Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10629029
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 48 of 51
Found at i:9980357 original size:134 final size:134
Alignment explanation
Indices: 9980085--9980357 Score: 300
Period size: 134 Copynumber: 2.0 Consensus size: 134
9980075 AAAGGATGCT
* * *
9980085 ATAAATAAAATGCATAACGGTGCATTATCGGCATGAAATGATGCCATAAATCAATGTATAACGGT
1 ATAAATAAAATGCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATAAATGCATAACGGT
* ** ** * * * ** *
9980150 TCATTATCTGCATGAAAGGATGCCATAAATGAAATCCATAACAGTCCATTATCGTCATGAAAGGA
66 GCATTATAAGCATGAAAGGATGCCATAAATGAAATAAAGAACAATCCACTAAAGACATGAAAGGA
****
9980215 TGCC
131 AAAA
*
9980219 ATAAATGAAATGCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAATGCATAACGG
1 ATAAATAAAATGCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAAT-AAATGCATAACGG
* * *
9980284 TGCATTATAAGCATGAACA-GATGCCATAAATGAAAATAAAGAATAAT-TACTAAAGAGAT-AAA
65 TGCATTATAAGCATGAA-AGGATGCCATAAATG-AAATAAAGAACAATCCACTAAAGACATGAAA
9980346 GGAAAAA
128 GGAAAAA
9980353 ATAAA
1 ATAAA
9980358 AATATAAAGA
Statistics
Matches: 114, Mismatches: 22, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
134 60 0.53
135 44 0.39
136 10 0.09
ACGTcount: A:0.44, C:0.14, G:0.18, T:0.23
Consensus pattern (134 bp):
ATAAATAAAATGCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATAAATGCATAACGGT
GCATTATAAGCATGAAAGGATGCCATAAATGAAATAAAGAACAATCCACTAAAGACATGAAAGGA
AAAA
Found at i:9984291 original size:15 final size:15
Alignment explanation
Indices: 9984271--9984312 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
9984261 TGGATGCTTG
9984271 GTATCAATACCACTC
1 GTATCAATACCACTC
* *
9984286 GTATCAATACCGCTG
1 GTATCAATACCACTC
*
9984301 GTATCCATACCA
1 GTATCAATACCA
9984313 TATAAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (15 bp):
GTATCAATACCACTC
Found at i:9984361 original size:19 final size:20
Alignment explanation
Indices: 9984337--9984376 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
9984327 TATATTAGAG
*
9984337 GATT-GGTATCTATACCGAA
1 GATTGGGTATCCATACCGAA
9984356 GATTGGGTATCCATACCGAA
1 GATTGGGTATCCATACCGAA
9984376 G
1 G
9984377 GCTCGGTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (20 bp):
GATTGGGTATCCATACCGAA
Found at i:9984384 original size:20 final size:20
Alignment explanation
Indices: 9984341--9984386 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
9984331 TTAGAGGATT
* * *
9984341 GGTATCTATACCGAAGATTG
1 GGTATCCATACCGAAGACTC
*
9984361 GGTATCCATACCGAAGGCTC
1 GGTATCCATACCGAAGACTC
9984381 GGTATC
1 GGTATC
9984387 AGTACCCAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (20 bp):
GGTATCCATACCGAAGACTC
Found at i:9994159 original size:22 final size:22
Alignment explanation
Indices: 9994134--9994184 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 22
9994124 GGAATCGATA
*
9994134 CCCCCTTGAAGAGGAACTGATT
1 CCCCCTTAAAGAGGAACTGATT
*
9994156 CCCCCTTTAAAGGGGAACTGATT
1 CCCCC-TTAAAGAGGAACTGATT
9994179 CCCCCT
1 CCCCCT
9994185 GTAGGGGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 6 0.23
23 20 0.77
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.24
Consensus pattern (22 bp):
CCCCCTTAAAGAGGAACTGATT
Found at i:9994192 original size:21 final size:22
Alignment explanation
Indices: 9994146--9994206 Score: 72
Period size: 21 Copynumber: 2.8 Consensus size: 22
9994136 CCCTTGAAGA
*
9994146 GGAACTGATTCCCCCTTTAAAGG
1 GGAACTGATTCCCCCTGT-AAGG
9994169 GGAACTGATTCCCCCTGT-AGG
1 GGAACTGATTCCCCCTGTAAGG
*
9994190 GGAA-TCGATACCCCCTG
1 GGAACT-GATTCCCCCTG
9994207 GGGTTCTGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.03
21 17 0.49
23 17 0.49
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (22 bp):
GGAACTGATTCCCCCTGTAAGG
Found at i:10000256 original size:20 final size:20
Alignment explanation
Indices: 10000231--10000285 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
10000221 ACTGATATCA
*
10000231 TTGGTATCAATATCGGATGT
1 TTGGTATCAATATCAGATGT
*
10000251 TTGGTATCAATACCAGATGT
1 TTGGTATCAATATCAGATGT
10000271 TTGGTATCAATATCA
1 TTGGTATCAATATCA
10000286 CTGGTATCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (20 bp):
TTGGTATCAATATCAGATGT
Found at i:10000384 original size:20 final size:20
Alignment explanation
Indices: 10000330--10000374 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
10000320 CACATGACTG
10000330 GTATCCATATCAAAGATTGA
1 GTATCCATATCAAAGATTGA
10000350 GTATCCATATCAAAGATTGA
1 GTATCCATATCAAAGATTGA
10000370 GTATC
1 GTATC
10000375 TATACTAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (20 bp):
GTATCCATATCAAAGATTGA
Found at i:10001436 original size:32 final size:32
Alignment explanation
Indices: 10001400--10001494 Score: 140
Period size: 32 Copynumber: 3.0 Consensus size: 32
10001390 ACTAGTAGTG
* *
10001400 TGTTGCATTCAGATAATGCGCAAGAGTGTCAA
1 TGTTGCAATCAGATAATGCACAAGAGTGTCAA
10001432 TGTTGCAATCAGATAATGCACATA-AGTGTCAA
1 TGTTGCAATCAGATAATGCACA-AGAGTGTCAA
10001464 TGTTGCAATCAGATAATGCAC-AGCAGTGTCA
1 TGTTGCAATCAGATAATGCACAAG-AGTGTCA
10001495 TGGTCACATT
Statistics
Matches: 58, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
30 1 0.02
32 56 0.97
33 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (32 bp):
TGTTGCAATCAGATAATGCACAAGAGTGTCAA
Found at i:10002967 original size:2 final size:2
Alignment explanation
Indices: 10002962--10002994 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
10002952 TATTTTTCAA
10002962 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10002995 TATTTAATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10007876 original size:3 final size:3
Alignment explanation
Indices: 10007870--10007955 Score: 106
Period size: 3 Copynumber: 28.7 Consensus size: 3
10007860 TTCATTTAAA
10007870 TAT TAT T-T ATAT TAT TAT TAT TAT TAT ATAT TAT TA- TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* *
10007915 TAT TA- TAT TAT TAT TAT TAA TAT TAT TAT TAAA TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TA
10007956 CAAGCCCAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
2 5 0.07
3 62 0.85
4 6 0.08
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:10010108 original size:16 final size:16
Alignment explanation
Indices: 10010087--10010142 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 16
10010077 TCTTTCAAAT
10010087 TTTTTATTACTTATT-A
1 TTTTTATTA-TTATTAA
10010103 TTTTTATATATTATTAA
1 TTTTTAT-TATTATTAA
*
10010120 TTTTTATT-TTATTTA
1 TTTTTATTATTATTAA
10010135 TTTATTAT
1 TTT-TTAT
10010143 ATTCAAGAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
15 9 0.25
16 17 0.47
17 10 0.28
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTATTATTATTAA
Found at i:10010139 original size:23 final size:24
Alignment explanation
Indices: 10010085--10010141 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
10010075 TTTCTTTCAA
*
10010085 ATTT-TTTATTACTTATTATTTTT
1 ATTTATTTATTAATTATTATTTTT
* *
10010108 ATATA-TTATTAATTTTTA-TTTT
1 ATTTATTTATTAATTATTATTTTT
10010130 ATTTATTTATTA
1 ATTTATTTATTA
10010142 TATTCAAGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 8 0.29
23 20 0.71
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (24 bp):
ATTTATTTATTAATTATTATTTTT
Found at i:10014755 original size:1 final size:1
Alignment explanation
Indices: 10014749--10014792 Score: 61
Period size: 1 Copynumber: 44.0 Consensus size: 1
10014739 AAGAAAGAAG
* * *
10014749 AAAAAAAAAAAAAAACAAAACAAAACAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
10014793 TTGAATCAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:10017208 original size:112 final size:110
Alignment explanation
Indices: 10017006--10017223 Score: 332
Period size: 112 Copynumber: 2.0 Consensus size: 110
10016996 AAGTGCCACA
* *
10017006 TTCATAGTAGAAATAAGGAGCCCCAATAGCATCTTCTGGAAGTCTTTGAGTTATCTGATCTGGTT
1 TTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTCTTTGAGTTATCTGATCTGGTT
* *
10017071 TGGTATGAACCCCAAAACCAATCATT-AGATTGAAAGATGAATTTG
66 CGGTAGGAACCCCAAAACCAATCATTGA-ATTGAAAGATGAATTTG
10017116 TTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCT-GAAGTGTTCTTTGAGTTATCTGATCTG
1 TTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAA--G-TCTTTGAGTTATCTGATCTG
* *
10017180 GTTCGGTAGGAATCCCATAACCAATCATTGAATTGAAAGATGAA
63 GTTCGGTAGGAACCCCAAAACCAATCATTGAATTGAAAGATGAA
10017224 CTGCATGATC
Statistics
Matches: 98, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
109 3 0.03
110 35 0.36
111 1 0.01
112 58 0.59
113 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (110 bp):
TTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTCTTTGAGTTATCTGATCTGGTT
CGGTAGGAACCCCAAAACCAATCATTGAATTGAAAGATGAATTTG
Found at i:10019669 original size:22 final size:22
Alignment explanation
Indices: 10019641--10019719 Score: 122
Period size: 22 Copynumber: 3.6 Consensus size: 22
10019631 TACATCTACA
10019641 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
10019663 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
* * *
10019685 TTTTTAAAGATGACAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
10019707 TTTTCAAAGATGA
1 TCTTCAAAGATGA
10019720 AAGCTTTATC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 53 1.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (22 bp):
TCTTCAAAGATGATAGATTCTC
Found at i:10020829 original size:215 final size:223
Alignment explanation
Indices: 10020156--10020927 Score: 999
Period size: 215 Copynumber: 3.6 Consensus size: 223
10020146 TGCCAGGTCG
**
10020156 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAGGAAG--GTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACAAATCTGAAGAAGGAGGAAGAAGTTCATAATGAGAAGAACTTGTT-
*
10020219 AACTTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCATGTAGAGTTCATAATGAGAAGA
65 --CTTTTT-TTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGA
*
10020284 ACTCGTCATCT-AAGAAGAAAGAAGAAATTCATAATGAGAAGAATTTGTTC-ACCTTTTGCTCAA
127 ACTCGTCATCTGAAGAAGAAAG-A-AAATTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCAA
10020347 ATCCATCACTTGATGGATCAGCTTTTCCAGAG-A
190 ATCCATCACTTGATGGATCAGCTTTTCCAGAGAA
*
10020380 AGTTCATAATGAGAAGAACAAATCTGAAG-A--A-GAAGAAGTTCATAAT-----GAATTTGTTC
1 AGTTCATAATGAGAAGAACAAATCTGAAGAAGGAGGAAGAAGTTCATAATGAGAAGAACTTGTT-
*
10020436 AACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA-TTCATAATGAGAAGA
65 ---CTTTTTTTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGA
* * * *
10020500 ACT-GTCA--AG-AGAAGAAAG-AAGTTC---ATGAGAAGAACTTGTTCAACTTTTTGTTCAAA-
127 ACTCGTCATCTGAAGAAGAAAGAAAATTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCAAAT
*
10020556 ACATCAC-TGATGGATCAGCTTTTCCAGAGAA
192 CCATCACTTGATGGATCAGCTTTTCCAGAGAA
**
10020587 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAGGAAGAAG-TCATAATGAGAAGAACTTGTT-
1 AGTTCATAATGAGAAGAACAAATCTGAAGAAGGAGGAAGAAGTTCATAATGAGAAGAACTTGTTC
*
10020650 TTTTTTTTG-ATTCATCATTTGATGGATCAACATTGCCATGTAGA-TTCATAATGA-AAGAACTC
66 TTTTTTTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTC
10020712 GTCATCTGAAGAAGAAAGAAAATTCATAATGAGAAGAA-TT-TTCAACCTTTTGCTCAAATCCAT
131 GTCATCTGAAGAAGAAAGAAAATTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCAAATCCAT
*
10020775 CACTTGAT-GATCAACTTTTCCAGAGAA
196 CACTTGATGGATCAGCTTTTCCAGAGAA
* *
10020802 AGTTCATAATGAGAAGAACAAATCTGAAGAAGGAAG-A-AAGTTCATAATGAGAAGAATTTGTTC
1 AGTTCATAATGAGAAGAACAAATCTGAAGAAGGAGGAAGAAGTTCATAATGAGAAGAACTTGTT-
* *
10020865 ACCTTTTGTT-AA-TC-TCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAAC
65 -CTTTTTTTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAAC
10020927 T
129 T
10020928 TGTTCAACTT
Statistics
Matches: 485, Mismatches: 31, Indels: 71
0.83 0.05 0.12
Matches are distributed among these distances:
206 22 0.05
207 50 0.10
208 20 0.04
209 48 0.10
210 21 0.04
211 8 0.02
212 9 0.02
213 17 0.04
214 37 0.08
215 100 0.21
216 44 0.09
217 61 0.13
218 6 0.01
220 4 0.01
221 1 0.00
222 9 0.02
223 1 0.00
224 27 0.06
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (223 bp):
AGTTCATAATGAGAAGAACAAATCTGAAGAAGGAGGAAGAAGTTCATAATGAGAAGAACTTGTTC
TTTTTTTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTC
GTCATCTGAAGAAGAAAGAAAATTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCAAATCCAT
CACTTGATGGATCAGCTTTTCCAGAGAA
Found at i:10020857 original size:18 final size:18
Alignment explanation
Indices: 10020798--10020857 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 18
10020788 ACTTTTCCAG
10020798 AGAAAGTTCATAATGAGA
1 AGAAAGTTCATAATGAGA
**
10020816 AGAACAAATC-TGAA-GAAGGA
1 AGAA-AGTTCAT-AATG-A-GA
10020836 AGAAAGTTCATAATGAGA
1 AGAAAGTTCATAATGAGA
10020854 AGAA
1 AGAA
10020858 TTTGTTCACC
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
18 12 0.38
19 12 0.38
20 8 0.25
ACGTcount: A:0.53, C:0.07, G:0.23, T:0.17
Consensus pattern (18 bp):
AGAAAGTTCATAATGAGA
Found at i:10020993 original size:73 final size:68
Alignment explanation
Indices: 10020836--10020998 Score: 193
Period size: 73 Copynumber: 2.3 Consensus size: 68
10020826 TGAAGAAGGA
* * *
10020836 AGAAAGTTCATAATGAGAAGAATTTGTTCACCTTTTGTTAATCTCATTTGATGGATCAACATTGC
1 AGAAAGTTCATAATGAGAAGAACTTGTTCACCTTTTGTTAACCTCACTTGATGGATCAACATTGC
10020901 CAG
66 CAG
* * *
10020904 -GTAGAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTCAAAACCATCACTTGATGGATCAG
1 AG-AAAGTTCATAATGAGAAGAACTTGTTC-ACCTTTTGTT---AACC-TCACTTGATGGATCAA
* *
10020968 CTTTTCCAG
60 CATTGCCAG
10020977 AGAAAGTTCATAATGAGAAGAA
1 AGAAAGTTCATAATGAGAAGAA
10020999 TCATCTGAAG
Statistics
Matches: 79, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
67 1 0.01
68 25 0.32
69 9 0.11
72 3 0.04
73 40 0.51
74 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (68 bp):
AGAAAGTTCATAATGAGAAGAACTTGTTCACCTTTTGTTAACCTCACTTGATGGATCAACATTGC
CAG
Found at i:10021032 original size:17 final size:16
Alignment explanation
Indices: 10020983--10021069 Score: 63
Period size: 17 Copynumber: 5.1 Consensus size: 16
10020973 CCAGAGAAAG
10020983 TTCATAATGAGAAGAA
1 TTCATAATGAGAAGAA
10020999 -TCATCTGAA-GAAGAAGAA
1 TTCA--T-AATG-AGAAGAA
10021017 GTTCATAATGAGAAGAA
1 -TTCATAATGAGAAGAA
* *
10021034 CTCAT-CTGAAAGAAGAAA
1 TTCATAATG--AGAAG-AA
10021052 TTCATAATGAGAAGAA
1 TTCATAATGAGAAGAA
10021068 TT
1 TT
10021070 TGTTCAACAT
Statistics
Matches: 56, Mismatches: 4, Indels: 22
0.68 0.05 0.27
Matches are distributed among these distances:
15 5 0.09
16 8 0.14
17 21 0.38
18 17 0.30
19 2 0.04
20 3 0.05
ACGTcount: A:0.48, C:0.09, G:0.20, T:0.23
Consensus pattern (16 bp):
TTCATAATGAGAAGAA
Found at i:10021056 original size:34 final size:35
Alignment explanation
Indices: 10020977--10021068 Score: 143
Period size: 34 Copynumber: 2.6 Consensus size: 35
10020967 GCTTTTCCAG
10020977 AGAAAGTTCATAATGAGAAGAATCATCTGAAGAAGA
1 AGAAA-TTCATAATGAGAAGAATCATCTGAAGAAGA
*
10021013 AGAAGTTCATAATGAGAAGAACTCATCTG-A-AAGA
1 AGAAATTCATAATGAGAAGAA-TCATCTGAAGAAGA
10021047 AGAAATTCATAATGAGAAGAAT
1 AGAAATTCATAATGAGAAGAAT
10021069 TTGTTCAACA
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
33 1 0.02
34 24 0.45
35 17 0.32
36 11 0.21
ACGTcount: A:0.50, C:0.09, G:0.21, T:0.21
Consensus pattern (35 bp):
AGAAATTCATAATGAGAAGAATCATCTGAAGAAGA
Found at i:10021059 original size:424 final size:424
Alignment explanation
Indices: 10020156--10021175 Score: 1089
Period size: 424 Copynumber: 2.4 Consensus size: 424
10020146 TGCCAGGTCG
10020156 AGTTCATAATGAGAAGAACTCATCTG-AAGAAGGAGGAAGGTTCATAATGAGAAGAACTTGTTCA
1 AGTTCATAATGAGAAGAACTCATCTGAAAGAA-GA-GAA--TTCATAATGAGAAGAACTTGTT--
10020220 ACTTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCATGTAGAGTTCATAATGAGAAGAA
60 A-TTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCATGTAGAGTTCATAATGAGAAGAA
10020285 CTCGTCATCTAAGAAGAAAGAAGAAATTCATAATGAGAAGAATTTGTTCACCTTTTGCTCAAATC
124 CTCGTCATCTAAGAAGAAAGAAGAAATTCATAATGAGAAGAATTTGTTCACCTTTTGCTCAAATC
*
10020350 CATCACTTGATGGATCAGCTTTTCCAGAGAAGTTCATAATGAGAAGAACAAATCTGAAGAAGAAG
189 CATCACTTGATGGATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACAAATCTGAAGAAGAAG
10020415 AAGTTCATAATGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCAG
254 AAGTTCATAATGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCAG
* * * *
10020480 GTAGATTCATAATGAGAAGAACTGTCAAGAGAAGAAAGAAGTTCATGAGAAGAACTTGTTCAACT
319 GTAGATTCATAATGAGAAGAACTGTCAAGACAAGAAAGAACTTCATGAGAACAACTTGTTCAACA
**** * * *** *
10020545 TTTTGTTCAAAACATCACTGATGGATCAGCTTTTCCAGAGAA
384 GAAAGTTCAAAACATCAC-GAAGAATCAGCTGAACAAGAGAA
* *
10020587 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAGGAAGAAGTCATAATGAGAAGAACTTGTT-T
1 AGTTCATAATGAGAAGAACTCATCTG-A-AA-GAAG-AGAATTCATAATGAGAAGAACTTGTTAT
10020651 TTTT-TTTG-ATTCATCATTTGATGGATCAACATTGCCATGTAGA-TTCATAATGA-AAGAACTC
62 TTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCATGTAGAGTTCATAATGAGAAGAACTC
10020712 GTCATCTGAAGAAGAAAG-A-AAATTCATAATGAGAAGAA-TT-TTCAACCTTTTGCTCAAATCC
127 GTCATCT-AAGAAGAAAGAAGAAATTCATAATGAGAAGAATTTGTTC-ACCTTTTGCTCAAATCC
10020773 ATCACTTGAT-GATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACAAATCTGAAGAAGGAA
190 ATCACTTGATGGATCAACTTTTCCAGAG-AAGTTCATAATGAGAAGAACAAATCTGAAGAA-GAA
10020837 GAAAGTTCATAATGAGAAGAATTTGTTC-ACCTTTTG-TT-AA-TC-TCATTTGATGGATCAACA
253 G-AAGTTCATAAT-----GAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCAACA
* ** *
10020897 TTGCCAGGTAGAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTCAA-AACCATCACTTGAT
312 TTGCCAGGTAGA-TTCATAATGAGAAGAAC-TG-TCAA------G-ACAAGAA--AGAACTTCAT
* * * * * * * *
10020961 G-GATCAGCTT-TTCCAGAGAAAGTTC-ATA-ATGA-GAAGAATCATCTGAAGAAGA-AGA
365 GAGAACAACTTGTTCAACAGAAAGTTCAAAACATCACGAAGAATCAGCTGAACAAGAGA-A
* *
10021016 AGTTCATAATGAGAAGAACTCATCTGAAAGAAGA-AATTCATAATGAGAAGAATTTGTTCAACAT
1 AGTTCATAATGAGAAGAACTCATCTGAAAGAAGAGAATTCATAATGAGAAGAACTTGTT--A-TT
* * * * * * * *
10021080 TTTG-TTCAATCCATCACTTGATAGATTAGCTTTTCCA-G-AGAAAGTTCATAATGAGAAGAA--
63 TTTGTTTGAATTCATCATTTGATGGATCAACATTGCCATGTAG--AGTTCATAATGAGAAGAACT
*
10021140 C-TCATCT--GAAG-AAGAAGAAGTTCATAATGAGAAGAA
126 CGTCATCTAAGAAGAAAGAAGAAATTCATAATGAGAAGAA
10021176 CTCATCTGAA
Statistics
Matches: 507, Mismatches: 42, Indels: 85
0.80 0.07 0.13
Matches are distributed among these distances:
421 19 0.04
422 61 0.12
423 23 0.05
424 82 0.16
425 45 0.09
426 60 0.12
427 14 0.03
428 28 0.06
429 73 0.14
430 10 0.02
431 34 0.07
432 23 0.05
433 11 0.02
434 14 0.03
435 10 0.02
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (424 bp):
AGTTCATAATGAGAAGAACTCATCTGAAAGAAGAGAATTCATAATGAGAAGAACTTGTTATTTTT
GTTTGAATTCATCATTTGATGGATCAACATTGCCATGTAGAGTTCATAATGAGAAGAACTCGTCA
TCTAAGAAGAAAGAAGAAATTCATAATGAGAAGAATTTGTTCACCTTTTGCTCAAATCCATCACT
TGATGGATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACAAATCTGAAGAAGAAGAAGTTCA
TAATGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGATT
CATAATGAGAAGAACTGTCAAGACAAGAAAGAACTTCATGAGAACAACTTGTTCAACAGAAAGTT
CAAAACATCACGAAGAATCAGCTGAACAAGAGAA
Found at i:10021101 original size:141 final size:145
Alignment explanation
Indices: 10020910--10021226 Score: 511
Period size: 142 Copynumber: 2.2 Consensus size: 145
10020900 CCAGGTAGAG
* *
10020910 TTCATAATGAGAAGAACTTGTTCAACTTTTTGTTCAAAACCATCACTTGATGGATCAGCTTTTCC
1 TTCATAATGAGAAGAACTTGTTCAACATTTTGTTCAAAACCATCACTTGATAGATCAGCTTTTCC
10020975 AGAGAAAGTTCATAATGAGAAGAA-TCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTCAT
66 AGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTCAT
10021039 CTG-A-AAGAAGAAA
131 CTGAAGAAGAAGAAA
* * *
10021052 TTCATAATGAGAAGAATTTGTTCAACATTTTGTTC-AATCCATCACTTGATAGATTAGCTTTTCC
1 TTCATAATGAGAAGAACTTGTTCAACATTTTGTTCAAAACCATCACTTGATAGATCAGCTTTTCC
10021116 AGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTCAT
66 AGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTCAT
*
10021181 CTGAAGAAGAAGAAG
131 CTGAAGAAGAAGAAA
* * *
10021196 TTCA-CATGA-AAGAGCTTGTTCAACCTTTTGT
1 TTCATAATGAGAAGAACTTGTTCAACATTTTGT
10021227 ATAATTCTAT
Statistics
Matches: 162, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
141 50 0.31
142 95 0.59
143 5 0.03
144 12 0.07
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (145 bp):
TTCATAATGAGAAGAACTTGTTCAACATTTTGTTCAAAACCATCACTTGATAGATCAGCTTTTCC
AGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTCAT
CTGAAGAAGAAGAAA
Found at i:10021161 original size:36 final size:36
Alignment explanation
Indices: 10021121--10021199 Score: 158
Period size: 36 Copynumber: 2.2 Consensus size: 36
10021111 TTTCCAGAGA
10021121 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
10021157 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
10021193 AAGTTCA
1 AAGTTCA
10021200 CATGAAAGAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.47, C:0.11, G:0.22, T:0.20
Consensus pattern (36 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
Found at i:10021302 original size:115 final size:115
Alignment explanation
Indices: 10021157--10021424 Score: 317
Period size: 119 Copynumber: 2.3 Consensus size: 115
10021147 GAAGAAGAAG
* *
10021157 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCACATGA-AAGAGCTTGTTCAACC
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCA-ATAAGAAGAGCTTATTCAACC
* * * * * **
10021221 TTTTGTATAATTCTATCACAGAAGCAGATA-TTAGCATCAACTTTCCAG-AGA
65 TTTTGAATAACTCTATCACAGAAGCAAATAGTCAACATC-A-TCCCCAGCAGA
*
10021272 AAGTTCATAATGAAAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCAATAAGAAGAGCTTATTCA
1 AAGTTCATAATGAGAAGAACTCATCT---GAAG-AAGAAGAAGTTCAATAAGAAGAGCTTATTCA
* * *
10021337 ACCTTTTGAATGACTCTATCACAGAAGGAAATAGGTCAACATCATCCCCAGCGGA
62 ACCTTTTGAATAACTCTATCACAGAAGCAAATA-GTCAACATCATCCCCAGCAGA
10021392 AAGTTCATAATGAGAAGAAACTCATCTGAAGAA
1 AAGTTCATAATGAGAAG-AACTCATCTGAAGAA
10021425 AGAGAAGAAT
Statistics
Matches: 130, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
115 25 0.19
117 2 0.02
118 11 0.08
119 58 0.45
120 19 0.15
121 15 0.12
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.24
Consensus pattern (115 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCAATAAGAAGAGCTTATTCAACCT
TTTGAATAACTCTATCACAGAAGCAAATAGTCAACATCATCCCCAGCAGA
Found at i:10021583 original size:3 final size:3
Alignment explanation
Indices: 10021563--10021631 Score: 79
Period size: 3 Copynumber: 22.7 Consensus size: 3
10021553 TTCATTTAAA
*
10021563 TAT TA- TAT TAT TAG TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
*
10021610 TAT ATAT TAT TAAA TAT TAT TA
1 TAT -TAT TAT T-AT TAT TAT TA
10021632 CAAGCCCAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
2 4 0.07
3 45 0.79
4 8 0.14
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:10021588 original size:20 final size:18
Alignment explanation
Indices: 10021563--10021621 Score: 75
Period size: 20 Copynumber: 3.1 Consensus size: 18
10021553 TTCATTTAAA
10021563 TATTATATTATTAGTATTAT
1 TATTATATTA-TA-TATTAT
10021583 TATTATTATTATATTATTAT
1 TATTA-TATTATA-TATTAT
10021603 TATTAT-TTATATATTAT
1 TATTATATTATATATTAT
10021620 TA
1 TA
10021622 AATATTATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
17 8 0.22
18 5 0.14
19 1 0.03
20 18 0.49
21 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
TATTATATTATATATTAT
Found at i:10021617 original size:17 final size:17
Alignment explanation
Indices: 10021563--10021621 Score: 86
Period size: 17 Copynumber: 3.5 Consensus size: 17
10021553 TTCATTTAAA
10021563 TATTA-TATTATTAGTAT
1 TATTATTATTATTA-TAT
10021580 TATTATTATTATTATAT
1 TATTATTATTATTATAT
10021597 TATTATTATTATT-TAT
1 TATTATTATTATTATAT
10021613 ATATTATTA
1 -TATTATTA
10021622 AATATTATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
16 3 0.08
17 29 0.73
18 8 0.20
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
TATTATTATTATTATAT
Found at i:10021629 original size:17 final size:16
Alignment explanation
Indices: 10021558--10021631 Score: 77
Period size: 17 Copynumber: 4.8 Consensus size: 16
10021548 CATTTTTCAT
10021558 TTAAATATTA-TATTA
1 TTAAATATTATTATTA
*
10021573 TT-AGTATTATTATTA
1 TTAAATATTATTATTA
*
10021588 TTATTATATTATTATTA
1 TTA-AATATTATTATTA
10021605 TT--AT-TTATATATTA
1 TTAAATATTAT-TATTA
10021619 TTAAATATTATTA
1 TTAAATATTATTA
10021632 CAAGCCCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
13 4 0.08
14 15 0.31
15 9 0.18
16 4 0.08
17 17 0.35
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (16 bp):
TTAAATATTATTATTA
Found at i:10023071 original size:16 final size:16
Alignment explanation
Indices: 10023050--10023095 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
10023040 TCTTTCAAAT
10023050 TTTTTATTACTTATT-A
1 TTTTTATTA-TTATTAA
10023066 TTTTTATATATTATTAA
1 TTTTTAT-TATTATTAA
10023083 TTTTTATT-TTATT
1 TTTTTATTATTATT
10023096 TGTTTGTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 5 0.18
16 13 0.46
17 10 0.36
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTTATTATTATTAA
Found at i:10027253 original size:13 final size:14
Alignment explanation
Indices: 10027220--10027253 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
10027210 AAGGTATATT
*
10027220 CTATAATATTTTTA
1 CTATTATATTTTTA
10027234 CTATTATATTTTTA
1 CTATTATATTTTTA
10027248 CT-TTAT
1 CTATTAT
10027254 TTAATATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (14 bp):
CTATTATATTTTTA
Found at i:10028496 original size:373 final size:373
Alignment explanation
Indices: 10027811--10028497 Score: 1338
Period size: 373 Copynumber: 1.8 Consensus size: 373
10027801 TGCACCTGGG
*
10027811 GCTTCCGGTTCTTGGACTACTTTGTGTCGGGATAGTCTATGACGTGTCCCGGAAAATTTTATCGG
1 GCTTCCGGTTCTTGGACTACTTTGTGTCGGGATAGTCTATGACGTGTCCCGAAAAATTTTATCGG
10027876 ATGTAGGATACCGTTAAATTGGTTAGATGCCAATTTTCGGGAGTTGAGCGCAGACGCCTCTGAGG
66 ATGTAGGATACCGTTAAATTGGTTAGATGCCAATTTTCGGGAGTTGAGCGCAGACGCCTCTGAGG
10027941 ATGAGGTTAAGATGTATGCACGGGCATGCATACTGCAACTGATAGGAGGGTTGCTGATGCCGGAC
131 ATGAGGTTAAGATGTATGCACGGGCATGCATACTGCAACTGATAGGAGGGTTGCTGATGCCGGAC
*
10028006 AAATCGCGCAACCTAGTTCACTGCATGTTGTTGCGATATCTTAGCGACTTTCGTCTCGCCTGATC
196 AAATCGCGCAACCTAGTTCACTGCATGTGGTTGCGATATCTTAGCGACTTTCGTCTCGCCTGATC
10028071 ATTCAGTTGGGGCTCGACAATTTTGACTTTGCTGTACAGGGAGATGTGTGGAGCTTGAGGATGTT
261 ATTCAGTTGGGGCTCGACAATTTTGACTTTGCTGTACAGGGAGATGTGTGGAGCTTGAGGATGTT
10028136 TCTATGCACCTGGGGCTTCCGGTGGAGGGAGATGTGATATCGATGATA
326 TCTATGCACCTGGGGCTTCCGGTGGAGGGAGATGTGATATCGATGATA
*
10028184 GCTTCCGGTTCTTGGACTACTTTTTGTCGGGATAGTCTATGACGTGTCCCGAAAAATTTTATCGG
1 GCTTCCGGTTCTTGGACTACTTTGTGTCGGGATAGTCTATGACGTGTCCCGAAAAATTTTATCGG
10028249 ATGTAGGATACCGTTAAATTGGTTAGATGCCAATTTTCGGGAGTTGAGCGCAGACGCCTCTGAGG
66 ATGTAGGATACCGTTAAATTGGTTAGATGCCAATTTTCGGGAGTTGAGCGCAGACGCCTCTGAGG
*
10028314 ATGAGGTTAAGATGTATGCACGGGCATGCATACTGCAACTGATAGTAGGGTTGCTGATGCCGGAC
131 ATGAGGTTAAGATGTATGCACGGGCATGCATACTGCAACTGATAGGAGGGTTGCTGATGCCGGAC
10028379 AAATCGCGCAACCTAGTTCACTGCATGTGGTTGCGATATCTTAGCGACTTTCGTCTCGCCTGATC
196 AAATCGCGCAACCTAGTTCACTGCATGTGGTTGCGATATCTTAGCGACTTTCGTCTCGCCTGATC
10028444 ATTCAGTTGGGGCTCGACAATTTTGACTTTGCTGTACAGGGAGATGTGTGGAGC
261 ATTCAGTTGGGGCTCGACAATTTTGACTTTGCTGTACAGGGAGATGTGTGGAGC
10028498 CACTGACTAC
Statistics
Matches: 310, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
373 310 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (373 bp):
GCTTCCGGTTCTTGGACTACTTTGTGTCGGGATAGTCTATGACGTGTCCCGAAAAATTTTATCGG
ATGTAGGATACCGTTAAATTGGTTAGATGCCAATTTTCGGGAGTTGAGCGCAGACGCCTCTGAGG
ATGAGGTTAAGATGTATGCACGGGCATGCATACTGCAACTGATAGGAGGGTTGCTGATGCCGGAC
AAATCGCGCAACCTAGTTCACTGCATGTGGTTGCGATATCTTAGCGACTTTCGTCTCGCCTGATC
ATTCAGTTGGGGCTCGACAATTTTGACTTTGCTGTACAGGGAGATGTGTGGAGCTTGAGGATGTT
TCTATGCACCTGGGGCTTCCGGTGGAGGGAGATGTGATATCGATGATA
Found at i:10047885 original size:86 final size:86
Alignment explanation
Indices: 10047740--10047912 Score: 265
Period size: 86 Copynumber: 2.0 Consensus size: 86
10047730 TTCATTTTTA
* * * *
10047740 GTGCAAGGTACATTCAAGGAAGTCCAATGGACAGTGCATGACAGTAAGATTGATCGCCACTTTTG
1 GTGCAAGGTACATTCAAGGAAGTCCAATGGAAAGTGAACGACAGTAAGAGTGATCGCCACTTTTG
*
10047805 AACATGTTACAAGCATCTTTG
66 AACATGTTACAAGCATATTTG
* * * *
10047826 GTGCAATGTATATTCAAGGCAGTCCAATGGAAAGTGAACGACAGTCAGAGTGATCGCCACTTTTG
1 GTGCAAGGTACATTCAAGGAAGTCCAATGGAAAGTGAACGACAGTAAGAGTGATCGCCACTTTTG
10047891 AACATGTTACAAGCATATTTG
66 AACATGTTACAAGCATATTTG
10047912 G
1 G
10047913 GCATTCAAGT
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 78 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (86 bp):
GTGCAAGGTACATTCAAGGAAGTCCAATGGAAAGTGAACGACAGTAAGAGTGATCGCCACTTTTG
AACATGTTACAAGCATATTTG
Found at i:10048174 original size:30 final size:30
Alignment explanation
Indices: 10048140--10048212 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
10048130 GGACAGCTTG
*
10048140 GTGGAGCACTTGGAAAATATATACAACTTA
1 GTGGAGCATTTGGAAAATATATACAACTTA
* * *
10048170 GTGGAGCATTTGGAAGATATATAGAGCTTA
1 GTGGAGCATTTGGAAAATATATACAACTTA
10048200 GTGGAGCATTTGG
1 GTGGAGCATTTGG
10048213 GAGACATTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (30 bp):
GTGGAGCATTTGGAAAATATATACAACTTA
Found at i:10050035 original size:20 final size:20
Alignment explanation
Indices: 10050010--10050048 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
10050000 AGAATATGCA
10050010 GGGGGTA-CAGATTCCCCCTG
1 GGGGGTATC-GATTCCCCCTG
10050030 GGGGGTATCGATTCCCCCT
1 GGGGGTATCGATTCCCCCT
10050049 AAATGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.13, C:0.31, G:0.33, T:0.23
Consensus pattern (20 bp):
GGGGGTATCGATTCCCCCTG
Found at i:10064780 original size:13 final size:13
Alignment explanation
Indices: 10064762--10064808 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
10064752 ATCAGTGACT
10064762 GGGTCGGGCATGC
1 GGGTCGGGCATGC
10064775 GGGTCGGGCATGC
1 GGGTCGGGCATGC
* *
10064788 GGGTCGGTTCAAGC
1 GGGTCGG-GCATGC
10064802 GGGTCGG
1 GGGTCGG
10064809 ATCGAACATG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
13 20 0.65
14 11 0.35
ACGTcount: A:0.09, C:0.21, G:0.53, T:0.17
Consensus pattern (13 bp):
GGGTCGGGCATGC
Found at i:10065687 original size:55 final size:57
Alignment explanation
Indices: 10065619--10065748 Score: 156
Period size: 56 Copynumber: 2.3 Consensus size: 57
10065609 TTAAGTCAAA
** * * *
10065619 TTAAAAAATTTCAAGTTATTCGAGTTGA-CAGTCTGATTTTATAACTT-AATTTGATT
1 TTAAAAAA-TTCAAGTTATTAAAATTGATAAATCTGATTTTATAACTTAAATTTGATT
*
10065675 TTAAAAAATTCAAGTTATTAAAATTGATAAATCTTATTTTATAACTTAAATTTGATT
1 TTAAAAAATTCAAGTTATTAAAATTGATAAATCTGATTTTATAACTTAAATTTGATT
*
10065732 TGAAATATAATTCAAGT
1 TTAAA-A-AATTCAAGT
10065749 ACAGTTGAGT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
55 16 0.25
56 24 0.38
57 13 0.21
58 1 0.02
59 9 0.14
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (57 bp):
TTAAAAAATTCAAGTTATTAAAATTGATAAATCTGATTTTATAACTTAAATTTGATT
Found at i:10066155 original size:25 final size:27
Alignment explanation
Indices: 10066121--10066175 Score: 78
Period size: 25 Copynumber: 2.1 Consensus size: 27
10066111 AATCTTTCCC
10066121 TTAAATTTTTAAA-AT-TATATATAGT
1 TTAAATTTTTAAATATATATATATAGT
* *
10066146 TTAATTTTTTAAATATATATATATATT
1 TTAAATTTTTAAATATATATATATAGT
10066173 TTA
1 TTA
10066176 TAAATAATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 12 0.46
26 2 0.08
27 12 0.46
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (27 bp):
TTAAATTTTTAAATATATATATATAGT
Found at i:10066163 original size:21 final size:21
Alignment explanation
Indices: 10066127--10066181 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 21
10066117 TCCCTTAAAT
*
10066127 TTTTA-AAATTATATATAGTTTAA
1 TTTTATAAA-TATATATA-TAT-A
*
10066150 TTTTTTAAATATATATATATA
1 TTTTATAAATATATATATATA
10066171 TTTTATAAATA
1 TTTTATAAATA
10066182 ATGTACTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 11 0.39
22 2 0.07
23 12 0.43
24 3 0.11
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
TTTTATAAATATATATATATA
Found at i:10068769 original size:183 final size:183
Alignment explanation
Indices: 10068461--10068810 Score: 628
Period size: 183 Copynumber: 1.9 Consensus size: 183
10068451 ATTAAATCCG
10068461 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
* * *
10068526 ATATATTACATTCAAACCATGACATTGTTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
66 ATAGATTAAATTCAAACCATGACATTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
*
10068591 TTGTCAGGCCAAAGACTTTGTGATGACACGAACCCTTTAGTGATTTGTCCCTC
131 TTGTCAGGCCAAAGACTTTGTGATGACACAAACCCTTTAGTGATTTGTCCCTC
* * *
10068644 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTTGGAATCCCTGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
10068709 ATAGATTAAATTCAAACCATGACATTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
66 ATAGATTAAATTCAAACCATGACATTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
*
10068774 TTGTCAGGCCAAAGACTTTGTGATGAGACAAACCCTT
131 TTGTCAGGCCAAAGACTTTGTGATGACACAAACCCTT
10068811 CAGTTAAACT
Statistics
Matches: 159, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
183 159 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (183 bp):
TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
ATAGATTAAATTCAAACCATGACATTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
TTGTCAGGCCAAAGACTTTGTGATGACACAAACCCTTTAGTGATTTGTCCCTC
Found at i:10069919 original size:36 final size:36
Alignment explanation
Indices: 10069877--10069996 Score: 120
Period size: 36 Copynumber: 3.3 Consensus size: 36
10069867 CAGATGATTA
*
10069877 TCTCACTTGAGATTGTTTTTCTTAAAACATACTTTG
1 TCTCACTTGAGATTGTTTTTCTTAAAACAGACTTTG
* * * *
10069913 TCTCACTTGAGACTGTTTTACTCGAAAGA-AGA-TTTA
1 TCTCACTTGAGATTGTTTTTCT-TAAA-ACAGACTTTG
* * *
10069949 TTTCACTCT-AGTTTGCTTTTCTTAAAACAGACTTTG
1 TCTCACT-TGAGATTGTTTTTCTTAAAACAGACTTTG
10069985 TCTCACTTGAGA
1 TCTCACTTGAGA
10069997 CCATTTTCAC
Statistics
Matches: 64, Mismatches: 14, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
34 1 0.02
35 7 0.11
36 49 0.77
37 6 0.09
38 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.42
Consensus pattern (36 bp):
TCTCACTTGAGATTGTTTTTCTTAAAACAGACTTTG
Found at i:10069975 original size:72 final size:75
Alignment explanation
Indices: 10069893--10070032 Score: 223
Period size: 72 Copynumber: 1.9 Consensus size: 75
10069883 TTGAGATTGT
* **
10069893 TTTTCTTAAAACATACTTTGTCTCACTTGAGACTGTTTT-ACTCGAAAGAAG-ATTT-ATTTCAC
1 TTTTCTTAAAACAGACTTTGTCTCACTTGAGACCATTTTCACTCGAAAGAAGAATTTCATTTCAC
10069955 TCTAGTTTGC
66 TCTAGTTTGC
10069965 TTTTCTTAAAACAGACTTTGTCTCACTTGAGACCATTTTCACTCGAAAGAAGACATTTCATTTCA
1 TTTTCTTAAAACAGACTTTGTCTCACTTGAGACCATTTTCACTCGAAAGAAGA-ATTTCATTTCA
10070030 CTC
65 CTC
10070033 AAGACTGTTT
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
72 36 0.59
73 12 0.20
75 4 0.07
76 9 0.15
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (75 bp):
TTTTCTTAAAACAGACTTTGTCTCACTTGAGACCATTTTCACTCGAAAGAAGAATTTCATTTCAC
TCTAGTTTGC
Found at i:10070230 original size:65 final size:65
Alignment explanation
Indices: 10070112--10070266 Score: 179
Period size: 65 Copynumber: 2.4 Consensus size: 65
10070102 TAGAACTAGG
* **
10070112 TTTCATCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAA
1 TTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAACAAA
* * * * *
10070177 TTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACA-AAATCTTTG-AATCTGTTTCCCTTGAAACA
1 TTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAA-CATTGAAAAC-ATTTCCCTTGAAACA
10070240 AA
64 AA
* * *
10070242 TTTCGTCTCCCTTGTGACATTTTCT
1 TTTCGTCTCTCTTGAGACAGTTTCT
10070267 TTTGGAACTA
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
64 6 0.08
65 69 0.92
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.41
Consensus pattern (65 bp):
TTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAACAAA
Found at i:10070340 original size:167 final size:167
Alignment explanation
Indices: 10070064--10070379 Score: 533
Period size: 167 Copynumber: 1.9 Consensus size: 167
10070054 TTTTGTCTGT
* *
10070064 CTTGAAACAAATTTCTTCTCCCTTGAGACATTTTCTTTTAGAACTAGGTTTCATCTCTCTTGAGA
1 CTTGAAACAAATTTCGTCTCCCTTGAGACATTTTCTTTTAGAACTAAGTTTCATCTCTCTTGAGA
* *
10070129 CAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGA
66 CAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTGTCACTCATGAGA
* *
10070194 TAGTTTCTCTTGAAACAAAATCTTTGAATCTGTTTCC
131 CAGTTTCCCTTGAAACAAAATCTTTGAATCTGTTTCC
* * **
10070231 CTTGAAACAAATTTCGTCTCCCTTGTGACATTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGA
1 CTTGAAACAAATTTCGTCTCCCTTGAGACATTTTCTTTTAGAACTAAGTTTCATCTCTCTTGAGA
*
10070296 TAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTGTCACTCATGAGA
66 CAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTGTCACTCATGAGA
10070361 CAGTTTCCCTTGAAACAAA
131 CAGTTTCCCTTGAAACAAA
10070380 TTTTGTCTCC
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
167 138 1.00
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.39
Consensus pattern (167 bp):
CTTGAAACAAATTTCGTCTCCCTTGAGACATTTTCTTTTAGAACTAAGTTTCATCTCTCTTGAGA
CAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTGTCACTCATGAGA
CAGTTTCCCTTGAAACAAAATCTTTGAATCTGTTTCC
Found at i:10070375 original size:36 final size:36
Alignment explanation
Indices: 10070328--10070408 Score: 108
Period size: 36 Copynumber: 2.2 Consensus size: 36
10070318 ATTGAAAACA
** *
10070328 TTTCCCTTGAAATGAATTTTGTCACTCATGAGACAG
1 TTTCCCTTGAAACAAATTTTGTCACCCATGAGACAG
* *
10070364 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAATTTTGTCACCCATGAGACAG
*
10070400 TTTCTCTTG
1 TTTCCCTTG
10070409 TAGCATAAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (36 bp):
TTTCCCTTGAAACAAATTTTGTCACCCATGAGACAG
Found at i:10070416 original size:101 final size:101
Alignment explanation
Indices: 10070161--10070445 Score: 322
Period size: 102 Copynumber: 2.8 Consensus size: 101
10070151 ATTGAAAACA
** *
10070161 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACA-AAATCTTTG-AATC
1 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAA-CTTTGAAAAC
* * * * *
10070224 TGTTTCCCTTGAAACAAATTTCGTCTCCCTTGTGACAT
65 -ATTTCCCTTGAAACAAATTTCGTCACCCATGAGACAG
** * * *
10070262 TTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTGAAAAC
1 TTTCCCTTGAAAC-AAATTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACTTTGAAAAC
** * *
10070327 ATTTCCCTTGAAATGAATTTTGTCACTCATGAGACAG
65 ATTTCCCTTGAAACAAATTTCGTCACCCATGAGACAG
* * * *
10070364 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGTAGCATAAACTTTGAAAACA
1 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACTTTGAAAACA
*
10070429 GTTTCCTTTGAAACAAA
66 -TTTCCCTTGAAACAAA
10070446 ATCTTTGAAT
Statistics
Matches: 151, Mismatches: 29, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
101 55 0.36
102 90 0.60
103 6 0.04
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.39
Consensus pattern (101 bp):
TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACTTTGAAAACA
TTTCCCTTGAAACAAATTTCGTCACCCATGAGACAG
Found at i:10070530 original size:21 final size:21
Alignment explanation
Indices: 10070506--10070567 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
10070496 TTCTTTTGGA
10070506 AGTTTTTGTCTCTCTTGAGAC
1 AGTTTTTGTCTCTCTTGAGAC
*
10070527 AG----T-T-TCTCTTGAAAC
1 AGTTTTTGTCTCTCTTGAGAC
**
10070542 AAATTTTGTCTCTCTTGAGAC
1 AGTTTTTGTCTCTCTTGAGAC
10070563 AGTTT
1 AGTTT
10070568 CCCTTGAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 12
0.64 0.11 0.26
Matches are distributed among these distances:
15 11 0.37
16 1 0.03
17 1 0.03
19 1 0.03
20 1 0.03
21 15 0.50
ACGTcount: A:0.21, C:0.18, G:0.16, T:0.45
Consensus pattern (21 bp):
AGTTTTTGTCTCTCTTGAGAC
Found at i:10070556 original size:36 final size:36
Alignment explanation
Indices: 10070468--10070577 Score: 134
Period size: 36 Copynumber: 3.1 Consensus size: 36
10070458 GTTTTACGTT
* * * *
10070468 AAACAAATCTTGTATCCCTTGAGACAGTTTCTTTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
* **
10070504 -GA-AGTTTTTGTCTCTCTTGAGACAGTTTCTCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
*
10070538 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
10070574 AAAC
1 AAAC
10070578 TTCAATCTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
34 26 0.43
35 2 0.03
36 33 0.54
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (36 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
Found at i:10070658 original size:36 final size:35
Alignment explanation
Indices: 10070595--10070679 Score: 129
Period size: 36 Copynumber: 2.5 Consensus size: 35
10070585 TTTGAATACA
* *
10070595 GTTTCTCTTG-AA-ACATAAAAAACCTTTGAAATT
1 GTTTCTCTTGAAACACAAAAAAAACCTTTGAAAAT
10070628 GTTTCTCTTGAAACACAAAAAAAAACCTTTGAAAAT
1 GTTTCTCTTGAAACAC-AAAAAAAACCTTTGAAAAT
10070664 GTTTCTCTTGAAACAC
1 GTTTCTCTTGAAACAC
10070680 CAAACCCTCG
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
33 10 0.21
34 2 0.04
35 2 0.04
36 33 0.70
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (35 bp):
GTTTCTCTTGAAACACAAAAAAAACCTTTGAAAAT
Found at i:10070825 original size:84 final size:85
Alignment explanation
Indices: 10070687--10070844 Score: 201
Period size: 84 Copynumber: 1.9 Consensus size: 85
10070677 CACCAAACCC
* * * * * *
10070687 TCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAACATACCTCAAGGCTAGAATGGT
1 TCGAGTTCGACTACACTCAGCTTCGAAGGCACATCATTTACAACATACCTCAAGGCAAGAAGGGA
10070752 TATCTGTCACCAAAAGACCT
66 TATCTGTCACCAAAAGACCT
** * ** *
10070772 TCGAGTTCGACTATGCTCAGC-TCTAAGGCACATCATTTACAGTATAGCTCAAGGCAAGAAGGGA
1 TCGAGTTCGACTACACTCAGCTTCGAAGGCACATCATTTACAACATACCTCAAGGCAAGAAGGGA
10070836 TATCTGTCA
66 TATCTGTCA
10070845 ATAAAATTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
84 43 0.70
85 18 0.30
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (85 bp):
TCGAGTTCGACTACACTCAGCTTCGAAGGCACATCATTTACAACATACCTCAAGGCAAGAAGGGA
TATCTGTCACCAAAAGACCT
Found at i:10075032 original size:15 final size:15
Alignment explanation
Indices: 10074997--10075042 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
10074987 AGTTTTAATA
10074997 ATATTTTTTGCAATTT
1 ATATTTTTT-CAATTT
10075013 A-ATTTTTT-AATTTT
1 ATATTTTTTCAA-TTT
10075027 ATATTTTATTCAATTT
1 ATATTTT-TTCAATTT
10075043 GATCCTTCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
13 2 0.08
14 4 0.15
15 12 0.46
16 6 0.23
17 2 0.08
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.65
Consensus pattern (15 bp):
ATATTTTTTCAATTT
Found at i:10079214 original size:12 final size:12
Alignment explanation
Indices: 10079197--10079227 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
10079187 ACTATATGGT
10079197 ATGAACAACACC
1 ATGAACAACACC
*
10079209 ATGAACAATACC
1 ATGAACAACACC
10079221 ATGAACA
1 ATGAACA
10079228 GTGAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.52, C:0.26, G:0.10, T:0.13
Consensus pattern (12 bp):
ATGAACAACACC
Found at i:10079281 original size:21 final size:21
Alignment explanation
Indices: 10079255--10079294 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
10079245 TAAATTATGT
10079255 ATCGATGCACTGCTACAGTGC
1 ATCGATGCACTGCTACAGTGC
10079276 ATCGATGCACTGCTACAGT
1 ATCGATGCACTGCTACAGT
10079295 ATTTTCATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (21 bp):
ATCGATGCACTGCTACAGTGC
Found at i:10079914 original size:31 final size:31
Alignment explanation
Indices: 10079843--10080022 Score: 256
Period size: 31 Copynumber: 5.8 Consensus size: 31
10079833 CCCGAAAGAC
* *
10079843 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
10079874 CA-TCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
10079904 CAGTCCATATGTCCCGAAAAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* *
10079935 CAGTCCATATGTCCCGAAAAACATAGGTAAG
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* *
10079966 CAGTCCATATGTCCTGAAGAACATAGGAAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* *
10079997 CAATCCATATATCCCGAAGAACATAG
1 CAGTCCATATGTCCCGAAGAACATAG
10080023 ATAACCCTCG
Statistics
Matches: 136, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
30 26 0.19
31 110 0.81
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:10080438 original size:12 final size:12
Alignment explanation
Indices: 10080421--10080445 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10080411 CACTTAATCT
10080421 TATACATTCACA
1 TATACATTCACA
10080433 TATACATTCACA
1 TATACATTCACA
10080445 T
1 T
10080446 CACATATTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (12 bp):
TATACATTCACA
Found at i:10080522 original size:19 final size:19
Alignment explanation
Indices: 10080494--10080541 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
10080484 ATGTCATTTT
*
10080494 ACATATACCCTTTCATATC
1 ACATAAACCCTTTCATATC
*
10080513 ACTTAAACCCTTTCATATC
1 ACATAAACCCTTTCATATC
10080532 ACATAAACCC
1 ACATAAACCC
10080542 ATATCTTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.35, C:0.33, G:0.00, T:0.31
Consensus pattern (19 bp):
ACATAAACCCTTTCATATC
Found at i:10089677 original size:22 final size:22
Alignment explanation
Indices: 10089651--10089732 Score: 96
Period size: 22 Copynumber: 3.8 Consensus size: 22
10089641 TTGGTGCAGA
*
10089651 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATACCCCCTTGAAG
*
10089673 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATACCCCC-TTGAAG
*
10089696 GGGAACCGAT-TCCCCTTG-AG
1 GGGAACCGATACCCCCTTGAAG
**
10089716 GGGAATTGATACCCCCT
1 GGGAACCGATACCCCCT
10089733 GGGGTTCTGT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
20 10 0.19
21 8 0.15
22 18 0.35
23 16 0.31
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (22 bp):
GGGAACCGATACCCCCTTGAAG
Found at i:10089693 original size:23 final size:22
Alignment explanation
Indices: 10089651--10089720 Score: 99
Period size: 22 Copynumber: 3.2 Consensus size: 22
10089641 TTGGTGCAGA
* *
10089651 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATTCCCCCTTGAAG
10089673 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCC-TTGAAG
10089696 GGGAACCGATT-CCCCTTG-AG
1 GGGAACCGATTCCCCCTTGAAG
10089716 GGGAA
1 GGGAA
10089721 TTGATACCCC
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.16
21 3 0.07
22 18 0.40
23 17 0.38
ACGTcount: A:0.24, C:0.27, G:0.30, T:0.19
Consensus pattern (22 bp):
GGGAACCGATTCCCCCTTGAAG
Found at i:10091202 original size:18 final size:18
Alignment explanation
Indices: 10091167--10091205 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
10091157 TGAGCAGCAC
*
10091167 GAGGAACAAGCACCTCCA
1 GAGGAACAACCACCTCCA
* *
10091185 GAGGAACAACCTCGTCCA
1 GAGGAACAACCACCTCCA
10091203 GAG
1 GAG
10091206 TATCAAATGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.31, G:0.26, T:0.08
Consensus pattern (18 bp):
GAGGAACAACCACCTCCA
Found at i:10100610 original size:202 final size:203
Alignment explanation
Indices: 10100209--10100689 Score: 781
Period size: 202 Copynumber: 2.4 Consensus size: 203
10100199 ATTGAAAATG
10100209 GTCCAATGGTTTTGTGCATGAAGAACAAGCTAAAATGGCGTGATAGGCATGTTCGAGGGGTATTT
1 GTCCAATGGTTTTGTGCATGAAG-ACAAGCTAAAATGGCGTGATAGGCATGTTCGAGGGGTATTT
*
10100274 TTGGGAAGTTAATAAAAAATATTTTGTAATTTTTAAGCTTAAAGGCGTAGTATTACAACTTATCT
65 TTGGGAAGTTAATAAAAAATATTTTGTAATTTTTAAGCTTAAAGGCATAGTATTACAACTTATCT
* * *
10100339 TTCAGTTGAGGGTAATATCAACAAACAACATACTTTGTAAGTGGGGTAAAAATCGCGTCGAAAAT
130 TTCAGTTGAGGGTAATATCAACAAACAACAGACATTGTAAGTGGGATAAAAATCGCGTCGAAAAT
10100404 GGTTCCAAA
195 GGTTCCAAA
*
10100413 GTCCAGTGGTTTTGTGCATGAAGACAAGCTAAAATGGCGTGATAGGCATGTTCGAGGGGTATTTT
1 GTCCAATGGTTTTGTGCATGAAGACAAGCTAAAATGGCGTGATAGGCATGTTCGAGGGGTATTTT
*
10100478 TGGGAAGTTAATAAAAAATATTTTGTAATTTTTAAGC-TATAGGCATAGTATTACAACTTATCTT
66 TGGGAAGTTAATAAAAAATATTTTGTAATTTTTAAGCTTAAAGGCATAGTATTACAACTTATCTT
*
10100542 TCAGTTGAGGGTAATATCAACAAACACCAGACATTGTAAGTGGGATAAAAATCGCGTCGAAAATG
131 TCAGTTGAGGGTAATATCAACAAACAACAGACATTGTAAGTGGGATAAAAATCGCGTCGAAAATG
10100607 GTTCCAAA
196 GTTCCAAA
* * * * * *
10100615 G--C-TTGGTTTTATGCATGAACAACAAGCTAAAATAGCTTGATATGCATGTTCGAGGGGTATTT
1 GTCCAATGGTTTTGTGCATGAA-GACAAGCTAAAATGGCGTGATAGGCATGTTCGAGGGGTATTT
* *
10100677 TTAGGAATTTAAT
65 TTGGGAAGTTAAT
10100690 CAAATTGTTT
Statistics
Matches: 261, Mismatches: 15, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
199 15 0.06
200 50 0.19
202 95 0.36
203 79 0.30
204 22 0.08
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.32
Consensus pattern (203 bp):
GTCCAATGGTTTTGTGCATGAAGACAAGCTAAAATGGCGTGATAGGCATGTTCGAGGGGTATTTT
TGGGAAGTTAATAAAAAATATTTTGTAATTTTTAAGCTTAAAGGCATAGTATTACAACTTATCTT
TCAGTTGAGGGTAATATCAACAAACAACAGACATTGTAAGTGGGATAAAAATCGCGTCGAAAATG
GTTCCAAA
Found at i:10104409 original size:17 final size:17
Alignment explanation
Indices: 10104387--10104424 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
10104377 TTCATCTTTT
10104387 TCCCGTAACCAAGTTTC
1 TCCCGTAACCAAGTTTC
*
10104404 TCCCGTAACCAAGTTTT
1 TCCCGTAACCAAGTTTC
10104421 TCCC
1 TCCC
10104425 AAGCCCAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.37, G:0.11, T:0.32
Consensus pattern (17 bp):
TCCCGTAACCAAGTTTC
Found at i:10105164 original size:94 final size:94
Alignment explanation
Indices: 10104996--10105196 Score: 248
Period size: 94 Copynumber: 2.1 Consensus size: 94
10104986 GATGATGTAT
* *
10104996 TATCGATACCATAGTGAGGGTATCGATACCAGGTAACATCAAACCTAATTTTGGTATCGATACCG
1 TATCGATACCATGGTGAGGGTATCGATACCAGGTAACATCAAACCTAATTTCGGTATCGATACCG
* * *
10105061 GAGGGGGTATCGGTACCCTAGCATA-G-TAG
66 GAGGAGGTATCGATACCATAG--TAGGTTAG
* ** *
10105090 TATCGATACCATGGTGAGGGTATCGA-ACCGAGG-CACATTGAAGCTAATTTCGGTATCGATACC
1 TATCGATACCATGGTGAGGGTATCGATACC-AGGTAACATCAAACCTAATTTCGGTATCGATACC
10105153 GGTAGGAGGTATCGATACCATAGTAGGTTAG
65 GG-AGGAGGTATCGATACCATAGTAGGTTAG
*
10105184 TATCGATAACATG
1 TATCGATACCATG
10105197 TTATAGGTAT
Statistics
Matches: 93, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
92 2 0.02
93 31 0.33
94 60 0.65
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (94 bp):
TATCGATACCATGGTGAGGGTATCGATACCAGGTAACATCAAACCTAATTTCGGTATCGATACCG
GAGGAGGTATCGATACCATAGTAGGTTAG
Found at i:10105619 original size:54 final size:54
Alignment explanation
Indices: 10105536--10106035 Score: 716
Period size: 54 Copynumber: 9.3 Consensus size: 54
10105526 TTACCCAATA
* **
10105536 GGCACTAAATGTGCATTTCACAAAATTCATCCTATGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * * * *
10105590 AGCACTAAGTATGTATTTCACGAAATTCATCAC-AAGTGAATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATC-CTATGTGGATGAATAACCGTTTC
* * *
10105644 GGCACTAAGTGTGCATTTCACGGAATTCATCCTTTGTGGATGAATAATCGTTTT
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* *
10105698 GGCACTAAGTGTGCATTTCACGGAATTCATCCTAAGTGAATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * *
10105752 GGCACTAACTGTGTATTTCACGGAATTCATCCTATCTGGATGAATAACCATTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * *
10105806 GGCACTAACTGTGTATTTCACGGAATTCATCATATGTGGATGAATAACCATTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
*
10105860 AGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * *
10105914 AGCACTAAGTATGCATTTCACGGAATTTATCCTATGTGGATGAATAATCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
*
10105968 GGCACTAAGTGTGCATTTCAC-GAATTCATCCTATGTGGATGAATAACCGTTTT
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
*
10106021 GGTACTAAGTGTGCA
1 GGCACTAAGTGTGCA
10106036 AAGCACGAAA
Statistics
Matches: 401, Mismatches: 43, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
53 44 0.11
54 356 0.89
55 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (54 bp):
GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
Found at i:10120687 original size:21 final size:20
Alignment explanation
Indices: 10120662--10120700 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
10120652 CATCAAGGTC
*
10120662 TTTGTTGAAGCCATGAAATCT
1 TTTGTCGAAGCCAT-AAATCT
*
10120683 TTTGTCGAGGCCATAAAT
1 TTTGTCGAAGCCATAAAT
10120701 TCCTACAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (20 bp):
TTTGTCGAAGCCATAAATCT
Found at i:10123037 original size:20 final size:20
Alignment explanation
Indices: 10123012--10123062 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
10123002 TAGCATAGTA
10123012 GTATCGATACCATGGTGAGG
1 GTATCGATACCATGGTGAGG
10123032 GTATCGATACCATGGTGAGG
1 GTATCGATACCATGGTGAGG
*
10123052 GTATCAATACC
1 GTATCGATACC
10123063 GAGGCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (20 bp):
GTATCGATACCATGGTGAGG
Found at i:10123623 original size:54 final size:54
Alignment explanation
Indices: 10123478--10123762 Score: 396
Period size: 54 Copynumber: 5.3 Consensus size: 54
10123468 TTACACAATA
* * * *
10123478 GGCACTAAATGTGCATTTCA-TAGAATTCATCCTTTGTGGATGAATAA-TGTTTC
1 GGCACTAAGTGTGCATTTCACGA-AATTCATCCTATGTGGATGAATAACCGTTTC
**
10123531 GGCACTAAGTGTGTGCATTTCACGCTATTCAT-CTATGTGGATGAATAACCGTTTC
1 GGCACTAA--GTGTGCATTTCACGAAATTCATCCTATGTGGATGAATAACCGTTTC
*
10123586 GGCACTAAGTGTGCATTTCACGAAATTCATCCAATGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGAAATTCATCCTATGTGGATGAATAACCGTTTC
* *
10123640 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTG
1 GGCACTAAGTGTGCATTTCACGAAATTCATCCTATGTGGATGAATAACCGTTTC
* *
10123694 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCATTTC
1 GGCACTAAGTGTGCATTTCACGAAATTCATCCTATGTGGATGAATAACCGTTTC
* * *
10123748 AGAACTAAATGTGCA
1 GGCACTAAGTGTGCA
10123763 AAGCACAAAA
Statistics
Matches: 210, Mismatches: 17, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
53 28 0.13
54 152 0.72
55 30 0.14
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (54 bp):
GGCACTAAGTGTGCATTTCACGAAATTCATCCTATGTGGATGAATAACCGTTTC
Found at i:10125503 original size:17 final size:17
Alignment explanation
Indices: 10125478--10125515 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
10125468 ATATCATTTT
*
10125478 TTTAGTTTCCATTAAAA
1 TTTAATTTCCATTAAAA
*
10125495 TTTAATTTCCTTTAAAA
1 TTTAATTTCCATTAAAA
10125512 TTTA
1 TTTA
10125516 GTACCTCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.34, C:0.11, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTAATTTCCATTAAAA
Found at i:10126691 original size:20 final size:17
Alignment explanation
Indices: 10126648--10126679 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10126638 ATTTATTAAT
10126648 TAATTAT-TTTTTTTGC
1 TAATTATATTTTTTTGC
10126664 TAATTATATTTTTTTG
1 TAATTATATTTTTTTG
10126680 TCTACAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.22, C:0.03, G:0.06, T:0.69
Consensus pattern (17 bp):
TAATTATATTTTTTTGC
Found at i:10131182 original size:20 final size:21
Alignment explanation
Indices: 10131145--10131183 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
10131135 AAAACCCCTA
**
10131145 TTTTCATTTCTTTTCTCTCAT
1 TTTTCATTTCTTCACTCTCAT
10131166 TTTTC-TTTCTTCACTCTC
1 TTTTCATTTCTTCACTCTC
10131184 TCTCATTCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTTCATTTCTTCACTCTCAT
Found at i:10132257 original size:3 final size:3
Alignment explanation
Indices: 10132249--10132307 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
10132239 GGCTTGCCAC
10132249 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10132297 AAT AAT AAT AA
1 AAT AAT AAT AA
10132308 CGGTCCGGGC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:10132772 original size:134 final size:134
Alignment explanation
Indices: 10132480--10133058 Score: 534
Period size: 134 Copynumber: 4.3 Consensus size: 134
10132470 ATCTGGAAAT
* * *
10132480 GTTGATTCCA-TCCACTGTT-CTTCAGGGAAGATTGAATCGAGGCAGACTTATTCCACTGTTACT
1 GTTGATT-CATTCCACTATTACTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCAACTGTTACT
* * ** * *
10132543 CAGGGAAGATCAAATCTTGAAAGAGA--GATCTATTTAACTTTTTCTTGAGGGAAAATCAAATCT
65 CAAGGAAGATCAAATCTTGAAAGAGAGGGATCTGTTCCACTTCTTCTTAAGGGAAAATCAAATC-
10132606 AGGGAC
129 AGGGAC
* * * * *** *
10132612 GTTGATTCATTCCATTGTTAC-TCAGGGAATATTGAATCAAGTTTGATTTGTTCAACTGTTACTC
1 GTTGATTCATTCCACTATTACTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCAACTGTTACTC
* * *
10132676 AAGGAAGATAAAATCTTGAAAGAGAGGGATCTGTTCCACTTCTTCTTAAGGGAAAATCAGATCCG
66 AAGGAAGATCAAATCTTGAAAGAGAGGGATCTGTTCCACTTCTTCTTAAGGGAAAATCAAATCAG
10132741 GAGAC
131 G-GAC
* *
10132746 GTTGATTCATTCCACTATT-CTTCAGGGAAGACTGAATCGAGGCAGATTTGTTCCAA-TGTTACT
1 GTTGATTCATTCCACTATTACTTCAGGGAAGATTGAATCGAGGCAGACTTGTT-CAACTGTTACT
* * ** * * *
10132809 C-AGGAATATCAAATCTTGAAAAAGAGGGATCTGTTTTATTTCTTCCTGAGGGAAAATCATATAT
65 CAAGGAAGATCAAATCTTGAAAGAGAGGGATCTGTTCCACTTCTTCTTAAGGGAAAATCA-A-AT
*
10132873 -GGGGAC
128 CAGGGAC
* * * * *
10132879 GTTGATTCATTCTATTAATTGTTAC-TCAGGGAAGATTGAATCGAGGAAGACTTGTTCCATTGTT
1 GTTGATTCATTCCACT-A---TTACTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCAACTGTT
* * * * **
10132943 ACTTAAGGAATATCAAATATTGAAAGAGAGGGATATGTTCCGTTTCTTCTTAAGGGAAAATCATA
62 ACTCAAGGAAGATCAAATCTTGAAAGAGAGGGATCTGTTCCACTTCTTCTTAAGGGAAAATCA-A
* *
10133008 TAT-AAGGAT
126 -ATCAGGGAC
* ** *
10133017 GTTGATTTATTCCACCGTTAC-TCAGGGGTAGATTGAATCGAG
1 GTTGATTCATTCCACTATTACTTCA-GGGAAGATTGAATCGAG
10133059 TTTGATTCAC
Statistics
Matches: 370, Mismatches: 60, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
131 2 0.01
132 73 0.20
133 71 0.19
134 93 0.25
135 21 0.06
136 2 0.01
137 37 0.10
138 71 0.19
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (134 bp):
GTTGATTCATTCCACTATTACTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCAACTGTTACTC
AAGGAAGATCAAATCTTGAAAGAGAGGGATCTGTTCCACTTCTTCTTAAGGGAAAATCAAATCAG
GGAC
Found at i:10132992 original size:271 final size:266
Alignment explanation
Indices: 10132433--10133005 Score: 704
Period size: 271 Copynumber: 2.1 Consensus size: 266
10132423 GAAATCTGAT
* * * * * * * * *
10132433 GAGGGATATGCTCCACTATATT-TTCAGGGAAGATCAAATCTGGAAATGTTGATTCCATCCACTG
1 GAGGGATATGTTCCACT-TCTTCTTAAGGGAAAATCAGATCCGGAGACGTTGATTCCATCCACTA
* *
10132497 TTCTTCAGGGAAGATTGAATCGAGGCAGACTTATTCCACTGTTACTCAGGGAAGATCAAATCTTG
65 TTCTTCAGGGAAGACTGAATCGAGGCAGACTTATTCCAATGTTACTCAGGGAAGATCAAATCTTG
* * *
10132562 AAAGAGAGATCTATTTAACTTTTTCTTGAGGGAAAATCAAATCTAGGGACGTTGATTCATTCCAT
130 AAAGAGAGATCTATTTAACTTTTTCCTGAGGGAAAATCAAATATAGGGACGTTGATTCATTCAAT
* *** * *
10132627 TGTTACTCAGGGAATATTGAATCAAGTTTGATTTGTTCAACTGTTACTCAAGGAAGATAAAATCT
195 TGTTACTCAGGGAAGATTGAATCAAGGAAGACTTGTTCAACTGTTACTCAAGGAAGATAAAATAT
10132692 TGAAAGA
260 TGAAAGA
*
10132699 GAGGGATCTGTTCCACTTCTTCTTAAGGGAAAATCAGATCCGGAGACGTTGATT-CATTCCACTA
1 GAGGGATATGTTCCACTTCTTCTTAAGGGAAAATCAGATCCGGAGACGTTGATTCCA-TCCACTA
* * *
10132763 TTCTTCAGGGAAGACTGAATCGAGGCAGATTTGTTCCAATGTTACTCA-GGAATATCAAATCTTG
65 TTCTTCAGGGAAGACTGAATCGAGGCAGACTTATTCCAATGTTACTCAGGGAAGATCAAATCTTG
* * * * *
10132827 AAAAAGAGGGATCTGTTTTA-TTTCTTCCTGAGGGAAAATCATATATGGGGACGTTGATTCATTC
130 --AAAGAGAGATCTATTTAACTTT-TTCCTGAGGGAAAATCAAATATAGGGACGTTGATTCATTC
* * * * *
10132891 TATTAATTGTTACTCAGGGAAGATTGAATCGAGGAAGACTTGTTCCATTGTTACTTAAGGAATAT
192 ----AATTGTTACTCAGGGAAGATTGAATCAAGGAAGACTTGTTCAACTGTTACTCAAGGAAGAT
*
10132956 CAAATATTGAAAGA
253 AAAATATTGAAAGA
**
10132970 GAGGGATATGTTCCGTTTCTTCTTAAGGGAAAATCA
1 GAGGGATATGTTCCACTTCTTCTTAAGGGAAAATCA
10133006 TATATAAGGA
Statistics
Matches: 260, Mismatches: 38, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
265 20 0.08
266 94 0.36
267 51 0.20
271 95 0.37
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.32
Consensus pattern (266 bp):
GAGGGATATGTTCCACTTCTTCTTAAGGGAAAATCAGATCCGGAGACGTTGATTCCATCCACTAT
TCTTCAGGGAAGACTGAATCGAGGCAGACTTATTCCAATGTTACTCAGGGAAGATCAAATCTTGA
AAGAGAGATCTATTTAACTTTTTCCTGAGGGAAAATCAAATATAGGGACGTTGATTCATTCAATT
GTTACTCAGGGAAGATTGAATCAAGGAAGACTTGTTCAACTGTTACTCAAGGAAGATAAAATATT
GAAAGA
Found at i:10133130 original size:40 final size:40
Alignment explanation
Indices: 10133075--10133155 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
10133065 TCACTTTTCT
10133075 TGTCTTCAAGAATATCAAATATGAAAATTAAACATTAACG
1 TGTCTTCAAGAATATCAAATATGAAAATTAAACATTAACG
* *
10133115 TGTCTTTAAGAATATCAAATCTGAAAATTAAACATTAACG
1 TGTCTTCAAGAATATCAAATATGAAAATTAAACATTAACG
10133155 T
1 T
10133156 TGTTAGTATG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.32
Consensus pattern (40 bp):
TGTCTTCAAGAATATCAAATATGAAAATTAAACATTAACG
Found at i:10133391 original size:22 final size:22
Alignment explanation
Indices: 10133366--10133420 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
10133356 AAAATTTCAA
10133366 TTTTCTGATTTAAATGAGAAAC
1 TTTTCTGATTTAAATGAGAAAC
10133388 TTTTCTGATTTAAATGAGAAAC
1 TTTTCTGATTTAAATGAGAAAC
*
10133410 TTTTCTAATTT
1 TTTTCTGATTT
10133421 TTTTGAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (22 bp):
TTTTCTGATTTAAATGAGAAAC
Found at i:10133555 original size:42 final size:42
Alignment explanation
Indices: 10133455--10133564 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 42
10133445 CTACCCGAAG
* * *
10133455 GTCTTATGGATGGCCCGAAGGACTTA-TCATCTTGCTCGAAA
1 GTCTTATAGATGGCCCGAAGGACTTACTCATCATGCTCAAAA
* * * *
10133496 GGCTTATAGATGACCCGAAGGATTTACTCATCATGTTCAAAA
1 GTCTTATAGATGGCCCGAAGGACTTACTCATCATGCTCAAAA
*
10133538 GTCTTACT-GATGGCCCGAAGGAGTTAC
1 GTCTTA-TAGATGGCCCGAAGGACTTAC
10133565 CAATTTTAGA
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
41 22 0.39
42 34 0.60
43 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (42 bp):
GTCTTATAGATGGCCCGAAGGACTTACTCATCATGCTCAAAA
Found at i:10134098 original size:194 final size:193
Alignment explanation
Indices: 10133494--10134138 Score: 872
Period size: 192 Copynumber: 3.4 Consensus size: 193
10133484 TCTTGCTCGA
* * ** * * *
10133494 AAGG-CTTATAGATGACCCGAAGGATTTACTCATCATGTTCAAAAGTCTTACTGATGGCCCGAAG
1 AAGGTCTTATGGATGCCCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
* * * *
10133558 GAGTTACC-AATTTTAGAAATAGTTTACTAGGTAAGAAACTTTTCTTAC-TTTACAAAAATTTCA
66 GACTTACCAAATTTT-GGAATAGTTTACTAGGTAAGAAAGTTTTCTTACTTTTACAAAAAATTC-
* * * *
10133621 AATTTCT-GATTTAAATGAGAAACTTTTTCTCATTTTTCAAAAATCATGTGAAAACATCCT-CCT
129 AATTTTTAGATTTAAATGAGAAAC-TTTTCTCATTTTTCGAAAAGCATGTGAAAACATCCTGCCC
10133684 G
193 G
* * * *
10133685 AAGGTTTTATGGGTGGCCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCTGAAG
1 AAGGTCTTATGGATGCCCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
*
10133750 GACTTACCAAA-TTTGGTAATAGTTTACTAAGTAAGAAAGTTTTCTTACTTTT-CAAAAAATTCA
66 GACTTACCAAATTTTGG-AATAGTTTACTAGGTAAGAAAGTTTTCTTACTTTTACAAAAAATTCA
* * * * *
10133813 ATTTTCATATTTAAATGAGAAACTTTTCCCATTTTTCGAAAAGCTTGTGAAAACATCCTGCTCG
130 ATTTTTAGATTTAAATGAGAAACTTTTCTCATTTTTCGAAAAGCATGTGAAAACATCCTGCCCG
* * *
10133877 AAGGTCTTATGGATGCCCCGAAGGATTTAAGCATCATGCTTGAATGACTTACTGATGACCCGAAG
1 AAGGTCTTATGGATGCCCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
* *
10133942 GACTTACCAAATTTTGGAATAGTTTACTAGGTAAGAAAGTTTTTTTACTTTTTAAAAAAAATTCA
66 GACTTACCAAATTTTGGAATAGTTTACTAGGTAAGAAAGTTTTCTTAC-TTTTACAAAAAATTCA
* * *
10134007 ATTTTTAGATCTAAATGAGAAACTTTTCTCATTTTTCGAAAAGCAAGTGAAAACATCATGCCCG
130 ATTTTTAGATTTAAATGAGAAACTTTTCTCATTTTTCGAAAAGCATGTGAAAACATCCTGCCCG
* * *
10134071 AAGGTCTTATGAATGCCCCGAAGGATTTAAGTATCATGCTCGAAAGACTTACTGATGGCCCAAAG
1 AAGGTCTTATGGATGCCCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
10134136 GAC
66 GAC
10134139 ATACTAGTTT
Statistics
Matches: 397, Mismatches: 48, Indels: 15
0.86 0.10 0.03
Matches are distributed among these distances:
191 42 0.11
192 213 0.54
193 14 0.04
194 128 0.32
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Consensus pattern (193 bp):
AAGGTCTTATGGATGCCCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
GACTTACCAAATTTTGGAATAGTTTACTAGGTAAGAAAGTTTTCTTACTTTTACAAAAAATTCAA
TTTTTAGATTTAAATGAGAAACTTTTCTCATTTTTCGAAAAGCATGTGAAAACATCCTGCCCG
Found at i:10137265 original size:77 final size:79
Alignment explanation
Indices: 10137153--10137301 Score: 180
Period size: 77 Copynumber: 1.9 Consensus size: 79
10137143 TTAATAAATT
* **
10137153 TCTTATTTAATTAATTCAAATTAAATATACCTT-AAAGACTTATAATCTGAATTACAATC-TATA
1 TCTTATTTAATTAATTCAAATTAAATATACATTAAAAGACTTATAATCAAAATTACAATCTTATA
10137216 ATGTTTATTTAAAA
66 ATGTTTATTTAAAA
* * * * *
10137230 TCTTATTTAATT-ATTCTGAATTAAATAT-CAATTAAAAGAGTTGTAATCAAAATTACATTCTTT
1 TCTTATTTAATTAATTC-AAATTAAATATAC-ATTAAAAGACTTATAATCAAAATTACAATCTTA
10137293 TAATGTTTA
64 TAATGTTTA
10137302 CTTACTATAT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
76 5 0.08
77 24 0.40
78 21 0.35
79 10 0.17
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.44
Consensus pattern (79 bp):
TCTTATTTAATTAATTCAAATTAAATATACATTAAAAGACTTATAATCAAAATTACAATCTTATA
ATGTTTATTTAAAA
Found at i:10142850 original size:20 final size:21
Alignment explanation
Indices: 10142789--10142851 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 21
10142779 ATACAACACT
* *
10142789 GATATTATTCTTTATCGGTATC
1 GATATTATTCATTAT-AGTATC
* * *
10142811 GATATTGTTCATCA-AATATC
1 GATATTATTCATTATAGTATC
10142831 GATATTATTC-TTATAGTATC
1 GATATTATTCATTATAGTATC
10142851 G
1 G
10142852 TTAGGAGTAT
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
19 2 0.06
20 19 0.59
22 11 0.34
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.46
Consensus pattern (21 bp):
GATATTATTCATTATAGTATC
Found at i:10143411 original size:24 final size:23
Alignment explanation
Indices: 10143384--10143441 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 23
10143374 CTACATATAC
10143384 ATATTTATATAGATAGTATACTTT
1 ATATTTATATAGATAGT-TACTTT
*
10143408 ATATATTATA-AGATAGTTTCTTT
1 ATAT-TTATATAGATAGTTACTTT
*
10143431 AGTATATATAT
1 A-TATTTATAT
10143442 TCATATATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
23 10 0.34
24 14 0.48
25 5 0.17
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.50
Consensus pattern (23 bp):
ATATTTATATAGATAGTTACTTT
Found at i:10143440 original size:23 final size:23
Alignment explanation
Indices: 10143389--10143440 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
10143379 TATACATATT
10143389 TATAT-AGATAGTATACTTTATA
1 TATATAAGATAGTATACTTTATA
*
10143411 TATTATAAGATAGT-TTCTTTAGTA
1 TA-TATAAGATAGTATACTTTA-TA
10143435 TATATA
1 TATATA
10143441 TTCATATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 2 0.08
23 13 0.50
24 11 0.42
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.48
Consensus pattern (23 bp):
TATATAAGATAGTATACTTTATA
Found at i:10143552 original size:18 final size:18
Alignment explanation
Indices: 10143500--10143552 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
10143490 TATTGCATAC
* *
10143500 TTATATATATATATATAT
1 TTATATATATATATTTAG
* *
10143518 TTATATATATTTGTTTAG
1 TTATATATATATATTTAG
*
10143536 TTATATATATACATTTA
1 TTATATATATATATTTA
10143553 TATTTACACT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.57
Consensus pattern (18 bp):
TTATATATATATATTTAG
Found at i:10154415 original size:12 final size:12
Alignment explanation
Indices: 10154400--10154442 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
10154390 TACTTATATA
10154400 AATAATAAAAAT
1 AATAATAAAAAT
*
10154412 AATAATTAAAGA-
1 AATAA-TAAAAAT
10154424 AATAATAAAAAT
1 AATAATAAAAAT
10154436 AA-AATAA
1 AATAATAA
10154443 TGATTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 10 0.37
12 12 0.44
13 5 0.19
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (12 bp):
AATAATAAAAAT
Found at i:10154464 original size:30 final size:31
Alignment explanation
Indices: 10154430--10154516 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 31
10154420 AAGAAATAAT
10154430 AAAAATAAAATAATGATTAAAATAAA-AGGA
1 AAAAATAAAATAATGATTAAAATAAATAGGA
* **
10154460 AAAAA-AGAAATAGT-ATTAAAAATAAATAGTC
1 AAAAATA-AAATAATGATT-AAAATAAATAGGA
10154491 AAAAATGAAAATTTAATGATTAAAAT
1 AAAAAT-AAAA--TAATGATTAAAAT
10154517 GTAAAATTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
29 4 0.09
30 19 0.42
31 7 0.16
32 3 0.07
33 1 0.02
34 8 0.18
35 3 0.07
ACGTcount: A:0.66, C:0.01, G:0.09, T:0.24
Consensus pattern (31 bp):
AAAAATAAAATAATGATTAAAATAAATAGGA
Found at i:10155797 original size:3 final size:3
Alignment explanation
Indices: 10155789--10155844 Score: 66
Period size: 3 Copynumber: 20.0 Consensus size: 3
10155779 ATTATTTATT
* *
10155789 TAA TAA TAA TAA T-A TAA T-A TAA TAA TAA TAA TAT TAA -AA CAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10155833 TAA TAA TAA TAA
1 TAA TAA TAA TAA
10155845 ATAAAAGAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
2 8 0.17
3 39 0.83
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:10155813 original size:19 final size:20
Alignment explanation
Indices: 10155789--10155845 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 20
10155779 ATTATTTATT
*
10155789 TAATAATAATAATA-TAATA
1 TAATAATAATAATATTAAAA
10155808 TAATAATAATAATATTAAAA
1 TAATAATAATAATATTAAAA
* *
10155828 CAA-AATAATAATAATAAA
1 TAATAATAATAATATTAAA
10155846 TAAAAGAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 28 0.82
20 6 0.18
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (20 bp):
TAATAATAATAATATTAAAA
Found at i:10155817 original size:22 final size:22
Alignment explanation
Indices: 10155789--10155848 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 22
10155779 ATTATTTATT
* *
10155789 TAATAATAATAATATAATATAA
1 TAATAATAATAATATAACAAAA
* *
10155811 TAATAATAATATTAAAACAAAA
1 TAATAATAATAATATAACAAAA
10155833 TAATAATAATAA-ATAA
1 TAATAATAATAATATAA
10155849 AAGAAATGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 3 0.09
22 29 0.91
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (22 bp):
TAATAATAATAATATAACAAAA
Found at i:10155855 original size:22 final size:21
Alignment explanation
Indices: 10155790--10155855 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 21
10155780 TTATTTATTT
* *
10155790 AATAATAATAATATAATATAAT
1 AATAATAATAATA-AATAAAAA
* *
10155812 AATAATAAT-ATTAA-AACAA
1 AATAATAATAATAAATAAAAA
10155831 AATAATAATAATAAATAAAAGA
1 AATAATAATAATAAATAAAA-A
10155853 AAT
1 AAT
10155856 GAAATAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
19 11 0.31
20 6 0.17
21 5 0.14
22 13 0.37
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (21 bp):
AATAATAATAATAAATAAAAA
Found at i:10156274 original size:124 final size:123
Alignment explanation
Indices: 10156105--10156405 Score: 360
Period size: 124 Copynumber: 2.5 Consensus size: 123
10156095 TCATTGTGAA
* * *
10156105 CTTCTTCTTCTTCAGATGAGTTCTTCTCATTGTGAAC-TCCTTCTGGAAATGCTGATGA-TGATA
1 CTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTC-TCTGGAAAAGCTGAT-ACTGATA
* ** **
10156168 TATCTCCTTCTGTGATAGAGTCATGCCAAAGGTCAAACAAGCTCTT-CTCATTATGAACAT
64 TATCTCCTTCTATGATAGAGTCATGAAAAAGGTCAAACAAAAT-TTCCTCATTATGAACAT
* * * * *
10156228 CTTCTTCTTTCTTGAGATGAGTTCTTCTTATTATGAACTTTCTCTGGAAAAGTTGATACTGGTCT
1 CTTCTTC-TTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATACTGATAT
** *
10156293 ATCTCCTTCTATGATAGAGTCATGAAAAAGGTTGAACAAAATTTCCTCATTATGAACTT
65 ATCTCCTTCTATGATAGAGTCATGAAAAAGGTCAAACAAAATTTCCTCATTATGAACAT
* * *
10156352 CTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAAC-TT-TCTGGAAAAGTTGAT
1 CTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGAT
10156406 CCATCGAATG
Statistics
Matches: 154, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
121 15 0.10
122 2 0.01
123 36 0.23
124 99 0.64
125 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (123 bp):
CTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATACTGATATA
TCTCCTTCTATGATAGAGTCATGAAAAAGGTCAAACAAAATTTCCTCATTATGAACAT
Found at i:10156668 original size:113 final size:110
Alignment explanation
Indices: 10156318--10157622 Score: 1419
Period size: 113 Copynumber: 11.7 Consensus size: 110
10156308 AGAGTCATGA
* *
10156318 AAAAGGTTGAACAAAATT-TCCTCATTATGAACTTCTTCTTCCTCTTCAGATA-AGTTCTTCTCA
1 AAAAGGTTGAAC-AAATTCTTCTCATTATGAAC-T-TTCTTCTTCTTCAGATAGAGTTCTTCTCA
* * *
10156381 TTATGAACTT-TCTGGAAAAGTTGATCCATCGAATGATGAATTCAAAC
63 TTATGAACTTACCTGGAAAAGTTGATCCATCAAATGATGAATTCATAC
* *
10156428 AAAA-GTTGAACAAATTCTTTTCATTATGAATTCCTTCTTCCTTCTTCAGATA-AGTTCTTCTCA
1 AAAAGGTTGAACAAATTCTTCTCATTATGAA--CTTTCTT-CTTCTTCAGATAGAGTTCTTCTCA
* * *
10156491 TTATGAACTT-TCTGGAAAAGTTGATCCATCGAATGATGGATT--TGAGC
63 TTATGAACTTACCTGGAAAAGTTGATCCATCAAATGATGAATTCAT-A-C
*
10156538 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGATGACGAGTTCTTATCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGAT-A-GAGTTCTTCTCAT
10156603 TATGAACTCTACCT-GACAATA-TTGATCCATCAAATGATGAATTCATAC
64 TATGAACT-TACCTGGA-AA-AGTTGATCCATCAAATGATGAATTCATAC
* *
10156651 AAAAGATCGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT-GAGTTCTTCTCA
1 AAAAGGTTGAACAAATTCTTCTCATTATGAAC-T-TTCTT-CTTCTTCAGATAGAGTTCTTCTCA
* * * * * *
10156715 TTATGAACTTTCTCTAGAAAAGCTGATCCATCAAGTGATGGATT--TGAGT
63 TTATGAACTTAC-CTGGAAAAGTTGATCCATCAAATGATGAATTCAT-A-C
10156764 AAAAGGTTGAACAAATTCTTCTCATTATGAA-TTTCTTCTTCTTCAGATGACGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGAT-A-GAGTTCTTCTCAT
* * *
10156828 TATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
64 TATGAACT-TACCTGGAAAAGTTGATCCATCAAATGATGAATTCATAC
** *
10156876 AAAAGGTCAAACAAATTCTTCTCATTATGAACTTCTTATTCCTTCTTCAGAT-GAGTTCTTCTCA
1 AAAAGGTTGAACAAATTCTTCTCATTATGAAC-T-TTCTT-CTTCTTCAGATAGAGTTCTTCTCA
* * * * *
10156940 TTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATT--TGAGT
63 TTATGAACTTAC-CTGGAAAAGTTGATCCATCAAATGATGAATTCAT-A-C
10156989 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGATGACGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGAT-A-GAGTTCTTCTCAT
* * *
10157054 TATGAACTCTACCT-GATAATA-TTGATTCATTAAATGATGAATTCAAAC
64 TATGAACT-TACCTGGA-AA-AGTTGATCCATCAAATGATGAATTCATAC
* *
10157102 AAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAAT-GAGTTCTTCTCA
1 AAAAGGTTGAACAAATTCTTCTCATTATGAAC-T-TTCTT-CTTCTTCAGATAGAGTTCTTCTCA
* * * * *
10157166 TTATGATA-TTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATT--TGAGT
63 TTATGA-ACTTAC-CTGGAAAAGTTGATCCATCAAATGATGAATTCAT-A-C
10157215 AAAAGGTTGAACAAATTCTTCTCATTATGAA-TTTCTTCTTCTTCAGATGACGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGAT-A-GAGTTCTTCTCAT
* * *
10157279 TATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
64 TATGAACT-TACCTGGAAAAGTTGATCCATCAAATGATGAATTCATAC
*
10157327 AAAAGGTCGAACAAATTCTTCTCATTATGAAC-TTCTTCCTTCTTCAGAT-GAGTTCTTCTCATT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTT-CTTCTTCAGATAGAGTTCTTCTCATT
* * * * *
10157390 ATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATT--TGAGT
65 ATGAACTTAC-CTGGAAAAGTTGATCCATCAAATGATGAATTCAT-A-C
10157437 AAAAGGTTGAACAAATTCTTCTCATTATGAA-TTTCTTCTTCTTCAGATAACGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGAT-A-GAGTTCTTCTCAT
* * *
10157501 TATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
64 TATGAACT-TACCTGGAAAAGTTGATCCATCAAATGATGAATTCATAC
* *
10157549 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTATTCAGAT-GAGTTCTTCTCA
1 AAAAGGTTGAACAAATTCTTCTCATTATGAAC-T-TTCTT-CTTCTTCAGATAGAGTTCTTCTCA
* *
10157613 TAAAGAACTT
63 TTATGAACTT
10157623 CTACTGGTAC
Statistics
Matches: 1023, Mismatches: 95, Indels: 152
0.81 0.07 0.12
Matches are distributed among these distances:
108 16 0.02
109 66 0.06
110 175 0.17
111 53 0.05
112 250 0.24
113 386 0.38
114 15 0.01
115 20 0.02
116 42 0.04
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (110 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGATAGAGTTCTTCTCATTA
TGAACTTACCTGGAAAAGTTGATCCATCAAATGATGAATTCATAC
Found at i:10156865 original size:225 final size:226
Alignment explanation
Indices: 10156318--10157622 Score: 2151
Period size: 225 Copynumber: 5.8 Consensus size: 226
10156308 AGAGTCATGA
* *
10156318 AAAAGGTTGAACAAAATT-TCCTCATTATGAACTTCTTCTTCCTCTTCAGAT-A--AGTTCTTCT
1 AAAAGGTTGAAC-AAATTCTTCTCATTATGAAC-T-TTCTTCTTCTTCAGATGACGAGTTCTTCT
* * * * *
10156379 CATTATGAACT-T-TCTGGAAAAGTTGATCCATCGAATGATGAATTCAAACAAAA-GTTGAACAA
63 CATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCGAACAA
* *
10156441 ATTCTTTTCATTATGAA-TTCCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAAC-TT-TC
128 ATTCTTCTCATTATGAACTT-CTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
* *
10156503 TGGAAAAGTTGATCCATCGAA-TGATGGATTTGAGC
192 TGGAAAAGCTGATCCATC-AAGTGATGGATTTGAGT
*
10156538 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGATGACGAGTTCTTATCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGATGACGAGTTCTTCTCAT
* * * *
10156603 TATGAACTCTACCTGACAATATTGATCCATCAAATGATGAATTCATACAAAAGATCGAACAAATT
66 TATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCGAACAAATT
*
10156668 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTAGA
131 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGA
10156733 AAAGCTGATCCATCAAGTGATGGATTTGAGT
196 AAAGCTGATCCATCAAGTGATGGATTTGAGT
10156764 AAAAGGTTGAACAAATTCTTCTCATTATGAA-TTTCTTCTTCTTCAGATGACGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGATGACGAGTTCTTCTCAT
*
10156828 TATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCAAACAAATT
66 TATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCGAACAAATT
*
10156893 CTTCTCATTATGAACTTCTTATTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGA
131 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGA
10156958 AAAGCTGATCCATCAAGTGATGGATTTGAGT
196 AAAGCTGATCCATCAAGTGATGGATTTGAGT
10156989 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGATGACGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGATGACGAGTTCTTCTCAT
** * * *
10157054 TATGAACTCTACCTGATAATATTGATTCATTAAATGATGAATTCAAACAAAAGGTCGAACAAATT
66 TATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCGAACAAATT
*
10157119 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGAGTTCTTCTCATTATGATA-TTTCTCTGG
131 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA-ACTTTCTCTGG
10157183 AAAAGCTGATCCATCAAGTGATGGATTTGAGT
195 AAAAGCTGATCCATCAAGTGATGGATTTGAGT
10157215 AAAAGGTTGAACAAATTCTTCTCATTATGAA-TTTCTTCTTCTTCAGATGACGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGATGACGAGTTCTTCTCAT
10157279 TATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCGAACAAATT
66 TATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCGAACAAATT
10157344 CTTCTCATTATGAA---CTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGA
131 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGA
10157406 AAAGCTGATCCATCAAGTGATGGATTTGAGT
196 AAAGCTGATCCATCAAGTGATGGATTTGAGT
*
10157437 AAAAGGTTGAACAAATTCTTCTCATTATGAA-TTTCTTCTTCTTCAGATAACGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGATGACGAGTTCTTCTCAT
* *
10157501 TATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAGTT
66 TATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCGAACAAATT
* * *
10157566 CTTCTCATTATGAACTTCTTCTTCCTTATTCAGATGAGTTCTTCTCATAAAGAACTT
131 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTT
10157623 CTACTGGTAC
Statistics
Matches: 1023, Mismatches: 45, Indels: 29
0.93 0.04 0.03
Matches are distributed among these distances:
218 15 0.01
219 7 0.01
220 25 0.02
221 20 0.02
222 217 0.21
223 34 0.03
224 60 0.06
225 367 0.36
226 277 0.27
227 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (226 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTTCTTCTTCTTCAGATGACGAGTTCTTCTCAT
TATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCGAACAAATT
CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGA
AAAGCTGATCCATCAAGTGATGGATTTGAGT
Found at i:10157058 original size:451 final size:450
Alignment explanation
Indices: 10156318--10157622 Score: 2172
Period size: 451 Copynumber: 2.9 Consensus size: 450
10156308 AGAGTCATGA
* *
10156318 AAAAGGTTGAACAAAATT-TCCTCATTATGAACTTCTTCTTCCTCTTCAGAT-A--AGTTCTTCT
1 AAAAGGTTGAAC-AAATTCTTCTCATTATGAA--T-TTCTTCTTCTTCAGATGACGAGTTCTTCT
* * * * *
10156379 CATTATGAACT-T-TCTGGAAAAGTTGATCCATCGAATGATGAATTCAAACAAAA-GTTGAACAA
62 CATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCGAACAA
* *
10156441 ATTCTTTTCATTATGAA-TTCCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAAC-TT-TC
127 ATTCTTCTCATTATGAACTT-CTT-TTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
* *
10156503 TGGAAAAGTTGATCCATCGAA-TGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATG
190 TGGAAAAGCTGATCCATC-AAGTGATGGATTTGAGTAAAAGGTTGAACAAATTCTTCTCATTATG
*
10156567 AACTTTCTTCTTCTTCAGATGACGAGTTCTTATCATTATGAACTCTACCTGACAATATTGATCCA
254 AACTTTCTTCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGACAATATTGATCCA
* *
10156632 TCAAATGATGAATTCATACAAAAGATCGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCT
319 TCAAATGATGAATTCAAACAAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCT
10156697 TCAGATGAGTTCTTCTCATTATGAACTTTCTCTAGAAAAGCTGATCCATCAAGTGATGGATTTGA
384 TCAGATGAGTTCTTCTCATTATGAACTTTCTCTAGAAAAGCTGATCCATCAAGTGATGGATTTGA
10156762 GT
449 GT
10156764 AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGATGACGAGTTCTTCTCATT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGATGACGAGTTCTTCTCATT
*
10156829 ATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCAAACAAATTC
66 ATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCGAACAAATTC
10156894 TTCTCATTATGAACTTCTTATTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAA
131 TTCTCATTATGAACTTCTT-TTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAA
10156959 AAGCTGATCCATCAAGTGATGGATTTGAGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTT
195 AAGCTGATCCATCAAGTGATGGATTTGAGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTT
* * *
10157024 CTTCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGATAATATTGATTCATTAAAT
260 CTTCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGACAATATTGATCCATCAAAT
*
10157089 GATGAATTCAAACAAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAAT
325 GATGAATTCAAACAAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
*
10157154 GAGTTCTTCTCATTATGATA-TTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGT
390 GAGTTCTTCTCATTATGA-ACTTTCTCTAGAAAAGCTGATCCATCAAGTGATGGATTTGAGT
10157215 AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGATGACGAGTTCTTCTCATT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGATGACGAGTTCTTCTCATT
10157280 ATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCGAACAAATTC
66 ATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCGAACAAATTC
10157345 TTCTCATTATGAACTTC--TTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
131 TTCTCATTATGAACTTCTTTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
10157408 AGCTGATCCATCAAGTGATGGATTTGAGTAAAAGGTTGAACAAATTCTTCTCATTATGAA-TTTC
196 AGCTGATCCATCAAGTGATGGATTTGAGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTTC
* * *
10157472 TTCTTCTTCAGATAACGAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATG
261 TTCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGACAATATTGATCCATCAAATG
* * *
10157537 ATGAATTCAAACAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTATTCAGATG
326 ATGAATTCAAACAAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
* *
10157602 AGTTCTTCTCATAAAGAACTT
391 AGTTCTTCTCATTATGAACTT
10157623 CTACTGGTAC
Statistics
Matches: 812, Mismatches: 34, Indels: 25
0.93 0.04 0.03
Matches are distributed among these distances:
443 15 0.02
444 2 0.00
445 5 0.01
446 45 0.06
447 142 0.17
448 143 0.18
449 59 0.07
450 6 0.01
451 394 0.49
452 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (450 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGATGACGAGTTCTTCTCATT
ATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTCGAACAAATTC
TTCTCATTATGAACTTCTTTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
AGCTGATCCATCAAGTGATGGATTTGAGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTTC
TTCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGACAATATTGATCCATCAAATG
ATGAATTCAAACAAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
AGTTCTTCTCATTATGAACTTTCTCTAGAAAAGCTGATCCATCAAGTGATGGATTTGAGT
Found at i:10158080 original size:22 final size:22
Alignment explanation
Indices: 10158055--10158107 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
10158045 TAAAGCTTTT
*
10158055 ATCTTTGAAAAGAAAATCTGTC
1 ATCTTTGAAAAGAAAATCTATC
* **
10158077 ATCTTTAAAAAGGGAATCTATC
1 ATCTTTGAAAAGAAAATCTATC
10158099 ATCTTTGAA
1 ATCTTTGAA
10158108 GAGTGTAGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCTTTGAAAAGAAAATCTATC
Found at i:10163037 original size:7 final size:7
Alignment explanation
Indices: 10163013--10163073 Score: 86
Period size: 7 Copynumber: 8.7 Consensus size: 7
10163003 CCTGATTCAA
*
10163013 TTTTTCT
1 TTTTTCC
**
10163020 TTTTTAT
1 TTTTTCC
10163027 TTTTTCC
1 TTTTTCC
10163034 TTTTTCC
1 TTTTTCC
10163041 TTTTTCC
1 TTTTTCC
10163048 TTTTTCC
1 TTTTTCC
*
10163055 TTTTTCT
1 TTTTTCC
10163062 TTTTTCC
1 TTTTTCC
10163069 TTTTT
1 TTTTT
10163074 TTATGAGTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 49 1.00
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTCC
Found at i:10166401 original size:26 final size:28
Alignment explanation
Indices: 10166352--10166432 Score: 85
Period size: 26 Copynumber: 2.9 Consensus size: 28
10166342 ATAAAAATAC
* * *
10166352 AAATGCAAAGATGCCAAATGCAAATGTAA
1 AAATGTAAA-ATGCAAAATACAAATGTAA
* *
10166381 AAATGT-AAATG-TAAATACAAACGTAA
1 AAATGTAAAATGCAAAATACAAATGTAA
10166407 AAATGTACAAATGCAAAATACAAATG
1 AAATGTA-AAATGCAAAATACAAATG
10166433 CATGTATGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 18 0.42
27 3 0.07
28 7 0.16
29 15 0.35
ACGTcount: A:0.56, C:0.11, G:0.14, T:0.20
Consensus pattern (28 bp):
AAATGTAAAATGCAAAATACAAATGTAA
Found at i:10167994 original size:20 final size:21
Alignment explanation
Indices: 10167955--10167995 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
10167945 AAGTAATAAA
10167955 AAAAATTGAAAGAAAAGAATT
1 AAAAATTGAAAGAAAAGAATT
* *
10167976 AAAAATT-AAATAAATGAATT
1 AAAAATTGAAAGAAAAGAATT
10167996 TTTAATTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.66, C:0.00, G:0.10, T:0.24
Consensus pattern (21 bp):
AAAAATTGAAAGAAAAGAATT
Found at i:10168796 original size:11 final size:10
Alignment explanation
Indices: 10168769--10168820 Score: 54
Period size: 9 Copynumber: 5.1 Consensus size: 10
10168759 ATTTACTTAT
10168769 ATAAATAATA
1 ATAAATAATA
10168779 A-AAATAATA
1 ATAAATAATA
10168788 ATGAAATAATA
1 AT-AAATAATA
*
10168799 ATTAAAGCAATA
1 A-TAAA-TAATA
10168811 AT-AATAATA
1 ATAAATAATA
10168820 A
1 A
10168821 AATAATATTG
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
9 14 0.39
10 3 0.08
11 13 0.36
12 6 0.17
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (10 bp):
ATAAATAATA
Found at i:10170189 original size:3 final size:3
Alignment explanation
Indices: 10170181--10170236 Score: 66
Period size: 3 Copynumber: 20.0 Consensus size: 3
10170171 ATTATTTATT
* *
10170181 TAA TAA TAA TAA T-A TAA T-A TAA TAA TAA TAA TAT TAA -AA CAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10170225 TAA TAA TAA TAA
1 TAA TAA TAA TAA
10170237 ATAAAACAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
2 8 0.17
3 39 0.83
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:10170205 original size:19 final size:20
Alignment explanation
Indices: 10170181--10170237 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 20
10170171 ATTATTTATT
*
10170181 TAATAATAATAATA-TAATA
1 TAATAATAATAATATTAAAA
10170200 TAATAATAATAATATTAAAA
1 TAATAATAATAATATTAAAA
* *
10170220 CAA-AATAATAATAATAAA
1 TAATAATAATAATATTAAA
10170238 TAAAACAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 28 0.82
20 6 0.18
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (20 bp):
TAATAATAATAATATTAAAA
Found at i:10170209 original size:22 final size:22
Alignment explanation
Indices: 10170181--10170246 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
10170171 ATTATTTATT
* *
10170181 TAATAATAATAATATAATATAA
1 TAATAATAATAATATAACAAAA
* *
10170203 TAATAATAATATTAAAACAAAA
1 TAATAATAATAATATAACAAAA
*
10170225 TAATAATAATAAATAAAACAAA
1 TAATAATAAT-AATATAACAAA
10170247 TGAAATAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
22 28 0.74
23 10 0.26
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (22 bp):
TAATAATAATAATATAACAAAA
Found at i:10176105 original size:78 final size:80
Alignment explanation
Indices: 10175976--10176145 Score: 254
Period size: 78 Copynumber: 2.1 Consensus size: 80
10175966 TGTTAAGCAT
10175976 TTAATCTTTTACTCAAAGGCATTTAGACTTTCATCTAACTGACATTATTGACAC-CT-TTCCAAA
1 TTAATCTTTTACTCAAAGGCATTTAGACTTTCATCTAACTGACATTATTGACACGCTCTTCCAAA
* **
10176039 TGCACAGCTAGGTAA
66 TGCACAACTAGACAA
* * *
10176054 TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTGGCATTATTGACACGTTTCTTCCAA
1 TTAATCTTTTACTCAAAGGCATTTAGACTTTCATCTAACTGACATTATTGACACG-CTCTTCCAA
*
10176119 ATGCACAACTAGACAT
65 ATGCACAACTAGACAA
10176135 TTAATCTTTTA
1 TTAATCTTTTA
10176146 TTTTAAAATA
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
78 52 0.63
80 1 0.01
81 29 0.35
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.37
Consensus pattern (80 bp):
TTAATCTTTTACTCAAAGGCATTTAGACTTTCATCTAACTGACATTATTGACACGCTCTTCCAAA
TGCACAACTAGACAA
Found at i:10176730 original size:95 final size:95
Alignment explanation
Indices: 10176551--10176748 Score: 242
Period size: 95 Copynumber: 2.1 Consensus size: 95
10176541 ACCATTGTAT
* *
10176551 CGATACTTCTATACTATGGTACCGATACTCCCCTTTCAGTATCGATACCGTTTCGGTATTTTGAA
1 CGATACTTCTATACTATGGTACCGATACTCCCCTTTCAGTATCGATACCATTTC-GTATTTAGAA
* *
10176616 ATCCCTGGTATCGATACCTTTCTACTAGTTC
65 ATCCATGGTATCGATACCTTTCTACTAGTAC
* *
10176647 CGATACTTCTATACTATGGTATCGATACT-CCCTTTCAGTATTGATACCATTT-GTACATTCTAG
1 CGATACTTCTATACTATGGTACCGATACTCCCCTTTCAGTATCGATACCATTTCGT--ATT-TAG
* * *
10176710 -ATTCCAAT-GTATCGATACCTTTCTCCTAGTAG
63 AAATCC-ATGGTATCGATACCTTTCTACTAGTAC
10176742 CGATACT
1 CGATACT
10176749 CACATCAGTA
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
93 2 0.02
95 56 0.63
96 31 0.35
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.38
Consensus pattern (95 bp):
CGATACTTCTATACTATGGTACCGATACTCCCCTTTCAGTATCGATACCATTTCGTATTTAGAAA
TCCATGGTATCGATACCTTTCTACTAGTAC
Found at i:10182896 original size:81 final size:81
Alignment explanation
Indices: 10182761--10183114 Score: 521
Period size: 81 Copynumber: 4.4 Consensus size: 81
10182751 TGTTAAACAT
* ** * *
10182761 TTAATCTTTTACTCAAAGGAATTTAGTTTTTCATCTAACTGACATTATTGACACCTTTCTGCCAA
1 TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTGGCATTATTGACACCTTTATGCCAA
*
10182826 ATGCACAGTTAGGCAA
66 ATGCACAGCTAGGCAA
*
10182842 TTAATCTTTTACTCAAAGGTATTTAGCCTTTCATCTAACTGGCATTATTGACACCTTTATGCCAA
1 TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTGGCATTATTGACACCTTTATGCCAA
* *
10182907 ATGCACAGCTAAGCAT
66 ATGCACAGCTAGGCAA
* * *
10182923 TTAATCTTTTACTCAAAGGCATTTAACCTTTCATCTAACTGGCATTATTGACACATTTCTGCCAA
1 TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTGGCATTATTGACACCTTTATGCCAA
*
10182988 ATGCATAGCTAGGCAA
66 ATGCACAGCTAGGCAA
* * * *
10183004 TTAATATTTTATTCAAAGGCATTTAGCCTTTTATCTAACTGGCATTATTGACACCTTTAAGCCAA
1 TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTGGCATTATTGACACCTTTATGCCAA
* *
10183069 ATGCACAAG-TATGCAT
66 ATGCAC-AGCTAGGCAA
10183085 TTAATCTTTTACTCAAAGGCATTTAGCCTT
1 TTAATCTTTTACTCAAAGGCATTTAGCCTT
10183115 GTGCCAAATG
Statistics
Matches: 245, Mismatches: 27, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
81 243 0.99
82 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (81 bp):
TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTGGCATTATTGACACCTTTATGCCAA
ATGCACAGCTAGGCAA
Found at i:10183136 original size:134 final size:134
Alignment explanation
Indices: 10182982--10183229 Score: 415
Period size: 134 Copynumber: 1.9 Consensus size: 134
10182972 GACACATTTC
* *
10182982 TGCCAAATGCATAGCTAGGCAATTAATATTTTATTCAAAGGCATTTAGCCTTTTATCTAACTGGC
1 TGCCAAATGCATAGCTAGGCAATTAATATTTTACTCAAAGGCATTTAGCCTTTCATCTAACTGGC
* *
10183047 ATTATTGACACCTTTAAGCCAAATGCACAAGTATGCATTTAATCTTTTACTCAAAGGCATTTAGC
66 ATTATTGACACCTTTAAGCCAAATGCACAACTAAGCATTTAATCTTTTACTCAAAGGCATTTAGC
10183112 CTTG
131 CTTG
* *
10183116 TGCCAAATGCATAGCTAGGCAATTAATGTTTTACTCAAAGGCATTTAGTCTTTCATCTAACTGGC
1 TGCCAAATGCATAGCTAGGCAATTAATATTTTACTCAAAGGCATTTAGCCTTTCATCTAACTGGC
** *
10183181 ATTATTGACACCTTTCTGCCAAATGCACATCTAAGCATTTAATCTTTTA
66 ATTATTGACACCTTTAAGCCAAATGCACAACTAAGCATTTAATCTTTTA
10183230 TTTTAAAACA
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
134 105 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (134 bp):
TGCCAAATGCATAGCTAGGCAATTAATATTTTACTCAAAGGCATTTAGCCTTTCATCTAACTGGC
ATTATTGACACCTTTAAGCCAAATGCACAACTAAGCATTTAATCTTTTACTCAAAGGCATTTAGC
CTTG
Found at i:10200953 original size:45 final size:45
Alignment explanation
Indices: 10200904--10201016 Score: 172
Period size: 45 Copynumber: 2.5 Consensus size: 45
10200894 ACATCCAATT
10200904 ATACCAATTATGCATTGTTATACATTATATATATGGCATCCTTTC
1 ATACCAATTATGCATTGTTATACATTATATATATGGCATCCTTTC
* * * *
10200949 ATACCACTTATGCATTGTTGTACATTATATATATGTCATCCTTTT
1 ATACCAATTATGCATTGTTATACATTATATATATGGCATCCTTTC
*
10200994 ATACCAACTATGCATTGTGTATA
1 ATACCAATTATGCATTGT-TATA
10201017 TAAAAATGCA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
45 57 0.95
46 3 0.05
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (45 bp):
ATACCAATTATGCATTGTTATACATTATATATATGGCATCCTTTC
Found at i:10201429 original size:80 final size:81
Alignment explanation
Indices: 10201042--10201651 Score: 847
Period size: 81 Copynumber: 7.6 Consensus size: 81
10201032 TTTCCTTTAG
* * *
10201042 TCTTTTACTCAACGGAATTTAACCGTTCATCTAAATGGCATAATTGACACCTTTCTTCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
*
10201107 ATAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * * * *
10201123 TATTTTACTCAACGGTATTTAATCGTTAATCTAACTAGTATAATTGACACCTTTTTTCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
* *
10201188 ATAGCTAGACCATTAA
66 ACAGCTAGGCCATTAA
* * *
10201204 TCTTTTACTCAACGGTATTTAACCATTCATCTAACTTGCATAATTGACACCTTTCTGCCAAATGT
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
*
10201269 ACAGCTATGCCATTAA
66 ACAGCTAGGCCATTAA
* * * **
10201285 TATTTTACTCAATGGTATTTAATCGTTCATCTAACTATCATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
10201350 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
** *
10201366 TCTTTTACTC-ACGGTATTTAACTATTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
*
10201430 ACAGTTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* *
10201446 TC-TTTACTCAATGATATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
* *
10201510 ATAGCTAGGTCATTAA
66 ACAGCTAGGCCATTAA
* * *
10201526 TC-TTTACTCAACGGTATTTAACCATTCATCTAACTGG----ATTGACACCTCTCTTCCAAATGC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
10201586 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * *
10201602 TCTTTTACTCAATGATATTTAATCGTTCATCTAACTGGCATAATTGACAC
1 TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACAC
10201652 ATGCCAAATG
Statistics
Matches: 466, Mismatches: 57, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
76 37 0.08
77 31 0.07
79 7 0.02
80 160 0.34
81 231 0.50
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.35
Consensus pattern (81 bp):
TCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
ACAGCTAGGCCATTAA
Found at i:10205545 original size:18 final size:17
Alignment explanation
Indices: 10205517--10205552 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
10205507 TATATTTTAA
10205517 AAACAATAAAATAAATG
1 AAACAATAAAATAAATG
10205534 AAACATATAAAATAAATG
1 AAACA-ATAAAATAAATG
10205552 A
1 A
10205553 CTAAATTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (17 bp):
AAACAATAAAATAAATG
Found at i:10206811 original size:3 final size:3
Alignment explanation
Indices: 10206803--10206884 Score: 65
Period size: 3 Copynumber: 25.7 Consensus size: 3
10206793 GGCCCGTTTG
* * * *
10206803 TAA TAA TAA TTAA TAAA TAT TAG TAA TAAA TAA TAA TTAG TAA TTA TAA
1 TAA TAA TAA -TAA T-AA TAA TAA TAA T-AA TAA TAA -TAA TAA TAA TAA
* *
10206852 TTA TAA TAA TAA TTA TAA TAA TAA TTAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TA
10206885 TTTAAATGAA
Statistics
Matches: 63, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
3 49 0.78
4 14 0.22
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:10206818 original size:7 final size:7
Alignment explanation
Indices: 10206806--10206883 Score: 69
Period size: 7 Copynumber: 12.0 Consensus size: 7
10206796 CCGTTTGTAA
10206806 TAATAAT
1 TAATAAT
*
10206813 TAATAAA
1 TAATAAT
* *
10206820 T-ATTAG
1 TAATAAT
*
10206826 TAATAAA
1 TAATAAT
10206833 TAATAAT
1 TAATAAT
*
10206840 TAGTAAT
1 TAATAAT
10206847 T-ATAAT
1 TAATAAT
10206853 T-ATAA-
1 TAATAAT
10206858 TAATAAT
1 TAATAAT
10206865 T-ATAA-
1 TAATAAT
10206870 TAATAAT
1 TAATAAT
10206877 TAATAAT
1 TAATAAT
10206884 ATTTAAATGA
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
5 2 0.03
6 25 0.43
7 31 0.53
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (7 bp):
TAATAAT
Found at i:10206818 original size:10 final size:10
Alignment explanation
Indices: 10206803--10206889 Score: 68
Period size: 10 Copynumber: 8.3 Consensus size: 10
10206793 GGCCCGTTTG
10206803 TAATAATAAT
1 TAATAATAAT
10206813 TAATAA-ATAT
1 TAATAATA-AT
* *
10206823 TAGTAATAAA
1 TAATAATAAT
* *
10206833 TAATAATTAG
1 TAATAATAAT
*
10206843 TAATTATAATT
1 TAATAATAA-T
10206854 ATAATAATAATT
1 -TAATAATAA-T
10206866 ATAATAATAAT
1 -TAATAATAAT
*
10206877 TAATAATATT
1 TAATAATAAT
10206887 TAA
1 TAA
10206890 ATGAAAAAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
9 1 0.02
10 40 0.63
11 2 0.03
12 20 0.32
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (10 bp):
TAATAATAAT
Found at i:10207679 original size:113 final size:113
Alignment explanation
Indices: 10207101--10211057 Score: 5091
Period size: 113 Copynumber: 35.0 Consensus size: 113
10207091 TAGAGTCATT
* ** * **
10207101 CAAAAGGTTGAATAAGCTCTTCTCATTATGAACTTCTTCTTTTTTCTTCAGATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAT---GAGTTCTTC
* * * * * * * *
10207166 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCA-ATGATGAATTTAAA
63 TCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10207216 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGATGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTC--A-GATGAGTTCTTC
* * * * * * * * *
10207281 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
63 TCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10207332 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAT---GAGTTCTTC
* * * * * * * *
10207397 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTT-AA
63 TCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
* * **
10207447 C-ACAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTTTTTCTTCAGATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAT---GAGTTCTTC
* * * * * * * * *
10207511 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
63 TCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
* * *
10207562 CAAAATGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAATTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
10207627 TTATGAACTTTCTCTGGAAAAGTTGATCCATC-GAATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAG-ATGATGGATTTGAG
*
10207675 CAAAAGGTTGAATAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10207740 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10207788 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10207853 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
* *
10207901 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCCTCCTTCTTCAGATGTGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10207966 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
* *
10208014 CTAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10208079 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10208127 CAAAAGGTTGAAACAAATTCTTCTCATTGTGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 CAAAAGGTTG-AACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
10208192 ATT-TGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
65 ATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
10208240 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
10208305 TTATGAACTTTTTATGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10208353 CAAAAGGTTGAACAAATTCTTCTCATTGTGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10208418 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10208466 CAAAAGGTTGAACAAATTCTTCTCATTGTGAATTTCTTCTT-CTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10208530 -T-TGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGA-TTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10208575 CAAAAGGTTGAACAAATTCTTCTCATTATG-ATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * * * * *
10208639 TTATGAACTTTTTCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10208687 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAT---GAGTTCTTC
* * * * * * * * *
10208752 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
63 TCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
* * *
10208803 CATAAGGTTGAACAAATTCTTCTCATTATGAACTTCTCTT-TT-TTTCTTCATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAA-TT-TCTTCTTCCTTCTTCA-GATGAGTTCTTC
* * * * * * * * *
10208866 TCATTATG-ACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
63 TCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
* *
10208916 CAAAAGGTTTGAACAAA-T-TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAATTC-T-TC
1 CAAAAGG-TTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* *
10208977 ATTATGAACTTTCTCTGGAAAAGTTGATCCATC-GAATGATGGATTTGAG
65 ATTATGAACTTTTTCTGGAAAAGCTGATCCATCAG-ATGATGGATTTGAG
*
10209026 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGATGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTC--A-GATGAGTTCTTC
* * * * * * * * *
10209091 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
63 TCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10209142 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAT---GAGTTCTTC
* * * * ** * * * ***
10209207 TCATTATGAACTCTTCCTGGCAATG-TTTTTCTTCAGATG--CGAGTTCTTCT
63 TCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGA-TT-TGAG
** * * * * * *** ****** * **
10209257 CATTATGAACTCTTCCTG-GCAATGATCCATC-AATGATGAATTTAAAC-AAAAGGTTGA-ACAA
1 CA--A--AA--GGT--TGAACAA--ATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGA
* * ***** * * * ** * * **
10209318 ATT-TT-TCATTATGAA-TTCTTCCTTCTTCAGATGAATTCTTCTCATTATGAACTTTCTCTG
56 GTTCTTCTCATTATGAACTT-TTTCTGGAAAAGCTG-ATCCATCAGATGATGGA--TT-TGAG
* * * ** * * *** *
10209378 GAAAA-GTTGATC-CA-TCGATGATGGATTGA-GCAAAAGGTTGAACAAATT-CTTC-TCATTAT
1 CAAAAGGTTGAACAAATTC--TTCT-CATT-ATG---AA--TT--TCTTCTTCCTTCTTCA-GAT
* ** * *** ***
10209437 GAATTTCTTTCTTC-TTCAGATGAGTTTTCTTCTATGAACTTTTTCTGGAAAAGATCCAGATGAT
54 G-AGTTC-TTC-TCATT---ATGAACTTT-TTCT-GGAA---AAGCT-G-ATCCAT-CAGATGAT
10209501 -GATTTGAG
105 GGATTTGAG
10209509 CAAAAGGTTGAACAAATTC-TCTCATTATGAATTTCTTCTTCCTTCTTCAGAT--GTTCTT-TCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10209570 TTATGAAC-TTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10209617 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCCTCCTTCTTCAGAT--GTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10209680 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
* *
10209728 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTAAGATGTGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10209793 TTATGAA-TTTTTCTGGAAAAGCTGAT-CATCAGATGATGGA-TTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
* *
10209838 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCCTCCTTCTTCAGAT-TGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10209902 TTATGAAC-TTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
10209949 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10210014 TTATG-ACTTTTTCTGGAAAAGCTGAT-CATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10210060 CAAAAGGTTGAACAAATTCTTCTCATTGTGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
10210125 TTATGAACTTTTTCTGGAAAAGTTGATCCATC--A-GATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
10210170 C-AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10210234 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAG-TGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10210281 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10210346 TTATGAACTTTTTCTGGAAAAGC---TCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10210391 CAAAAGGTTGAACAAATTCTTCTCATTATGAA-TTCTTCTT-CTTCTTCAGATGTGTT-TTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10210453 TTATGAAC-TTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10210500 CAAAAGGTTGAACAAATTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGAT-TGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10210563 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10210611 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10210676 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10210724 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCC-T-TTCAGATGTGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10210787 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
10210835 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTT-TTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
10210899 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
66 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
*
10210947 C-AAAGGTTGAAC-AATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
10211010 TTATGAACTTTTTCTGGGAAAAGCTGATCCATCATATGATGGATTTGA
66 TTATGAACTTTTTCT-GGAAAAGCTGATCCATCAGATGATGGATTTGA
10211058 ATCTTTGCTA
Statistics
Matches: 3508, Mismatches: 207, Indels: 257
0.88 0.05 0.06
Matches are distributed among these distances:
106 14 0.00
107 22 0.01
108 56 0.02
109 324 0.09
110 295 0.08
111 554 0.16
112 399 0.11
113 967 0.28
114 208 0.06
115 111 0.03
116 408 0.12
117 12 0.00
118 22 0.01
119 7 0.00
120 5 0.00
121 11 0.00
122 9 0.00
123 15 0.00
124 13 0.00
125 7 0.00
126 2 0.00
127 2 0.00
128 5 0.00
129 6 0.00
130 5 0.00
131 7 0.00
132 8 0.00
133 2 0.00
134 7 0.00
135 5 0.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (113 bp):
CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAG
Found at i:10209256 original size:165 final size:152
Alignment explanation
Indices: 10209082--10209378 Score: 461
Period size: 161 Copynumber: 1.9 Consensus size: 152
10209072 TTCAAATGAT
10209082 GAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAA
1 GAGTTCTTCTCATTATGAACTCTTCCTGGCAA---TGATCCATC-AATGATGAATTTAAACAAAA
10209147 GGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATT
62 GGTTGAACAAATT-TT-TCATTATGAA----TTCTTCCTTCTTCAGATGA--A-TTCTTCTCATT
10209212 ATGAACTCTTC-CTGGCAATGTTTTTCTTCAGATGC
118 ATGAACT-TTCTCTGGCAATGTTTTTCTTCAGATGC
10209247 GAGTTCTTCTCATTATGAACTCTTCCTGGCAATGATCCATCAATGATGAATTTAAACAAAAGGTT
1 GAGTTCTTCTCATTATGAACTCTTCCTGGCAATGATCCATCAATGATGAATTTAAACAAAAGGTT
10209312 GAACAAATTTTTCATTATGAATTCTTCCTTCTTCAGATGAATTCTTCTCATTATGAACTTTCTCT
66 GAACAAATTTTTCATTATGAATTCTTCCTTCTTCAGATGAATTCTTCTCATTATGAACTTTCTCT
10209377 GG
131 GG
10209379 AAAAGTTGAT
Statistics
Matches: 131, Mismatches: 0, Indels: 15
0.90 0.00 0.10
Matches are distributed among these distances:
151 3 0.02
152 22 0.17
153 1 0.01
155 19 0.15
159 10 0.08
160 2 0.02
161 33 0.25
162 9 0.07
165 32 0.24
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.39
Consensus pattern (152 bp):
GAGTTCTTCTCATTATGAACTCTTCCTGGCAATGATCCATCAATGATGAATTTAAACAAAAGGTT
GAACAAATTTTTCATTATGAATTCTTCCTTCTTCAGATGAATTCTTCTCATTATGAACTTTCTCT
GGCAATGTTTTTCTTCAGATGC
Found at i:10209258 original size:49 final size:50
Alignment explanation
Indices: 10209185--10209280 Score: 185
Period size: 49 Copynumber: 1.9 Consensus size: 50
10209175 TTCTTCTTCC
10209185 TTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTT
1 TTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTT
10209235 TTCTTCAGATG-CGAGTTCTTCTCATTATGAACTCTTCCTGGCAATG
1 TTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATG
10209281 ATCCATCAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 35 0.76
50 11 0.24
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.41
Consensus pattern (50 bp):
TTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTT
Found at i:10209767 original size:20 final size:19
Alignment explanation
Indices: 10209744--10209806 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 19
10209734 GTTGAACAAA
10209744 TTCTTCTCATTATGAATTT
1 TTCTTCTCATTATGAATTT
* *
10209763 CTTCTTCCTTC-TTAAG-ATGTG
1 -TTCTT-C-TCATTATGAAT-TT
10209784 TTCTTCTCATTATGAATTT
1 TTCTTCTCATTATGAATTT
10209803 TTCT
1 TTCT
10209807 GGAAAAGCTG
Statistics
Matches: 34, Mismatches: 4, Indels: 11
0.69 0.08 0.22
Matches are distributed among these distances:
18 2 0.06
19 10 0.29
20 14 0.41
21 6 0.18
22 2 0.06
ACGTcount: A:0.17, C:0.19, G:0.08, T:0.56
Consensus pattern (19 bp):
TTCTTCTCATTATGAATTT
Found at i:10209955 original size:332 final size:337
Alignment explanation
Indices: 10209249--10211057 Score: 2972
Period size: 332 Copynumber: 5.5 Consensus size: 337
10209239 TCAGATGCGA
* * * * * *
10209249 GTTCTTCTCATTATGAACTCTTCCTGG-CAA--TGATCCATCA-ATGATGAATTTAAACAAAAGG
1 GTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGG
10209310 TTGAACAAATT-TT-TCATTATGAA----TTCTTCCTTCTTCAGA-TGAATTCTTCTCATTATGA
66 TTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAGTG--TTCTTCTCATTATGA
* *
10209368 ACTTTCTCTGGAAAAGTTGATCCATC-GATGATGGA-TTGAGCAAAAGGTTGAACAAATTCTTCT
129 ACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCT
*
10209431 CATTATGAATTTC-T-TT-CTTCTTCAGATGAGTT-TTCT--TCTATGAACTTTTTCTGGAAAA-
194 CATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCAT-TATGAACTTTTTCTGGAAAAG
10209489 --GAT-C--CAGATGAT-GATTTGAGCAAAAGGTTGAACAAATTC-TCTCATTATGAATTTCTTC
258 CTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTC
10209547 TTCCTTCTTCAGA-T
323 TTCCTTCTTCAGATT
10209561 GTTCTT-TCATTATGAAC-TTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGG
1 GTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGG
*
10209624 TTGAACAAATTCTTCTCATTATGAATTTCTTCCTCCTTCTTCAGA-TGTTCTTCTCATTATGAAC
66 TTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAGTGTTCTTCTCATTATGAAC
10209688 TTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCA
131 TTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCA
*
10209753 TTATGAATTTCTTCTTCCTTCTTAAGATGTGTTCTTCTCATTATGAA-TTTTTCTGGAAAAGCTG
196 TTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTG
*
10209817 AT-CATCAGATGATGGA-TTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCCTC
261 ATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTC
10209880 CTTCTTCAGATT
326 CTTCTTCAGATT
10209892 GTTCTTCTCATTATGAAC-TTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGG
1 GTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGG
*
10209956 TTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG-A
66 TTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGA-GTGTTCTTCTCATTATGAA
10210020 CTTTTTCTGGAAAAGCTGAT-CATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTC
130 CTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTC
* * *
10210084 ATTGTGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGTT
195 ATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCT
10210149 GATCCATC--A-GATGGATTTGAGC-AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTT
260 GATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTT
*
10210210 CCTTCTTCAGATGA
325 CCTTCTTCAGAT-T
10210224 GTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAG-TGATGGATTTGAGCAAAAGG
1 GTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGG
10210288 TTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAA
66 TTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGA-GTGTTCTTCTCATTATGAA
10210353 CTTTTTCTGGAAAAGC---TCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTC
130 CTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTC
10210415 ATTATGAA-TTCTTCTT-CTTCTTCAGATGTGTT-TTCTCATTATGAAC-TTTTCTGGAAAAGCT
195 ATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCT
10210476 GATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAA-TTCTTCTT
260 GATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTT
10210540 CCTTCTTCAGATT
325 CCTTCTTCAGATT
10210553 GTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGG
1 GTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGG
10210618 TTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAA
66 TTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGA-GTGTTCTTCTCATTATGAA
10210683 CTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTC
130 CTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTC
10210748 ATTATGAATTTCTTCTTCC-T-TTCAGATGTGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCT
195 ATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCT
10210811 GATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTT
260 GATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTT
*
10210876 CCTTCTTCAGATGA
325 CCTTCTTCAGAT-T
10210890 GTT-TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGC-AAAGG
1 GTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGG
10210953 TTGAAC-AATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAA
66 TTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGA-GTGTTCTTCTCATTATGAA
*
10211017 CTTTTTCTGGGAAAAGCTGATCCATCATATGATGGATTTGA
130 CTTTTTCT-GGAAAAGCTGATCCATCAGATGATGGATTTGA
10211058 ATCTTTGCTA
Statistics
Matches: 1419, Mismatches: 27, Indels: 79
0.93 0.02 0.05
Matches are distributed among these distances:
310 6 0.00
311 13 0.01
312 6 0.00
313 10 0.01
314 29 0.02
315 2 0.00
316 10 0.01
318 39 0.03
319 9 0.01
320 58 0.04
321 1 0.00
322 2 0.00
323 14 0.01
324 17 0.01
325 6 0.00
326 1 0.00
327 26 0.02
328 14 0.01
329 92 0.06
330 176 0.12
331 144 0.10
332 297 0.21
333 147 0.10
334 108 0.08
335 114 0.08
336 75 0.05
337 3 0.00
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (337 bp):
GTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGG
TTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAGTGTTCTTCTCATTATGAAC
TTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCA
TTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTG
ATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTC
CTTCTTCAGATT
Found at i:10210540 original size:19 final size:19
Alignment explanation
Indices: 10210516--10210569 Score: 51
Period size: 19 Copynumber: 2.8 Consensus size: 19
10210506 GTTGAACAAA
10210516 TTCTTCTCATTATGAATTC
1 TTCTTCTCATTATGAATTC
*
10210535 TTCTTCCTTC-TTCA-G-ATTG
1 TTCTT-C-TCATT-ATGAATTC
10210554 TTCTTCTCATTATGAA
1 TTCTTCTCATTATGAA
10210570 CTTTTTCTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 12
0.68 0.02 0.29
Matches are distributed among these distances:
17 3 0.11
18 4 0.14
19 14 0.50
20 4 0.14
21 3 0.11
ACGTcount: A:0.19, C:0.22, G:0.07, T:0.52
Consensus pattern (19 bp):
TTCTTCTCATTATGAATTC
Found at i:10211478 original size:22 final size:22
Alignment explanation
Indices: 10211453--10211507 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
10211443 CCATAAAGTT
*
10211453 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTGAAAAGAGAATCTA
*
10211475 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
10211497 CCATCTTTGAA
1 TCATCTTTGAA
10211508 GAGTGTAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:10214205 original size:83 final size:83
Alignment explanation
Indices: 10214065--10214329 Score: 460
Period size: 83 Copynumber: 3.2 Consensus size: 83
10214055 CTTATTTCTA
* *
10214065 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGTCC-AACCAGATTAGATAACTCAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTTTG-CCAAACCAGATCAGATAACTCAA
10214129 AGAACACTTCCAGAAGATG
65 AGAACACTTCCAGAAGATG
* *
10214148 CTATGAACAAATTCATCTTCTAAATTCAATGATTGGTTTTGCCAAACCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTTTGCCAAACCAGATCAGATAACTCAAA
10214213 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
*
10214231 CTATGAGCACATTCATCTTCCAAATTCAATGATTGGTTTTGCCAAACCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTTTGCCAAACCAGATCAGATAACTCAAA
10214296 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
*
10214314 CTATGAGCACATTCAT
1 CTATGAGCAAATTCAT
10214330 TTGTTCCATT
Statistics
Matches: 174, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
82 2 0.01
83 172 0.99
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.28
Consensus pattern (83 bp):
CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTTTGCCAAACCAGATCAGATAACTCAAA
GAACACTTCCAGAAGATG
Found at i:10219846 original size:14 final size:14
Alignment explanation
Indices: 10219812--10219865 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
10219802 TTGTGCAATA
* *
10219812 CAAATGCAAAGATG
1 CAAATGTAAATATG
10219826 CCAAATGTAAATATG
1 -CAAATGTAAATATG
10219841 CAAATGTAAA-ATTG
1 CAAATGTAAATA-TG
*
10219855 TAAATGTAAAT
1 CAAATGTAAAT
10219866 TATTTAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
13 1 0.03
14 21 0.62
15 12 0.35
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (14 bp):
CAAATGTAAATATG
Found at i:10222138 original size:14 final size:14
Alignment explanation
Indices: 10222104--10222136 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
10222094 AAAGCTAATA
*
10222104 TTAAAATAATTCAT
1 TTAAAATAAATCAT
10222118 TTAAAATAAAT-AT
1 TTAAAATAAATCAT
10222131 TTAAAA
1 TTAAAA
10222137 ATTTAATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (14 bp):
TTAAAATAAATCAT
Found at i:10222261 original size:18 final size:17
Alignment explanation
Indices: 10222233--10222268 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
10222223 ATATATTTAA
10222233 AAACAATAAAATAAATG
1 AAACAATAAAATAAATG
10222250 AAACATATAAAATAAATG
1 AAACA-ATAAAATAAATG
10222268 A
1 A
10222269 CTAAATTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (17 bp):
AAACAATAAAATAAATG
Done.