Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10629029
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 41 of 51
Found at i:8447603 original size:22 final size:22
Alignment explanation
Indices: 8447578--8447632 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
8447568 TCAGGAGTTA
* *
8447578 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTATATGATATAATTC
* *
8447600 CAGGGGTTATATGATATAATTT
1 CAGGAGTTATATGATATAATTC
8447622 CAGGAGTTATA
1 CAGGAGTTATA
8447633 AAAGTTGAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (22 bp):
CAGGAGTTATATGATATAATTC
Found at i:8453991 original size:22 final size:22
Alignment explanation
Indices: 8453966--8454048 Score: 89
Period size: 22 Copynumber: 3.8 Consensus size: 22
8453956 CCATCACATA
*
8453966 ACTAAAGTGCCTTAGCACTGGT
1 ACTAAAGTGCCTTAGCACTGAT
* * *
8453988 ACTAAAGTGCCTAAGCGCCGAT
1 ACTAAAGTGCCTTAGCACTGAT
*
8454010 A-TGGAAA-TGCATTAGCACTGAT
1 ACT--AAAGTGCCTTAGCACTGAT
8454032 ACTAAAGTGCCTTAGCA
1 ACTAAAGTGCCTTAGCA
8454049 TTTCTGAAGA
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
21 4 0.08
22 40 0.83
23 4 0.08
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (22 bp):
ACTAAAGTGCCTTAGCACTGAT
Found at i:8455149 original size:40 final size:40
Alignment explanation
Indices: 8455100--8455181 Score: 92
Period size: 40 Copynumber: 2.0 Consensus size: 40
8455090 ATAGGAGTCA
* * *
8455100 AATATTGCACAATAGTACTGAGGTCGAGCCTTGCTCACCT
1 AATAATGCACAATAGTACTGAGATCGAGCCTTGCCCACCT
** * * *
8455140 AATAATGCACCGTAGTGCTGAGATCGGGCTTTGCCCACCT
1 AATAATGCACAATAGTACTGAGATCGAGCCTTGCCCACCT
8455180 AA
1 AA
8455182 CTTGTATTAC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
AATAATGCACAATAGTACTGAGATCGAGCCTTGCCCACCT
Found at i:8455616 original size:23 final size:23
Alignment explanation
Indices: 8455586--8455635 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
8455576 AAAATATGTG
8455586 CCTTACTGTTCTCCACTCTTAAT
1 CCTTACTGTTCTCCACTCTTAAT
8455609 CCTTACTGTTCTCCACTCTTAAT
1 CCTTACTGTTCTCCACTCTTAAT
8455632 CCTT
1 CCTT
8455636 TTATATTCGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.16, C:0.36, G:0.04, T:0.44
Consensus pattern (23 bp):
CCTTACTGTTCTCCACTCTTAAT
Found at i:8463949 original size:14 final size:14
Alignment explanation
Indices: 8463930--8463956 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8463920 ATGGGCGTGA
8463930 ATGGTGATGGAAAG
1 ATGGTGATGGAAAG
8463944 ATGGTGATGGAAA
1 ATGGTGATGGAAA
8463957 TAGTATCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.41, T:0.22
Consensus pattern (14 bp):
ATGGTGATGGAAAG
Found at i:8464332 original size:19 final size:20
Alignment explanation
Indices: 8464294--8464336 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
8464284 GAAACCCCTT
*
8464294 TGAAAACACATGATTTTTAA
1 TGAAAACACATGAATTTTAA
*
8464314 TGAAAATACAT-AATTTTAA
1 TGAAAACACATGAATTTTAA
8464333 TGAA
1 TGAA
8464337 GATAAATGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.35
Consensus pattern (20 bp):
TGAAAACACATGAATTTTAA
Found at i:8467009 original size:25 final size:26
Alignment explanation
Indices: 8466981--8467038 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
8466971 AAATAAAATC
*
8466981 AAAATATAAAATTAGA-TAT-AATTAT
1 AAAA-ATAAAATTAAATTATAAATTAT
*
8467006 AAAAA-ATAATTAAATTATAAATTAT
1 AAAAATAAAATTAAATTATAAATTAT
8467031 AAAAATAA
1 AAAAATAA
8467039 TTAGGTGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
23 7 0.26
24 4 0.15
25 15 0.56
26 1 0.04
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (26 bp):
AAAAATAAAATTAAATTATAAATTAT
Found at i:8468253 original size:2 final size:2
Alignment explanation
Indices: 8468246--8468274 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8468236 ATCTTTAAAC
8468246 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8468275 TGCTTTAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8472940 original size:32 final size:32
Alignment explanation
Indices: 8472898--8472959 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
8472888 TCGTATTTTC
* * * *
8472898 GAAAATATATTGTACCGACAGTCACAGTTCAG
1 GAAAACATATTATACAGACAATCACAGTTCAG
*
8472930 GAAAACATATTATTCAGACAATCACAGTTC
1 GAAAACATATTATACAGACAATCACAGTTC
8472960 TAGAAGCATG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (32 bp):
GAAAACATATTATACAGACAATCACAGTTCAG
Found at i:8473008 original size:31 final size:31
Alignment explanation
Indices: 8472914--8473024 Score: 132
Period size: 32 Copynumber: 3.5 Consensus size: 31
8472904 ATATTGTACC
* * *
8472914 GACAGTCACAGTTCAGGAAAACATATTATTCA
1 GACAGTCACAGTTCAAG-AAACATTTTGTTCA
* * *
8472946 GACAATCACAGTTCTAGAAGCATGTTTGTTCA
1 GACAGTCACAGTTCAAGAAACAT-TTTGTTCA
8472978 GACAGTCACAGTTCAAGAAACATTTTGTTCA
1 GACAGTCACAGTTCAAGAAACATTTTGTTCA
* *
8473009 AACAGTCATAGTTCAA
1 GACAGTCACAGTTCAA
8473025 ACATCTTAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
31 27 0.40
32 40 0.60
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (31 bp):
GACAGTCACAGTTCAAGAAACATTTTGTTCA
Found at i:8473111 original size:35 final size:35
Alignment explanation
Indices: 8473036--8473104 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
8473026 CATCTTAAAG
* *
8473036 GTAATTTAGAAACATATGATTTATACATCTCACAA
1 GTAATTTAGAAACATATGATTCAGACATCTCACAA
*
8473071 GTAATTTAGAAACATATTG-TTCGGACATCTCACA
1 GTAATTTAGAAACATA-TGATTCAGACATCTCACA
8473105 GATAATTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 28 0.93
36 2 0.07
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (35 bp):
GTAATTTAGAAACATATGATTCAGACATCTCACAA
Found at i:8474670 original size:18 final size:18
Alignment explanation
Indices: 8474637--8474768 Score: 147
Period size: 18 Copynumber: 6.9 Consensus size: 18
8474627 ACTGAATATT
* *
8474637 TGTCTCGAATGGACCATTA
1 TGTCCCGAA-GGACCACTA
* *
8474656 TGTCCCAAAGGACCACTG
1 TGTCCCGAAGGACCACTA
8474674 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
8474692 TGTCCCGAAGGACCACTGA
1 TGTCCCGAAGGACCACT-A
* *
8474711 TTGTTCCGAAGAACCACTA
1 -TGTCCCGAAGGACCACTA
8474730 TGTCCCGAAGGACCACTGTATA
1 TGTCCCGAAGGACCAC----TA
8474752 TGTCCCGAAGGACCACT
1 TGTCCCGAAGGACCACT
8474769 CCTTAAGAAC
Statistics
Matches: 97, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
18 55 0.57
19 9 0.09
20 15 0.15
22 18 0.19
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:8474729 original size:38 final size:38
Alignment explanation
Indices: 8474636--8474768 Score: 180
Period size: 38 Copynumber: 3.5 Consensus size: 38
8474626 CACTGAATAT
* * *
8474636 TTGTCTCGAATGGACCATTATGTCCCAAAGGACCACTG-
1 TTGTCCCGAA-GGACCACTATGTCCCGAAGGACCACTGA
8474674 -TGTCCCGAAGGACCACTATGTCCCGAAGGACCACTGA
1 TTGTCCCGAAGGACCACTATGTCCCGAAGGACCACTGA
* *
8474711 TTGTTCCGAAGAACCACTATGTCCCGAAGGACCACTGTA
1 TTGTCCCGAAGGACCACTATGTCCCGAAGGACCACTG-A
8474750 TATGTCCCGAAGGACCACT
1 T-TGTCCCGAAGGACCACT
8474769 CCTTAAGAAC
Statistics
Matches: 84, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
36 25 0.30
37 8 0.10
38 34 0.40
39 2 0.02
40 15 0.18
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (38 bp):
TTGTCCCGAAGGACCACTATGTCCCGAAGGACCACTGA
Found at i:8475022 original size:24 final size:21
Alignment explanation
Indices: 8474966--8475023 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 21
8474956 ATATCTTCTC
8474966 ATCACTTTTCATATAAACATGT
1 ATCAC-TTTCATATAAACATGT
8474988 ATTTCAC-TTCATATACACACATGT
1 A--TCACTTTCATATA-A-ACATGT
8475012 GATCACTTTCAT
1 -ATCACTTTCAT
8475024 TATTTCACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
22 9 0.30
23 5 0.17
24 15 0.50
25 1 0.03
ACGTcount: A:0.33, C:0.22, G:0.05, T:0.40
Consensus pattern (21 bp):
ATCACTTTCATATAAACATGT
Found at i:8480761 original size:21 final size:21
Alignment explanation
Indices: 8480735--8480777 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
8480725 CAGTGTTCTG
8480735 AAGAACACATCTTGATAACTT
1 AAGAACACATCTTGATAACTT
*
8480756 AAGAACACATCTTGATCACTT
1 AAGAACACATCTTGATAACTT
8480777 A
1 A
8480778 CAGGAACTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (21 bp):
AAGAACACATCTTGATAACTT
Found at i:8481752 original size:18 final size:19
Alignment explanation
Indices: 8481684--8481776 Score: 66
Period size: 18 Copynumber: 4.8 Consensus size: 19
8481674 CTGAATATTT
* *
8481684 GTCCCGAAAGACTACTAT-
1 GTCCCGAAGGACCACTATA
* * *
8481702 GTCTCGAATGACCACTGATT
1 GTCCCGAAGGACCACT-ATA
* *
8481722 GT-TCGAAGAACCACTATA
1 GTCCCGAAGGACCACTATA
8481740 -TCCCGAAGGACCACTGTATA
1 GTCCCGAAGGACCAC--TATA
8481760 TGTCCCGAAGGACCACT
1 -GTCCCGAAGGACCACT
8481777 CCTTAAGAAC
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
17 1 0.02
18 25 0.42
19 13 0.22
20 7 0.12
22 14 0.23
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (19 bp):
GTCCCGAAGGACCACTATA
Found at i:8482537 original size:19 final size:19
Alignment explanation
Indices: 8482513--8482563 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
8482503 TTAAGTAGGT
8482513 GCATCGATGCACTCCTCAG
1 GCATCGATGCACTCCTCAG
*
8482532 GCATCGATGCACTCCTCAT
1 GCATCGATGCACTCCTCAG
8482551 GCATCGATGCACT
1 GCATCGATGCACT
8482564 AATTGCATTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.22, C:0.35, G:0.20, T:0.24
Consensus pattern (19 bp):
GCATCGATGCACTCCTCAG
Found at i:8483387 original size:31 final size:31
Alignment explanation
Indices: 8483349--8483496 Score: 131
Period size: 31 Copynumber: 4.8 Consensus size: 31
8483339 ACAATTTATG
* **
8483349 AAATATATTGTTCAAACAGTTGT-GATTCAGA
1 AAATATATTGTTCAGACAGTCATAG-TTCAGA
* *
8483380 AAATATATTGTTCGGACAGTCATAGTTCAGG
1 AAATATATTGTTCAGACAGTCATAGTTCAGA
8483411 AAATATATTGTTCAGACAGTCATAGTTCACG-
1 AAATATATTGTTCAGACAGTCATAGTTCA-GA
* ** *
8483442 AAACATATTGTTTGGACAGTCACAGTTCATG-
1 AAATATATTGTTCAGACAGTCATAGTTCA-GA
* * * *
8483473 AAGTATTTTGTTTAGACAATCATA
1 AAATATATTGTTCAGACAGTCATA
8483497 ATTAATGATA
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
31 96 0.98
32 2 0.02
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (31 bp):
AAATATATTGTTCAGACAGTCATAGTTCAGA
Found at i:8483430 original size:62 final size:62
Alignment explanation
Indices: 8483348--8483496 Score: 167
Period size: 62 Copynumber: 2.4 Consensus size: 62
8483338 CACAATTTAT
* ** * *
8483348 GAAATATATTGTTCAAACAGTTGT-GATTCA-GAAAATATATTGTTCGGACAGTCATAGTTCAG
1 GAAATATATTGTTCAGACAGTCATAG-TTCACG-AAACATATTGTTCGGACAGTCACAGTTCAG
* *
8483410 GAAATATATTGTTCAGACAGTCATAGTTCACGAAACATATTGTTTGGACAGTCACAGTTCAT
1 GAAATATATTGTTCAGACAGTCATAGTTCACGAAACATATTGTTCGGACAGTCACAGTTCAG
* * * *
8483472 GAAGTATTTTGTTTAGACAATCATA
1 GAAATATATTGTTCAGACAGTCATA
8483497 ATTAATGATA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
62 72 0.97
63 2 0.03
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (62 bp):
GAAATATATTGTTCAGACAGTCATAGTTCACGAAACATATTGTTCGGACAGTCACAGTTCAG
Found at i:8483515 original size:62 final size:62
Alignment explanation
Indices: 8483386--8483516 Score: 145
Period size: 62 Copynumber: 2.1 Consensus size: 62
8483376 CAGAAAATAT
* * * * *
8483386 ATTGTTCGGACAGTCATAGTTCAGGAAATATATTGTTCAGACAGTCATAGTTCACGAAACAT
1 ATTGTTCGGACAGTCACAGTTCAGGAAATATATTGTTCAGACAATCATAATTAACGAAACAC
* * * * * * *
8483448 ATTGTTTGGACAGTCACAGTTCATGAAGTATTTTGTTTAGACAATCATAATTAATGATACAC
1 ATTGTTCGGACAGTCACAGTTCAGGAAATATATTGTTCAGACAATCATAATTAACGAAACAC
*
8483510 GTTGTTC
1 ATTGTTC
8483517 AAACATCTTA
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (62 bp):
ATTGTTCGGACAGTCACAGTTCAGGAAATATATTGTTCAGACAATCATAATTAACGAAACAC
Found at i:8488147 original size:3 final size:3
Alignment explanation
Indices: 8488137--8488184 Score: 57
Period size: 3 Copynumber: 17.0 Consensus size: 3
8488127 AGTTAATTAT
* *
8488137 TAA T-A TAA TAA TAA TAA TAA TAC TAG TAA TAA TAA TAA -AA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8488182 TAA
1 TAA
8488185 AAAGACCCAG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
2 6 0.15
3 34 0.85
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:8488627 original size:137 final size:139
Alignment explanation
Indices: 8488433--8488776 Score: 491
Period size: 137 Copynumber: 2.5 Consensus size: 139
8488423 CTCCTACATA
* * * **
8488433 ATGAGGAGATCAGGTCG-GTGGATGAAAC-AGTTCCTACGTGATGAGGACGACTGGCCATCTTTA
1 ATGAGAAGATCTGGTCGAGTGGATGACACGA-TTCCTACGTGATGAGGACGGTTGGCCATCTTTA
* * *
8488496 GGGATAAATGGTGATAACAC-GATTCCTACGTGATGAGGACGATTGGTTATCTAAGGTTGATACG
65 GGGATAAATGGTGATAACACTG-TTCCTACATGATGAGGACGACTGGTTATCTAAGGTTGACACG
8488560 GCTCATACGTG
129 GCTCATACGTG
* *
8488571 ATGAGAAGATCT-GT-TAGTGGATGACACGATTCCTATGTGATGAGGACGGTTGGCCATCTTTAG
1 ATGAGAAGATCTGGTCGAGTGGATGACACGATTCCTACGTGATGAGGACGGTTGGCCATCTTTAG
*
8488634 GGATAAATGGTGATAACACTGTTCCTACATGATGAGGACGACTGGTTATCTAAGGTTGACGCGGC
66 GGATAAATGGTGATAACACTGTTCCTACATGATGAGGACGACTGGTTATCTAAGGTTGACACGGC
*
8488699 TCCTACGTG
131 TCATACGTG
* * * *
8488708 ATGAGGAGATCTGGTCGGGTGGATGACACGGTTCCTACGTGATGAGGATGGTTGGCCATCTTTAG
1 ATGAGAAGATCTGGTCGAGTGGATGACACGATTCCTACGTGATGAGGACGGTTGGCCATCTTTAG
8488773 GGAT
66 GGAT
8488777 GATTTGTTTC
Statistics
Matches: 183, Mismatches: 18, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
137 121 0.66
138 14 0.08
139 48 0.26
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.27
Consensus pattern (139 bp):
ATGAGAAGATCTGGTCGAGTGGATGACACGATTCCTACGTGATGAGGACGGTTGGCCATCTTTAG
GGATAAATGGTGATAACACTGTTCCTACATGATGAGGACGACTGGTTATCTAAGGTTGACACGGC
TCATACGTG
Found at i:8488941 original size:69 final size:68
Alignment explanation
Indices: 8488781--8489183 Score: 459
Period size: 69 Copynumber: 5.9 Consensus size: 68
8488771 AGGGATGATT
* * * * *
8488781 TGTTTCAAGAGAAACTATCTGAAGAGAGATAAAATTTGTTTCAAGGGAAACAATCTAAAAGATTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAG-GTT
*
8488846 TTTT
65 TTTA
* * * * *
8488850 TGTTTAAAGAGAAATTGTCTCAAGAGATACAAAACTTTGTTTCAAGGGAAACAATCTCGAAGGGT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTTGTTTCAAGGGAAACAATCTCAAAGGTT
8488915 TTTA
65 TTTA
* * *
8488919 TGTCTT-AAGAGAAACTGTCTCAAGAGAGATAAAATTTGTTTCAAGGGAAATAATCTCAAAGATT
1 TGT-TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTT
8488983 TTTA
65 TTTA
* * * * * *
8488987 TGTTTCAAGAGAAATTGTCTCAAGAGAGGCAAAACTTGTTTCTAGAGAAACAATCTCAAAGTTTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAG-GTT
8489052 TTTA
65 TTTA
* *** * * * * * *
8489056 AGAAACAATAGAAACTATCTCAAGAGAGACAGAATATGTTTCAAGGGAAACAATATC-AATGTTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTT
8489120 TTA
66 TTA
* * *
8489123 TGTTTCAAGAGAAACCGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTCAAAG
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAG
8489184 TTCATCAATT
Statistics
Matches: 274, Mismatches: 55, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
67 53 0.19
68 85 0.31
69 109 0.40
70 27 0.10
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.30
Consensus pattern (68 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTT
TTA
Found at i:8489150 original size:136 final size:137
Alignment explanation
Indices: 8488786--8489185 Score: 534
Period size: 137 Copynumber: 2.9 Consensus size: 137
8488776 TGATTTGTTT
* * *
8488786 CAAGAGAAACTATCTGAAGAGAGATAAAATTTGTTTCAAGGGAAACAATCTAAAAGATTTTTTTT
1 CAAGAGAAACTATCTCAAGAGAGATAAAATTTGTTTCAAGGGAAACAATCTCAAAGA-TTTTTAT
* * * * *
8488851 GTTTAAAGAGAAATTGTCTCAAGAGATACAAAACTTTGTTTCAAGGGAAACAATCTCGAAG-GGT
65 GTTTCAAGAGAAATTGTCTCAAGAGAGACAAAAC-TTGTTTCAAGAGAAACAATCTCAAAGTTGT
* ***
8488915 TTTATGTCT
129 TTTAAGAAA
* * *
8488924 TAAGAGAAACTGTCTCAAGAGAGATAAAATTTGTTTCAAGGGAAATAATCTCAAAGATTTTTATG
1 CAAGAGAAACTATCTCAAGAGAGATAAAATTTGTTTCAAGGGAAACAATCTCAAAGATTTTTATG
* * *
8488989 TTTCAAGAGAAATTGTCTCAAGAGAGGCAAAACTTGTTTCTAGAGAAACAATCTCAAAGTTTTTT
66 TTTCAAGAGAAATTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTCAAAGTTGTTT
8489054 TAAGAAA
131 TAAGAAA
* * * * * *
8489061 CAATAGAAACTATCTCAAGAGAGACAGAATATGTTTCAAGGGAAACAATATCAATG-TTTTTATG
1 CAAGAGAAACTATCTCAAGAGAGATAAAATTTGTTTCAAGGGAAACAATCTCAAAGATTTTTATG
**
8489125 TTTCAAGAGAAACCGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTCAAAGTT
66 TTTCAAGAGAAATTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTCAAAGTT
8489186 CATCAATTTT
Statistics
Matches: 230, Mismatches: 31, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
136 88 0.38
137 90 0.39
138 52 0.23
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (137 bp):
CAAGAGAAACTATCTCAAGAGAGATAAAATTTGTTTCAAGGGAAACAATCTCAAAGATTTTTATG
TTTCAAGAGAAATTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTCAAAGTTGTTT
TAAGAAA
Found at i:8489295 original size:101 final size:101
Alignment explanation
Indices: 8489134--8489368 Score: 225
Period size: 101 Copynumber: 2.3 Consensus size: 101
8489124 GTTTCAAGAG
* * * * *
8489134 AAACCGTCTCAAGAGAGAC-AAAACT-TGTTTCAAGAGAAACAATCTCAAAGTTCATCAATTTTG
1 AAACTGTCTCAAGCGAGACGAAATCTGT-TTTGAA-AGAAACAATCTCAAAGATCATCAATTTTG
* **
8489197 TTTT-AGGTGAAACAA-TTTCCAAATTT-TGTATTTTGAGG-
64 TTTTCA-GTAAAACAACTTT-CAAATTTATG--TTCCGAGGA
* *
8489235 AAACATGTCTCAAGCGAGACG-AATCTGTTTTGAAAGAAACAATCTCAATTGAT-ATTAATTTTG
1 AAAC-TGTCTCAAGCGAGACGAAATCTGTTTTGAAAGAAACAATCTCAA-AGATCATCAATTTTG
*
8489298 TTTTCAGTAAAACAACTTTGAAATTTATGTTCCGAGGA
64 TTTTCAGTAAAACAACTTTCAAATTTATGTTCCGAGGA
* *
8489336 AAACTGTCTCAAGTGAGACGAAATTTGTTTTGA
1 AAACTGTCTCAAGCGAGACGAAATCTGTTTTGA
8489369 GTAAAACAAT
Statistics
Matches: 112, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
100 21 0.19
101 60 0.54
102 30 0.27
103 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (101 bp):
AAACTGTCTCAAGCGAGACGAAATCTGTTTTGAAAGAAACAATCTCAAAGATCATCAATTTTGTT
TTCAGTAAAACAACTTTCAAATTTATGTTCCGAGGA
Found at i:8492058 original size:44 final size:47
Alignment explanation
Indices: 8491950--8492064 Score: 137
Period size: 44 Copynumber: 2.5 Consensus size: 47
8491940 ACCTTTTATC
8491950 CCATAAGCTCATAAGCTTATTTTTACCAAAATACTTACCATTTAAAATT
1 CCATAAGCTCATAAGCTTATTTTTACCAAAATACTTACCATTT--AATT
* ** * *
8491999 CCATAAGCTCGTAAGCTT-TTTTTTTCAATATACTTGCCA-TT-ATT
1 CCATAAGCTCATAAGCTTATTTTTACCAAAATACTTACCATTTAATT
*
8492043 CCGTAAGCTCATAAGCTTATTT
1 CCATAAGCTCATAAGCTTATTT
8492065 GCATGGTTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 19 0.33
45 3 0.05
47 2 0.03
48 17 0.29
49 17 0.29
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (47 bp):
CCATAAGCTCATAAGCTTATTTTTACCAAAATACTTACCATTTAATT
Found at i:8497313 original size:6 final size:6
Alignment explanation
Indices: 8497302--8497330 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8497292 CCTTGTATCA
8497302 TGACCG TGACCG TGACCG TGACCG TGACC
1 TGACCG TGACCG TGACCG TGACCG TGACC
8497331 TATGAGTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.34, G:0.31, T:0.17
Consensus pattern (6 bp):
TGACCG
Found at i:8499167 original size:46 final size:48
Alignment explanation
Indices: 8499044--8499173 Score: 142
Period size: 46 Copynumber: 2.8 Consensus size: 48
8499034 ATATAAATTT
* *
8499044 CTTACC-TTTTATCCCATAAGCTCATAAGCTTA-TTTTTACCAAAATA
1 CTTACCATTTAATTCCATAAGCTCATAAGCTTATTTTTTACCAAAATA
* ** *
8499090 CTTACCATTTAAAATTCCATAAGCTCGTAAGCTTATTTTTTTTCAATATA
1 CTTACCATTT--AATTCCATAAGCTCATAAGCTTATTTTTTACCAAAATA
* *
8499140 CTTGCCA-TT-ATTCCGTAAGCTCATAAGCTTATTT
1 CTTACCATTTAATTCCATAAGCTCATAAGCTTATTT
8499174 GCATGGTTAC
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
46 29 0.41
47 3 0.04
49 22 0.31
50 17 0.24
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.42
Consensus pattern (48 bp):
CTTACCATTTAATTCCATAAGCTCATAAGCTTATTTTTTACCAAAATA
Found at i:8506165 original size:3 final size:3
Alignment explanation
Indices: 8506153--8506216 Score: 80
Period size: 3 Copynumber: 22.0 Consensus size: 3
8506143 AGTTAATTGT
* *
8506153 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAG T-A TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8506198 TAA TAA TAA TAAA TAA TAA
1 TAA TAA TAA T-AA TAA TAA
8506217 AAAGACCCAG
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
2 5 0.09
3 45 0.85
4 3 0.06
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8510836 original size:77 final size:79
Alignment explanation
Indices: 8510747--8510901 Score: 208
Period size: 77 Copynumber: 2.0 Consensus size: 79
8510737 TTTGAATTAA
* * *
8510747 TTAAACTCTTATTTAATTAATT-CAAATTAAATATCCATTA-AAGACTTGTAATCTGAATAACAC
1 TTAAACTCTTATTTAATT-ATTCCAAATTAAATATCCAATAGAAGACTTATAATCAGAATAACAC
*
8510810 T-TTTTATTGTTTAT
65 TATTTTAATGTTTAT
* * * *
8510824 TTAAACTTTTATTTAATTATTCCAAATTAAATATCCAATAGAAGAGTTATAATCAGAATTACATT
1 TTAAACTCTTATTTAATTATTCCAAATTAAATATCCAATAGAAGACTTATAATCAGAATAACACT
8510889 ATTTTAATGTTTA
66 ATTTTAATGTTTA
8510902 CTTACTATAT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
76 3 0.04
77 34 0.51
78 19 0.28
79 11 0.16
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (79 bp):
TTAAACTCTTATTTAATTATTCCAAATTAAATATCCAATAGAAGACTTATAATCAGAATAACACT
ATTTTAATGTTTAT
Found at i:8524746 original size:32 final size:32
Alignment explanation
Indices: 8524705--8524767 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
8524695 TTAGTCTTCA
* *
8524705 ACTCTTTTAATTTCATCGGTTCCATGCGATAG
1 ACTCTTTTAATTTCATCAGTGCCATGCGATAG
**
8524737 ACTCTTTTAATTTTGTCAGTGCCATGCGATA
1 ACTCTTTTAATTTCATCAGTGCCATGCGATA
8524768 AGGAGCAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (32 bp):
ACTCTTTTAATTTCATCAGTGCCATGCGATAG
Found at i:8529443 original size:21 final size:19
Alignment explanation
Indices: 8529419--8529459 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
8529409 ACCATCATCA
8529419 TTATCTATTCCACTTTCATTT
1 TTATCT-TTCCA-TTTCATTT
*
8529440 TTATCTTTTCATTTCATTT
1 TTATCTTTCCATTTCATTT
8529459 T
1 T
8529460 GTTCTCATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
20 4 0.21
21 6 0.32
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (19 bp):
TTATCTTTCCATTTCATTT
Found at i:8535283 original size:82 final size:78
Alignment explanation
Indices: 8535137--8535288 Score: 173
Period size: 82 Copynumber: 1.9 Consensus size: 78
8535127 ATTAATAAAT
* *
8535137 AAAACATTATTTAATTAATTTAATTAAATATACATTAAAGACTTATAATCTGAATTATAATC-TT
1 AAAACATTATTTAATTAATTTAATTAAATATACATTAAAGACTTATAATCTAAATTACAATCTTT
8535201 TAATGTTTATTTA
66 TAATGTTTATTTA
* * * *
8535214 AAAAC-TTATTTAATTATTTCTAATTATATATATTCCAATTAAAAGAGTTGTAATCTAAATTACA
1 AAAACATTATTTAATTAATT-TAATTA-A-ATA-TAC-ATT-AAAGACTTATAATCTAAATTACA
*
8535278 TTCTTTTAATG
60 ATCTTTTAATG
8535289 CTTACTTACT
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
76 13 0.21
77 11 0.18
78 1 0.02
79 3 0.05
80 2 0.03
81 3 0.05
82 21 0.34
83 7 0.11
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (78 bp):
AAAACATTATTTAATTAATTTAATTAAATATACATTAAAGACTTATAATCTAAATTACAATCTTT
TAATGTTTATTTA
Found at i:8544060 original size:20 final size:19
Alignment explanation
Indices: 8544006--8544060 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
8543996 AATTCAATTG
*
8544006 ATAAAATTAAAGATCAATA
1 ATAAAATTAAAGATAAATA
*
8544025 ATAAATTATAAAGATAAATA
1 ATAAAAT-TAAAGATAAATA
*
8544045 ATTAAAATTAATGATA
1 A-TAAAATTAAAGATA
8544061 TAATTTATCC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 6 0.20
20 19 0.63
21 5 0.17
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (19 bp):
ATAAAATTAAAGATAAATA
Found at i:8551331 original size:14 final size:14
Alignment explanation
Indices: 8551312--8551339 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8551302 TCAGTTAATT
8551312 GTGAGAAAGAACAA
1 GTGAGAAAGAACAA
8551326 GTGAGAAAGAACAA
1 GTGAGAAAGAACAA
8551340 ATCAACAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.29, T:0.07
Consensus pattern (14 bp):
GTGAGAAAGAACAA
Found at i:8551432 original size:27 final size:28
Alignment explanation
Indices: 8551377--8551434 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 28
8551367 GGTATCCTTC
*
8551377 CTTGCTAATATATATGTTTTATTATTTA
1 CTTGCTAATATATATGTTTTATTAATTA
*
8551405 CTTGCTACTATAT-TGTTTTATTAATTA
1 CTTGCTAATATATATGTTTTATTAATTA
8551432 CTT
1 CTT
8551435 TTAAATATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
27 16 0.57
28 12 0.43
ACGTcount: A:0.26, C:0.10, G:0.07, T:0.57
Consensus pattern (28 bp):
CTTGCTAATATATATGTTTTATTAATTA
Found at i:8568635 original size:617 final size:611
Alignment explanation
Indices: 8567410--8568638 Score: 2288
Period size: 617 Copynumber: 2.0 Consensus size: 611
8567400 TTTGAATAAC
8567410 TTTAATTGAAGGTCTTCATCTTATACCCAATTGCTGAATTATTTATATGTATCAGTTTTGTATTT
1 TTTAATTGAAGGTCTTCATCTTATACCCAATTGCTGAATTATTTATATGTATCAGTTTTGTATTT
8567475 AGTTCTTAATTATATTAAGAAATTTGATCAAGTGATTGTGGAGTTTTTTTTTGCTTTGATTCAGG
66 AGTTCTTAATTATATTAAGAAATTTGATCAAGTGATTGTGGAGTTTTTTTTTGCTTTGATTCAGG
8567540 ATAAGACATCCTTTTCTTCCTTAATGATTGAGTTTTTTCCTGTATAGAATTTTGTTCTTATGGTA
131 ATAAGACATCCTTTTCTTCCTTAATGATTGAGTTTTTTCCTGTATAGAATTTTGTTCTTATGGTA
8567605 TATAATTGTGATATATATTTTTTTGCAGCTATGATGGCATACTTCTTAGTTCTCTAAGGCAAGAG
196 TATAATTGTGATATATATTTTTTTGCAGCTATGATGGCATACTTCTTAGTTCTCTAAGGCAAGAG
8567670 TGTATTTTCTAGGTAATATTATAATTTTTTCTATGTAATACTCTGTACCTATTGCTTTCAGAAGT
261 TGTATTTTCTAGGTAATATTATAATTTTTTCTATGTAATACTCTGTACCTATTGCTTTCAGAAGT
8567735 TTAAGATTACTTTAGCATACATGATGAAGACATTATTAATTCGTTTATTTTGATCTTTTACCATG
326 TTAAGATTACTTTAGCATACATGATGAAGACATTATTAATTCGTTTATTTTGATCTTTTACCATG
8567800 TACGTTTGAAAATTTCGCCGGATCTGTTACTTGTCTGAGTCAATTAACAAGAATGAGTTTACTTG
391 TACGTTTGAAAATTTCGCCGGATCTGTTACTTGTCTGAGTCAATTAACAAGAATGAGTTTACTTG
*
8567865 TGATAGTTTTTATGCAGGAACCTTTCAACTCTATTCCGCTCATATGGACAATCCATGAAAGAGTG
456 TGATAGTTTTTATGCAGGAACCTTTCAAATCTATTCCGCTCATATGGACAATCCATGAAAGAGTG
8567930 CTTGCTGTACGTTCTAGAGAATACACTTCAAGTGGGTAGATTGAGCTTGTGAATGATTGGAAAAA
521 CTTGCTGTACGTTCTAGAGAATACACTTCAAGTGGGTAGATTGAGCTTGTGAATGATTGGAAAAA
*
8567995 GGTTTTCAGTCGTGCTACTGTTGTCG
586 GGTTTTCAGTCATGCTACTGTTGTCG
8568021 TTTAATTGAAGGTCTTCATC-TATACCCAATTGCTGAATTATTTATATGTATCAGTTTTGTATTT
1 TTTAATTGAAGGTCTTCATCTTATACCCAATTGCTGAATTATTTATATGTATCAGTTTTGTA-TT
*
8568085 TAGTTCTTAATTATATTAAGAAATTTGATCAAGTGATTGTGGAGTTTTTTTTTTTGCTTTTATTC
65 TAGTTCTTAATTATATTAAGAAATTTGATCAAGTGATTGTGGAG--TTTTTTTTTGCTTTGATTC
8568150 AGGATAAGACATCCTTTTCTTCCTTAATGATTGAG-TTTTTCCTGTATAGAATTTTGTTCTTATG
128 AGGATAAGACATCCTTTTCTTCCTTAATGATTGAGTTTTTTCCTGTATAGAATTTTGTTCTTAT-
8568214 GGTATATAATTGTGATATATATTTTTTTGCAGCTATGATGGCATACTTCTTAGTTCTCTTAAGGC
192 GGTATATAATTGTGATATATATTTTTTTGCAGCTATGATGGCATACTTCTTAGTTCTC-TAAGGC
8568279 AAAGAGTGTATTTTCTAGGTAAGATATTATAA-TTTTTCATATGTAAATACTCTGTACCTATTGC
256 -AAGAGTGTATTTTCTAGGT-A-ATATTATAATTTTTTC-TATGT-AATACTCTGTACCTATTGC
*
8568343 TTTCAGAAGTTTAAGATTACTTTATCATACATGATGAAGACATTATTAATTCGTTT-TATTTGAT
316 TTTCAGAAGTTTAAGATTACTTTAGCATACATGATGAAGACATTATTAATTCGTTTAT-TTTGAT
8568407 CTTTTACCATGTACGTTTGAAAATTTCGCCGGATCTGTTACTTGTCTGAGTCAATTAACAAGAAT
380 CTTTTACCATGTACGTTTGAAAATTTCGCCGGATCTGTTACTTGTCTGAGTCAATTAACAAGAAT
8568472 GAGTTTACTTGTGATAG-TTTTATGCAGGAACCTTTCAAATCTATTCCGCTCATATGGACAATCC
445 GAGTTTACTTGTGATAGTTTTTATGCAGGAACCTTTCAAATCTATTCCGCTCATATGGACAATCC
8568536 ATGAAAGAGTGCTTGCTGTACGTTCTAGAGAATACACTTCAAGTGGGTAGATTGAGCTTGTGAAT
510 ATGAAAGAGTGCTTGCTGTACGTTCTAGAGAATACACTTCAAGTGGGTAGATTGAGCTTGTGAAT
8568601 GATTGGAAAAAGGTTTTCAGTCATGCTACTGTTGTCG
575 GATTGGAAAAAGGTTTTCAGTCATGCTACTGTTGTCG
8568638 T
1 T
8568639 CTTACCAGAC
Statistics
Matches: 603, Mismatches: 4, Indels: 16
0.97 0.01 0.03
Matches are distributed among these distances:
610 41 0.07
611 66 0.11
612 28 0.05
613 111 0.18
614 6 0.01
615 19 0.03
616 7 0.01
617 163 0.27
618 162 0.27
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.42
Consensus pattern (611 bp):
TTTAATTGAAGGTCTTCATCTTATACCCAATTGCTGAATTATTTATATGTATCAGTTTTGTATTT
AGTTCTTAATTATATTAAGAAATTTGATCAAGTGATTGTGGAGTTTTTTTTTGCTTTGATTCAGG
ATAAGACATCCTTTTCTTCCTTAATGATTGAGTTTTTTCCTGTATAGAATTTTGTTCTTATGGTA
TATAATTGTGATATATATTTTTTTGCAGCTATGATGGCATACTTCTTAGTTCTCTAAGGCAAGAG
TGTATTTTCTAGGTAATATTATAATTTTTTCTATGTAATACTCTGTACCTATTGCTTTCAGAAGT
TTAAGATTACTTTAGCATACATGATGAAGACATTATTAATTCGTTTATTTTGATCTTTTACCATG
TACGTTTGAAAATTTCGCCGGATCTGTTACTTGTCTGAGTCAATTAACAAGAATGAGTTTACTTG
TGATAGTTTTTATGCAGGAACCTTTCAAATCTATTCCGCTCATATGGACAATCCATGAAAGAGTG
CTTGCTGTACGTTCTAGAGAATACACTTCAAGTGGGTAGATTGAGCTTGTGAATGATTGGAAAAA
GGTTTTCAGTCATGCTACTGTTGTCG
Found at i:8574932 original size:21 final size:21
Alignment explanation
Indices: 8574903--8574955 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8574893 ATTCTGACTA
8574903 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
8574924 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
8574945 TCGCAATGCGA
1 TCGCATTGCGA
8574956 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:8574975 original size:41 final size:41
Alignment explanation
Indices: 8574903--8575356 Score: 481
Period size: 41 Copynumber: 11.1 Consensus size: 41
8574893 ATTCTGACTA
* ** * * *
8574903 TCGCATTGCGATTTCCCAAATTCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTAA-TCGCATTGCGATTTACGTAAT
* * * *
8574945 TCGCAATGCGA-ATACGTAAATCGCAATGCGA-TTACGTAAA
1 TCGCATTGCGATTTACGT-AATCGCATTGCGATTTACGTAAT
* * * * * *
8574985 TCGCAATGCGAATTAGGAAAATCGCAATGCGA-TTACGTAAA
1 TCGCATTGCGATTTACG-TAATCGCATTGCGATTTACGTAAT
* * * * * * *
8575026 TCGCAATGCGAATTAGGAAATCGCAATGCGAATTACGTAAA
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTAAT
*
8575067 TCGCATTGCGA-TTACGTATTCGCATTGCGATTTACGTAA-
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTAAT
*
8575106 TCGCATTGCCATTTACGTAATCGCATTGCGATTTACGTAAT
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTAAT
* *
8575147 TCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGTAA-
1 TCGCATTGCGATTTACGTAA-TCGCATTGCGATTTACGTAAT
* * * *
8575188 TCGCATTGCGATTTTCCTAATTCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTAA-TCGCATTGCGATTTACGTAAT
* * *
8575230 TCGTATTGCGATTTACGTAATCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTAAT
* *
8575271 TCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTAAT
*
8575312 TCGCATTGCGATTTACGTAATCGCATTGCGATTTA-GTAAA
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTAAT
8575352 TCGCA
1 TCGCA
8575357 ACGAGATTCT
Statistics
Matches: 371, Mismatches: 33, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
39 10 0.03
40 89 0.24
41 223 0.60
42 49 0.13
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (41 bp):
TCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTAAT
Found at i:8575013 original size:61 final size:60
Alignment explanation
Indices: 8574945--8575357 Score: 280
Period size: 62 Copynumber: 6.8 Consensus size: 60
8574935 TTTTCCTAAT
* *
8574945 TCGCAATGCGAATACGTAAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGATTACGTAAATCGCAATGCGATTACGTAAATCGCAATGCGAATTACG-AAA
*
8575006 TCGCAATGCGATTACGTAAATCGCAATGCGAATTA-GGAAATCGCAATGCGAATTACGTAAA
1 TCGCAATGCGATTACGTAAATCGCAATGCG-ATTACGTAAATCGCAATGCGAATTACG-AAA
* * * * * * *
8575067 TCGCATTGCGATTACGT-ATTCGCATTGCGATTTACGT-AATCGCATTGCCATTTACGTAA
1 TCGCAATGCGATTACGTAAATCGCAATGCGA-TTACGTAAATCGCAATGCGAATTACGAAA
* * * * * * * * *
8575126 TCGCATTGCGATTTACGTAATTCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGTAA
1 TCGCAATGCGA-TTACGTAAATCGCAATGCGA-TTACGTAAATCGCAATGCGAATTACGAAA
* * * * * * * * * * * *
8575188 TCGCATTGCGATTTTCCTAATTCGCATTGCGATTTTCCTAATTCGTATTGCGATTTACGTAA
1 TCGCAATGCGA-TTACGTAAATCGCAATGCGA-TTACGTAAATCGCAATGCGAATTACGAAA
* * * * * * * * * *
8575250 TCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGT-AATCGCATTGCGATTTTCCTAAT
1 TCGCAATGCGA-TTACGTAAATCGCAATGCGA-TTACGTAAATCGCAATGCGA-ATTACGAAA
* *
8575312 TCGCATTGCGATTTACGT-AATCGCATTGCGATTTA-GTAAATCGCAA
1 TCGCAATGCGA-TTACGTAAATCGCAATGCGA-TTACGTAAATCGCAA
8575358 CGAGATTCTG
Statistics
Matches: 313, Mismatches: 31, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
59 14 0.04
60 37 0.12
61 121 0.39
62 141 0.45
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (60 bp):
TCGCAATGCGATTACGTAAATCGCAATGCGATTACGTAAATCGCAATGCGAATTACGAAA
Found at i:8575152 original size:21 final size:21
Alignment explanation
Indices: 8574903--8575356 Score: 475
Period size: 20 Copynumber: 22.2 Consensus size: 21
8574893 ATTCTGACTA
* **
8574903 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTACGTAAT
* * *
8574924 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTAAT
* * *
8574945 TCGCAATGCGA-ATACGTAAA
1 TCGCATTGCGATTTACGTAAT
* *
8574965 TCGCAATGCGA-TTACGTAAA
1 TCGCATTGCGATTTACGTAAT
* * * * *
8574985 TCGCAATGCGAATTAGGAAAA
1 TCGCATTGCGATTTACGTAAT
* *
8575006 TCGCAATGCGA-TTACGTAAA
1 TCGCATTGCGATTTACGTAAT
* * * *
8575026 TCGCAATGCGAATTA-GGAAA
1 TCGCATTGCGATTTACGTAAT
* * *
8575046 TCGCAATGCGAATTACGTAAA
1 TCGCATTGCGATTTACGTAAT
8575067 TCGCATTGCGA-TTACGT-AT
1 TCGCATTGCGATTTACGTAAT
8575086 TCGCATTGCGATTTACGTAA-
1 TCGCATTGCGATTTACGTAAT
*
8575106 TCGCATTGCCATTTACGTAA-
1 TCGCATTGCGATTTACGTAAT
8575126 TCGCATTGCGATTTACGTAAT
1 TCGCATTGCGATTTACGTAAT
* *
8575147 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTAAT
8575168 TCGCATTGCGATTTACGTAA-
1 TCGCATTGCGATTTACGTAAT
* *
8575188 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTAAT
* *
8575209 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTAAT
*
8575230 TCGTATTGCGATTTACGTAA-
1 TCGCATTGCGATTTACGTAAT
* *
8575250 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTAAT
8575271 TCGCATTGCGATTTACGTAA-
1 TCGCATTGCGATTTACGTAAT
* *
8575291 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTAAT
8575312 TCGCATTGCGATTTACGTAA-
1 TCGCATTGCGATTTACGTAAT
*
8575332 TCGCATTGCGATTTA-GTAAA
1 TCGCATTGCGATTTACGTAAT
8575352 TCGCA
1 TCGCA
8575357 ACGAGATTCT
Statistics
Matches: 385, Mismatches: 38, Indels: 21
0.87 0.09 0.05
Matches are distributed among these distances:
19 16 0.04
20 195 0.51
21 174 0.45
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTACGTAAT
Found at i:8576120 original size:13 final size:13
Alignment explanation
Indices: 8576099--8576130 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8576089 CCACAACCTT
*
8576099 TCCCTAATCCAAA
1 TCCCAAATCCAAA
8576112 TCCCAAATCCAAA
1 TCCCAAATCCAAA
8576125 TCCCAA
1 TCCCAA
8576131 TCAACTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.19
Consensus pattern (13 bp):
TCCCAAATCCAAA
Found at i:8576276 original size:24 final size:24
Alignment explanation
Indices: 8576225--8576278 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
8576215 GTATTCAAAA
* *
8576225 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTAGTCAATACCCAGAC
* *
8576249 TTTGATCTTAGTCAATACTCAGAT
1 TTTGATCTTAGTCAATACCCAGAC
8576273 TTTGAT
1 TTTGAT
8576279 GATTTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.41
Consensus pattern (24 bp):
TTTGATCTTAGTCAATACCCAGAC
Found at i:8578842 original size:14 final size:14
Alignment explanation
Indices: 8578823--8578924 Score: 69
Period size: 14 Copynumber: 6.6 Consensus size: 14
8578813 ACGAAATGAA
8578823 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
8578837 AATCGCAATGAGAG
1 AATCGCAACGAGAG
*
8578851 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
8578870 AATTGCAACGAGAG
1 AATCGCAACGAGAG
*
8578884 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
8578903 AATCGCAACGAGGG
1 AATCGCAACGAGAG
8578917 AATCGCAA
1 AATCGCAA
8578925 AGCGAAATGA
Statistics
Matches: 69, Mismatches: 9, Indels: 20
0.70 0.09 0.20
Matches are distributed among these distances:
14 39 0.57
15 2 0.03
16 3 0.04
17 4 0.06
18 2 0.03
19 19 0.28
ACGTcount: A:0.44, C:0.18, G:0.25, T:0.13
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:8578888 original size:33 final size:33
Alignment explanation
Indices: 8578837--8578945 Score: 182
Period size: 33 Copynumber: 3.3 Consensus size: 33
8578827 GCAACGAGAG
*
8578837 AATCGCAATGAGAGAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAA
*
8578870 AATTGCAACGAGAGAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAA
* *
8578903 AATCGCAACGAGGGAATCGCAAAGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAA
8578936 AATCGCAACG
1 AATCGCAACG
8578946 CGAATTTAGT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 71 1.00
ACGTcount: A:0.45, C:0.17, G:0.25, T:0.13
Consensus pattern (33 bp):
AATCGCAACGAGAGAATCGCAATGCGAAATGAA
Found at i:8578941 original size:19 final size:19
Alignment explanation
Indices: 8578851--8578949 Score: 65
Period size: 19 Copynumber: 5.7 Consensus size: 19
8578841 GCAATGAGAG
*
8578851 AATCGCAATGCGAAATGAA
1 AATCGCAAAGCGAAATGAA
* *
8578870 AATTGC-AA-CG--A-GAG
1 AATCGCAAAGCGAAATGAA
*
8578884 AATCGCAATGCGAAATGAA
1 AATCGCAAAGCGAAATGAA
**
8578903 AATCGC-AA-CG--A-GGG
1 AATCGCAAAGCGAAATGAA
8578917 AATCGCAAAGCGAAATGAA
1 AATCGCAAAGCGAAATGAA
*
8578936 AATCGCAACGCGAA
1 AATCGCAAAGCGAA
8578950 TTTAGTTTCG
Statistics
Matches: 58, Mismatches: 12, Indels: 20
0.64 0.13 0.22
Matches are distributed among these distances:
14 14 0.24
15 5 0.09
16 4 0.07
17 4 0.07
18 4 0.07
19 27 0.47
ACGTcount: A:0.45, C:0.18, G:0.24, T:0.12
Consensus pattern (19 bp):
AATCGCAAAGCGAAATGAA
Found at i:8578980 original size:19 final size:19
Alignment explanation
Indices: 8578945--8579021 Score: 85
Period size: 19 Copynumber: 4.3 Consensus size: 19
8578935 AAATCGCAAC
*
8578945 GCGAATTTAGTTTCGCGTT
1 GCGATTTTAGTTTCGCGTT
8578964 GCGATTTTAGTTTCGCGTT
1 GCGATTTTAGTTTCGCGTT
8578983 GCGATTTT-G--T--CGTT
1 GCGATTTTAGTTTCGCGTT
*
8578997 GCGATTTTCA-TTTTGCGTT
1 GCGATTTT-AGTTTCGCGTT
8579016 GCGATT
1 GCGATT
8579022 CTCTCGTTGC
Statistics
Matches: 51, Mismatches: 1, Indels: 12
0.80 0.02 0.19
Matches are distributed among these distances:
14 12 0.24
16 1 0.02
17 1 0.02
18 1 0.02
19 36 0.71
ACGTcount: A:0.12, C:0.16, G:0.26, T:0.47
Consensus pattern (19 bp):
GCGATTTTAGTTTCGCGTT
Found at i:8579002 original size:33 final size:33
Alignment explanation
Indices: 8578960--8579053 Score: 136
Period size: 33 Copynumber: 2.8 Consensus size: 33
8578950 TTTAGTTTCG
* *
8578960 CGTTGCGATTTT-AGTTTCGCGTTGCGATTTTGT
1 CGTTGCGATTTTCA-TTTCGCGTTGCGATTCTCT
*
8578993 CGTTGCGATTTTCATTTTGCGTTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCGTTGCGATTCTCT
*
8579026 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCGTTGCGAT
8579054 AGTCATTTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
33 54 0.98
34 1 0.02
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCGTTGCGATTCTCT
Found at i:8579050 original size:19 final size:19
Alignment explanation
Indices: 8578955--8579053 Score: 76
Period size: 19 Copynumber: 5.7 Consensus size: 19
8578945 GCGAATTTAG
8578955 TTTCGCGTTGCGATTTT-A
1 TTTCGCGTTGCGATTTTCA
8578973 GTTTCGCGTTGCGA-TTT--
1 -TTTCGCGTTGCGATTTTCA
*
8578990 TGT--CGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
*
8579007 TTTTGCGTTGCGA--TTC-
1 TTTCGCGTTGCGATTTTCA
*
8579023 --TCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
*
8579040 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
8579054 AGTCATTTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 17 0.27
15 3 0.05
16 5 0.08
17 5 0.08
18 3 0.05
19 31 0.48
ACGTcount: A:0.10, C:0.19, G:0.23, T:0.47
Consensus pattern (19 bp):
TTTCGCGTTGCGATTTTCA
Found at i:8579179 original size:14 final size:14
Alignment explanation
Indices: 8579160--8579196 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
8579150 CATCAATTAA
8579160 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
8579174 ACAAATCATCTTTT
1 ACAAATCAACTTTT
*
8579188 ACGAATCAA
1 ACAAATCAA
8579197 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.43, C:0.22, G:0.03, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:8581128 original size:20 final size:19
Alignment explanation
Indices: 8581067--8581160 Score: 116
Period size: 19 Copynumber: 4.8 Consensus size: 19
8581057 TCTGGAACTT
*
8581067 AAAATCGCAACGTGAAAAATG
1 AAAATCGCAACGCG--AAATG
**
8581088 ACTATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
*
8581107 AAAATCGCAACGAGAGAATG
1 AAAATCGCAACGCGA-AATG
*
8581127 AAAATCGCAACGCGAAACG
1 AAAATCGCAACGCGAAATG
8581146 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
8581161 TTATAGTTTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
19 35 0.55
20 18 0.28
21 11 0.17
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:8581136 original size:39 final size:40
Alignment explanation
Indices: 8581067--8581157 Score: 130
Period size: 39 Copynumber: 2.3 Consensus size: 40
8581057 TCTGGAACTT
* ** *
8581067 AAAATCGCAACGTGAAAAATGACTATCGCAACGCGAAATG
1 AAAATCGCAACGAGAAAAATGAAAATCGCAACGCGAAACG
*
8581107 AAAATCGCAACGAG-AGAATGAAAATCGCAACGCGAAACG
1 AAAATCGCAACGAGAAAAATGAAAATCGCAACGCGAAACG
8581146 AAAATCGCAACG
1 AAAATCGCAACG
8581158 CGATTATAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 33 0.72
40 13 0.28
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.11
Consensus pattern (40 bp):
AAAATCGCAACGAGAAAAATGAAAATCGCAACGCGAAACG
Found at i:8581205 original size:19 final size:19
Alignment explanation
Indices: 8581166--8581301 Score: 102
Period size: 20 Copynumber: 7.3 Consensus size: 19
8581156 CGCGATTATA
* *
8581166 GTTTCGCGTTGCAATTTTTT
1 GTTTCGCGTTGCGA-TTTTC
*
8581186 GTTTCGCGTTGCGATTTTTG
1 GTTTCGCGTTGCGA-TTTTC
* * *
8581206 GTTTTGCTTTACGATTTT-
1 GTTTCGCGTTGCGATTTTC
8581224 G--T--CGTTGCGATTTTC
1 GTTTCGCGTTGCGATTTTC
* *
8581239 ATTTCGCGTTGCGATTATC
1 GTTTCGCGTTGCGATTTTC
*
8581258 GTTTCGTGTTGCGATTTTC
1 GTTTCGCGTTGCGATTTTC
* *
8581277 ATTCTCTCGTTGCGATTTTC
1 GTT-TCGCGTTGCGATTTTC
*
8581297 ATTTC
1 GTTTC
8581302 AACCAAAAGA
Statistics
Matches: 95, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
14 10 0.11
16 1 0.01
17 1 0.01
18 1 0.01
19 36 0.38
20 46 0.48
ACGTcount: A:0.10, C:0.18, G:0.21, T:0.51
Consensus pattern (19 bp):
GTTTCGCGTTGCGATTTTC
Found at i:8581539 original size:94 final size:93
Alignment explanation
Indices: 8581392--8581672 Score: 446
Period size: 94 Copynumber: 3.1 Consensus size: 93
8581382 ATGGATTGCA
* *
8581392 TTACTTCAACCAAAAGACAAAAC-AAGACAAATACTAACTTCAGAGTATTAAAGAATACACAGTT
1 TTACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTT
* *
8581456 TAGCAGAATTGGCAGCAAACGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAATAAAT
8581484 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
8581549 TTAGCAGAATTGGCAGCAACCGAATAAAT
65 TTAGCAGAATTGGCAGCAACCGAATAAAT
*
8581578 TTACTTCAACCAAAAGACAAAACAAAAGACAAATACTAACTTCACAGTGTT----AATAAACAGT
1 TTACTTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
* *
8581639 TTAGCAGTATTTGCAGCAACCGAATAAAT
65 TTAGCAGAATTGGCAGCAACCGAATAAAT
8581668 TTACT
1 TTACT
8581673 AAGCAATCTA
Statistics
Matches: 179, Mismatches: 7, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
90 41 0.23
92 4 0.02
93 38 0.21
94 96 0.54
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (93 bp):
TTACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAATAAAT
Found at i:8583451 original size:33 final size:33
Alignment explanation
Indices: 8583403--8583483 Score: 126
Period size: 33 Copynumber: 2.5 Consensus size: 33
8583393 AAAATCGCAA
**
8583403 TGCGATTTTGGTTTCGCGTTGCGATTATCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
* *
8583436 TGCGATTTTCATTTCGCGTTGTGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
8583469 TGCGATTTTCATTTC
1 TGCGATTTTCATTTC
8583484 TCTCGTTGCG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.10, C:0.20, G:0.22, T:0.48
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
Found at i:8583513 original size:20 final size:20
Alignment explanation
Indices: 8583488--8583535 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
8583478 CATTTCTCTC
8583488 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
8583508 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
8583528 GTTGCGAT
1 GTTGCGAT
8583536 TTTAAGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.15, C:0.15, G:0.27, T:0.44
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:8584123 original size:20 final size:20
Alignment explanation
Indices: 8584100--8584189 Score: 135
Period size: 20 Copynumber: 4.5 Consensus size: 20
8584090 TTACTAATTT
8584100 GCATTGCGATTTACGTATTC
1 GCATTGCGATTTACGTATTC
* *
8584120 GCATTGCGATTTTCCTAATTC
1 GCATTGCGATTTACGT-ATTC
*
8584141 GCATTGCGATTTACGTAATC
1 GCATTGCGATTTACGTATTC
*
8584161 GCGTTGCGATTTACGTATTC
1 GCATTGCGATTTACGTATTC
8584181 GCATTGCGA
1 GCATTGCGA
8584190 ATTAGGAAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
20 43 0.70
21 18 0.30
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (20 bp):
GCATTGCGATTTACGTATTC
Found at i:8584138 original size:41 final size:41
Alignment explanation
Indices: 8584075--8584189 Score: 151
Period size: 41 Copynumber: 2.8 Consensus size: 41
8584065 GCGCTATGTA
** * *
8584075 AATCGCATTGATATTTTACTAATTTGCATTGCGATTTACGT
1 AATCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGT
*
8584116 ATTCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGT
1 AATCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGT
* * *
8584157 AATCGCGTTGCGATTTACGT-ATTCGCATTGCGA
1 AATCGCATTGCGATTTTCCTAATTCGCATTGCGA
8584190 ATTAGGAAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 13 0.20
41 52 0.80
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (41 bp):
AATCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGT
Found at i:8584202 original size:41 final size:41
Alignment explanation
Indices: 8584074--8584210 Score: 125
Period size: 41 Copynumber: 3.3 Consensus size: 41
8584064 GGCGCTATGT
** * *
8584074 AAATCGCATTGATATTTTA-CTAATTTGCATTGCGATTTACG
1 AAATCGCATTGCGA-TTTACCTAATTCGCATTGCGAATTACG
* * * *
8584115 TATTCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACG
1 AAATCGCATTGCGATTTACCTAATTCGCATTGCGAATTACG
* * * *
8584156 TAATCGCGTTGCGATTTACGT-ATTCGCATTGCGAATTAGG
1 AAATCGCATTGCGATTTACCTAATTCGCATTGCGAATTACG
*
8584196 AAAATCGCAATGCGA
1 -AAATCGCATTGCGA
8584211 ATTTGGGAAA
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
40 20 0.25
41 59 0.75
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (41 bp):
AAATCGCATTGCGATTTACCTAATTCGCATTGCGAATTACG
Found at i:8584209 original size:21 final size:21
Alignment explanation
Indices: 8584179--8584231 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
8584169 ATTTACGTAT
*
8584179 TCGCATTGCGAATTAGGAAAA
1 TCGCAATGCGAATTAGGAAAA
* *
8584200 TCGCAATGCGAATTTGGGAAA
1 TCGCAATGCGAATTAGGAAAA
8584221 TCGCAATGCGA
1 TCGCAATGCGA
8584232 TAGTCAGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTAGGAAAA
Found at i:8585038 original size:16 final size:16
Alignment explanation
Indices: 8585017--8585089 Score: 51
Period size: 16 Copynumber: 4.4 Consensus size: 16
8585007 AATAATTTTT
8585017 AAAAAAATAAATAATA
1 AAAAAAATAAATAATA
*
8585033 AAAAAAATTAAA-ATTTA
1 AAAAAAA-TAAATA-ATA
**
8585050 AAGTAAATAAATAA-A
1 AAAAAAATAAATAATA
*
8585065 CAAATAAATAAATAAATA
1 -AAAAAAATAAAT-AATA
*
8585083 ATAAAAA
1 AAAAAAA
8585090 GAGTGAAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 11
0.71 0.11 0.18
Matches are distributed among these distances:
15 1 0.02
16 23 0.52
17 19 0.43
18 1 0.02
ACGTcount: A:0.75, C:0.01, G:0.01, T:0.22
Consensus pattern (16 bp):
AAAAAAATAAATAATA
Found at i:8585062 original size:4 final size:4
Alignment explanation
Indices: 8585048--8585087 Score: 55
Period size: 4 Copynumber: 10.0 Consensus size: 4
8585038 AATTAAAATT
*
8585048 TAAA GTAAA TAAA TAAA CAAA TAAA TAAA TAAA T-AA TAAA
1 TAAA -TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
8585088 AAGAGTGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
3 3 0.09
4 25 0.78
5 4 0.12
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:8585137 original size:24 final size:25
Alignment explanation
Indices: 8585110--8585156 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
8585100 ATGTTAATTT
*
8585110 TTAAAATGAAGAA-AAAAAGAAATG
1 TTAAAATAAAGAACAAAAAGAAATG
* *
8585134 TTAAATTAAATAACAAAAAGAAA
1 TTAAAATAAAGAACAAAAAGAAA
8585157 GTAGAAAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.68, C:0.02, G:0.11, T:0.19
Consensus pattern (25 bp):
TTAAAATAAAGAACAAAAAGAAATG
Found at i:8586253 original size:18 final size:18
Alignment explanation
Indices: 8586227--8586265 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
8586217 GATCTAAACG
*
8586227 AAAAAAATAAATAATAAT
1 AAAAAAATAAATAAAAAT
*
8586245 AAAAGAATAAATAAAAAT
1 AAAAAAATAAATAAAAAT
8586263 AAA
1 AAA
8586266 TAATATTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (18 bp):
AAAAAAATAAATAAAAAT
Found at i:8586511 original size:41 final size:41
Alignment explanation
Indices: 8586466--8586688 Score: 279
Period size: 41 Copynumber: 5.4 Consensus size: 41
8586456 TAACAGAGTA
* * * *
8586466 GTACTTTAGTGGCGTTTCTAGACAAACGTCGCTATAGACTT
1 GTACTTTAGTGGCGTTTTTATACAAACGCCGCTATACACTT
* * *
8586507 GTACTTTAGTGGCATTTTTATACAAACACC-CTATACAATT
1 GTACTTTAGTGGCGTTTTTATACAAACGCCGCTATACACTT
* * * *
8586547 GTACTTTAGTGGCGTTTTTGTTTATAAACGCCG-TAAAAGACTT
1 GTACTTTAGTGGCG-TTTT-TATACAAACGCCGCT-ATACACTT
*
8586590 GTACTTTAGTGGCGTTTTTATACAAACACCGCTATACACTT
1 GTACTTTAGTGGCGTTTTTATACAAACGCCGCTATACACTT
* *
8586631 GTACTTTAGTGGCGTTTTTATACAAACGCTGCTATACACTA
1 GTACTTTAGTGGCGTTTTTATACAAACGCCGCTATACACTT
8586672 GTACTTTAGTGGCGTTT
1 GTACTTTAGTGGCGTTT
8586689 GTATTTATAG
Statistics
Matches: 155, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
40 21 0.14
41 100 0.65
42 15 0.10
43 19 0.12
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (41 bp):
GTACTTTAGTGGCGTTTTTATACAAACGCCGCTATACACTT
Found at i:8586576 original size:83 final size:81
Alignment explanation
Indices: 8586466--8586684 Score: 289
Period size: 83 Copynumber: 2.7 Consensus size: 81
8586456 TAACAGAGTA
* *
8586466 GTACTTTAGTGGCGTTTCTAGACAAACGTCGCTATAGACTTGTACTTTAGTGGCATTTTTATACA
1 GTACTTTAGTGGCGTTTTTATACAAACG-CGCTATAGACTTGTACTTTAGTGGCATTTTTATACA
8586531 AACACC-CTATACAATT
65 AACACCGCTATACAATT
* * * *
8586547 GTACTTTAGTGGCGTTTTTGTTTATAAACGC-CGTAAAAGACTTGTACTTTAGTGGCGTTTTTAT
1 GTACTTTAGTGGCG-TTTT-TATACAAACGCGC-T-ATAGACTTGTACTTTAGTGGCATTTTTAT
*
8586611 ACAAACACCGCTATACACTT
62 ACAAACACCGCTATACAATT
* *
8586631 GTACTTTAGTGGCGTTTTTATACAAACGCTGCTATACACTAGTACTTTAGTGGC
1 GTACTTTAGTGGCGTTTTTATACAAACGC-GCTATAGACTTGTACTTTAGTGGC
8586685 GTTTGTATTT
Statistics
Matches: 119, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
81 15 0.13
82 32 0.27
83 48 0.40
84 24 0.20
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (81 bp):
GTACTTTAGTGGCGTTTTTATACAAACGCGCTATAGACTTGTACTTTAGTGGCATTTTTATACAA
ACACCGCTATACAATT
Found at i:8586598 original size:124 final size:125
Alignment explanation
Indices: 8586446--8586708 Score: 375
Period size: 124 Copynumber: 2.1 Consensus size: 125
8586436 CATTTTTTCA
* * ** *
8586446 ATAAACGCCGTAACAGAGTAGTACTTTAGTGGCGTTTCTAGACAAACGTCGCTATAGACTTGTAC
1 ATAAACGCCGTAAAAGACTAGTACTTTAGTGGCGTTTCTAGACAAACACCGCTATACACTTGTAC
* * *
8586511 TTTAGTGGCATTTTTATACAAACAC-CCTATACAATTGTACTTTAGTGGCGTTTTTGTTT
66 TTTAGTGGCATTTTTATACAAACACTCCTATACAATAGTACTTTAGTGGCGTTTGTATTT
* * *
8586570 ATAAACGCCGTAAAAGACTTGTACTTTAGTGGCGTTTTTATACAAACACCGCTATACACTTGTAC
1 ATAAACGCCGTAAAAGACTAGTACTTTAGTGGCGTTTCTAGACAAACACCGCTATACACTTGTAC
* * * *
8586635 TTTAGTGGCGTTTTTATACAAACGCTGCTATACACTAGTACTTTAGTGGCGTTTGTATTT
66 TTTAGTGGCATTTTTATACAAACACTCCTATACAATAGTACTTTAGTGGCGTTTGTATTT
*
8586695 ATAGACGCCGTAAA
1 ATAAACGCCGTAAA
8586709 TTTATAAGTC
Statistics
Matches: 122, Mismatches: 16, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
124 80 0.66
125 42 0.34
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (125 bp):
ATAAACGCCGTAAAAGACTAGTACTTTAGTGGCGTTTCTAGACAAACACCGCTATACACTTGTAC
TTTAGTGGCATTTTTATACAAACACTCCTATACAATAGTACTTTAGTGGCGTTTGTATTT
Found at i:8589648 original size:20 final size:20
Alignment explanation
Indices: 8589623--8589678 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
8589613 AGTTTGTTTG
8589623 GAATTTTATCAATTTTAAAT
1 GAATTTTATCAATTTTAAAT
* *
8589643 GAATTTCATCATTTTTAAAT
1 GAATTTTATCAATTTTAAAT
*
8589663 GAATTTTCTC-ATTTTA
1 GAATTTTATCAATTTTA
8589679 GCTTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 5 0.16
20 26 0.84
ACGTcount: A:0.34, C:0.09, G:0.05, T:0.52
Consensus pattern (20 bp):
GAATTTTATCAATTTTAAAT
Found at i:8590263 original size:43 final size:42
Alignment explanation
Indices: 8590192--8590541 Score: 298
Period size: 43 Copynumber: 8.2 Consensus size: 42
8590182 TGCATATTTG
* *
8590192 GCGGCGTTTGTTCTAAAAATGCCACTATAGAATTGACCTTTT
1 GCGGCGTTTGTTCTAAAAACGCCGCTATAGAATTGACCTTTT
* * * *
8590234 ACGGTGTTTTGTTCTAAAAACACCGCTATAG-ATCTGACATTTT
1 GCGGCG-TTTGTTCTAAAAACGCCGCTATAGAAT-TGACCTTTT
* * * *
8590277 GCGGCGTTTGTTATGAAAATGCCGCTATAGATTATGACCTTTT
1 GCGGCGTTTGTTCTAAAAACGCCGCTATAGAAT-TGACCTTTT
* * **
8590320 GTGGCATTTGTATCT-AAAACGCCGCTATAGAA-CAACCTTTT
1 GCGGCGTTTGT-TCTAAAAACGCCGCTATAGAATTGACCTTTT
* **
8590361 GTGGCGTTTTGTTCTAAAAACGCCGCTATAG-ATCTGATATTTT
1 GCGGCG-TTTGTTCTAAAAACGCCGCTATAGAAT-TGACCTTTT
* * * *
8590404 GCGGCGTTTGTTCTGAAAACGCCACTATATATATCGA-CTTTT
1 GCGGCGTTTGTTCTAAAAACGCCGCTATAGA-ATTGACCTTTT
* *
8590446 AGCGGCGTTTGTTCCT-AAAACGCCGCTATAGATATCGACCTTTA
1 -GCGGCGTTTGTT-CTAAAAACGCCGCTATAGA-ATTGACCTTTT
* * * * *
8590490 GCGGCGTTTGTTCCAAAAGCGCCGCAATAGATCTTGACCTATT
1 GCGGCGTTTGTTCTAAAAACGCCGCTATAGA-ATTGACCTTTT
*
8590533 GCGGTGTTT
1 GCGGCGTTT
8590542 ATTGTTCTCA
Statistics
Matches: 250, Mismatches: 44, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
41 16 0.06
42 72 0.29
43 152 0.61
44 10 0.04
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.35
Consensus pattern (42 bp):
GCGGCGTTTGTTCTAAAAACGCCGCTATAGAATTGACCTTTT
Found at i:8590339 original size:85 final size:84
Alignment explanation
Indices: 8590187--8590541 Score: 324
Period size: 85 Copynumber: 4.2 Consensus size: 84
8590177 CATAGTGCAT
* * * * *
8590187 ATTTGGCGGCGTTTGTTCTAAAAATGCCACTATAGA-ATTGACCTTTTACGGTGTTTTGTTCTAA
1 ATTTTGCGGCGTTTGTTCTAAAAACGCCGCTATAGATA-TGACCTTTTGCGGCG-TTTGTTCTAA
*
8590251 AAACACCGCTATAGATCTGAC
64 AAACGCCGCTATAGATCTGAC
* * * * *
8590272 ATTTTGCGGCGTTTGTTATGAAAATGCCGCTATAGATTATGACCTTTTGTGGCATTTGTATCT-A
1 ATTTTGCGGCGTTTGTTCTAAAAACGCCGCTATAGA-TATGACCTTTTGCGGCGTTTGT-TCTAA
* *
8590336 AAACGCCGCTATAGAAC-AAC
64 AAACGCCGCTATAGATCTGAC
* * * ** *
8590356 CTTTTGTGGCGTTTTGTTCTAAAAACGCCGCTATAGATCTGATATTTTGCGGCGTTTGTTCTGAA
1 ATTTTGCGGCG-TTTGTTCTAAAAACGCCGCTATAGATATGACCTTTTGCGGCGTTTGTTCTAAA
* * *
8590421 AACGCCACTATATATATCGAC
65 AACGCCGCTATAGATCT-GAC
* *
8590442 -TTTTAGCGGCGTTTGTTCCT-AAAACGCCGCTATAGATATCGACCTTTAGCGGCGTTTGTTCCA
1 ATTTT-GCGGCGTTTGTT-CTAAAAACGCCGCTATAGATAT-GACCTTTTGCGGCGTTTGTTCTA
* *
8590505 AAAGCGCCGCAATAGATCTTGAC
63 AAAACGCCGCTATAGATC-TGAC
* * *
8590528 CTATTGCGGTGTTT
1 ATTTTGCGGCGTTT
8590542 ATTGTTCTCA
Statistics
Matches: 218, Mismatches: 40, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
83 3 0.01
84 42 0.19
85 103 0.47
86 65 0.30
87 5 0.02
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.35
Consensus pattern (84 bp):
ATTTTGCGGCGTTTGTTCTAAAAACGCCGCTATAGATATGACCTTTTGCGGCGTTTGTTCTAAAA
ACGCCGCTATAGATCTGAC
Found at i:8590457 original size:127 final size:127
Alignment explanation
Indices: 8590192--8590541 Score: 411
Period size: 127 Copynumber: 2.7 Consensus size: 127
8590182 TGCATATTTG
* * * * * *
8590192 GCGGCGTTTGTTCTAAAAATGCCACTATAGAATTGACCTTTTACGGTGTTTTGTTCTAAAAACAC
1 GCGGCGTTTGTTCT-AAAACGCCGCTATAGAATCGACCTTTTGCGGCGTTTTGTTCTAAAAACGC
* *
8590257 CGCTATAGATCTGACATTTTGCGGCGTTTGTTATGAAAATGCCGCTATAGATTATGACCTTTT
65 CGCTATAGATCTGACATTTTGCGGCGTTTGTTATGAAAACGCCACTATAGATTATGACCTTTT
* * * *
8590320 GTGGCATTTGTATCTAAAACGCCGCTATAGAA-CAACCTTTTGTGGCGTTTTGTTCTAAAAACGC
1 GCGGCGTTTGT-TCTAAAACGCCGCTATAGAATCGACCTTTTGCGGCGTTTTGTTCTAAAAACGC
* * *
8590384 CGCTATAGATCTGATATTTTGCGGCGTTTGTTCTGAAAACGCCACTATATA-TATCGA-CTTTT
65 CGCTATAGATCTGACATTTTGCGGCGTTTGTTATGAAAACGCCACTATAGATTAT-GACCTTTT
* * *
8590446 AGCGGCGTTTGTTCCTAAAACGCCGCTATAGATATCGACCTTTAGCGGCG-TTTGTTCCAAAAGC
1 -GCGGCGTTTGTT-CTAAAACGCCGCTATAGA-ATCGACCTTTTGCGGCGTTTTGTTCTAAAAAC
* * * *
8590510 GCCGCAATAGATCTTGACCTATTGCGGTGTTT
63 GCCGCTATAGATC-TGACATTTTGCGGCGTTT
8590542 ATTGTTCTCA
Statistics
Matches: 188, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
126 9 0.05
127 101 0.54
128 49 0.26
129 29 0.15
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.35
Consensus pattern (127 bp):
GCGGCGTTTGTTCTAAAACGCCGCTATAGAATCGACCTTTTGCGGCGTTTTGTTCTAAAAACGCC
GCTATAGATCTGACATTTTGCGGCGTTTGTTATGAAAACGCCACTATAGATTATGACCTTTT
Found at i:8590748 original size:38 final size:36
Alignment explanation
Indices: 8590706--8591111 Score: 301
Period size: 38 Copynumber: 10.8 Consensus size: 36
8590696 ATAATATATA
*
8590706 AAAAATCATTTTTAAAACTATATATTATATATGCTTTT-
1 AAAAAT-ATTTTAAAAACTATATATTATATAT--TTTTC
* *
8590744 AAAAATTGTTTTCAAAACCATATAATATATATATATATATTTTC
1 AAAAA-TATTTT-AAAA--A-CT-ATATAT-TATATAT-TTTTC
* *
8590788 AAAAAT-TGTTTTAAAACTATATAATATATA-TTTTC
1 AAAAATAT-TTTAAAAACTATATATTATATATTTTTC
* *
8590823 AAAAATATTTTTAAAACTATATATTATATACATTTTC
1 AAAAATATTTTAAAAACTATATATTATATA-TTTTTC
* *
8590860 AAAAATGTTTTCAAAAACTATATATTATATA-TATTC
1 AAAAATATTTT-AAAAACTATATATTATATATTTTTC
*
8590896 -AAAATGTTTTCAAAAACTATATATTATATATATTTTC
1 AAAAATATTTT-AAAAACTATATATTATATAT-TTTTC
*
8590933 AAAAATGTTTTCAAAAACTATATATTATATATATGTTTC
1 AAAAATATTTT-AAAAACTATATATTATATAT-T-TTTC
* * * *
8590972 CAAAA-ATTTTCAAAACTATATAATAAATATATTTTC
1 AAAAATATTTTAAAAACTATATATTATATAT-TTTTC
** * *
8591008 GAAAACCATTTTCAAAACTATATAATATATA-TTTTC
1 -AAAAATATTTTAAAAACTATATATTATATATTTTTC
* *
8591044 AAAAATCGATTTT--AAAGTATATATTATAT-GTTTTC
1 AAAAAT--ATTTTAAAAACTATATATTATATATTTTTC
* *
8591079 AAAAATCGTTCTATAAAAACTATATAATATATA
1 AAAAAT-ATT-T-TAAAAACTATATATTATATA
8591112 AACCCCGGAC
Statistics
Matches: 313, Mismatches: 28, Indels: 53
0.79 0.07 0.13
Matches are distributed among these distances:
34 2 0.01
35 92 0.29
36 15 0.05
37 52 0.17
38 106 0.34
39 13 0.04
40 1 0.00
41 1 0.00
42 5 0.02
43 14 0.04
44 12 0.04
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.43
Consensus pattern (36 bp):
AAAAATATTTTAAAAACTATATATTATATATTTTTC
Found at i:8590792 original size:44 final size:43
Alignment explanation
Indices: 8590724--8590819 Score: 140
Period size: 43 Copynumber: 2.2 Consensus size: 43
8590714 TTTTTAAAAC
*
8590724 TATATATTATATATGCTTTTAAAAATTGTTTTCAAAACCATATAA
1 TATATATTATATAT-CTTTCAAAAATTGTTTT-AAAACCATATAA
*
8590769 TATATATATATATAT-TTTCAAAAATTGTTTTAAAACTATATAA
1 TATATAT-TATATATCTTTCAAAAATTGTTTTAAAACCATATAA
8590812 TATATATT
1 TATATATT
8590820 TTCAAAAATA
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
42 1 0.02
43 18 0.38
44 15 0.31
45 7 0.15
46 7 0.15
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (43 bp):
TATATATTATATATCTTTCAAAAATTGTTTTAAAACCATATAA
Found at i:8590819 original size:35 final size:35
Alignment explanation
Indices: 8590769--8591111 Score: 338
Period size: 35 Copynumber: 9.4 Consensus size: 35
8590759 AACCATATAA
8590769 TATATATATATATATTTTCAAAAATTGTTTT-AAAAC
1 TATATA-ATATATATTTTCAAAAA-TGTTTTAAAAAC
* *
8590805 TATATAATATATATTTTCAAAAATATTTTTAAAAC
1 TATATAATATATATTTTCAAAAATGTTTTAAAAAC
*
8590840 TATATATTATATACATTTTCAAAAATGTTTTCAAAAAC
1 TATATA--ATATATATTTTCAAAAATGTTTT-AAAAAC
* *
8590878 TATATATTATATATATTC-AAAATGTTTTCAAAAAC
1 TATATAATATATATTTTCAAAAATGTTTT-AAAAAC
8590913 TATATATTATATATATTTTCAAAAATGTTTTCAAAAAC
1 TATATA--ATATATATTTTCAAAAATGTTTT-AAAAAC
*
8590951 TATATATTATATATATGTTTCCAAAAA--TTTTCAAAAC
1 TATATA--ATATATAT-TTT-CAAAAATGTTTTAAAAAC
*** *
8590988 TATATAATAAATATATTTTCGAAAACCATTTTCAAAAC
1 TATATAAT--ATATATTTTC-AAAAATGTTTTAAAAAC
*
8591026 TATATAATATATATTTTCAAAAATCGATTTT--AAAG
1 TATATAATATATATTTTCAAAAAT-G-TTTTAAAAAC
* *
8591061 TATATATTATATGTTTTCAAAAATCGTTCTATAAAAAC
1 TATATAATATATATTTTCAAAAAT-GTT-T-TAAAAAC
8591099 TATATAATATATA
1 TATATAATATATA
8591112 AACCCCGGAC
Statistics
Matches: 267, Mismatches: 20, Indels: 38
0.82 0.06 0.12
Matches are distributed among these distances:
34 7 0.03
35 86 0.32
36 33 0.12
37 52 0.19
38 80 0.30
39 3 0.01
40 6 0.02
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.43
Consensus pattern (35 bp):
TATATAATATATATTTTCAAAAATGTTTTAAAAAC
Found at i:8590889 original size:73 final size:73
Alignment explanation
Indices: 8590768--8591111 Score: 384
Period size: 73 Copynumber: 4.7 Consensus size: 73
8590758 AAACCATATA
8590768 ATATATATATATATATTTTCAAAAATTGTTTT--AAAACTATATAATATATATTTTCAAAAATAT
1 ATATAT-TATATATATTTTCAAAAA-TGTTTTCAAAAACTATATAATATATATTTTCAAAAATAT
8590831 TTTTAAAACT
64 TTTTAAAACT
* * * *
8590841 ATATATTATATACATTTTCAAAAATGTTTTCAAAAACTATATATTATATATATTC-AAAATGTTT
1 ATATATTATATATATTTTCAAAAATGTTTTCAAAAACTATATAATATATATTTTCAAAAATATTT
*
8590905 TCAAAAACT
66 T-TAAAACT
*
8590914 ATATATTATATATATTTTCAAAAATGTTTTCAAAAACTATATATTATATATATGTTTCCAAAA-A
1 ATATATTATATATATTTTCAAAAATGTTTTCAAAAACTATATA--ATATATAT-TTTCAAAAATA
*
8590978 TTTTCAAAACT
63 TTTTTAAAACT
* * ***
8590989 ATATAATAAATATATTTTCGAAAACCATTTTC-AAAACTATATAATATATATTTTCAAAAATCGA
1 ATATATTATATATATTTTC-AAAAATGTTTTCAAAAACTATATAATATATATTTTCAAAAAT--A
*
8591053 -TTTT-AAAGT
63 TTTTTAAAACT
*
8591062 ATATA-T-TATATGTTTTCAAAAATCGTTCTAT-AAAAACTATATAATATATA
1 ATATATTATATATATTTTCAAAAAT-GTT-T-TCAAAAACTATATAATATATA
8591112 AACCCCGGAC
Statistics
Matches: 233, Mismatches: 23, Indels: 30
0.81 0.08 0.10
Matches are distributed among these distances:
70 4 0.02
71 17 0.07
72 36 0.15
73 111 0.48
74 3 0.01
75 42 0.18
76 16 0.07
77 4 0.02
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.43
Consensus pattern (73 bp):
ATATATTATATATATTTTCAAAAATGTTTTCAAAAACTATATAATATATATTTTCAAAAATATTT
TTAAAACT
Found at i:8599059 original size:25 final size:25
Alignment explanation
Indices: 8599031--8599082 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
8599021 AAGGGACTGA
* *
8599031 AGATGAAAGGAGTGTGTTGTGTAAG
1 AGATGAAAGGAGTGTGCTATGTAAG
8599056 AGATGAAAGGAGTGTGCTATGTAAG
1 AGATGAAAGGAGTGTGCTATGTAAG
8599081 AG
1 AG
8599083 GTTGAAGATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.38, T:0.25
Consensus pattern (25 bp):
AGATGAAAGGAGTGTGCTATGTAAG
Found at i:8600626 original size:16 final size:16
Alignment explanation
Indices: 8600605--8600637 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8600595 CACCAACCCA
8600605 TCTATTCATCTCTGTT
1 TCTATTCATCTCTGTT
8600621 TCTATTCATCTCTGTT
1 TCTATTCATCTCTGTT
8600637 T
1 T
8600638 AAGGCCATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.58
Consensus pattern (16 bp):
TCTATTCATCTCTGTT
Found at i:8603642 original size:16 final size:16
Alignment explanation
Indices: 8603621--8603653 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8603611 TAATAAATAA
*
8603621 ACGAACATAAACGAAC
1 ACGAACATAAACAAAC
8603637 ACGAACATAAACAAAC
1 ACGAACATAAACAAAC
8603653 A
1 A
8603654 AACAAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.61, C:0.24, G:0.09, T:0.06
Consensus pattern (16 bp):
ACGAACATAAACAAAC
Found at i:8603741 original size:16 final size:16
Alignment explanation
Indices: 8603720--8603774 Score: 101
Period size: 16 Copynumber: 3.4 Consensus size: 16
8603710 CATTTAATAA
8603720 ATAAACGAACACGAAC
1 ATAAACGAACACGAAC
8603736 ATAAACGAACACGAAC
1 ATAAACGAACACGAAC
*
8603752 ATAAATGAACACGAAC
1 ATAAACGAACACGAAC
8603768 ATAAACG
1 ATAAACG
8603775 TTGGAGACCC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.56, C:0.22, G:0.13, T:0.09
Consensus pattern (16 bp):
ATAAACGAACACGAAC
Found at i:8604868 original size:14 final size:14
Alignment explanation
Indices: 8604851--8604905 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
8604841 GATTGGGTTA
*
8604851 AACATAAATGAACG
1 AACATAAACGAACG
8604865 AACATAAACGAAC-
1 AACATAAACGAACG
*
8604878 AAGCATAACCGAACG
1 AA-CATAAACGAACG
* *
8604893 AGCATAAATGAAC
1 AACATAAACGAAC
8604906 ATAACCGAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
13 2 0.06
14 31 0.91
15 1 0.03
ACGTcount: A:0.55, C:0.20, G:0.15, T:0.11
Consensus pattern (14 bp):
AACATAAACGAACG
Found at i:8607111 original size:21 final size:19
Alignment explanation
Indices: 8607087--8607125 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
8607077 ATAATTACTA
8607087 AAATAAAATATTAAATATTTT
1 AAATAAAAT-TTAAA-ATTTT
8607108 AAATAAAATTTAAAATTT
1 AAATAAAATTTAAAATTT
8607126 GAATTGTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 5 0.28
21 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
AAATAAAATTTAAAATTTT
Found at i:8607415 original size:6 final size:6
Alignment explanation
Indices: 8607404--8607442 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
8607394 ATAGTACGTG
8607404 AGATTC AGATTC AGATTC AGA--C AGATTC AGATTC AGATT
1 AGATTC AGATTC AGATTC AGATTC AGATTC AGATTC AGATT
8607443 TGGGAGTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 4 0.13
6 27 0.87
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (6 bp):
AGATTC
Found at i:8607430 original size:16 final size:16
Alignment explanation
Indices: 8607409--8607440 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8607399 ACGTGAGATT
8607409 CAGATTCAGATTCAGA
1 CAGATTCAGATTCAGA
8607425 CAGATTCAGATTCAGA
1 CAGATTCAGATTCAGA
8607441 TTTGGGAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.25
Consensus pattern (16 bp):
CAGATTCAGATTCAGA
Found at i:8607911 original size:28 final size:28
Alignment explanation
Indices: 8607871--8607934 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 28
8607861 ATTATTTATA
* * *
8607871 TTTTAAAATTAAATAATTTCT-TAATTT
1 TTTTAAAATTAAATAAGTCCTCAAATTT
8607898 TTTTAAAATTTAAATAAGTCCTCAAATTT
1 TTTTAAAA-TTAAATAAGTCCTCAAATTT
8607927 TTTTAAAA
1 TTTTAAAA
8607935 AAATCAATGC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 8 0.25
28 11 0.34
29 13 0.41
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (28 bp):
TTTTAAAATTAAATAAGTCCTCAAATTT
Found at i:8608923 original size:81 final size:81
Alignment explanation
Indices: 8608788--8608950 Score: 317
Period size: 81 Copynumber: 2.0 Consensus size: 81
8608778 TCAATGTGCT
8608788 TTATAAAACCCTTATCAATTTTCAATCTAGGTTCGTACGTGCTCATCGATCTTAATTTTCAATTT
1 TTATAAAACCCTTATCAATTTTCAATCTAGGTTCGTACGTGCTCATCGATCTTAATTTTCAATTT
8608853 TGTTTTGCCACTCTTA
66 TGTTTTGCCACTCTTA
*
8608869 TTATAAAACCCTTATCAATTTTCAATCTAGGTTTGTACGTGCTCATCGATCTTAATTTTCAATTT
1 TTATAAAACCCTTATCAATTTTCAATCTAGGTTCGTACGTGCTCATCGATCTTAATTTTCAATTT
8608934 TGTTTTGCCACTCTTA
66 TGTTTTGCCACTCTTA
8608950 T
1 T
8608951 AAAGCCTCAA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.25, C:0.20, G:0.10, T:0.45
Consensus pattern (81 bp):
TTATAAAACCCTTATCAATTTTCAATCTAGGTTCGTACGTGCTCATCGATCTTAATTTTCAATTT
TGTTTTGCCACTCTTA
Found at i:8619782 original size:20 final size:20
Alignment explanation
Indices: 8619776--8619864 Score: 75
Period size: 20 Copynumber: 4.7 Consensus size: 20
8619766 AAATTATATT
8619776 ATAATAAATAAATATAATAA
1 ATAATAAATAAATATAATAA
8619796 ATAATAAAT--A-ATAAT-A
1 ATAATAAATAAATATAATAA
* * *
8619812 TTAATTATTAAATATAATAA
1 ATAATAAATAAATATAATAA
*
8619832 ATAAT-TA-AAATATAAT-A
1 ATAATAAATAAATATAATAA
8619849 ATATATAAATATAATA
1 ATA-ATAAATA-AATA
8619865 ATTAAAATAG
Statistics
Matches: 54, Mismatches: 7, Indels: 15
0.71 0.09 0.20
Matches are distributed among these distances:
16 7 0.13
17 9 0.17
18 13 0.24
19 6 0.11
20 15 0.28
21 4 0.07
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
ATAATAAATAAATATAATAA
Found at i:8619791 original size:13 final size:13
Alignment explanation
Indices: 8619775--8619864 Score: 75
Period size: 13 Copynumber: 7.2 Consensus size: 13
8619765 AAAATTATAT
8619775 TATAATAAATAAA
1 TATAATAAATAAA
8619788 TATAATAAAT-AA
1 TATAATAAATAAA
8619800 TA-AAT-AAT-AA
1 TATAATAAATAAA
* *
8619810 TATTAATTATTAAA
1 TA-TAATAAATAAA
*
8619824 TATAATAAATAAT
1 TATAATAAATAAA
*
8619837 TAAAATATAAT-AA
1 TATAATA-AATAAA
8619850 TAT-ATAAATATAA
1 TATAATAAATA-AA
8619863 TA
1 TA
8619865 ATTAAAATAG
Statistics
Matches: 63, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
10 7 0.11
11 6 0.10
12 10 0.16
13 33 0.52
14 7 0.11
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
TATAATAAATAAA
Found at i:8619860 original size:16 final size:16
Alignment explanation
Indices: 8619771--8619866 Score: 79
Period size: 16 Copynumber: 5.6 Consensus size: 16
8619761 AAATAAAATT
* *
8619771 ATATTATAATAAATAA
1 ATATAATAATATATAA
8619787 ATATAATAA-ATAATAA
1 ATATAATAATAT-ATAA
*
8619803 ATAATAATATTAATTATTAA
1 AT-ATAATAAT-A-TA-TAA
8619823 ATATAATAA-ATAATTAAA
1 ATATAATAATAT-A-T-AA
8619841 ATATAATAATATATAA
1 ATATAATAATATATAA
8619857 ATATAATAAT
1 ATATAATAAT
8619867 TAAAATAGAT
Statistics
Matches: 67, Mismatches: 4, Indels: 18
0.75 0.04 0.20
Matches are distributed among these distances:
15 1 0.01
16 27 0.40
17 11 0.16
18 12 0.18
19 10 0.15
20 6 0.09
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAATAATATATAA
Found at i:8619886 original size:29 final size:30
Alignment explanation
Indices: 8619775--8619873 Score: 99
Period size: 30 Copynumber: 3.5 Consensus size: 30
8619765 AAAATTATAT
*
8619775 TATAATAAAT-AAATATAATAA-ATAATAAA
1 TATAATAATTAAAATATAATAATAT-ATAAA
*
8619804 TAATAAT-ATT--AAT-TATTAA-ATAT-AA
1 T-ATAATAATTAAAATATAATAATATATAAA
8619829 TA-AATAATTAAAATATAATAATATATAAA
1 TATAATAATTAAAATATAATAATATATAAA
8619858 TATAATAATTAAAATA
1 TATAATAATTAAAATA
8619874 GATATTTTAT
Statistics
Matches: 59, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
23 3 0.05
24 4 0.07
25 3 0.05
26 5 0.08
27 12 0.20
28 7 0.12
29 7 0.12
30 18 0.31
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (30 bp):
TATAATAATTAAAATATAATAATATATAAA
Found at i:8619890 original size:26 final size:28
Alignment explanation
Indices: 8619789--8619898 Score: 84
Period size: 29 Copynumber: 3.9 Consensus size: 28
8619779 ATAAATAAAT
* *
8619789 ATAATAAATAATAAATAA-TAATAT-TA
1 ATAATATATAATAAATAATTAAAATATA
*
8619815 ATTATTAAATATAATAAATAATTAAAATATA
1 A-TA--ATATATAATAAATAATTAAAATATA
*
8619846 ATAATATATAAATATAATAATTAAAATA-G
1 ATAATATAT-AATA-AATAATTAAAATATA
* * *
8619875 ATATTTTATAA-AAATAATCAAAAT
1 ATAATATATAATAAATAATTAAAAT
8619899 TTGAATTTGA
Statistics
Matches: 69, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
26 12 0.17
27 3 0.04
28 7 0.10
29 24 0.35
30 20 0.29
31 3 0.04
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (28 bp):
ATAATATATAATAAATAATTAAAATATA
Found at i:8622368 original size:64 final size:64
Alignment explanation
Indices: 8622246--8622368 Score: 142
Period size: 64 Copynumber: 1.9 Consensus size: 64
8622236 AACTGAAATA
* *** * *
8622246 TTTGTACTAAACTATTTTATTTTGAGTTAATGAATATTTTATGTTATGCGAACTATTTTATTAT
1 TTTGTACTAAACTATTTTAATTTGAGTTAATGAATATCCGACGTTATGCGAACAATTTTATTAT
* *
8622310 TTTGTACTAAACTATTTTAATTTGAGTTAATTGACTA-CCGACGTTCAT-TGAACAATTTT
1 TTTGTACTAAACTATTTTAATTTGAGTTAA-TGAATATCCGACGTT-ATGCGAACAATTTT
8622369 TAGTTATGCG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
64 42 0.86
65 7 0.14
ACGTcount: A:0.30, C:0.10, G:0.11, T:0.49
Consensus pattern (64 bp):
TTTGTACTAAACTATTTTAATTTGAGTTAATGAATATCCGACGTTATGCGAACAATTTTATTAT
Found at i:8626659 original size:27 final size:27
Alignment explanation
Indices: 8626621--8626678 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
8626611 TTTCTGACAC
8626621 GCGCTAATAAGGCGCAGATAACCATAT
1 GCGCTAATAAGGCGCAGATAACCATAT
8626648 GCGCTAATAAGGCGCAGATAACCATAT
1 GCGCTAATAAGGCGCAGATAACCATAT
8626675 GCGC
1 GCGC
8626679 CTTTCATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.17
Consensus pattern (27 bp):
GCGCTAATAAGGCGCAGATAACCATAT
Found at i:8632097 original size:16 final size:16
Alignment explanation
Indices: 8632047--8632099 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
8632037 AATACTAAAC
*
8632047 AAATT-AAATAAATAA
1 AAATTAAAAAAAATAA
* * *
8632062 AATATTAACAATAATTA
1 AA-ATTAAAAAAAATAA
8632079 AAATTAAAAAAAATAA
1 AAATTAAAAAAAATAA
8632095 AAATT
1 AAATT
8632100 GTTATCATAT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
15 2 0.07
16 19 0.66
17 8 0.28
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (16 bp):
AAATTAAAAAAAATAA
Found at i:8632246 original size:34 final size:33
Alignment explanation
Indices: 8632166--8632250 Score: 84
Period size: 34 Copynumber: 2.5 Consensus size: 33
8632156 GCCTTCCATT
*
8632166 TTATAACTACAA-AAAATAATAAAAGTTAATATA
1 TTATAA-TACAATAAAATAATAAAAGTCAATATA
* ** *
8632199 ATATAATTTAATAAAATAATAAATTA-TCAATTTA
1 TTATAATACAATAAAATAATAAA--AGTCAATATA
8632233 TTATAATACAATAAAATA
1 TTATAATACAATAAAATA
8632251 TTTTACATTC
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
32 3 0.07
33 16 0.39
34 21 0.51
35 1 0.02
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.35
Consensus pattern (33 bp):
TTATAATACAATAAAATAATAAAAGTCAATATA
Found at i:8635706 original size:372 final size:373
Alignment explanation
Indices: 8634971--8635715 Score: 1356
Period size: 372 Copynumber: 2.0 Consensus size: 373
8634961 TTCACTCAAT
8634971 GCTTACCAAAAGGCTCCATGATTTTGAATGCCAAATTACCTCTATTATTTATAGAAGTTAGTTGG
1 GCTTACCAAAAGGCTCCATGATTTTGAATGCCAAATTACCTCTATTATTTATAGAAGTTAGTTGG
*
8635036 GATGATATTCTATGTTTCTTAGCCATGTGGGATTGTTTTTTAAAAAAAATTAAACCAAACAATAT
66 GATGATATTCTATGTTTCTTAGCCATGTGAGATTGTTTTTTAAAAAAAATTAAACCAAACAATAT
8635101 CATTTTATTATGATTTTTTAGCCCCAAATTTATTTTTTAATTATAGTTATATAATTATATTTATT
131 CATTTTATTATGATTTTTTAGCCCCAAATTTATTTTTTAATTATAGTTATATAATTATATTTATT
8635166 ATTTAATATGTTTTACCTTAAATATTATGTTGTAGTTAATTTGAATAATTTTGTTTCACTTGATT
196 ATTTAATATGTTTTACCTTAAATATTATGTTGTAGTTAATTTGAATAATTTTGTTTCACTTGATT
* *
8635231 TTATTGTTTTTAACTTATATATGTTATGACTTGCTTTGAATATGAATTGTGATATAAAAATTATT
261 TTATGGTTTTTAACTTATATATGTTATGACTTGCTTTGAATATAAATTGTGATATAAAAATTATT
*
8635296 TTTTTTTATAATATTTTTTAGTATTTATTTAATTTTTAAATAATTATG
326 TTTTATTATAATATTTTTTAGTATTTATTTAATTTTTAAATAATTATG
* *
8635344 GCTTACTAAAAGGCTCCATGATTTTGAATGTCAAATTACCTCTATTATTTATAGAAGTTAGTTGG
1 GCTTACCAAAAGGCTCCATGATTTTGAATGCCAAATTACCTCTATTATTTATAGAAGTTAGTTGG
8635409 GATGATATTCTATGTTTCTTAGCCATGTGAGATTGTTTTTT-AAAAAAATTAAACCAAACAATAT
66 GATGATATTCTATGTTTCTTAGCCATGTGAGATTGTTTTTTAAAAAAAATTAAACCAAACAATAT
8635473 CATTTTATTATGATTTTTTAGCCCCAAATTTATTTTTTAATTATAGTTATATAATTATATTTATT
131 CATTTTATTATGATTTTTTAGCCCCAAATTTATTTTTTAATTATAGTTATATAATTATATTTATT
8635538 ATTTAATATGTTTTACCTTAAATATTATGTTGTAGTTAATTTGAATAATTTTGTTTCACTTGATT
196 ATTTAATATGTTTTACCTTAAATATTATGTTGTAGTTAATTTGAATAATTTTGTTTCACTTGATT
8635603 TTATGGTTTTTAAC-T-TATAT-TTATGACTTGCTTTGAATATAAATTGTGATATAAAAAATTAT
261 TTATGGTTTTTAACTTATATATGTTATGACTTGCTTTGAATATAAATTGTGATAT-AAAAATTAT
*
8635665 TTTTTATTA-AATATTTTTTGGTATTTTTATTTAATTTTTTAAATAATTATG
325 TTTTTATTATAATATTTTTTAGTA--TTTATTTAA-TTTTTAAATAATTATG
8635716 ACGTCGTCCG
Statistics
Matches: 361, Mismatches: 7, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
369 44 0.12
370 22 0.06
371 10 0.03
372 182 0.50
373 103 0.29
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.50
Consensus pattern (373 bp):
GCTTACCAAAAGGCTCCATGATTTTGAATGCCAAATTACCTCTATTATTTATAGAAGTTAGTTGG
GATGATATTCTATGTTTCTTAGCCATGTGAGATTGTTTTTTAAAAAAAATTAAACCAAACAATAT
CATTTTATTATGATTTTTTAGCCCCAAATTTATTTTTTAATTATAGTTATATAATTATATTTATT
ATTTAATATGTTTTACCTTAAATATTATGTTGTAGTTAATTTGAATAATTTTGTTTCACTTGATT
TTATGGTTTTTAACTTATATATGTTATGACTTGCTTTGAATATAAATTGTGATATAAAAATTATT
TTTTATTATAATATTTTTTAGTATTTATTTAATTTTTAAATAATTATG
Found at i:8635845 original size:18 final size:17
Alignment explanation
Indices: 8635809--8635847 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
8635799 GCAAAAGATT
*
8635809 AAAAAAACGAAAAAGAG
1 AAAAAAACGAAAAAAAG
*
8635826 AAAAAAAGGAAAGAAAAG
1 AAAAAAACGAAA-AAAAG
8635844 AAAA
1 AAAA
8635848 TTCTTTATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (17 bp):
AAAAAAACGAAAAAAAG
Found at i:8637554 original size:31 final size:31
Alignment explanation
Indices: 8637506--8637571 Score: 75
Period size: 31 Copynumber: 2.1 Consensus size: 31
8637496 TGTAAAAGGG
8637506 GAGTGGTTATAGTTTAG-CATTAGAAAA-ACTA
1 GAGTGGTTATAGTTTAGCCATT-GAAAAGAC-A
*
8637537 GAGTGGTTCTA-TCTTAGCCATTGAAAAGACA
1 GAGTGGTTATAGT-TTAGCCATTGAAAAGACA
8637568 GAGT
1 GAGT
8637572 TGTAAGGTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
30 1 0.03
31 24 0.77
32 6 0.19
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (31 bp):
GAGTGGTTATAGTTTAGCCATTGAAAAGACA
Found at i:8640568 original size:8 final size:8
Alignment explanation
Indices: 8640555--8640594 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
8640545 GGAAAAAGAG
8640555 GAAGAAAA
1 GAAGAAAA
8640563 GAAGAAAA
1 GAAGAAAA
8640571 G-AGAAAA
1 GAAGAAAA
*
8640578 TAAGAAAA
1 GAAGAAAA
8640586 GAAAGAAAA
1 G-AAGAAAA
8640595 ACGTGTTTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 6 0.21
8 15 0.54
9 7 0.25
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.03
Consensus pattern (8 bp):
GAAGAAAA
Found at i:8640577 original size:15 final size:15
Alignment explanation
Indices: 8640557--8640587 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8640547 AAAAAGAGGA
8640557 AGAAAAGAAGAAAAG
1 AGAAAAGAAGAAAAG
*
8640572 AGAAAATAAGAAAAG
1 AGAAAAGAAGAAAAG
8640587 A
1 A
8640588 AAGAAAAACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (15 bp):
AGAAAAGAAGAAAAG
Found at i:8642475 original size:191 final size:192
Alignment explanation
Indices: 8642145--8642532 Score: 760
Period size: 191 Copynumber: 2.0 Consensus size: 192
8642135 AAACTATTTT
8642145 TCAAAGGTTTTGTTATATAAAAAATGGGGAGACCATTGAACCTATATTTTGATATAACAAATAAG
1 TCAAAGGTTTTGTTATATAAAAAATGGGGAGACCATTGAACCTATATTTTGATATAACAAATAAG
8642210 AGTAAAATATTTTTGGACATAATTGAATTTGTTCAAATGATTCAAAAATAATTCAAAGTCCACAA
66 AGTAAAATATTTTTGGACATAATTGAATTTGTTCAAATGATTCAAAAATAATTCAAAGTCCACAA
8642275 AACTTGAAAAATGTTTTCCAAGTTTTTTTGCTTAATCTACACCTTAGAGTAAGTTTAGAAAC
131 AACTTGAAAAATGTTTTCCAAGTTTTTTTGCTTAATCTACACCTTAGAGTAAGTTTAGAAAC
8642337 TCAAA-GTTTTGTTATATAAAAAATGGGGAGACCATTGAACCTATATTTTGATATAACAAATAAG
1 TCAAAGGTTTTGTTATATAAAAAATGGGGAGACCATTGAACCTATATTTTGATATAACAAATAAG
*
8642401 AGTAAAATATTTTTGGACTTAATTGAATTTGTTCAAATGATTCAAAAATAATTCAAAGTCCACAA
66 AGTAAAATATTTTTGGACATAATTGAATTTGTTCAAATGATTCAAAAATAATTCAAAGTCCACAA
8642466 AACTTGAAAAATGTTTTCCAAGTTTTTTTGCTTAATCTACACCTTAGAGTAAGTTTAGAAAC
131 AACTTGAAAAATGTTTTCCAAGTTTTTTTGCTTAATCTACACCTTAGAGTAAGTTTAGAAAC
8642528 TCAAA
1 TCAAA
8642533 ATATTCAATT
Statistics
Matches: 195, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
191 190 0.97
192 5 0.03
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (192 bp):
TCAAAGGTTTTGTTATATAAAAAATGGGGAGACCATTGAACCTATATTTTGATATAACAAATAAG
AGTAAAATATTTTTGGACATAATTGAATTTGTTCAAATGATTCAAAAATAATTCAAAGTCCACAA
AACTTGAAAAATGTTTTCCAAGTTTTTTTGCTTAATCTACACCTTAGAGTAAGTTTAGAAAC
Found at i:8642630 original size:20 final size:21
Alignment explanation
Indices: 8642605--8642661 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
8642595 ATTTTCAGCA
8642605 TGGTTTCGAAACCCCT-TACC
1 TGGTTTCGAAACCCCTATACC
*
8642625 TGGTTTTGAAACCCCCTATACC
1 TGGTTTCGAAA-CCCCTATACC
* *
8642647 TGATTTCAAAACCCC
1 TGGTTTCGAAACCCC
8642662 CTGCCTAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 10 0.32
21 9 0.29
22 12 0.39
ACGTcount: A:0.25, C:0.33, G:0.12, T:0.30
Consensus pattern (21 bp):
TGGTTTCGAAACCCCTATACC
Found at i:8642661 original size:21 final size:21
Alignment explanation
Indices: 8642608--8642679 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 21
8642598 TTCAGCATGG
* *
8642608 TTTCGAAACCCCTTACCTGGT
1 TTTCAAAACCCCTTACCTGGA
* *
8642629 TTTGAAACCCCCTATACCT-GA
1 TTTCAAAACCCCT-TACCTGGA
* * *
8642650 TTTCAAAACCCCCTGCCTAG-
1 TTTCAAAACCCCTTACCTGGA
8642670 TTTCAAAACC
1 TTTCAAAACC
8642680 GCATGTTACA
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
20 14 0.34
21 22 0.54
22 5 0.12
ACGTcount: A:0.26, C:0.35, G:0.10, T:0.29
Consensus pattern (21 bp):
TTTCAAAACCCCTTACCTGGA
Found at i:8644582 original size:20 final size:20
Alignment explanation
Indices: 8644557--8644599 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
8644547 ATTTTCTTTC
* *
8644557 AAAAACAAAATTAGATTTTG
1 AAAAACAAAATGAAATTTTG
8644577 AAAAACAAAATGAAATTTTG
1 AAAAACAAAATGAAATTTTG
8644597 AAA
1 AAA
8644600 CATAATTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.60, C:0.05, G:0.09, T:0.26
Consensus pattern (20 bp):
AAAAACAAAATGAAATTTTG
Found at i:8645721 original size:21 final size:20
Alignment explanation
Indices: 8645695--8645755 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
8645685 AATTTCAGTA
*
8645695 TGGTTTCAAAACCCTCTTGCT
1 TGGTTTCAAAACCC-CTTGCC
* *
8645716 TGGTTTCGAAACCCCCTATACC
1 TGGTTTC-AAAACCCCT-TGCC
8645738 TGGTTTCAAAACCCCTTG
1 TGGTTTCAAAACCCCTTG
8645756 TTATAATGGC
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
20 1 0.03
21 17 0.52
22 15 0.45
ACGTcount: A:0.21, C:0.31, G:0.15, T:0.33
Consensus pattern (20 bp):
TGGTTTCAAAACCCCTTGCC
Found at i:8647049 original size:34 final size:34
Alignment explanation
Indices: 8647010--8647082 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
8647000 TTATTTTAAC
8647010 GATAAACTATATTATGAACATAGGATTCTATTTT
1 GATAAACTATATTATGAACATAGGATTCTATTTT
* * *
8647044 GATAAATTATATTATTACCATAGGATTCTATTTT
1 GATAAACTATATTATGAACATAGGATTCTATTTT
8647078 GATAA
1 GATAA
8647083 TTATCTTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.42
Consensus pattern (34 bp):
GATAAACTATATTATGAACATAGGATTCTATTTT
Found at i:8650681 original size:54 final size:56
Alignment explanation
Indices: 8650549--8650690 Score: 157
Period size: 55 Copynumber: 2.6 Consensus size: 56
8650539 AAAAGTTGAG
* ** *
8650549 AAATTCATACTAAGTGTATGAATTTCTGTAT-GAGCACTTTGTGTGCAAAACTAAA
1 AAATTCATAATAAGTGTATGAATTTCTGTATGGAGCACTACGTGTACAAAACTAAA
* * ** *
8650604 AAATTCATACTACGTGTATGAATTTCTGTATGGA-CACTACGTGTAC-GGACTAAT
1 AAATTCATAATAAGTGTATGAATTTCTGTATGGAGCACTACGTGTACAAAACTAAA
*
8650658 AAA-TCTATAATAAGTGTATGAATTTCCGTATGG
1 AAATTC-ATAATAAGTGTATGAATTTCTGTATGG
8650691 CAAATATATG
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
53 2 0.03
54 32 0.43
55 39 0.52
56 2 0.03
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.35
Consensus pattern (56 bp):
AAATTCATAATAAGTGTATGAATTTCTGTATGGAGCACTACGTGTACAAAACTAAA
Found at i:8650966 original size:67 final size:67
Alignment explanation
Indices: 8650893--8651671 Score: 1010
Period size: 67 Copynumber: 11.8 Consensus size: 67
8650883 AAATAGAAGA
* * *
8650893 TTGAGGCATAACTGTGCATTGATAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGC
1 TTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGC
8650958 CT
66 CT
* * * * * * *
8650960 TTGAGGCCTAACTGTGAATTGATAGAAAGGTTTTAATTATGCCAGTTACATTAAAGGCTAAGTGT
1 TTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGC
8651025 CT
66 CT
* * * *
8651027 TTGAGGCCTAACTATGCATTGATAGAAAGGTGTCAATCATG-CA---AG-T--TA-GCTAAGTGC
1 TTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGC
8651084 CT
66 CT
*
8651086 TTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGC
1 TTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGC
8651151 CT
66 CT
* * * * *
8651153 TTGAGGCCTAACTATACATTAACAGAAATGTGTCAATTATGTCAGTTAGATGAAAGGCT-AGTGC
1 TTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGC
8651217 CT
66 CT
* * * * *
8651219 TTGAGGCCTAACTTTGCTTTGACAGAAATGTGTCAATTATGCCAATTAGATGAAATGCTAAGTGC
1 TTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGC
8651284 CT
66 CT
** * * *
8651286 TTGAGGCCTAACTGTGCATACACAG-AAGGTGGCAATTATTCCATTTAGATGAAAGGCTAAGTGC
1 TTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGC
8651350 CT
66 CT
* * * *
8651352 TTGAGTCATAACTATTCATTGACAGAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTG
1 TTGAGGCCTAACTGTGCATTGACAG-AAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTG
8651417 CCT
65 CCT
* *
8651420 TTGAGGCCTAACTGTGCATTGACAGAAAGATGTCAATTATGTCAGTTAGATGAAAGGCTAAGTGC
1 TTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGC
8651485 CT
66 CT
* *
8651487 TTGAGGCCTAA-T-TGTATTGACAGAAAGATGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGC
1 TTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGC
8651550 C-
66 CT
* * * * ***
8651551 TTGAGGCCTAACTGTGCATTGGCAGAAATGTGTCAATTATGCCTGTTAGATGACAGAAGAAGTGC
1 TTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGC
8651616 CT
66 CT
* * *
8651618 TTGAGGACTAACTGTGCATTGGCAGAAAGGTGCCAATTATGCCA-TCTAGATGAA
1 TTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTATGCCAGT-TAGATGAA
8651672 CATTAAAGAC
Statistics
Matches: 625, Mismatches: 72, Indels: 30
0.86 0.10 0.04
Matches are distributed among these distances:
59 49 0.08
60 3 0.00
62 1 0.00
63 3 0.00
64 12 0.02
65 51 0.08
66 162 0.26
67 285 0.46
68 59 0.09
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (67 bp):
TTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGC
CT
Found at i:8651268 original size:133 final size:134
Alignment explanation
Indices: 8651075--8651671 Score: 818
Period size: 133 Copynumber: 4.5 Consensus size: 134
8651065 ATGCAAGTTA
* *
8651075 GCTAAGTGCCTTTGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAA
1 GCTAAGTGCCTTTGAGGCCTAACTTTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA
* *
8651140 AGGCTAAGTGCCTTTGAGGCCTAACTATACATTAACAGAAATGTGTCAATTATGTCAGTTAGATG
66 AGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTAACAGAAATGTGTCAATTATGTCAGTTAGATG
8651205 AAAG
131 AAAG
* * *
8651209 GCT-AGTGCCTTTGAGGCCTAACTTTGCTTTGACAGAAATGTGTCAATTATGCCAATTAGATGAA
1 GCTAAGTGCCTTTGAGGCCTAACTTTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA
* * * *
8651273 ATGCTAAGTGCCTTTGAGGCCTAACTGTGCA-TACACAG-AAGGTGGCAATTAT-TCCATTTAGA
66 AGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTA-ACAGAAATGTGTCAATTATGT-CAGTTAGA
8651335 TGAAAG
129 TGAAAG
* *
8651341 GCTAAGTGCCTTTGAGTCATAACTATT-CATTGACAGAAAAGGTGTCAATTATGCCAGTTAGATG
1 GCTAAGTGCCTTTGAGGCCTAACT-TTGCATTGACAG-AAAGGTGTCAATTATGCCAGTTAGATG
*
8651405 AAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTGACAGAAA-GATGTCAATTATGTCAGTTAG
64 AAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTAACAGAAATG-TGTCAATTATGTCAGTTAG
8651469 ATGAAAG
128 ATGAAAG
* *
8651476 GCTAAGTGCCTTTGAGGCCTAA--TTGTATTGACAGAAAGATGTCAATTATGCCAGTTAGATGAA
1 GCTAAGTGCCTTTGAGGCCTAACTTTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA
** * *
8651539 AGGCTAAGTGCC-TTGAGGCCTAACTGTGCATTGGCAGAAATGTGTCAATTATGCCTGTTAGATG
66 AGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTAACAGAAATGTGTCAATTATGTCAGTTAGATG
*
8651603 ACAG
131 AAAG
*** * * * *
8651607 AAGAAGTGCCTTTGAGGACTAACTGTGCATTGGCAGAAAGGTGCCAATTATGCCA-TCTAGATGA
1 GCTAAGTGCCTTTGAGGCCTAACTTTGCATTGACAGAAAGGTGTCAATTATGCCAGT-TAGATGA
8651671 A
65 A
8651672 CATTAAAGAC
Statistics
Matches: 412, Mismatches: 37, Indels: 29
0.86 0.08 0.06
Matches are distributed among these distances:
131 69 0.17
132 74 0.18
133 156 0.38
134 67 0.16
135 45 0.11
136 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (134 bp):
GCTAAGTGCCTTTGAGGCCTAACTTTGCATTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA
AGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTAACAGAAATGTGTCAATTATGTCAGTTAGATG
AAAG
Found at i:8656409 original size:354 final size:347
Alignment explanation
Indices: 8655785--8656488 Score: 1304
Period size: 354 Copynumber: 2.0 Consensus size: 347
8655775 GATCATAAAC
8655785 TAGCCTATGTGGTGCTTGAGAAATGATTAGGAAACCGAGCAATCTAGTAGCTAGGTAAACACTTG
1 TAGCCTATGTGGTGCTTGAGAAATGATTAGGAAACCGAGCAATCTAGTAGCTAGGTAAACACTTG
8655850 CGGTAGAATGTCCAGACAAGTCTTAATTTGTGTACAAGGTACTTTTTTACCGACTGAGCGTAGAT
66 CGGTAGAATGTCCAGACAAGTCTTAATTTGTGTACAAGGTACTTTTTTACCGACTGAGCGTAGAT
8655915 GCCCAAGTAATCGTATGGAGTAGGTTGGTTGGGGTGAACTTTTCGATGTGGAAATTTTGGATCTC
131 GCCCAAGTAATCGTATGGAGTAGGTTGGTT-GGGTGAACTTTTCGATGTGGAAATTTTGGATCTC
8655980 TCACACTAAGTAGGCTTGAGGTGTGTTGTCTATGAAATCTAGCGAAACCTTTCGACCACACCATG
195 TCACACTAAGTAGGCTTGAGGTGTGTTGTCTATGAAATCTAGCGAAACCTTTCGACCACACCATG
8656045 ATTTCCACCTTTTTATGTATGTTTAGGTTTGCATTTTCGTATGAAATATTTATGTTAGCGAGCAT
260 ATTTCCACCTTTTTATGTATGTTTAGGTTTGCATTTTCGTATGAAATATTTATGTTAGCGAGCAT
8656110 GATCATATAATGGATGCATATAG
325 GATCATATAATGGATGCATATAG
8656133 TAGCCTATGTGGTGCTTGAGAAATGATTAGGAAACCCGAGCTAATCTAGTAGCTA-GTAAACACT
1 TAGCCTATGTGGTGCTTGAGAAATGATTAGGAAA-CCGAGC-AATCTAGTAGCTAGGTAAACACT
8656197 TGCGTGGTAGAATGTCCAGACAAGTCTTAATTTGTGTACAAGGTACTTTTTTACCCGACTGAGCG
64 TGC--GGTAGAATGTCCAGACAAGTCTTAATTTGTGTACAAGGTACTTTTTTA-CCGACTGAGCG
8656262 TAGATGGCCCCAAGTAATCGTATGGAGTAGGTTGGTT-GGTGAACTTTTCGATGTGGAAATTTTG
126 TAGAT-G-CCCAAGTAATCGTATGGAGTAGGTTGGTTGGGTGAACTTTTCGATGTGGAAATTTTG
8656326 GATTCTCTCACACTAAGTAGGCTTGAGGTGTGTATGTCTATGAAATCTAGCGAAACCTTTCGACC
189 GA-TCTCTCACACTAAGTAGGCTTGAGGTGTGT-TGTCTATGAAATCTAGCGAAACCTTTCGACC
8656391 ACACCATGATTTCCACCTTTTTATGTATGTTTAGGTTTGCATTTTCGTATGAAATATTTATGTTA
252 ACACCATGATTTCCACCTTTTTATGTATGTTTAGGTTTGCATTTTCGTATGAAATATTTATGTTA
8656456 GCGAGCATGATCATATAATGGATGCATATAG
317 GCGAGCATGATCATATAATGGATGCATATAG
8656487 TA
1 TA
8656489 TAGTTTGGTT
Statistics
Matches: 347, Mismatches: 0, Indels: 12
0.97 0.00 0.03
Matches are distributed among these distances:
348 34 0.10
349 18 0.05
350 13 0.04
351 48 0.14
352 45 0.13
353 31 0.09
354 158 0.46
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (347 bp):
TAGCCTATGTGGTGCTTGAGAAATGATTAGGAAACCGAGCAATCTAGTAGCTAGGTAAACACTTG
CGGTAGAATGTCCAGACAAGTCTTAATTTGTGTACAAGGTACTTTTTTACCGACTGAGCGTAGAT
GCCCAAGTAATCGTATGGAGTAGGTTGGTTGGGTGAACTTTTCGATGTGGAAATTTTGGATCTCT
CACACTAAGTAGGCTTGAGGTGTGTTGTCTATGAAATCTAGCGAAACCTTTCGACCACACCATGA
TTTCCACCTTTTTATGTATGTTTAGGTTTGCATTTTCGTATGAAATATTTATGTTAGCGAGCATG
ATCATATAATGGATGCATATAG
Found at i:8664351 original size:30 final size:30
Alignment explanation
Indices: 8664268--8664352 Score: 75
Period size: 30 Copynumber: 2.9 Consensus size: 30
8664258 TTTGGCTAGT
* * *
8664268 GACCAAA-ATGTAAGTTTTGAAAGTTTGGT
1 GACCAAATATGTAAATTTTGAAAGTTTAGA
* * * *
8664297 TACTAAAT-TATAAATTTAGAAAAGTTTAGA
1 GACCAAATATGTAAATTTTG-AAAGTTTAGA
*
8664327 GACCAAATATGTAATTTTTGAAAGTT
1 GACCAAATATGTAAATTTTGAAAGTT
8664353 ATGTTTTTGG
Statistics
Matches: 41, Mismatches: 12, Indels: 5
0.71 0.21 0.09
Matches are distributed among these distances:
29 13 0.32
30 20 0.49
31 8 0.20
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.36
Consensus pattern (30 bp):
GACCAAATATGTAAATTTTGAAAGTTTAGA
Found at i:8680362 original size:27 final size:27
Alignment explanation
Indices: 8680332--8680387 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
8680322 CATCACTTCC
*
8680332 TCCAATCTTTTAAAATCTATAATTTAG
1 TCCAATCTTTTAAAATCTAAAATTTAG
*
8680359 TCCAATCTTTTAAAATTTAAAATTTAG
1 TCCAATCTTTTAAAATCTAAAATTTAG
8680386 TC
1 TC
8680388 TTTAGTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.14, G:0.04, T:0.45
Consensus pattern (27 bp):
TCCAATCTTTTAAAATCTAAAATTTAG
Found at i:8680416 original size:25 final size:24
Alignment explanation
Indices: 8680371--8680425 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
8680361 CAATCTTTTA
*
8680371 AAATTTAAAATTTAGTCTTTAGTTT
1 AAATTTAAAATTTAGTATTTA-TTT
*
8680396 AAATTATAAATTTTA-TATTTATTT
1 AAATT-TAAAATTTAGTATTTATTT
8680420 -AATTTA
1 AAATTTA
8680426 GTACTAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 2 0.07
23 4 0.15
24 3 0.11
25 10 0.37
26 8 0.30
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (24 bp):
AAATTTAAAATTTAGTATTTATTT
Found at i:8681933 original size:2 final size:2
Alignment explanation
Indices: 8681926--8681967 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
8681916 AAAATTAATC
8681926 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8681968 TAAATACACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8686165 original size:54 final size:54
Alignment explanation
Indices: 8686101--8686293 Score: 221
Period size: 54 Copynumber: 3.6 Consensus size: 54
8686091 TACCGAATGA
8686101 GCACTATGTGTGCAACCTTAGAAATTCATAATAAGTTTATGAATTTCCGTATTG
1 GCACTATGTGTGCAACCTTAGAAATTCATAATAAGTTTATGAATTTCCGTATTG
* * *
8686155 GCACTATGTGTGCAACCTAAGAAATTCATAATAAGTTCATGAACTTCCGTATTG
1 GCACTATGTGTGCAACCTTAGAAATTCATAATAAGTTTATGAATTTCCGTATTG
* * * * * * *
8686209 GCACTGTGTGTGCAATC-TACGTAATTCATAGTAAG-TTGTGGATTACCGTATTG
1 GCACTATGTGTGCAACCTTA-GAAATTCATAATAAGTTTATGAATTTCCGTATTG
* * * *
8686262 GCACTACGGGTGCAAACTATAG-AATTTATAAT
1 GCACTATGTGTGCAACCT-TAGAAATTCATAAT
8686294 GAAAATAAAT
Statistics
Matches: 117, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
53 35 0.30
54 80 0.68
55 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (54 bp):
GCACTATGTGTGCAACCTTAGAAATTCATAATAAGTTTATGAATTTCCGTATTG
Found at i:8686581 original size:81 final size:81
Alignment explanation
Indices: 8686352--8688146 Score: 2426
Period size: 81 Copynumber: 22.2 Consensus size: 81
8686342 TATTCTAAAA
* * * * *
8686352 TAAAGGACTAAAAGCCTAACTGTGCATTTGGCAGAAATGTGTCAATCATACAAATTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
8686417 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * ** *
8686433 TAAAAGACTAAAAG-CTAACTGTGCATTTGGTATAAATATGTCAAACATGCCAGTTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
8686497 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * * * *
8686513 TAAAACACTAAAACCCTAATTGTGCATTTGGAAGAAAGGTGTCAATCATGCCAGTTAGATAAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
8686578 GTTAATTGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * * * *
8686594 TAAAAGACTAAAAGTCTAACGGTGTATTTGGCAGAAAGATGTCAATCATGCCAGTTAGATGGAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
* *
8686659 GTTAAGTTCCTTTGAG
66 GTTAAATGCCTTTGAG
* * * * * * *
8686675 TAAAATACTAGAAGCCTAAATATACATTTGGAAGAAAGGTGTCAATCATGCTAGTTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
** *
8686740 GTTAAATAACTTTAAG
66 GTTAAATGCCTTTGAG
* * ** * * *
8686756 TTAACGACTAAAATTCTAAATGTGCATTTGGCGGAAAGGTGTCAATCATGCCAATTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
8686821 GTGAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * ** * ** *
8686837 TAAAATACT-AATGAATAACTGTGCATTTAGCAGATTGGTGTCAATCATACCAGTTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
8686901 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
** * *
8686917 TAAAAGACTAAAAGAATAAATGTGTATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
8686982 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * *
8686998 TAAAAGACTAAAAGCCTAACAGTGCATTTGGAAGAAAGGTGTAAATCATGCCAGTTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
8687063 ATTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * * *
8687079 TAAAAGACTAAAAGCCTAACTTTGCATTTGGCAGAAAGGTGTCACTCATGCTAGTTAGATGAAAT
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
* * *
8687144 GCTAAATTCCTTAGAG
66 GTTAAATGCCTTTGAG
* ** * * *
8687160 AAAAAGACTAAAAGCCTAGTTGTGCATTTAGCAGAAAGGTGTCATTCATGCCAGTTAGAAGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
8687225 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * * * * * *
8687241 TAAAAGACTAAAACCCTAACTATGTATTTGGAAAAAAATGTGTCAATCATACCAGTTAGATGAAA
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGG-CAGAAAGGTGTCAATCATGCCAGTTAGATGAAA
8687306 GGTTAAATGCCTTTGAG
65 GGTTAAATGCCTTTGAG
* * *
8687323 TAAAAGACTAAAAGGCTAACTGTGCATTTGGCATAAATGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
8687388 GTTAAATACCTTTGAG
66 GTTAAATGCCTTTGAG
* * * * * * *
8687404 TAAAAAACTAAAAGTCTAATTGTGAATTTGGAAAAAAGGTGTCAATCATGCCAGTTAGATGAAAT
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
8687469 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * * * *
8687485 TAAAAGATTAAAAGCCTAACTGTGTATTTGGTAGAAATGTGTCAATCATGCCAATTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
* *
8687550 GTGAAATGCCTTTCAG
66 GTTAAATGCCTTTGAG
* * * * *
8687566 TAAAATACTAAAAGCCTAACTATGCATTTGGCAGATAGGTGTCAATTATGCCCGTTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
8687631 GTTAAATGTCTTTGAG
66 GTTAAATGCCTTTGAG
* **
8687647 TAAAAGACTAAAAGCCTAAATGTGCATTTGAG-AGAAATATGTCAATCATGCCAGTTAGATGAAA
1 TAAAAGACTAAAAGCCTAACTGTGCATTTG-GCAGAAAGGTGTCAATCATGCCAGTTAGATGAAA
8687711 GGTTAAATGCCTTTGAG
65 GGTTAAATGCCTTTGAG
*
8687728 TAAAAGACTAAAAGCCTAACTGTGAATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
8687793 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * ** * * * *
8687809 TAGAAGACTAAAAGCCTAACTGTGTATTTATCAAAAAGGTATCGATCATGCCAGTTAGATGAAAT
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
8687874 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* ** * **
8687890 TAAAAGACTAAAAGCCTAACTGTGCGTTTGTTAAAAAGGTGTCAATCATGAAAGTTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
8687955 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * *
8687971 TAAAAGACTAAAAGCCTAACAGTGCATTTGACAGAAAGATGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
8688036 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
*
8688052 TAAAAGACTAAAAGGCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
8688117 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* *
8688133 AAAAAGAATAAAAG
1 TAAAAGACTAAAAG
8688147 AGTTCAACTT
Statistics
Matches: 1493, Mismatches: 216, Indels: 10
0.87 0.13 0.01
Matches are distributed among these distances:
80 139 0.09
81 1282 0.86
82 72 0.05
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (81 bp):
TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
GTTAAATGCCTTTGAG
Found at i:8691685 original size:20 final size:20
Alignment explanation
Indices: 8691660--8691700 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
8691650 TGTATCAAGG
8691660 TCTTTTTT-GAAGCCATGAAA
1 TCTTTTTTCGAAGCCAT-AAA
*
8691680 TCTTTTTTCGATGCCATAAA
1 TCTTTTTTCGAAGCCATAAA
8691700 T
1 T
8691701 TCATGCAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (20 bp):
TCTTTTTTCGAAGCCATAAA
Found at i:8695348 original size:32 final size:32
Alignment explanation
Indices: 8695307--8695369 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
8695297 ATTCAAAGAC
*
8695307 TATTGTCTAAAATAAGGAGAACCATGGAGGTT
1 TATTGTCTAAAACAAGGAGAACCATGGAGGTT
* * *
8695339 TATTGTCTAAAACAAGGGGGACCGTGGAGGT
1 TATTGTCTAAAACAAGGAGAACCATGGAGGT
8695370 CTCTATGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.25
Consensus pattern (32 bp):
TATTGTCTAAAACAAGGAGAACCATGGAGGTT
Found at i:8701821 original size:453 final size:453
Alignment explanation
Indices: 8700850--8702473 Score: 2883
Period size: 453 Copynumber: 3.6 Consensus size: 453
8700840 GATGAAAATG
* * * * * *
8700850 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTTAAAAACATCAAAAAGT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGG--CTTGAAAACATCAAAAAGC
* *
8700915 TCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATTACCCTAAGGCTTTGAAAA
64 TCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGC-TTGAAAA
* * *
8700980 CATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACTGATGACCCTAA
128 CATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAA
*
8701045 GGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTATGACTTACA
193 GGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACA
*
8701110 GATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCAAAGGCTTTTTGGAAACATCATGCACTG
258 GATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTG
8701175 TAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAAC
323 TAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAAC
* *
8701240 ATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAACTCCTGAATGCT
388 ATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTCCTGAAGGCT
8701305 T
453 T
* *
8701306 TTTGGAAACATCATGCACTGTAGGACTTACATATGACCCGAAGGCTTGAAAACATTAAAAAGCTC
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTC
8701371 CCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACAT
66 CCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACAT
* *
8701436 CAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCATTGTATGACTTACAGATGACCCTAAGGC
131 CAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGC
8701501 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTTGGAAACATCATGCACTGTAGGACTTACAGA
196 TTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTTTGGAAACATCATGCACTGTAGGACTTACAGA
*
8701566 TGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTAGGAAACATCATGCACTGTA
260 TGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGTA
*
8701631 GGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG-AACAT
325 GGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACAT
*
8701695 CATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTTCC-AAAGGCTT
390 CATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGC-TCCTGAAGGCTT
* *
8701759 TTTGGAAACATCATGCACTGTAGGCCTTACAGATGACCTGAAGGCTTGAAAACATCAAAAAGCTC
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTC
8701824 CCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACAT
66 CCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACAT
*
8701889 CAAAAAGCTCACGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGC
131 CAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGC
* * *
8701954 TTTGAAAACATTAAAAAGCTCTCGAAGGCTTTTTTGGAAACATCATGCACTGTAGGACTTACATA
196 TTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTTTGGAAACATCATGCACTGTAGGACTTACAGA
* *
8702019 TGACCCTAAGGCTTTGAAAATATCAAAAAGATCCTGAAGGCTTTTTGGAAACATCATGCACTGTA
260 TGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGTA
*
8702084 GGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGGTCCCGAAGGCTTTTTGGAAACAT
325 GGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACAT
8702149 CATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTCCTGAAGGCTT
390 CATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTCCTGAAGGCTT
*
8702213 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGACTTGAAAACATCAAAAAGCTC
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTC
8702278 CCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACAT
66 CCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACAT
*
8702343 CAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTATAGGACTTACAGATGACCCTAAGGC
131 CAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGC
8702408 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGAT
196 TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGAT
8702473 G
261 G
8702474 TAGGAAATAG
Statistics
Matches: 1119, Mismatches: 45, Indels: 11
0.95 0.04 0.01
Matches are distributed among these distances:
453 570 0.51
454 509 0.45
456 40 0.04
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (453 bp):
TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTC
CCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACAT
CAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGC
TTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGAT
GACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGTAG
GACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATC
ATGCACTGTAGGACTTACAGATGACCCGAAGGCTTGAAAACATCAAAAAGCTCCTGAAGGCTT
Found at i:8702500 original size:76 final size:76
Alignment explanation
Indices: 8700850--8702473 Score: 2721
Period size: 75 Copynumber: 21.5 Consensus size: 76
8700840 GATGAAAATG
* * * * * * *
8700850 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTTAAAAACATCAAAAAGT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGG-CTTTGAAAACATCAAAAAGC
8700915 TCCCGAAGGCTT
65 TCCCGAAGGCTT
* *
8700927 TTTGGAAACATCATGCACTGTAGGACTTACAGATTACCCTAAGGCTTTGAAAACATCAAAAAGAT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
8700992 CCCGAAGGCTT
66 CCCGAAGGCTT
* *
8701003 TTTGGAAACATCATGCACTGCAGGACTTACTGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
8701068 CCCGAAGGCTT
66 CCCGAAGGCTT
* *
8701079 TTTGGAAACATCATGCACTGTATGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGAT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
*
8701144 CCCAAAGGCTT
66 CCCGAAGGCTT
*
8701155 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGAT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
8701220 CCCGAAGGCTT
66 CCCGAAGGCTT
* *
8701231 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAACT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
* *
8701295 CCTGAATGCTT
66 CCCGAAGGCTT
* * *
8701306 TTTGGAAACATCATGCACTGTAGGACTTACATATGACCCGAAGGC-TTGAAAACATTAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
8701370 CCCGAAGGCTT
66 CCCGAAGGCTT
*
8701381 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
8701445 CCCGAAGGCTT
66 CCCGAAGGCTT
* *
8701456 TTTGGAAACATCATGCATTGTATGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
8701521 CCCGAAGGCTTT
66 CCCGAAGGC-TT
*
8701533 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGAT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
8701598 CCCGAAGGCTT
66 CCCGAAGGCTT
*
8701609 TTAGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
8701674 CCCGAAGGCTT
66 CCCGAAGGCTT
*
8701685 TTTGG-AACATCATGCACTGTAGGACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
* *
8701748 TCCAAAGGCTT
66 CCCGAAGGCTT
*
8701759 TTTGGAAACATCATGCACTGTAGGCCTTACAGATGA-CCTGAAGGC-TTGAAAACATCAAAAAGC
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCT-AAGGCTTTGAAAACATCAAAAAGC
8701822 TCCCGAAGGCTT
65 TCCCGAAGGCTT
*
8701834 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
*
8701898 CACGAAGGCTT
66 CCCGAAGGCTT
*
8701909 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATTAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
*
8701974 CTCGAAGGCTTT
66 CCCGAAGGC-TT
* * *
8701986 TTTGGAAACATCATGCACTGTAGGACTTACATATGACCCTAAGGCTTTGAAAATATCAAAAAGAT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
*
8702051 CCTGAAGGCTT
66 CCCGAAGGCTT
*
8702062 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGGT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
8702127 CCCGAAGGCTT
66 CCCGAAGGCTT
*
8702138 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
*
8702202 CCTGAAGGCTT
66 CCCGAAGGCTT
* *
8702213 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGAC-TTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
8702277 CCCGAAGGCTT
66 CCCGAAGGCTT
*
8702288 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
8702352 CCCGAAGGCTT
66 CCCGAAGGCTT
*
8702363 TTTGGAAACATCATGCACTATAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
8702428 CCCGAAGGCTT
66 CCCGAAGGCTT
8702439 TTTGGAAACATCATGCACTGTAGGACTTACAGATG
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATG
8702474 TAGGAAATAG
Statistics
Matches: 1467, Mismatches: 72, Indels: 17
0.94 0.05 0.01
Matches are distributed among these distances:
74 35 0.02
75 642 0.44
76 608 0.41
77 182 0.12
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (76 bp):
TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
CCCGAAGGCTT
Found at i:8705804 original size:114 final size:114
Alignment explanation
Indices: 8705604--8705823 Score: 361
Period size: 114 Copynumber: 1.9 Consensus size: 114
8705594 GATCATGCAG
* *
8705604 TTCATCTTTCAATTCCAATGATTGGTTCTGGGGTTCCTACCAAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCATACCAAATCAGATCAGATAACTCAAAGA
* * * *
8705669 ACACTTCTAGAAGATGTTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAAAAGATGCTATTGGGTCTCCTTATTCCTACTATGAGCAAA
*
8705718 TTCATCTTTCAAATCCAATGATTGGTT-TTGGGTCTCATACCAAATCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGT-TCATACCAAATCAGATCAGATAACTCAAAG
8705782 AACACTTCCAAAAGATGCTATTGGGTCTCCTTATTCCTACTA
65 AACACTTCCAAAAGATGCTATTGGGTCTCCTTATTCCTACTA
8705824 CGAGAACGTG
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
113 5 0.05
114 93 0.95
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCATACCAAATCAGATCAGATAACTCAAAGA
ACACTTCCAAAAGATGCTATTGGGTCTCCTTATTCCTACTATGAGCAAA
Done.