACAGT
8021930 TTTTT
1 TTTTT
8021935 GTGATGGAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
15 5 0.16
17 17 0.53
18 10 0.31
ACGTcount: A:0.16, C:0.15, G:0.07, T:0.62
Consensus pattern (17 bp):
TTTTTTTTTCGAACAGT
Found at i:8021919 original size:18 final size:17
Alignment explanation
Indices: 8021880--8021928 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
8021870 TTTTTCTTTC
*
8021880 TTTTTCTTTCGAACAGTT
1 TTTTT-TTTCGAACAGTA
*
8021898 TTTTTTTTCGAACTGCTA
1 TTTTTTTTCGAACAG-TA
8021916 TTTTTTTTC-AACA
1 TTTTTTTTCGAACA
8021929 TTTTTTGTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.18, C:0.16, G:0.08, T:0.57
Consensus pattern (17 bp):
TTTTTTTTCGAACAGTA
Found at i:8028408 original size:30 final size:30
Alignment explanation
Indices: 8028372--8028435 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
8028362 CCAAAGTAGT
*
8028372 AATAATTCCTCCTTTTGACATATTTTTTAG
1 AATAATTCCTCCTTTTGACATATTTTTGAG
8028402 AATAATTCCTCCTTTTGACATATTTTTGAG
1 AATAATTCCTCCTTTTGACATATTTTTGAG
8028432 AATA
1 AATA
8028436 TCTACAATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.47
Consensus pattern (30 bp):
AATAATTCCTCCTTTTGACATATTTTTGAG
Found at i:8034601 original size:29 final size:26
Alignment explanation
Indices: 8034536--8034586 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
8034526 ATAAAATATC
8034536 AAAGTTTTATATTATTATATCTACTT
1 AAAGTTTTATATTATTATATCTACTT
8034562 AAAGTTTTATATTATTATATCTACT
1 AAAGTTTTATATTATTATATCTACT
8034587 ACTTATAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.53
Consensus pattern (26 bp):
AAAGTTTTATATTATTATATCTACTT
Found at i:8047067 original size:17 final size:17
Alignment explanation
Indices: 8047045--8047088 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
8047035 ATCAGTTAAT
8047045 GGGTCGAGTCGATCAAC
1 GGGTCGAGTCGATCAAC
*
8047062 GGGTCG-GATCGATCAAT
1 GGGTCGAG-TCGATCAAC
*
8047079 GGGTTGAGTC
1 GGGTCGAGTC
8047089 AATGGGTCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 1 0.04
17 21 0.91
18 1 0.04
ACGTcount: A:0.20, C:0.18, G:0.39, T:0.23
Consensus pattern (17 bp):
GGGTCGAGTCGATCAAC
Found at i:8047713 original size:26 final size:25
Alignment explanation
Indices: 8047677--8047734 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 25
8047667 TTTATTAAAG
8047677 TTTTCTCTTTTATTTTACTTTTCAAGT
1 TTTTCT-TTTTATTTTA-TTTTCAAGT
*
8047704 TTTTCATTTTTCTTTTATTTTCAAGCT
1 TTTTC-TTTTTATTTTATTTTCAAG-T
8047731 TTTT
1 TTTT
8047735 TTTAATATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 8 0.29
27 19 0.68
28 1 0.04
ACGTcount: A:0.14, C:0.14, G:0.03, T:0.69
Consensus pattern (25 bp):
TTTTCTTTTTATTTTATTTTCAAGT
Found at i:8058620 original size:18 final size:18
Alignment explanation
Indices: 8058599--8058635 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8058589 ATCTTTATTT
*
8058599 ATTTAATCTCTTTTTACC
1 ATTTAATCTCATTTTACC
*
8058617 ATTTAATTTCATTTTACC
1 ATTTAATCTCATTTTACC
8058635 A
1 A
8058636 AAACCTCCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.19, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTTAATCTCATTTTACC
Found at i:8064767 original size:28 final size:28
Alignment explanation
Indices: 8064733--8064866 Score: 171
Period size: 28 Copynumber: 4.8 Consensus size: 28
8064723 AAAATCACAG
* *
8064733 TGGGGAATAACTCCCATATAGAACAGAT
1 TGGGGAATAAATCCCATACAGAACAGAT
* * *
8064761 TGGGGAATAAATCACATACAAAACAGAG
1 TGGGGAATAAATCCCATACAGAACAGAT
* * *
8064789 CGAGGAATAACTCCCATACAGAACAGAT
1 TGGGGAATAAATCCCATACAGAACAGAT
* *
8064817 CGGGGAATAAATCCCATACA-AATAGAT
1 TGGGGAATAAATCCCATACAGAACAGAT
8064844 TGGGGAATAAATCCCATACAGAA
1 TGGGGAATAAATCCCATACAGAA
8064867 ACATGAATGT
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 25 0.28
28 65 0.72
ACGTcount: A:0.44, C:0.19, G:0.20, T:0.17
Consensus pattern (28 bp):
TGGGGAATAAATCCCATACAGAACAGAT
Found at i:8065502 original size:17 final size:17
Alignment explanation
Indices: 8065476--8065521 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
8065466 AAATTCAACC
8065476 GTCAATGGGTCAGCTCG
1 GTCAATGGGTCAGCTCG
* * *
8065493 GTCAACGGGTTAGGTCG
1 GTCAATGGGTCAGCTCG
*
8065510 ATCAATGGGTCA
1 GTCAATGGGTCA
8065522 TGTCAACTGG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.22, C:0.20, G:0.35, T:0.24
Consensus pattern (17 bp):
GTCAATGGGTCAGCTCG
Found at i:8069710 original size:42 final size:39
Alignment explanation
Indices: 8069643--8069766 Score: 151
Period size: 39 Copynumber: 3.1 Consensus size: 39
8069633 TCGTCATATC
*
8069643 GTTCATCAATGTCAGGTTGATGTTGAATCTCATCATCTT
1 GTTCATCAATGCCAGGTTGATGTTGAATCTCATCATCTT
8069682 GTTCATCAATGCCATGTTGTTGATGTTGAATCTCATCATCTT
1 GTTCATCAATGCCA-G--GTTGATGTTGAATCTCATCATCTT
* * ** *
8069724 GTGCAGCGGTGCTAGGTTGATGTTGAATCTCA-CTATCTT
1 GTTCATCAATGCCAGGTTGATGTTGAATCTCATC-ATCTT
8069763 GTTC
1 GTTC
8069767 GTTGGTCCTA
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 38 0.51
40 1 0.01
41 1 0.01
42 33 0.45
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.40
Consensus pattern (39 bp):
GTTCATCAATGCCAGGTTGATGTTGAATCTCATCATCTT
Found at i:8069718 original size:39 final size:38
Alignment explanation
Indices: 8069629--8069766 Score: 125
Period size: 39 Copynumber: 3.5 Consensus size: 38
8069619 CAGAATTAAA
* * * *
8069629 GAACTCGTCATATCGTTCATCAATGTCAGGTTGATGTT
1 GAACTCATCATCTTGTTCATCAATGCCAGGTTGATGTT
8069667 GAATCTCATCATCTTGTTCATCAATGCCATGTTGTTGATGTT
1 GAA-CTCATCATCTTGTTCATCAATGCCA-G--GTTGATGTT
* * ** *
8069709 GAATCTCATCATCTTGTGCAGCGGTGCTAGGTTGATGTT
1 GAA-CTCATCATCTTGTTCATCAATGCCAGGTTGATGTT
8069748 GAATCTCA-CTATCTTGTTC
1 GAA-CTCATC-ATCTTGTTC
8069767 GTTGGTCCTA
Statistics
Matches: 85, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
38 4 0.05
39 46 0.54
40 1 0.01
41 1 0.01
42 33 0.39
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (38 bp):
GAACTCATCATCTTGTTCATCAATGCCAGGTTGATGTT
Found at i:8069783 original size:39 final size:39
Alignment explanation
Indices: 8069701--8069795 Score: 122
Period size: 39 Copynumber: 2.4 Consensus size: 39
8069691 TGCCATGTTG
* *
8069701 TTGATGTTGAATCTCATCATCTTGTGCAGCGGTGCTAGG
1 TTGATGTTGAATCTCATCATCTTGTGCAGCGGTCCTAGA
* *
8069740 TTGATGTTGAATCTCA-CTATCTTGTTC-GTTGGTCCTAGA
1 TTGATGTTGAATCTCATC-ATCTTGTGCAG-CGGTCCTAGA
8069779 TTGATGTTGAATCTCAT
1 TTGATGTTGAATCTCAT
8069796 AGCCATTACC
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.04
39 47 0.96
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.41
Consensus pattern (39 bp):
TTGATGTTGAATCTCATCATCTTGTGCAGCGGTCCTAGA
Found at i:8078511 original size:21 final size:23
Alignment explanation
Indices: 8078461--8078512 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
8078451 TAATCTATAT
*
8078461 TTCCTCTATTTTATTTGATTAATC
1 TTCCTCTATTTTATTCGATTAA-C
*
8078485 TTCCTCTATTTTCTTCGATT-A-
1 TTCCTCTATTTTATTCGATTAAC
8078506 TTCCTCT
1 TTCCTCT
8078513 TCTCTTGTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 7 0.27
23 1 0.04
24 18 0.69
ACGTcount: A:0.15, C:0.23, G:0.04, T:0.58
Consensus pattern (23 bp):
TTCCTCTATTTTATTCGATTAAC
Found at i:8084776 original size:47 final size:41
Alignment explanation
Indices: 8084683--8084764 Score: 110
Period size: 41 Copynumber: 1.9 Consensus size: 41
8084673 GGGTATATAT
* *
8084683 ATTTAAATTAAATATATATATTATATATATTTTTTAATTTA
1 ATTTAAATTAAATATATATATTATATATATTATATAATTTA
*
8084724 ATTTAAATTAAATTTATTAATATTATATATATATATATAAT
1 ATTTAAATTAAATATA-T-ATATTATATATAT-TATATAAT
8084765 AATTATTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
41 15 0.43
42 1 0.03
43 13 0.37
44 6 0.17
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (41 bp):
ATTTAAATTAAATATATATATTATATATATTATATAATTTA
Found at i:8084891 original size:42 final size:42
Alignment explanation
Indices: 8084807--8084891 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
8084797 ACTAAACCCG
* *
8084807 TCCCCGTCCCCGTTTAACATAAACGATTTTTCCCCGTCCCCA
1 TCCCCATCCCCGTTTAACATAAACGATTTTTCCCCATCCCCA
** * *
8084849 TCCCCATCCCCGTTTAGTATAAACGTTTTTTCCCCATTCCCA
1 TCCCCATCCCCGTTTAACATAAACGATTTTTCCCCATCCCCA
8084891 T
1 T
8084892 TTAATTCAGT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.19, C:0.40, G:0.08, T:0.33
Consensus pattern (42 bp):
TCCCCATCCCCGTTTAACATAAACGATTTTTCCCCATCCCCA
Found at i:8087710 original size:20 final size:21
Alignment explanation
Indices: 8087680--8087718 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
8087670 ATATCAGGTA
8087680 CAAATATGACAAAACCGGTCT
1 CAAATATGACAAAACCGGTCT
8087701 CAAA-ATGACAAAACCGGT
1 CAAATATGACAAAACCGGT
8087719 AAAACGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (21 bp):
CAAATATGACAAAACCGGTCT
Found at i:8087924 original size:175 final size:180
Alignment explanation
Indices: 8087342--8088225 Score: 1088
Period size: 180 Copynumber: 4.9 Consensus size: 180
8087332 TAAGTAAAAT
*
8087342 ATGACAAAACCGGTAA-AACGCTACCAGATATGTTGAAAGTTTCGATAATTTAATATAAGTATCG
1 ATGAC-AAACCGGTAATAA--CTACCAGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCG
* ** * *
8087406 ATACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCATCTAAAAAGTGTCGAAATTTTATGAAAAT
63 ACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACATTTTATAAAAAT
*
8087471 GTATCGATCCATAACAATATAACAGCTAAAAATATGAC-AAATCGGTCTCAAA
128 GTATCGATCTATAACAATATAACAGCTAAAAATATGACAAAATCGGTCTCAAA
** * *
8087523 ATGACAAAAAGGTAAATAACTACCAGATATGTTGAAAGTGTCGATACTTTAATATAATTATCGAC
1 ATGACAAACCGGT-AATAACTACCAGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGAC
* * * *
8087588 ACTTT-TGGAATTTAAAAGAGAAAAAGTTATAGCGCCTATAAAGTGTCGATATTTTAAAAAAATT
65 ACTTTCT-GAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACATTTTATAAAAA-T
* * * * *
8087652 TTATCGATCTATAACAATATATCAGGTACAAATATGACAAAACCGGTCTCAAA
128 GTATCGATCTATAACAATATAACAGCTAAAAATATGACAAAATCGGTCTCAAA
* *
8087705 ATGACAAAACCGGTAA-AACGATATCGGATATGTTGAAAGTGTCGATAATTT-A-ATAAGTATCG
1 ATGAC-AAACCGGTAATAAC--TACCAGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCG
* *
8087767 ACACTTTCTGAA-TT-AAA-AGAAGAAGTTATAGCGCCTAAAAAGTATCGACACTTTATAAAAAT
63 ACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACATTTTATAAAAAT
* * * *
8087829 GTATCGATCGATAA-AATATAACAGCTAAAAATATGAGAAAATAGATCTC-AA
128 GTATCGATCTATAACAATATAACAGCTAAAAATATGACAAAATCGGTCTCAAA
* * *
8087880 ATGACAAACCAGGTAAATAACTACCGGATATGTTGAACGTGTCGAT-A-CTAATATAAGTATCGA
1 ATGACAAACC-GGT-AATAACTACCAGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGA
* * *
8087943 CACTTT-TGGAATTTAAAAGAGAAGAAG-TATAGCGCCT-ATAAGTGTCGATATTTTAAAAAAAT
64 CACTTTCT-GAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACATTTTATAAAAAT
* *
8088005 GTATCGATC-ATAACAATATAACAGGT-AAAATATGACAAAACCGGTCTCAAA
128 GTATCGATCTATAACAATATAACAGCTAAAAATATGACAAAATCGGTCTCAAA
* * *
8088056 ATGACAAAACGGTAAT-ACGATACCATATATGTTGAAAGTGTCGATAATTTAAAATAAGTATCGA
1 ATGACAAACCGGTAATAAC--TACCAGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGA
* * * *
8088120 CACTTTCTGAATTTAAAAGAGAAAAAGTTATAGCGCCTAAAAAGCGTCGACACTTTATGAAAATG
64 CACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACATTTTATAAAAATG
* * *
8088185 TATCAATCTATAACAATATAAAAGCT-AAAATATGAGAAAAT
129 TATCGATCTATAACAATATAACAGCTAAAAATATGACAAAAT
8088226 AGATCAACAT
Statistics
Matches: 604, Mismatches: 71, Indels: 57
0.83 0.10 0.08
Matches are distributed among these distances:
173 3 0.00
174 11 0.02
175 100 0.17
176 84 0.14
177 67 0.11
178 57 0.09
179 31 0.05
180 131 0.22
181 63 0.10
182 24 0.04
183 33 0.05
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.27
Consensus pattern (180 bp):
ATGACAAACCGGTAATAACTACCAGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACA
CTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACATTTTATAAAAATGTA
TCGATCTATAACAATATAACAGCTAAAAATATGACAAAATCGGTCTCAAA
Found at i:8088633 original size:19 final size:19
Alignment explanation
Indices: 8088501--8088653 Score: 65
Period size: 19 Copynumber: 7.7 Consensus size: 19
8088491 AATGACCAAC
**
8088501 AAATCGCAACGCGAAATAA
1 AAATCGCAACGCGATTTAA
****
8088520 AAATCGCAACGCGATCCCC
1 AAATCGCAACGCGATTTAA
** *
8088539 AAATCGCAAATC-AGTTTCCA
1 AAATCGCAACGCGA-TTT-AA
* * *
8088559 AAATCACAACGCAATTCTTGA
1 AAATCGCAACGCGA-T-TTAA
* *
8088580 AAATCGCAATGCGATAGTACA
1 AAATCGCAACGCGAT-TTA-A
* **
8088601 AATTCGCATTGCGATTTAA
1 AAATCGCAACGCGATTTAA
* *
8088620 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCG-ATTTAA
8088640 AAATCGCAACGCGA
1 AAATCGCAACGCGA
8088654 ACACATAAAT
Statistics
Matches: 99, Mismatches: 29, Indels: 12
0.71 0.21 0.09
Matches are distributed among these distances:
18 1 0.01
19 37 0.37
20 31 0.31
21 28 0.28
22 2 0.02
ACGTcount: A:0.41, C:0.24, G:0.16, T:0.19
Consensus pattern (19 bp):
AAATCGCAACGCGATTTAA
Found at i:8088761 original size:78 final size:78
Alignment explanation
Indices: 8088662--8088806 Score: 229
Period size: 78 Copynumber: 1.9 Consensus size: 78
8088652 GAACACATAA
* * * *
8088662 ATCGCAACGCGTATCCGTAAATCGCAACG-TGTATCCGTAAATCGCAACGCGTATGGGTAAATCG
1 ATCGCAACGCGTATCCGTAAATCGCAACGAT-AATCCGTAAATCGCAACGAGAATCGGTAAATCG
8088726 CAATGCGTATCCGT
65 CAATGCGTATCCGT
*
8088740 ATCGCAACGCGTATCCGTAAATCGCAACGATAATCCGTAAATCGCAACGAGAATCTGTAAATCGC
1 ATCGCAACGCGTATCCGTAAATCGCAACGATAATCCGTAAATCGCAACGAGAATCGGTAAATCGC
8088805 AA
66 AA
8088807 CGATAATCCG
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 60 0.98
79 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (78 bp):
ATCGCAACGCGTATCCGTAAATCGCAACGATAATCCGTAAATCGCAACGAGAATCGGTAAATCGC
AATGCGTATCCGT
Found at i:8088809 original size:20 final size:20
Alignment explanation
Indices: 8088620--8088845 Score: 210
Period size: 20 Copynumber: 11.5 Consensus size: 20
8088610 TGCGATTTAA
** *
8088620 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGAATCCGT
*
8088640 AAATCGCAACGCGAA-CACAT
1 AAATCGCAACGCGAATC-CGT
*
8088660 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
* *
8088680 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGAATCCGT
* **
8088700 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGAATCCGT
* *
8088720 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
*
8088740 --ATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
**
8088758 AAATCGCAACGATAATCCGT
1 AAATCGCAACGCGAATCCGT
* *
8088778 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGT
**
8088798 AAATCGCAACGATAATCCG-
1 AAATCGCAACGCGAATCCGT
* *
8088817 AAAT-GCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGT
*
8088836 AAATCACAAC
1 AAATCGCAAC
8088846 ACTGAAATTT
Statistics
Matches: 176, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
18 29 0.16
19 8 0.05
20 138 0.78
21 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGAATCCGT
Found at i:8088825 original size:78 final size:78
Alignment explanation
Indices: 8088620--8088845 Score: 228
Period size: 78 Copynumber: 2.9 Consensus size: 78
8088610 TGCGATTTAA
* * *
8088620 AAATCGCAACGCGAATATGAAAATCGCAACGCGAA-CACATAAATCGCAACGCGTATCCGTAAAT
1 AAATCGCAACGCGAATATGTAAATCGCAACG-TAATC-C-GAAATCGCAACGCGTATCCGTAAAT
*
8088684 CGCAACGTGTATCCGT
63 CGCAACGTGAATCCGT
* ** *
8088700 AAATCGCAACGCGTATGGGTAAATCGCAATGCGT-ATCCG-TATCGCAACGCGTATCCGTAAATC
1 AAATCGCAACGCGAATATGTAAATCGCAA--CGTAATCCGAAATCGCAACGCGTATCCGTAAATC
8088763 GCAACGAT-AATCCGT
64 GCAACG-TGAATCCGT
* * * * * *
8088778 AAATCGCAACGAGAATCTGTAAATCGCAACGATAATCCGAAAT-GCAACGAGAATCTGTAAATCA
1 AAATCGCAACGCGAATATGTAAATCGCAACG-TAATCCGAAATCGCAACGCGTATCCGTAAATCG
8088842 CAAC
65 CAAC
8088846 ACTGAAATTT
Statistics
Matches: 122, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
76 2 0.02
77 1 0.01
78 86 0.70
79 3 0.02
80 27 0.22
81 1 0.01
82 2 0.02
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (78 bp):
AAATCGCAACGCGAATATGTAAATCGCAACGTAATCCGAAATCGCAACGCGTATCCGTAAATCGC
AACGTGAATCCGT
Found at i:8090044 original size:22 final size:21
Alignment explanation
Indices: 8089994--8090033 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
8089984 AATAAATACG
8089994 AAATAAATTGAAGAGAAAAAT
1 AAATAAATTGAAGAGAAAAAT
8090015 AAATAAATTG-AGAGAAAAA
1 AAATAAATTGAAGAGAAAAA
8090034 ATATTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.68, C:0.00, G:0.15, T:0.17
Consensus pattern (21 bp):
AAATAAATTGAAGAGAAAAAT
Found at i:8092769 original size:3 final size:3
Alignment explanation
Indices: 8092763--8092799 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
8092753 TTTATTAACA
8092763 AAT AAT AAAT AAT AAT -AT AAT AA- AAT AAT AAT AAT AA
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8092800 ATATTATATG
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
2 4 0.13
3 24 0.77
4 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:8092790 original size:16 final size:15
Alignment explanation
Indices: 8092764--8092795 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
8092754 TTATTAACAA
8092764 ATAATAAATAATAAT
1 ATAATAAATAATAAT
8092779 ATAATAAAATAATAAT
1 ATAAT-AAATAATAAT
8092795 A
1 A
8092796 ATAAATATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAATAAATAATAAT
Found at i:8092802 original size:26 final size:27
Alignment explanation
Indices: 8092763--8092816 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
8092753 TTTATTAACA
8092763 AATAATAAATAATA-ATATAATAAAAT
1 AATAATAAATAATATATATAATAAAAT
*
8092789 AATAAT-AATAAATATTATATGATAAAAT
1 AATAATAAAT-AATA-TATATAATAAAAT
8092817 GTTTTTGTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 3 0.12
26 10 0.42
28 11 0.46
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (27 bp):
AATAATAAATAATATATATAATAAAAT
Found at i:8098065 original size:14 final size:14
Alignment explanation
Indices: 8098046--8098101 Score: 66
Period size: 14 Copynumber: 4.3 Consensus size: 14
8098036 CGTTCGTGAA
8098046 CGTTCGATTATGTT
1 CGTTCGATTATGTT
*
8098060 CGTTCGGTTATG-T
1 CGTTCGATTATGTT
*
8098073 --TT-GTTTATGTT
1 CGTTCGATTATGTT
8098084 CGTTCGATTATGTT
1 CGTTCGATTATGTT
8098098 CGTT
1 CGTT
8098102 TATGTTCATT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 6 0.17
11 3 0.09
13 3 0.09
14 23 0.66
ACGTcount: A:0.11, C:0.12, G:0.23, T:0.54
Consensus pattern (14 bp):
CGTTCGATTATGTT
Found at i:8098080 original size:24 final size:24
Alignment explanation
Indices: 8098053--8098122 Score: 97
Period size: 24 Copynumber: 2.9 Consensus size: 24
8098043 GAACGTTCGA
*
8098053 TTATGTTCGTTCGGTTATGTTTGT
1 TTATGTTCGTTCGATTATGTTTGT
*
8098077 TTATGTTCGTTCGATTATGTTCGT
1 TTATGTTCGTTCGATTATGTTTGT
*
8098101 TTATGTTCATTC-ATTTATGTTT
1 TTATGTTCGTTCGA-TTATGTTT
8098123 AATTCAATCT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 1 0.02
24 40 0.98
ACGTcount: A:0.13, C:0.10, G:0.19, T:0.59
Consensus pattern (24 bp):
TTATGTTCGTTCGATTATGTTTGT
Found at i:8098865 original size:10 final size:10
Alignment explanation
Indices: 8098850--8098924 Score: 61
Period size: 10 Copynumber: 7.7 Consensus size: 10
8098840 GGGTCTCCAA
8098850 CGTTTATGTT
1 CGTTTATGTT
8098860 CGTTTATGTT
1 CGTTTATGTT
8098870 CGTGTTCAT-TT
1 CGT-TT-ATGTT
* **
8098881 ATGTTCGTGTT
1 -CGTTTATGTT
8098892 CGTTTATGTT
1 CGTTTATGTT
8098902 CG----TGTT
1 CGTTTATGTT
8098908 CGTTTATGTT
1 CGTTTATGTT
8098918 CGTTTAT
1 CGTTTAT
8098925 TTATTAAATG
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
6 6 0.12
10 34 0.67
11 7 0.14
12 4 0.08
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.57
Consensus pattern (10 bp):
CGTTTATGTT
Found at i:8098881 original size:16 final size:16
Alignment explanation
Indices: 8098856--8098920 Score: 121
Period size: 16 Copynumber: 4.1 Consensus size: 16
8098846 CCAACGTTTA
8098856 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
*
8098872 TGTTCATTTATGTTCG
1 TGTTCGTTTATGTTCG
8098888 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
8098904 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
8098920 T
1 T
8098921 TTATTTATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.08, C:0.12, G:0.23, T:0.57
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:8099011 original size:16 final size:16
Alignment explanation
Indices: 8098990--8099022 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8098980 AAAAAAATTT
8098990 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
8099006 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
8099022 T
1 T
8099023 CTATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:8104514 original size:54 final size:54
Alignment explanation
Indices: 8104364--8104637 Score: 171
Period size: 54 Copynumber: 5.0 Consensus size: 54
8104354 CAATTGGTTG
* * * * * *
8104364 TCAAAGCACAGAGGTGCTTGACTCTAGATTTATG-AACATAGGTGCTCAATCAATT
1 TCAAAGCACAGAGGTGCTAGACTTTAGACTGAAGCAA-AGAGGTGCTCAATC-ATT
* *
8104419 TTAAAGCACAGAGGTGCTAGACTTTAGATTGAAGCAAAGAGGTGCTCAATCATT
1 TCAAAGCACAGAGGTGCTAGACTTTAGACTGAAGCAAAGAGGTGCTCAATCATT
* * * * * *
8104473 TCAACGCATAGATGTTCTAGA-TTCTAGACTGAAGCAGAGAGGTGCTCAGTCATT
1 TCAAAGCACAGAGGTGCTAGACTT-TAGACTGAAGCAAAGAGGTGCTCAATCATT
* * * * * * * * *
8104527 TCCAACTGCACGGAGGTG-TCAG-TTTGTCGATTGAAGCACATAGGTACTTAATCATT
1 T-CAA-AGCACAGAGGTGCT-AGACTT-TAGACTGAAGCAAAGAGGTGCTCAATCATT
* * * * * * *
8104583 ACCAAGGACAGAGGTGCCA-AATTCTAGACTGAAGCACAGAGGTACTCAATCATT
1 TCAAAGCACAGAGGTGCTAGACTT-TAGACTGAAGCAAAGAGGTGCTCAATCATT
8104637 T
1 T
8104638 TTAACTACAC
Statistics
Matches: 171, Mismatches: 40, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
53 2 0.01
54 85 0.50
55 48 0.28
56 36 0.21
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (54 bp):
TCAAAGCACAGAGGTGCTAGACTTTAGACTGAAGCAAAGAGGTGCTCAATCATT
Found at i:8104676 original size:56 final size:56
Alignment explanation
Indices: 8104502--8104681 Score: 159
Period size: 56 Copynumber: 3.2 Consensus size: 56
8104492 GATTCTAGAC
* * * ** * *
8104502 TGAAGCAGAGAGGTGCTCAGTCATTTCCAACTGCACGGAGGTGTCAGTTTGTCGAT
1 TGAAGCACAGAGGTACTCAATCATTTTTAACTACACAGAGGTGTCAGTTTGTCGAT
* * * * * * ** * * *
8104558 TGAAGCACATAGGTACTTAATCA---TTACCAAGGACAGAGGTGCCAAATTCTAGAC
1 TGAAGCACAGAGGTACTCAATCATTTTTAACTA-CACAGAGGTGTCAGTTTGTCGAT
8104612 TGAAGCACAGAGGTACTCAATCATTTTTAACTACACAGAGGTGTCAGTTTGTCGAT
1 TGAAGCACAGAGGTACTCAATCATTTTTAACTACACAGAGGTGTCAGTTTGTCGAT
*
8104668 TGAAGCACATAGGT
1 TGAAGCACAGAGGT
8104682 GTTCAATCGT
Statistics
Matches: 90, Mismatches: 30, Indels: 8
0.70 0.23 0.06
Matches are distributed among these distances:
53 2 0.02
54 36 0.40
56 47 0.52
57 5 0.06
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (56 bp):
TGAAGCACAGAGGTACTCAATCATTTTTAACTACACAGAGGTGTCAGTTTGTCGAT
Found at i:8104688 original size:56 final size:56
Alignment explanation
Indices: 8104403--8104689 Score: 162
Period size: 54 Copynumber: 5.2 Consensus size: 56
8104393 TTATGAACAT
* * * *
8104403 AGGTGCTCAATCAATTTTAA--AGCACAGAGGTG-CTAGACTT-TAGATTGAAGCAAAG
1 AGGTGCTCAATCATTTTTAACTA-CACAGAGGTGTC-AG-TTTGTCGATTGAAGCACAG
* * * * * * * * *
8104458 AGGTGCTCAATCA-TTTCAAC-GCATAGATGT-TCTAGATTCTAGACTGAAGCAGAG
1 AGGTGCTCAATCATTTTTAACTACACAGAGGTGTC-AGTTTGTCGATTGAAGCACAG
* ** * * *
8104512 AGGTGCTCAGTCATTTCCAACTGCACGGAGGTGTCAGTTTGTCGATTGAAGCACAT
1 AGGTGCTCAATCATTTTTAACTACACAGAGGTGTCAGTTTGTCGATTGAAGCACAG
* * * * * * ** * * *
8104568 AGGTACTTAATCA---TTACCAAGGACAGAGGTGCCAAATTCTAGACTGAAGCACAG
1 AGGTGCTCAATCATTTTTAACTA-CACAGAGGTGTCAGTTTGTCGATTGAAGCACAG
* *
8104622 AGGTACTCAATCATTTTTAACTACACAGAGGTGTCAGTTTGTCGATTGAAGCACAT
1 AGGTGCTCAATCATTTTTAACTACACAGAGGTGTCAGTTTGTCGATTGAAGCACAG
*
8104678 AGGTGTTCAATC
1 AGGTGCTCAATC
8104690 GTTAATTCAA
Statistics
Matches: 174, Mismatches: 48, Indels: 19
0.72 0.20 0.08
Matches are distributed among these distances:
53 4 0.02
54 77 0.44
55 19 0.11
56 67 0.39
57 7 0.04
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (56 bp):
AGGTGCTCAATCATTTTTAACTACACAGAGGTGTCAGTTTGTCGATTGAAGCACAG
Found at i:8113949 original size:20 final size:20
Alignment explanation
Indices: 8113924--8113964 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
8113914 ATAAAAAAGT
8113924 ATATTTA-TAATTTTATAAAA
1 ATATTTATTAATTTT-TAAAA
8113944 ATATTTATTTAATTTTTAAAA
1 ATATTTA-TTAATTTTTAAAA
8113965 TAATATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
21 5 0.26
22 7 0.37
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
ATATTTATTAATTTTTAAAA
Found at i:8113969 original size:23 final size:23
Alignment explanation
Indices: 8113925--8113994 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
8113915 TAAAAAAGTA
*
8113925 TATTTATAATTTTATAAA-AATATT
1 TATTTA-ATTTTTA-AAATAATATT
8113949 TATTTAATTTTTAAAATAATA-T
1 TATTTAATTTTTAAAATAATATT
* *
8113971 TATTTATTTATTTTAAATAATATT
1 TATTTAATT-TTTAAAATAATATT
8113995 AATTATTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
22 12 0.30
23 21 0.52
24 7 0.17
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TATTTAATTTTTAAAATAATATT
Found at i:8113975 original size:46 final size:46
Alignment explanation
Indices: 8113925--8114025 Score: 109
Period size: 46 Copynumber: 2.2 Consensus size: 46
8113915 TAAAAAAGTA
*
8113925 TATTTA-TAATTTTATAAAAATATTTATTTAATTTT-TAAAATAATAT
1 TATTTATTAATTTTA-AAAAATA-TTAATTAATTTTGTAAAATAATAT
* * * * *
8113971 TATTTATTTATTTTAAATAATATTAATTATTTTTGTTAAATAGTAT
1 TATTTATTAATTTTAAAAAATATTAATTAATTTTGTAAAATAATAT
8114017 TATTT-TTAA
1 TATTTATTAA
8114026 ATAATATTAT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
45 13 0.28
46 26 0.57
47 7 0.15
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (46 bp):
TATTTATTAATTTTAAAAAATATTAATTAATTTTGTAAAATAATAT
Found at i:8113994 original size:20 final size:20
Alignment explanation
Indices: 8113924--8114003 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 20
8113914 ATAAAAAAGT
* *
8113924 ATATTTA-TAATTTTATAAAA
1 ATATTTATTTATTTTA-AATA
8113944 ATATTTATTTAATTTTTAAAATAA
1 ATATTTATTT-A-TTTT-AAAT-A
8113968 TATTATTTATTTATTTTAAATA
1 -A-TATTTATTTATTTTAAATA
*
8113990 ATA-TTAATTATTTT
1 ATATTTATTTATTTT
8114004 TGTTAAATAG
Statistics
Matches: 50, Mismatches: 3, Indels: 15
0.74 0.04 0.22
Matches are distributed among these distances:
19 10 0.20
20 9 0.18
21 2 0.04
22 2 0.04
23 10 0.20
24 6 0.12
25 2 0.04
26 9 0.18
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATATTTATTTATTTTAAATA
Found at i:8113995 original size:23 final size:23
Alignment explanation
Indices: 8113945--8114021 Score: 93
Period size: 23 Copynumber: 3.2 Consensus size: 23
8113935 TTTATAAAAA
8113945 TATTTATTTAATTTTTAAAATAATAT
1 TATTTATTT-A-TTTT-AAATAATAT
8113971 TATTTATTTATTTTAAATAATAT
1 TATTTATTTATTTTAAATAATAT
* *
8113994 TAATTATTT-TTGTTAAATAGTAT
1 TATTTATTTATT-TTAAATAATAT
8114017 TATTT
1 TATTT
8114022 TTAAATAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
22 2 0.04
23 31 0.66
24 4 0.09
25 1 0.02
26 9 0.19
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (23 bp):
TATTTATTTATTTTAAATAATAT
Found at i:8114002 original size:19 final size:19
Alignment explanation
Indices: 8113978--8114034 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
8113968 TATTATTTAT
8113978 TTATTTTAAATAATATTAA
1 TTATTTTAAATAATATTAA
*** *
8113997 TTATTTTTGTTAAATAGT-A
1 TTATTTTAAAT-AATATTAA
8114016 TTATTTTTAAATAATATTA
1 TTA-TTTTAAATAATATTA
8114035 TATAGAACCA
Statistics
Matches: 27, Mismatches: 8, Indels: 5
0.68 0.20 0.12
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (19 bp):
TTATTTTAAATAATATTAA
Found at i:8114135 original size:24 final size:23
Alignment explanation
Indices: 8114103--8114171 Score: 84
Period size: 24 Copynumber: 2.9 Consensus size: 23
8114093 ATTTAAAATT
*
8114103 AAATGAATAATTTAATATTATTTA
1 AAATTAATAA-TTAATATTATTTA
*
8114127 AAATTAATAATTAATATGATTTTA
1 AAATTAATAATTAATATTA-TTTA
*
8114151 AAATTAAATAAATAATATTAT
1 AAATT-AATAATTAATATTAT
8114172 AAATATATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.21
24 19 0.49
25 12 0.31
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (23 bp):
AAATTAATAATTAATATTATTTA
Found at i:8114166 original size:25 final size:23
Alignment explanation
Indices: 8114115--8114168 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 23
8114105 ATGAATAATT
* *
8114115 TAATATTATTTAAAATTAATAAT
1 TAATATGATTTAAAATTAATAAA
8114138 TAATATGATTTTAAAATTAAATAAA
1 TAATATGA-TTTAAAATT-AATAAA
8114163 TAATAT
1 TAATAT
8114169 TATAAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 7 0.26
24 9 0.33
25 11 0.41
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (23 bp):
TAATATGATTTAAAATTAATAAA
Found at i:8114217 original size:2 final size:2
Alignment explanation
Indices: 8114206--8114237 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8114196 ATGTAAATTT
8114206 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8114238 GATTTAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8121735 original size:20 final size:21
Alignment explanation
Indices: 8121712--8121755 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
8121702 TATTAATTAA
*
8121712 ATTAAAATAAT-AAATGATAT
1 ATTAAAATAATAAAATAATAT
8121732 ATT-AAATAATAAAATAATAT
1 ATTAAAATAATAAAATAATAT
8121752 ATTA
1 ATTA
8121756 TTAATAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
ATTAAAATAATAAAATAATAT
Found at i:8121761 original size:22 final size:19
Alignment explanation
Indices: 8121716--8121764 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
8121706 AATTAAATTA
*
8121716 AAATAATAAATGATATATT
1 AAATAATAAATAATATATT
8121735 AAATAATAAAATAATATATT
1 AAATAAT-AAATAATATATT
*
8121755 -ATTAATAAAT
1 AAATAATAAAT
8121765 TTTTATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 4 0.15
19 12 0.44
20 11 0.41
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
AAATAATAAATAATATATT
Found at i:8121785 original size:15 final size:16
Alignment explanation
Indices: 8121758--8121792 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
8121748 ATATATTATT
8121758 AATAAATTTTTATATA
1 AATAAATTTTTATATA
*
8121774 AATAAA-TTTTATTTA
1 AATAAATTTTTATATA
8121789 AATA
1 AATA
8121793 TTTAGAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AATAAATTTTTATATA
Found at i:8124033 original size:18 final size:18
Alignment explanation
Indices: 8124007--8124042 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8123997 ATGTGTGGGC
*
8124007 ATGTGTATAATATATAGT
1 ATGTATATAATATATAGT
*
8124025 ATGTATATAGTATATAGT
1 ATGTATATAATATATAGT
8124043 TGGCATATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (18 bp):
ATGTATATAATATATAGT
Found at i:8124187 original size:15 final size:15
Alignment explanation
Indices: 8124150--8124188 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
8124140 GAATAGTTGC
*
8124150 ATTGCATATCATATA
1 ATTGCATATCAAATA
* *
8124165 GTTTCATATCAAATA
1 ATTGCATATCAAATA
8124180 ATTGCATAT
1 ATTGCATAT
8124189 TATATTTGAT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.41
Consensus pattern (15 bp):
ATTGCATATCAAATA
Found at i:8124206 original size:27 final size:29
Alignment explanation
Indices: 8124150--8124209 Score: 79
Period size: 27 Copynumber: 2.1 Consensus size: 29
8124140 GAATAGTTGC
8124150 ATTGCATATCATATAGTTTCATATCAAATA
1 ATTGCATAT-ATATAGTTTCATATCAAATA
* *
8124180 ATTGCATAT-TATA-TTTGATATTAAATA
1 ATTGCATATATATAGTTTCATATCAAATA
8124207 ATT
1 ATT
8124210 AATAAATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 15 0.54
28 4 0.14
30 9 0.32
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (29 bp):
ATTGCATATATATAGTTTCATATCAAATA
Found at i:8124247 original size:18 final size:18
Alignment explanation
Indices: 8124221--8124257 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
8124211 ATAAATTACA
*
8124221 TAGTTTATATTATATAGT
1 TAGTATATATTATATAGT
8124239 TAGTATATATTATATAGT
1 TAGTATATATTATATAGT
8124257 T
1 T
8124258 TGCATGTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (18 bp):
TAGTATATATTATATAGT
Found at i:8125106 original size:15 final size:15
Alignment explanation
Indices: 8125091--8125125 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8125081 TACTTTGAAT
8125091 TTATATAA-TATAAA
1 TTATATAAGTATAAA
8125105 TTATATAAGTATAAA
1 TTATATAAGTATAAA
*
8125120 CTATAT
1 TTATAT
8125126 TATATAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (15 bp):
TTATATAAGTATAAA
Found at i:8125124 original size:27 final size:27
Alignment explanation
Indices: 8125106--8125197 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
8125096 TAATATAAAT
* *
8125106 TATATAAGTATAAACTATATTATATAG
1 TATATAAATATCAACTATATTATATAG
*
8125133 TATATAAATATCAACTATAGTATATAG
1 TATATAAATATCAACTATATTATATAG
8125160 TATATAAATATCAACTATATTATATAG
1 TATATAAATATCAACTATATTATATAG
* *
8125187 TTTATATATAT
1 TATATAAATAT
8125198 ATTGTTTTTA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (27 bp):
TATATAAATATCAACTATATTATATAG
Found at i:8125280 original size:29 final size:28
Alignment explanation
Indices: 8125249--8125316 Score: 84
Period size: 27 Copynumber: 2.4 Consensus size: 28
8125239 TAATACATAA
*
8125249 TATATAAATATCAACTATAG-TATATAG
1 TATATAAATATAAACTATAGTTATATAG
*
8125276 TATATAAATTTAAACTATAGTTTATATAG
1 TATATAAATATAAACTATAG-TTATATAG
* *
8125305 TTTATATATATA
1 TATATAAATATA
8125317 GTATATAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 18 0.53
29 16 0.47
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (28 bp):
TATATAAATATAAACTATAGTTATATAG
Found at i:8125296 original size:20 final size:20
Alignment explanation
Indices: 8125271--8125341 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
8125261 AACTATAGTA
8125271 TATAGTATATAAATTTAAAC
1 TATAGTATATAAATTTAAAC
* *
8125291 TATAGTTTATATAGTTTATATA-
1 TATAGTATATA-AATTTA-A-AC
* *
8125313 TATAGTATATAAATATCAAC
1 TATAGTATATAAATTTAAAC
8125333 TATAGTATA
1 TATAGTATA
8125342 CAATTTCTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
19 1 0.02
20 20 0.49
21 8 0.20
22 11 0.27
23 1 0.02
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.44
Consensus pattern (20 bp):
TATAGTATATAAATTTAAAC
Found at i:8125353 original size:42 final size:43
Alignment explanation
Indices: 8125263--8125354 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 43
8125253 TAAATATCAA
* * *
8125263 CTATAGTATATAGTATATAAATTTAAACTATAGTTTATATAGTT
1 CTATA-TATATAGTATATAAATATAAACTATAGTATACATAGTT
* *
8125307 -TATATATATAGTATATAAATATCAACTATAGTATACA-ATTT
1 CTATATATATAGTATATAAATATAAACTATAGTATACATAGTT
8125348 CTATATA
1 CTATATA
8125355 AATTATAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
41 3 0.07
42 35 0.83
43 4 0.10
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (43 bp):
CTATATATATAGTATATAAATATAAACTATAGTATACATAGTT
Found at i:8125370 original size:116 final size:118
Alignment explanation
Indices: 8125133--8125343 Score: 284
Period size: 116 Copynumber: 1.8 Consensus size: 118
8125123 TATTATATAG
*
8125133 TATATAAATATCAACTATAGTATATAGTATATAAATATCAACTATA--TTATATAGTTTATATAT
1 TATATAAATATCAACTATAGTATATAGTATATAAATATAAACTATAGTTTATATAGTTTATATAT
* * * ** ** * * *
8125196 ATATTGTTTTTATATAGTTCATATTATATATAGTTAATATACATAATACATAA
66 ATAGTATATAAATATAACTCATAGTATACATAGTTAATATAAATAATACATAA
*
8125249 TATATAAATATCAACTATAGTATATAGTATATAAATTTAAACTATAGTTTATATAGTTTATATAT
1 TATATAAATATCAACTATAGTATATAGTATATAAATATAAACTATAGTTTATATAGTTTATATAT
8125314 ATAGTATATAAATATCAACT-ATAGTATACA
66 ATAGTATATAAATAT-AACTCATAGTATACA
8125344 ATTTCTATAT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
116 44 0.54
118 35 0.43
119 2 0.02
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (118 bp):
TATATAAATATCAACTATAGTATATAGTATATAAATATAAACTATAGTTTATATAGTTTATATAT
ATAGTATATAAATATAACTCATAGTATACATAGTTAATATAAATAATACATAA
Found at i:8125381 original size:69 final size:70
Alignment explanation
Indices: 8125235--8125387 Score: 186
Period size: 69 Copynumber: 2.2 Consensus size: 70
8125225 ATAGTTAATA
* * * * *
8125235 TACATAATACATAATATATAAATATCAACTATAGTATATAGTATATAAATTTAAACTATAGTTTA
1 TACAT-ATATATAGTATATAAATATCAACTATAGTATACAG-ATATAAATATAAACTATAATTTA
8125300 TATAGTT
64 TATAGTT
* ** *
8125307 T--ATATATATAGTATATAAATATCAACTATAGTATACA-ATTTCTATATAAATTATAATTTATA
1 TACATATATATAGTATATAAATATCAACTATAGTATACAGATATAAATATAAACTATAATTTATA
8125369 TAGTT
66 TAGTT
8125374 TACATATATATAGT
1 TACATATATATAGT
8125388 TCATATGTAA
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
67 25 0.36
69 42 0.60
70 2 0.03
72 1 0.01
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.42
Consensus pattern (70 bp):
TACATATATATAGTATATAAATATCAACTATAGTATACAGATATAAATATAAACTATAATTTATA
TAGTT
Found at i:8125480 original size:15 final size:15
Alignment explanation
Indices: 8125460--8125493 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8125450 ATTAATTAAT
8125460 GTATTCA-ACTATATA
1 GTATTCATA-TATATA
8125475 GTATTCATATATATA
1 GTATTCATATATATA
8125490 GTAT
1 GTAT
8125494 ATACTTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.94
16 1 0.06
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (15 bp):
GTATTCATATATATA
Found at i:8125574 original size:9 final size:9
Alignment explanation
Indices: 8125562--8125709 Score: 74
Period size: 9 Copynumber: 15.7 Consensus size: 9
8125552 AAATATCAAC
8125562 TATATATAG
1 TATATATAG
*
8125571 TATATA-AA
1 TATATATAG
* *
8125579 TATAAAAAG
1 TATATATAG
8125588 TAGTTTATATA-
1 TA---TATATAG
8125599 TATATATAG
1 TATATATAG
*
8125608 TTTATATAG
1 TATATATAG
8125617 T-TCATAT-G
1 TAT-ATATAG
8125625 TAAACTATATAG
1 T--A-TATATAG
8125637 TATATATAG
1 TATATATAG
*
8125646 TTTATATAG
1 TATATATAG
8125655 T-TCATAT-G
1 TAT-ATATAG
8125663 TAAACTATATAG
1 T--A-TATATAG
8125675 TATATATAG
1 TATATATAG
*
8125684 TTTATATATG
1 TATATATA-G
*
8125694 TAGTATATAC
1 TA-TATATAG
8125704 TATATA
1 TATATA
8125710 AATAGTTTAT
Statistics
Matches: 110, Mismatches: 10, Indels: 38
0.70 0.06 0.24
Matches are distributed among these distances:
8 18 0.16
9 60 0.55
10 6 0.05
11 16 0.15
12 10 0.09
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (9 bp):
TATATATAG
Found at i:8125645 original size:38 final size:38
Alignment explanation
Indices: 8125593--8125691 Score: 191
Period size: 38 Copynumber: 2.6 Consensus size: 38
8125583 AAAAGTAGTT
8125593 TATATA-TATATATAGTTTATATAGTTCATATGTAAAC
1 TATATAGTATATATAGTTTATATAGTTCATATGTAAAC
8125630 TATATAGTATATATAGTTTATATAGTTCATATGTAAAC
1 TATATAGTATATATAGTTTATATAGTTCATATGTAAAC
8125668 TATATAGTATATATAGTTTATATA
1 TATATAGTATATATAGTTTATATA
8125692 TGTAGTATAT
Statistics
Matches: 61, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 6 0.10
38 55 0.90
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.46
Consensus pattern (38 bp):
TATATAGTATATATAGTTTATATAGTTCATATGTAAAC
Found at i:8125681 original size:20 final size:20
Alignment explanation
Indices: 8125610--8125675 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
8125600 ATATATAGTT
8125610 TATATAGTTCATATGTAAAC
1 TATATAGTTCATATGTAAAC
* ***
8125630 TATATAG-T-ATATATAGTT
1 TATATAGTTCATATGTAAAC
8125648 TATATAGTTCATATGTAAAC
1 TATATAGTTCATATGTAAAC
8125668 TATATAGT
1 TATATAGT
8125676 ATATATAGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
18 13 0.36
19 2 0.06
20 21 0.58
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (20 bp):
TATATAGTTCATATGTAAAC
Found at i:8125700 original size:29 final size:28
Alignment explanation
Indices: 8125630--8125723 Score: 91
Period size: 29 Copynumber: 3.2 Consensus size: 28
8125620 ATATGTAAAC
*
8125630 TATATA-GTATATATAGTTTATATAGTT
1 TATATATGTATATATAGTATATATAGTT
* * **
8125657 CATATGTAAACTATATAGTATATATAGTT
1 TATATATGTA-TATATAGTATATATAGTT
*
8125686 TATATATGTAGTATATACTATATAAATAGTT
1 TATATATGTA-TATATAGTATAT--ATAGTT
8125717 TATATAT
1 TATATAT
8125724 ACTAATGAAC
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
27 4 0.08
28 1 0.02
29 34 0.65
31 13 0.25
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (28 bp):
TATATATGTATATATAGTATATATAGTT
Found at i:8125752 original size:30 final size:30
Alignment explanation
Indices: 8125718--8125798 Score: 76
Period size: 29 Copynumber: 2.7 Consensus size: 30
8125708 TAAATAGTTT
* *
8125718 ATATATACTA-ATGAACTATATAGTTTATTA
1 ATATA-ACTATATAAACTATATACTTTATTA
*
8125748 ATATAATTATATAAACTATATACTTTA-TA
1 ATATAACTATATAAACTATATACTTTATTA
* * * *
8125777 GTTTATCAATATAAACTATATA
1 ATATAACTATATAAACTATATA
8125799 TATATAAACT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 22 0.52
30 20 0.48
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (30 bp):
ATATAACTATATAAACTATATACTTTATTA
Found at i:8125779 original size:37 final size:37
Alignment explanation
Indices: 8125731--8125816 Score: 111
Period size: 37 Copynumber: 2.3 Consensus size: 37
8125721 TATACTAATG
* *
8125731 AACTATATAGTTTATTAATAT-AATTATATAAACTATA
1 AACTATATAGTTTATCAATATAAACTATATAAA-TATA
* * *
8125768 TACTTTATAGTTTATCAATATAAACTATATATATATA
1 AACTATATAGTTTATCAATATAAACTATATAAATATA
8125805 AACTATATAGTT
1 AACTATATAGTT
8125817 CATATATTCA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
37 32 0.78
38 9 0.22
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.44
Consensus pattern (37 bp):
AACTATATAGTTTATCAATATAAACTATATAAATATA
Found at i:8125805 original size:15 final size:15
Alignment explanation
Indices: 8125785--8125813 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8125775 TAGTTTATCA
8125785 ATATAAACTATATAT
1 ATATAAACTATATAT
8125800 ATATAAACTATATA
1 ATATAAACTATATA
8125814 GTTCATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (15 bp):
ATATAAACTATATAT
Found at i:8125875 original size:268 final size:268
Alignment explanation
Indices: 8125380--8125883 Score: 590
Period size: 268 Copynumber: 1.9 Consensus size: 268
8125370 AGTTTACATA
8125380 TATATAGTTCATATGTAAACTAGATAGTATATATAGTTTATATATGTAGTATATACTATATAAAT
1 TATATAGTTCATATGTAAACTAGATAGTATATATAGTTTATATATGTAGTATATACTATATAAAT
* * * * * *
8125445 AGTTTATTAATTAATGTATTCAACTATATAGTATTCATATATATAGTATATACTTTGAATTTATA
66 AGTTTATTAACTAATGAATTCAACTATATAATATTAATATATAAACTATATACTTTGAATTTATA
* *
8125510 TAGTATAAATTATATAAGCATAAACTATATTATATAGTATATAAATATCAACTATATATAGTATA
131 TAGTATAAACTATATAAGCATAAACTATATTATATAGTATATAAATATCAACTATATATAGTACA
* ** *
8125575 TAAATATAAAAAGTAGTTTATATATATATATAGTTTATATAGTTCATATGTAAACTATATAGTAT
196 TAAATATAAAAACTAGTAAATATAAATATATAGTTTATATAGTTCATATGTAAACTATATAGTAT
8125640 ATATAGTT
261 ATATAGTT
*
8125648 TATATAGTTCATATGTAAACTATATAGTATATATAGTTTATATATGTAGTATATACTATATAAAT
1 TATATAGTTCATATGTAAACTAGATAGTATATATAGTTTATATATGTAGTATATACTATATAAAT
* *
8125713 AGTTTATATATACTAATGAACTAT-ATAGTTTATTAATA-TAATTATATAAACTATATACTTT-A
66 AGTTTAT-TA-ACTAATGAA-T-TCA-ACTATA-TAATATTAA-TATATAAACTATATACTTTGA
* * *
8125775 TAGTTTATCA-A-TATAAACTATATATA-TATAAACTATA-TAGT-TCA-TATATTCACTA-CAT
124 -A-TTTAT-ATAGTATAAACTATATA-AGCATAAACTATATTA-TAT-AGTATA-TAAATATCA-
8125833 ACT-T-TATA-TACAT-AATAT-AAAACTA-TAAATATAAACTATATAGTTTATATA
181 ACTATATATAGTACATAAATATAAAAACTAGTAAATATAAA-TATATAGTTTATATA
8125884 TATTATATTA
Statistics
Matches: 202, Mismatches: 18, Indels: 32
0.80 0.07 0.13
Matches are distributed among these distances:
267 7 0.03
268 92 0.46
269 7 0.03
270 11 0.05
271 6 0.03
272 18 0.09
273 53 0.26
274 7 0.03
275 1 0.00
ACGTcount: A:0.44, C:0.06, G:0.07, T:0.43
Consensus pattern (268 bp):
TATATAGTTCATATGTAAACTAGATAGTATATATAGTTTATATATGTAGTATATACTATATAAAT
AGTTTATTAACTAATGAATTCAACTATATAATATTAATATATAAACTATATACTTTGAATTTATA
TAGTATAAACTATATAAGCATAAACTATATTATATAGTATATAAATATCAACTATATATAGTACA
TAAATATAAAAACTAGTAAATATAAATATATAGTTTATATAGTTCATATGTAAACTATATAGTAT
ATATAGTT
Found at i:8125898 original size:26 final size:25
Alignment explanation
Indices: 8125869--8125924 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 25
8125859 AAATATAAAC
*
8125869 TATATAGTTTATATATATTATATTAA
1 TATATACTTTATATATA-TATATTAA
8125895 TATATACTTTATATATATATATTAA
1 TATATACTTTATATATATATATTAA
8125920 TATAT
1 TATAT
8125925 TATAATTGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 13 0.45
26 16 0.55
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (25 bp):
TATATACTTTATATATATATATTAA
Found at i:8125899 original size:15 final size:15
Alignment explanation
Indices: 8125878--8125928 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
8125868 CTATATAGTT
8125878 TATATATATTATAT-
1 TATATATATTATATA
8125892 TAATATATACTT-TATA
1 T-ATATATA-TTATATA
8125908 TATATATATTA-ATA
1 TATATATATTATATA
8125922 TAT-TATA
1 TATATATA
8125929 ATTGTTTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
13 4 0.12
14 9 0.27
15 17 0.52
16 3 0.09
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (15 bp):
TATATATATTATATA
Found at i:8125900 original size:17 final size:18
Alignment explanation
Indices: 8125878--8125926 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 18
8125868 CTATATAGTT
8125878 TATATA-TATTATATTAA
1 TATATACTATTATATTAA
8125895 TATATACT-TTATA-T-A
1 TATATACTATTATATTAA
* *
8125910 TATATATTAATATATTA
1 TATATACTATTATATTA
8125927 TAATTGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
15 8 0.31
16 5 0.19
17 12 0.46
18 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (18 bp):
TATATACTATTATATTAA
Found at i:8125928 original size:13 final size:13
Alignment explanation
Indices: 8125881--8125928 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
8125871 TATAGTTTAT
8125881 ATATATTATATTA
1 ATATATTATATTA
8125894 ATATA-TACT-TT-
1 ATATATTA-TATTA
8125905 ATATATATATATTA
1 ATATAT-TATATTA
8125919 ATATATTATA
1 ATATATTATA
8125929 ATTGTTTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
11 5 0.17
12 5 0.17
13 14 0.47
14 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATATTATATTA
Found at i:8130318 original size:22 final size:22
Alignment explanation
Indices: 8130259--8130324 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
8130249 AAAATACGAT
*
8130259 ATGAATAGTATCGTGAACATTA
1 ATGAATAGTATCGTGAACAGTA
* * *
8130281 ATGAACAATATTGTGAACAGTA
1 ATGAATAGTATCGTGAACAGTA
*
8130303 ATGAATAGTACCGTGAACAGTA
1 ATGAATAGTATCGTGAACAGTA
8130325 CCCAAATGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.27
Consensus pattern (22 bp):
ATGAATAGTATCGTGAACAGTA
Found at i:8133105 original size:15 final size:15
Alignment explanation
Indices: 8133085--8133114 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8133075 ATTATTTGTT
8133085 TTTCATATTCTTTAA
1 TTTCATATTCTTTAA
*
8133100 TTTCATTTTCTTTAA
1 TTTCATATTCTTTAA
8133115 ATCTTTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTCATATTCTTTAA
Found at i:8138673 original size:7 final size:7
Alignment explanation
Indices: 8138663--8138733 Score: 142
Period size: 7 Copynumber: 10.1 Consensus size: 7
8138653 ATGTTTTATG
8138663 TTAATTT
1 TTAATTT
8138670 TTAATTT
1 TTAATTT
8138677 TTAATTT
1 TTAATTT
8138684 TTAATTT
1 TTAATTT
8138691 TTAATTT
1 TTAATTT
8138698 TTAATTT
1 TTAATTT
8138705 TTAATTT
1 TTAATTT
8138712 TTAATTT
1 TTAATTT
8138719 TTAATTT
1 TTAATTT
8138726 TTAATTT
1 TTAATTT
8138733 T
1 T
8138734 GTAAGTACCT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 64 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTAATTT
Found at i:8141798 original size:33 final size:33
Alignment explanation
Indices: 8141750--8141817 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
8141740 TACACTGTTC
* *
8141750 AAACAACGCAGTTTGGTTCGAACAGTGCAGAAA
1 AAACAACGCAATTTGGTTCGAACAGTACAGAAA
* *
8141783 AAACAATGCAATTTGGTTCGAATAGTACAGAAA
1 AAACAACGCAATTTGGTTCGAACAGTACAGAAA
8141816 AA
1 AA
8141818 TTAGTTTAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.21
Consensus pattern (33 bp):
AAACAACGCAATTTGGTTCGAACAGTACAGAAA
Found at i:8142888 original size:15 final size:15
Alignment explanation
Indices: 8142868--8142908 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
8142858 AGTTCTTTCT
8142868 TTTTCTTTATTTACG
1 TTTTCTTTATTTACG
8142883 TTTTCTTTATTTACG
1 TTTTCTTTATTTACG
*
8142898 CTTTCTTTATT
1 TTTTCTTTATT
8142909 GTTCTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.12, C:0.15, G:0.05, T:0.68
Consensus pattern (15 bp):
TTTTCTTTATTTACG
Found at i:8144986 original size:34 final size:34
Alignment explanation
Indices: 8144943--8145010 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
8144933 AATAATTTTT
8144943 TCTCTCTTCCACTAGTTTTCAGGTGATAGTAGAA
1 TCTCTCTTCCACTAGTTTTCAGGTGATAGTAGAA
8144977 TCTCTCTTCCACTAGTTTTCAGGTGATAGTAGAA
1 TCTCTCTTCCACTAGTTTTCAGGTGATAGTAGAA
8145011 GGCAAGAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.38
Consensus pattern (34 bp):
TCTCTCTTCCACTAGTTTTCAGGTGATAGTAGAA
Found at i:8150820 original size:55 final size:55
Alignment explanation
Indices: 8150712--8151233 Score: 662
Period size: 55 Copynumber: 9.7 Consensus size: 55
8150702 CTATACAAGA
8150712 ATTCATCAACTCATGATGAATT-CG-GGCA--T-CACACATA-GTGCCTGTACGGTG
1 ATTCATCAACTCATGATGAATTCCGTGG-ATTTGCACACA-AGGTGCCTGTACGGTG
* *
8150763 ATTCATCAACTCATGATGAATTCTGTGAATTTGCACACGAA-GTGCCTGTACGGTG
1 ATTCATCAACTCATGATGAATTCCGTGGATTTGCACAC-AAGGTGCCTGTACGGTG
* * *
8150818 ATTCATCAACTCATGATGAATTTCGTGGATTTGCACACAAGGTACCTTTACGGTG
1 ATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAGGTGCCTGTACGGTG
* * * *
8150873 ATTTATCAACTCATGATGAATTCCGTGAATATGCATACGAA-GTGCCTGTACGGTG
1 ATTCATCAACTCATGATGAATTCCGTGGATTTGCACAC-AAGGTGCCTGTACGGTG
* * *
8150928 ATTCATCAACTCATGATGAATTCCGTGGATTTGAAAACAAGGTGCCTGTATC-ATG
1 ATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAGGTGCCTGTA-CGGTG
* * * *
8150983 ATTCATCAACTCATGATGAATTCCGAGGATTTGCACACAAGGTTCCTTTATGGTG
1 ATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAGGTGCCTGTACGGTG
*
8151038 ATTCATCAACTCATGATGAATTCTGTGGATTTGCACACAAGGTGCC--T---GT-
1 ATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAGGTGCCTGTACGGTG
** *
8151087 ATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAGGTGTATATACGGTG
1 ATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAGGTGCCTGTACGGTG
* * *
8151142 ATTCATCAACTCATGATGAATTCCGTGAATATGCACATAAGGTG-CTGTACGGTG
1 ATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAGGTGCCTGTACGGTG
* *
8151196 ATTCATCAACTCATGATGAATTCCGTGAATATGCACAC
1 ATTCATCAACTCATGATGAATTCCGTGGATTTGCACAC
8151234 GAAGTACCTG
Statistics
Matches: 415, Mismatches: 39, Indels: 31
0.86 0.08 0.06
Matches are distributed among these distances:
49 43 0.10
50 2 0.00
51 23 0.06
52 2 0.00
53 2 0.00
54 52 0.13
55 287 0.69
56 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (55 bp):
ATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAGGTGCCTGTACGGTG
Found at i:8151169 original size:27 final size:27
Alignment explanation
Indices: 8151087--8151169 Score: 64
Period size: 27 Copynumber: 3.0 Consensus size: 27
8151077 AGGTGCCTGT
8151087 ATTCATCAACTCATGATGAATTCCGTGG
1 ATTCATCAACTCATGATGAATTCCGT-G
* * * * *
8151115 ATT--TGC-ACACAAGGTGTATATACGGTG
1 ATTCAT-CAACTCATGATG-A-ATTCCGTG
8151142 ATTCATCAACTCATGATGAATTCCGTG
1 ATTCATCAACTCATGATGAATTCCGTG
8151169 A
1 A
8151170 ATATGCACAT
Statistics
Matches: 39, Mismatches: 10, Indels: 13
0.63 0.16 0.21
Matches are distributed among these distances:
26 8 0.21
27 13 0.33
28 10 0.26
29 8 0.21
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31
Consensus pattern (27 bp):
ATTCATCAACTCATGATGAATTCCGTG
Found at i:8158039 original size:55 final size:55
Alignment explanation
Indices: 8157913--8158440 Score: 638
Period size: 55 Copynumber: 9.7 Consensus size: 55
8157903 TGCACAATTA
* * ** ** *
8157913 GTGCCTATACGG-GAATTCATCAACTCAAGATGAATTATGTGG-GCTACACACATA-
1 GTGCCTGTACGGTG-ATTCATCAACTCATGATGAATTCCGTGGATTTGCACACA-AG
* * * *
8157967 GTGCCTGTACGGTGATTCATAAACTCATGATGAATTCCATGAATATGCACACGAA-
1 GTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGCACAC-AAG
* * *
8158022 GTTCCTGTACGGTGATTCATCAACTTATGATGAATTCTGTGGATTTGCACACAAG
1 GTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAG
* * * * * *
8158077 GTGTCTGTACGGTGATTCCT-AATTCATGATGAATTTCGTGAATATGCACACGAA-
1 GTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGCACAC-AAG
* *
8158131 GTGCCTGTACTGTGATTCATCAACTCATGATGAATTCCGTGGATTTGTACACAAG
1 GTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAG
*
8158186 GTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTTCACACAAG
1 GTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAG
* * * * *
8158241 ATACATGTATGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGTACACAAG
1 GTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAG
*
8158296 GTGCCTGTACAGTGATTCATCAACTCATGATGAATTCC-TGGATTTGCACACAAG
1 GTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAG
* * * * *
8158350 GTGCTTGTATGGTGATTCATCAACTCATGATGAATTCTGTGAATATGCACACAAG
1 GTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAG
***
8158405 GTGCCTGTATATTGATTCATCAACTCATGATGAATT
1 GTGCCTGTACGGTGATTCATCAACTCATGATGAATT
8158441 TCATGAATAT
Statistics
Matches: 408, Mismatches: 58, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
54 128 0.31
55 279 0.68
56 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (55 bp):
GTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAG
Found at i:8158104 original size:109 final size:109
Alignment explanation
Indices: 8157912--8158453 Score: 662
Period size: 109 Copynumber: 5.0 Consensus size: 109
8157902 ATGCACAATT
* * * ** *
8157912 AGTGCCTATACGG-GAATTCATCAACTCAAGATGAATTATGTGG-GCTACACACATA-GTGCCTG
1 AGTGCCTGTACGGTG-ATTCATCAACTCATGATGAATTCTGTGGATTTGCACACA-AGGTGCCTG
*
8157974 TACGGTGATTCATAAACTCATGATGAATTCCATGAATATGCACACGA
64 TACGGTGATTCATCAACTCATGATGAATTCCATGAATATGCACAC-A
* * *
8158021 AGTTCCTGTACGGTGATTCATCAACTTATGATGAATTCTGTGGATTTGCACACAAGGTGTCTGTA
1 AGTGCCTGTACGGTGATTCATCAACTCATGATGAATTCTGTGGATTTGCACACAAGGTGCCTGTA
* * * *
8158086 CGGTGATTCCT-AATTCATGATGAATTTCGTGAATATGCACACGA
66 CGGTGATTCATCAACTCATGATGAATTCCATGAATATGCACAC-A
* * *
8158130 AGTGCCTGTACTGTGATTCATCAACTCATGATGAATTCCGTGGATTTGTACACAAGGTGCCTGTA
1 AGTGCCTGTACGGTGATTCATCAACTCATGATGAATTCTGTGGATTTGCACACAAGGTGCCTGTA
* * * *
8158195 CGGTGATTCATCAACTCATGATGAATTCCGTGGATTTTCACACA
66 CGGTGATTCATCAACTCATGATGAATTCCATGAATATGCACACA
* * * * *
8158239 AGATACATGTATGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGTACACAAGGTGCCTGT
1 AG-TGCCTGTACGGTGATTCATCAACTCATGATGAATTCTGTGGATTTGCACACAAGGTGCCTGT
* * *
8158304 ACAGTGATTCATCAACTCATGATGAATTCC-TGGATTTGCACACA
65 ACGGTGATTCATCAACTCATGATGAATTCCATGAATATGCACACA
* * * *
8158348 AGGTGCTTGTATGGTGATTCATCAACTCATGATGAATTCTGTGAATATGCACACAAGGTGCCTGT
1 A-GTGCCTGTACGGTGATTCATCAACTCATGATGAATTCTGTGGATTTGCACACAAGGTGCCTGT
*** *
8158413 ATATTGATTCATCAACTCATGATGAATTTCATGAATATGCA
65 ACGGTGATTCATCAACTCATGATGAATTCCATGAATATGCA
8158454 TTGAAAGTTC
Statistics
Matches: 384, Mismatches: 42, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
109 236 0.61
110 148 0.39
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (109 bp):
AGTGCCTGTACGGTGATTCATCAACTCATGATGAATTCTGTGGATTTGCACACAAGGTGCCTGTA
CGGTGATTCATCAACTCATGATGAATTCCATGAATATGCACACA
Found at i:8158239 original size:164 final size:163
Alignment explanation
Indices: 8157959--8158453 Score: 663
Period size: 164 Copynumber: 3.0 Consensus size: 163
8157949 ATGTGGGCTA
* * * *
8157959 CACACATAGTGCCTGTACGGTGATTCATAAACTCATGATGAATTCCATGAATATGCACACGAA-G
1 CACACA-AGTGCCTGTACAGTGATTCATCAACTCATGATGAATTCC-TGGATTTGCACAC-AAGG
* * * *
8158023 TTCCTGTACGGTGATTCATCAACTTATGATGAATTCTGTGGATTTGCACACAAGGTGTCTGTACG
63 TGCCTGTACGGTGATTCATCAACTCATGATGAATTCTGTGGATTTGCACACAAGGTGACTGTATG
* *
8158088 GTGATTCCT-AATTCATGATGAATTTCGTGAATATG
128 GTGATTCATCAACTCATGATGAATTTCGTGAATATG
* *
8158123 CACACGAAGTGCCTGTACTGTGATTCATCAACTCATGATGAATTCCGTGGATTTGTACACAAGGT
1 CACAC-AAGTGCCTGTACAGTGATTCATCAACTCATGATGAATTCC-TGGATTTGCACACAAGGT
* * *
8158188 GCCTGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTTCACACAAGAT-ACATGTATG
64 GCCTGTACGGTGATTCATCAACTCATGATGAATTCTGTGGATTTGCACACAAGGTGAC-TGTATG
* * *
8158252 GTGATTCATCAACTCATGATGAATTCCGTGGATTTG
128 GTGATTCATCAACTCATGATGAATTTCGTGAATATG
*
8158288 TACACAAGGTGCCTGTACAGTGATTCATCAACTCATGATGAATTCCTGGATTTGCACACAAGGTG
1 CACACAA-GTGCCTGTACAGTGATTCATCAACTCATGATGAATTCCTGGATTTGCACACAAGGTG
* * * * * **
8158353 CTTGTATGGTGATTCATCAACTCATGATGAATTCTGTGAATATGCACACAAGGTGCCTGTATATT
65 CCTGTACGGTGATTCATCAACTCATGATGAATTCTGTGGATTTGCACACAAGGTGACTGTATGGT
*
8158418 GATTCATCAACTCATGATGAATTTCATGAATATG
130 GATTCATCAACTCATGATGAATTTCGTGAATATG
8158452 CA
1 CA
8158454 TTGAAAGTTC
Statistics
Matches: 289, Mismatches: 36, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
163 3 0.01
164 221 0.76
165 65 0.22
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (163 bp):
CACACAAGTGCCTGTACAGTGATTCATCAACTCATGATGAATTCCTGGATTTGCACACAAGGTGC
CTGTACGGTGATTCATCAACTCATGATGAATTCTGTGGATTTGCACACAAGGTGACTGTATGGTG
ATTCATCAACTCATGATGAATTTCGTGAATATG
Found at i:8158285 original size:219 final size:219
Alignment explanation
Indices: 8157959--8158453 Score: 667
Period size: 219 Copynumber: 2.3 Consensus size: 219
8157949 ATGTGGGCTA
*
8157959 CACACATA-GTGCCTGTACGGTGATTCATAAACTCATGATGAATTCCATGAATATGCACACGAAG
1 CACACA-AGGTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCATGAATATGCACACGAAG
* * * * * *
8158023 TTCCTGTACGGTGATTCATCAACTTATGATGAATTCTGTGGATTTGCACACAAGGTGTCTGTACG
65 TACATGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAGGTGCCTGTACA
* * *
8158088 GTGATTCCT-AATTCATGATGAATTTCGTGAATATGCACACGAA-GTGCCTGTACT-GTGATTCA
130 GTGATTCATCAACTCATGATGAA-TTCCTGAATATGCACAC-AAGGTGCCTGTA-TGGTGATTCA
* *
8158150 TCAACTCATGATGAATTCCGTGGATTTG
192 TCAACTCATGATGAATTCCGTGAATATG
* * * * *
8158178 TACACAAGGTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTTCACAC-AAGA
1 CACACAAGGTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCATGAATATGCACACGAAG-
* *
8158242 TACATGTATGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGTACACAAGGTGCCTGTACA
65 TACATGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAGGTGCCTGTACA
* * *
8158307 GTGATTCATCAACTCATGATGAATTCCTGGATTTGCACACAAGGTGCTTGTATGGTGATTCATCA
130 GTGATTCATCAACTCATGATGAATTCCTGAATATGCACACAAGGTGCCTGTATGGTGATTCATCA
*
8158372 ACTCATGATGAATTCTGTGAATATG
195 ACTCATGATGAATTCCGTGAATATG
*** *
8158397 CACACAAGGTGCCTGTATATTGATTCATCAACTCATGATGAATTTCATGAATATGCA
1 CACACAAGGTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCATGAATATGCA
8158454 TTGAAAGTTC
Statistics
Matches: 239, Mismatches: 32, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
218 7 0.03
219 220 0.92
220 12 0.05
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (219 bp):
CACACAAGGTGCCTGTACGGTGATTCATCAACTCATGATGAATTCCATGAATATGCACACGAAGT
ACATGTACGGTGATTCATCAACTCATGATGAATTCCGTGGATTTGCACACAAGGTGCCTGTACAG
TGATTCATCAACTCATGATGAATTCCTGAATATGCACACAAGGTGCCTGTATGGTGATTCATCAA
CTCATGATGAATTCCGTGAATATG
Found at i:8159006 original size:21 final size:21
Alignment explanation
Indices: 8158980--8159033 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
8158970 CGATGTTGCT
8158980 TGGTATCGATACCCCTTATCA
1 TGGTATCGATACCCCTTATCA
8159001 TGGTATCGATACCCCTTATCA
1 TGGTATCGATACCCCTTATCA
8159022 TGGTATCGATAC
1 TGGTATCGATAC
8159034 TACCTCATCG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (21 bp):
TGGTATCGATACCCCTTATCA
Found at i:8159025 original size:94 final size:94
Alignment explanation
Indices: 8158847--8159026 Score: 229
Period size: 94 Copynumber: 1.9 Consensus size: 94
8158837 ACCGATACCC
* * * *
8158847 CCTTCCGGTATCGATACCAAAATTAAGTTCGATGTTTCCTGATTTTGATTCCCTTACCATGGTAT
1 CCTTCCGGTATCGATACCAAAATTAAGTTCGATGTTGCCTGATATCGATCCCCTTACCATGGTAT
*
8158912 CGACACTACCATATTATGGTACTATATCT
66 CGACACTACCATATCATGGTACTATATCT
* * *
8158941 CCTTCCGGTATCGATACCAAAATT-AGATTCGATGTTGCTTGGTATCGATACCCCTTATCATGGT
1 CCTTCCGGTATCGATACCAAAATTAAG-TTCGATGTTGCCTGATATCGAT-CCCCTTACCATGGT
* * *
8159005 ATCGATAC-CCCTTATCATGGTA
64 ATCGACACTACCATATCATGGTA
8159027 TCGATACTAC
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
93 2 0.03
94 52 0.71
95 19 0.26
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (94 bp):
CCTTCCGGTATCGATACCAAAATTAAGTTCGATGTTGCCTGATATCGATCCCCTTACCATGGTAT
CGACACTACCATATCATGGTACTATATCT
Found at i:8167872 original size:6 final size:7
Alignment explanation
Indices: 8167847--8167871 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8167837 ATTTTACTTG
8167847 TTTTTAA
1 TTTTTAA
8167854 TTTTTAA
1 TTTTTAA
8167861 TTTTTAA
1 TTTTTAA
8167868 TTTT
1 TTTT
8167872 ATAGGTACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTAA
Found at i:8175086 original size:20 final size:20
Alignment explanation
Indices: 8175057--8175099 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
8175047 ATTCCACCAC
*
8175057 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
8175077 ATGCATCTATATGATCCTAA
1 ATGCAACTATATGATCCTAA
8175097 ATG
1 ATG
8175100 GGCTCTTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:8177546 original size:18 final size:18
Alignment explanation
Indices: 8177523--8177569 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
8177513 GCGAATGTGA
*
8177523 ATCTTCTTGCACCTTCGG
1 ATCTTCCTGCACCTTCGG
8177541 ATCTTCCTGCACCTTCGG
1 ATCTTCCTGCACCTTCGG
8177559 ATCTTCCTGCA
1 ATCTTCCTGCA
8177570 TAATCCATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.13, C:0.36, G:0.15, T:0.36
Consensus pattern (18 bp):
ATCTTCCTGCACCTTCGG
Found at i:8180959 original size:20 final size:20
Alignment explanation
Indices: 8180936--8180978 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
8180926 ATTCCACCAC
8180936 ATGCAACTATATGATCCTAA
1 ATGCAACTATATGATCCTAA
*
8180956 ATGCATCTATATGATCCTAA
1 ATGCAACTATATGATCCTAA
8180976 ATG
1 ATG
8180979 GGCTCTTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:8183713 original size:22 final size:22
Alignment explanation
Indices: 8183683--8183725 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
8183673 GTGAAATTTA
8183683 TCCCAAAGGACCACTGTATATG
1 TCCCAAAGGACCACTGTATATG
*
8183705 TCCCGAAGGACCACTGTATAT
1 TCCCAAAGGACCACTGTATAT
8183726 CCCTCGACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (22 bp):
TCCCAAAGGACCACTGTATATG
Found at i:8190087 original size:34 final size:34
Alignment explanation
Indices: 8190021--8190089 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
8190011 TACACTATTC
* * *
8190021 AAACAATGCAGTTTGGTTTGAACAGTGCAGAAAA
1 AAACAATGCAATTTGGTTCGAACAGTACAGAAAA
* *
8190055 AAACAATGCAATTTGGTTCGAATAGTATAGAAAA
1 AAACAATGCAATTTGGTTCGAACAGTACAGAAAA
8190089 A
1 A
8190090 TCAGTTTAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.45, C:0.10, G:0.20, T:0.25
Consensus pattern (34 bp):
AAACAATGCAATTTGGTTCGAACAGTACAGAAAA
Found at i:8190176 original size:9 final size:9
Alignment explanation
Indices: 8190162--8190191 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8190152 TTCGAAAAAT
8190162 AAAAAATAG
1 AAAAAATAG
8190171 AAAAAA-AG
1 AAAAAATAG
8190179 AAAAAATAG
1 AAAAAATAG
8190188 AAAA
1 AAAA
8190192 GTTCGAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (9 bp):
AAAAAATAG
Found at i:8190182 original size:17 final size:17
Alignment explanation
Indices: 8190156--8190191 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
8190146 AAATTGTTCG
*
8190156 AAAAATAAAAAATAGAA
1 AAAAAGAAAAAATAGAA
8190173 AAAAAGAAAAAATAGAA
1 AAAAAGAAAAAATAGAA
8190190 AA
1 AA
8190192 GTTCGAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.08, T:0.08
Consensus pattern (17 bp):
AAAAAGAAAAAATAGAA
Found at i:8191786 original size:23 final size:23
Alignment explanation
Indices: 8191749--8191812 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
8191739 CAGCTCGTAT
8191749 AAATGCACCGAAGTGCCACATAG
1 AAATGCACCGAAGTGCCACATAG
* * * *
8191772 AATTTCACCGTAGTGCCGCATAG
1 AAATGCACCGAAGTGCCACATAG
8191795 AAATGCACCGAAGTGCCA
1 AAATGCACCGAAGTGCCA
8191813 TATAAAGTTG
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.34, C:0.27, G:0.22, T:0.17
Consensus pattern (23 bp):
AAATGCACCGAAGTGCCACATAG
Found at i:8191956 original size:103 final size:103
Alignment explanation
Indices: 8191821--8192045 Score: 405
Period size: 103 Copynumber: 2.2 Consensus size: 103
8191811 CATATAAAGT
*
8191821 TGTCCCTAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGT
1 TGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGT
*
8191886 CTCAACAGACCTTACACATGTTCCAAAGAATACATATA
66 CTCAACAGACCTCACACATGTTCCAAAGAATACATATA
*
8191924 TGTCCCGAAAGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGT
1 TGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGT
*
8191989 CTCAACAGACCTCACACCTGTTCCAAAGAATACATATA
66 CTCAACAGACCTCACACATGTTCCAAAGAATACATATA
*
8192027 TATCCCGAAGGACCACATA
1 TGTCCCGAAGGACCACATA
8192046 GACCCTCTAC
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 116 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (103 bp):
TGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGT
CTCAACAGACCTCACACATGTTCCAAAGAATACATATA
Found at i:8198748 original size:23 final size:23
Alignment explanation
Indices: 8198711--8198774 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 23
8198701 CAGCTTGTAT
* *
8198711 AAATGCACCGAAGTGCCACGTAG
1 AAATACACCGAAGTGCCACATAG
* * *
8198734 AATTACACCGTAGTGCCGCATAG
1 AAATACACCGAAGTGCCACATAG
*
8198757 AAATGCACCGAAGTGCCA
1 AAATACACCGAAGTGCCA
8198775 TATAAAGTTG
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.34, C:0.27, G:0.23, T:0.16
Consensus pattern (23 bp):
AAATACACCGAAGTGCCACATAG
Found at i:8198916 original size:102 final size:102
Alignment explanation
Indices: 8198791--8199006 Score: 414
Period size: 102 Copynumber: 2.1 Consensus size: 102
8198781 GTTGTCCCTA
*
8198791 AAGACAACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGTCTCAACAG
1 AAGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGTCTCAACAG
8198856 ACCTCACACCTGTTCCAAAGAATACATATATGTCCCG
66 ACCTCACACCTGTTCCAAAGAATACATATATGTCCCG
8198893 AAGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGTCTCAACAG
1 AAGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGTCTCAACAG
8198958 ACCTCACACCTGTTCCAAAGAATACATATATGTCCCG
66 ACCTCACACCTGTTCCAAAGAATACATATATGTCCCG
8198995 AAGGACCACATA
1 AA-GACCACATA
8199007 GACCCTCTAC
Statistics
Matches: 112, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
102 103 0.92
103 9 0.08
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (102 bp):
AAGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGTCTCAACAG
ACCTCACACCTGTTCCAAAGAATACATATATGTCCCG
Found at i:8200907 original size:15 final size:16
Alignment explanation
Indices: 8200883--8200927 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
8200873 TTATTGGATT
*
8200883 TTCATATTCTTTAAA-
1 TTCATTTTCTTTAAAC
8200898 TTCATTTTCTTTAAATC
1 TTCATTTTCTTTAAA-C
*
8200915 TTTATTTTCTTTA
1 TTCATTTTCTTTA
8200928 CCTCTCAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 14 0.54
17 12 0.46
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.62
Consensus pattern (16 bp):
TTCATTTTCTTTAAAC
Found at i:8202698 original size:21 final size:21
Alignment explanation
Indices: 8202674--8202713 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8202664 TTTTCAAAGG
8202674 CATGCACCGATGCATCAATAC
1 CATGCACCGATGCATCAATAC
*
8202695 CATGCATCGATGCATCAAT
1 CATGCACCGATGCATCAAT
8202714 GAATAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.23
Consensus pattern (21 bp):
CATGCACCGATGCATCAATAC
Found at i:8202763 original size:19 final size:19
Alignment explanation
Indices: 8202739--8202777 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8202729 TCGAATGCAT
8202739 TCCATGCACCGATGCACTC
1 TCCATGCACCGATGCACTC
*
8202758 TCCATGCATCGATGCACTC
1 TCCATGCACCGATGCACTC
8202777 T
1 T
8202778 GATTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.38, G:0.15, T:0.26
Consensus pattern (19 bp):
TCCATGCACCGATGCACTC
Found at i:8202802 original size:64 final size:65
Alignment explanation
Indices: 8202674--8202838 Score: 176
Period size: 64 Copynumber: 2.5 Consensus size: 65
8202664 TTTTCAAAGG
*
8202674 CATGCACCGATGCA-TCAATACCATGCATCGATGCA-TCAATGAATAAATTGAAACATCGAATGC
1 CATGCACCGATGCACTC--T-CCATGCATCGATGCACTC-ATGAATAAATTAAAACATCGAATGC
8202737 ATTC
62 ATTC
* * *
8202741 CATGCACCGATGCACTCTCCATGCATCGATGCACTC-TGATTTAATTAAAACATCGAATGCATTT
1 CATGCACCGATGCACTCTCCATGCATCGATGCACTCATGAATAAATTAAAACATCGAATGCATTC
* * * **
8202805 GATACATC-AGTGCACAATCCATGCATCGATGCAC
1 CATGCACCGA-TGCACTCTCCATGCATCGATGCAC
8202839 CAGGCTATTT
Statistics
Matches: 86, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
63 1 0.01
64 51 0.59
65 15 0.17
66 3 0.03
67 14 0.16
68 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (65 bp):
CATGCACCGATGCACTCTCCATGCATCGATGCACTCATGAATAAATTAAAACATCGAATGCATTC
Found at i:8202883 original size:17 final size:19
Alignment explanation
Indices: 8202861--8202903 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
8202851 CAAACATCAA
*
8202861 ATGCACT-TCA-TGCATCG
1 ATGCACTCTCAGTGCACCG
*
8202878 ATGCACTCTTAGTGCACCG
1 ATGCACTCTCAGTGCACCG
8202897 ATGCACT
1 ATGCACT
8202904 AGGAGTCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 2 0.09
19 13 0.59
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (19 bp):
ATGCACTCTCAGTGCACCG
Found at i:8202883 original size:64 final size:62
Alignment explanation
Indices: 8202674--8202883 Score: 165
Period size: 64 Copynumber: 3.2 Consensus size: 62
8202664 TTTTCAAAGG
* ** ** *
8202674 CATGCACCGATGCATCAATACCATGCATCGATGCATCAATGAATAAATTGAAACATCGAATGCAT
1 CATGCATCGATGCA-CAAT-CCATGCATCGATGCA-CGCTG-ATTTATTAAAACATCGAATGCAT
8202739 T
62 T
* ** *
8202740 CCATGCACCGATGCACTCTCCATGCATCGATGCACTCTGATTTAATTAAAACATCGAATGCATTT
1 -CATGCATCGATGCACAATCCATGCATCGATGCACGCTGATTT-ATTAAAACATCGAATGCA-TT
* * * *
8202805 GATACATC-AGTGCACAATCCATGCATCGATGCACCAGGCT-ATTT-TTCAAACATCAAATGCAC
1 CATGCATCGA-TGCACAATCCATGCATCGATGCA-C--GCTGATTTATTAAAACATCGAATGCA-
8202867 TT
61 TT
8202869 CATGCATCGATGCAC
1 CATGCATCGATGCAC
8202884 TCTTAGTGCA
Statistics
Matches: 118, Mismatches: 18, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
63 3 0.03
64 74 0.63
65 19 0.16
66 6 0.05
67 16 0.14
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (62 bp):
CATGCATCGATGCACAATCCATGCATCGATGCACGCTGATTTATTAAAACATCGAATGCATT
Found at i:8210045 original size:21 final size:21
Alignment explanation
Indices: 8210021--8210060 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8210011 TTTTCAAAGG
8210021 CATGCACCGATGCATCAATAC
1 CATGCACCGATGCATCAATAC
*
8210042 CATGCATCGATGCATCAAT
1 CATGCACCGATGCATCAAT
8210061 GAATAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.23
Consensus pattern (21 bp):
CATGCACCGATGCATCAATAC
Found at i:8210110 original size:19 final size:19
Alignment explanation
Indices: 8210086--8210124 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
8210076 TCGAATGCAT
8210086 TCCATGCACCGATGCACTC
1 TCCATGCACCGATGCACTC
**
8210105 TCCATGCATTGATGCACTC
1 TCCATGCACCGATGCACTC
8210124 T
1 T
8210125 GATTTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.36, G:0.15, T:0.28
Consensus pattern (19 bp):
TCCATGCACCGATGCACTC
Found at i:8210148 original size:64 final size:64
Alignment explanation
Indices: 8210021--8210250 Score: 204
Period size: 64 Copynumber: 3.5 Consensus size: 64
8210011 TTTTCAAAGG
* * *
8210021 CATGCACCGATGCA-TCAATACCATGCATCGATGCA-TCAATGAATAAATTGAAACATCGAATGC
1 CATGCACCGATGCACTC--T-CCATGCATCGATGCACTC-ATGATTTAATTAAAACATCGAATGC
8210084 ATT
62 ATT
*
8210087 CCATGCACCGATGCACTCTCCATGCATTGATGCACTC-TGATTTAATTAAAACATCGAATGCATT
1 -CATGCACCGATGCACTCTCCATGCATCGATGCACTCATGATTTAATTAAAACATCGAATGCA-T
8210151 T
64 T
* * ** * *
8210152 GATGCATCGATGCACAATCCATGCATCGATGCAC-CAGGCTATTT--TTCAAACATCGAATGCAC
1 CATGCACCGATGCACTCTCCATGCATCGATGCACTCATG--ATTTAATTAAAACATCGAATGCA-
8210214 TT
63 TT
* * *
8210216 CATGCATCGATGCACTCT-TAGTGCACCGATGCACT
1 CATGCACCGATGCACTCTCCA-TGCATCGATGCACT
8210251 AGGAGTCCAA
Statistics
Matches: 138, Mismatches: 17, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
63 2 0.01
64 97 0.70
65 16 0.12
66 7 0.05
67 14 0.10
68 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (64 bp):
CATGCACCGATGCACTCTCCATGCATCGATGCACTCATGATTTAATTAAAACATCGAATGCATT
Found at i:8210230 original size:17 final size:19
Alignment explanation
Indices: 8210202--8210250 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
8210192 ATTTTTCAAA
8210202 CATCGAATGCACT-TCA-TG
1 CATCG-ATGCACTCTCAGTG
*
8210220 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTCAGTG
*
8210239 CACCGATGCACT
1 CATCGATGCACT
8210251 AGGAGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTCAGTG
Found at i:8214062 original size:3 final size:3
Alignment explanation
Indices: 8214054--8214085 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
8214044 TTTATGGTTA
*
8214054 AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8214086 AAAGTAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8215409 original size:3 final size:3
Alignment explanation
Indices: 8215401--8215453 Score: 81
Period size: 3 Copynumber: 17.7 Consensus size: 3
8215391 GTAATATATA
*
8215401 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT AAT AAA AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT
8215446 AAT AAT AA
1 AAT AAT AA
8215454 ATATAAAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 2 0.04
3 41 0.89
4 3 0.07
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:8215459 original size:9 final size:10
Alignment explanation
Indices: 8215392--8215453 Score: 80
Period size: 9 Copynumber: 6.6 Consensus size: 10
8215382 TTTGGGCCTG
8215392 TAATATATAAA
1 TAATA-ATAAA
8215403 TAATAAT-AA
1 TAATAATAAA
8215412 TAATAAT-AA
1 TAATAATAAA
8215421 TAATAATAAA
1 TAATAATAAA
8215431 TAATAATAAA
1 TAATAATAAA
8215441 -AAT-A-AAA
1 TAATAATAAA
8215448 TAATAA
1 TAATAA
8215454 ATATAAAAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
7 3 0.06
8 4 0.08
9 22 0.46
10 14 0.29
11 5 0.10
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
TAATAATAAA
Found at i:8216092 original size:124 final size:119
Alignment explanation
Indices: 8215711--8216513 Score: 807
Period size: 113 Copynumber: 6.9 Consensus size: 119
8215701 TCTCTTTCTG
* * *
8215711 TGATAGAA-TCATGCAAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAA
1 TGATAGAATTAATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
* * * * *
8215775 ATGAGTTCTTCTCATTATGATCTCTCTCTGGAAAAGTTGATC----C-ATCGAG
66 ATGAGTTCTTCTCATTATGAACTTTCTTTGGAAAAGTTGATCTGATCTATCCAA
* *
8215824 TGAT-GAATTCGA-GCAAAATGTTGAACAAGTTCTTCTCA-TATGAACTTCTTCTTCCTT-TTCA
1 TGATAGAATT-AATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
** ** * * *
8215885 GATGAGTTCTTCTCATTATGAACTCGCCCTGG-CAA--TG--CTGATCCATCAAA
65 GATGAGTTCTTCTCATTATGAACTTTCTTTGGAAAAGTTGATCTGATCTATCCAA
*
8215935 TGAT-GAATTCAA-GCGAAAA--TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTC
1 TGATAGAATT-AATGC-AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
**
8215996 AGATGAGTTCTTCTCATTATGAACTTTCTTTGGAAAAGTTGATGCTGATCTATCTCCTTCTG
64 AGATGAGTTCTTCTCATTATGAACTTTCTTTGGAAAAGTTGAT-CTGATCTA--T-C--CAA
* *
8216058 TGATAGAATT-ATGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTTAG
1 TGATAGAATTAATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
* * * * *
8216122 ATGAGTTCTTCTCATTATGAACTCTAC-CTGG-CAA--TG-T-TGATCCATCGAA
66 ATGAGTTCTTCTCATTATGAACT-TTCTTTGGAAAAGTTGATCTGATCTATCCAA
* *
8216171 TGAT-GAATTCAAGTG-AAAA-GTTGAAGAAGTTCTTCTAATTATGAACTTCTTCTTCCTTCTTC
1 TGATAGAATT-AA-TGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
**
8216233 AGATGAGTTCTTCTCATTATGAACTTTCTTTGGAAAAGTTGATGCTGATCTATCTCCTTCTG
64 AGATGAGTTCTTCTCATTATGAACTTTCTTTGGAAAAGTTGAT-CTGATCTA--T-C--CAA
* *
8216295 TGATAGAATT-ATGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAG
1 TGATAGAATTAATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
*
8216359 ATGAGTTCTTCTCATTATGAACTTTCTTTGGAAAAGTTGATC----C-ATCAAA
66 ATGAGTTCTTCTCATTATGAACTTTCTTTGGAAAAGTTGATCTGATCTATCCAA
* * * *
8216408 TGATGGATTTGA-GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTC-TCCTTCTTCAG
1 TGATAGAATTAATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
* * *
8216471 ATGAGTTCTTCACATTATGAACTTTTTTCTGGAAAAGCTGATC
66 ATGAGTTCTTCTCATTATGAACTTTCTT-TGGAAAAGTTGATC
8216514 CATCAAATGA
Statistics
Matches: 587, Mismatches: 57, Indels: 92
0.80 0.08 0.12
Matches are distributed among these distances:
106 1 0.00
108 2 0.00
110 21 0.04
111 67 0.11
112 101 0.17
113 161 0.27
114 9 0.02
115 6 0.01
116 4 0.01
117 1 0.00
118 14 0.02
119 7 0.01
120 2 0.00
121 4 0.01
122 8 0.01
123 14 0.02
124 158 0.27
125 7 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (119 bp):
TGATAGAATTAATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
ATGAGTTCTTCTCATTATGAACTTTCTTTGGAAAAGTTGATCTGATCTATCCAA
Found at i:8216258 original size:237 final size:236
Alignment explanation
Indices: 8215725--8216512 Score: 1117
Period size: 237 Copynumber: 3.4 Consensus size: 236
8215715 AGAATCATGC
*
8215725 AAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCAT
1 AAAAG-TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * **
8215790 TATGATCTCTCTCTGGAAAAGTTGAT-C----C-A--T-C--GAGTGAT-GAATTCGA-GCAAAA
65 TATGAACTTTCTTTGGAAAAGTTGATGCTGATCTATCTCCTTCTGTGATAGAATT--ATGCAAAA
* *
8215842 TGTTGAACAAGTTCTTCTCA-TATGAACTTCTTCTTCCTT-TTCAGATGAGTTCTTCTCATTATG
128 GGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
** *
8215905 AACTCGCCCTGGCAATGCTGATCCATCAAATGATGAATTCAAGCG
193 AACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAG-G
*
8215950 AAAA-TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
8216014 ATGAACTTTCTTTGGAAAAGTTGATGCTGATCTATCTCCTTCTGTGATAGAATTATGCAAAAGGT
66 ATGAACTTTCTTTGGAAAAGTTGATGCTGATCTATCTCCTTCTGTGATAGAATTATGCAAAAGGT
*
8216079 TGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTTAGATGAGTTCTTCTCATTATGAAC
131 TGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC
*
8216144 TCTACCTGGCAATGTTGATCCATCGAATGATGAATTCAAGTG
196 TCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAG-G
* *
8216186 AAAAGTTGAAGAAGTTCTTCTAATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
8216251 ATGAACTTTCTTTGGAAAAGTTGATGCTGATCTATCTCCTTCTGTGATAGAATTATGCAAAAGGT
66 ATGAACTTTCTTTGGAAAAGTTGATGCTGATCTATCTCCTTCTGTGATAGAATTATGCAAAAGGT
*
8216316 TGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAAC
131 TGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC
* * * * * ** *
8216381 T-TTCTTTGGAAAAGTTGATCCATCAAATGATGGATTTGAGC
196 TCTAC-CTGGCAATGTTGATCCATCAAATGATGAATTCAAGG
* *
8216422 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTC-TCCTTCTTCAGATGAGTTCTTCACAT
1 AAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
8216486 TATGAACTTTTTTCTGGAAAAGCTGAT
65 TATGAACTTTCTT-TGGAAAAGTTGAT
8216513 CCATCAAATG
Statistics
Matches: 509, Mismatches: 35, Indels: 26
0.89 0.06 0.05
Matches are distributed among these distances:
223 80 0.16
224 1 0.00
225 4 0.01
228 1 0.00
229 1 0.00
231 1 0.00
232 1 0.00
233 1 0.00
234 29 0.06
235 24 0.05
236 110 0.22
237 256 0.50
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (236 bp):
AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTCTTTGGAAAAGTTGATGCTGATCTATCTCCTTCTGTGATAGAATTATGCAAAAGGT
TGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC
TCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAGG
Found at i:8216955 original size:22 final size:23
Alignment explanation
Indices: 8216930--8216984 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
8216920 GATAAAGCTT
*
8216930 TCATCTTTGAAAAA-AGAATCTG
1 TCATCTTTGAAAAAGAGAATCTA
*
8216952 TCATCTTT-AAAAAGGGAATCTA
1 TCATCTTTGAAAAAGAGAATCTA
*
8216974 TCAACTTTGAA
1 TCATCTTTGAA
8216985 GAGTGTAGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.18
22 21 0.75
23 2 0.07
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.33
Consensus pattern (23 bp):
TCATCTTTGAAAAAGAGAATCTA
Found at i:8217442 original size:40 final size:40
Alignment explanation
Indices: 8217387--8217466 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
8217377 TTTCAGCTTA
*
8217387 GATGTAAAACACTTGACAACACATTCATCCTTTTGTGTGG
1 GATGTAAAACACTTGACAACACATTCATCCTTTTCTGTGG
8217427 GATGTAAAACACTTGACAACACATTCATCCTTTTCTGTGG
1 GATGTAAAACACTTGACAACACATTCATCCTTTTCTGTGG
8217467 CTTCTGCTCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (40 bp):
GATGTAAAACACTTGACAACACATTCATCCTTTTCTGTGG
Found at i:8219336 original size:115 final size:115
Alignment explanation
Indices: 8219159--8219499 Score: 551
Period size: 115 Copynumber: 3.0 Consensus size: 115
8219149 GATCATGCAG
* * * * *
8219159 TTCATCTTTTAATTCCAATGATTGG-TTTTGTGGTTC-TACCGAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCTAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
8219222 AACACTTCCAGAAGATGCTATTGGGCCTCCTTATTTCTACCATGAGCAAA
66 AACACTTCCAGAAGATGCTATTGGGCCTCCTTATTTCTACCATGAGCAAA
*
8219272 TTCATCTTTCAAATTTAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCTAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
8219337 AACACTTCCAGAAGATGCTATTGGGCCTCCTTATTTCTACCATGAGCAAA
66 AACACTTCCAGAAGATGCTATTGGGCCTCCTTATTTCTACCATGAGCAAA
* * * *
8219387 TTCATCTTTTAAATCTAATAATTAGTTTTTAGGGTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCTAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
* * *
8219452 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCA
66 AACACTTCCAGAAGATGCTATTGGGCCTCCTTATTTCTACCATGAGCA
8219500 CATGGCACTT
Statistics
Matches: 212, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
113 21 0.10
114 10 0.05
115 181 0.85
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (115 bp):
TTCATCTTTCAAATCTAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
AACACTTCCAGAAGATGCTATTGGGCCTCCTTATTTCTACCATGAGCAAA
Found at i:8225064 original size:14 final size:14
Alignment explanation
Indices: 8225026--8225079 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
8225016 CATAAAAATA
* *
8225026 CAAATGCAAAGATG
1 CAAATGTAAATATG
8225040 CCAAATGTAAATATG
1 -CAAATGTAAATATG
* *
8225055 CAATTGTAAAAATG
1 CAAATGTAAATATG
*
8225069 TAAATGTAAAT
1 CAAATGTAAAT
8225080 TATTTAAAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (14 bp):
CAAATGTAAATATG
Found at i:8227293 original size:27 final size:27
Alignment explanation
Indices: 8227258--8227312 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
8227248 ATTTTAAGAT
*
8227258 TATAATTATGAAA-AATATATTAATTTA
1 TATAATTAT-AAATAAAATATTAATTTA
* *
8227285 TATACTTATAAATAAAATATTTATTTA
1 TATAATTATAAATAAAATATTAATTTA
8227312 T
1 T
8227313 TTAGAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (27 bp):
TATAATTATAAATAAAATATTAATTTA
Done.