Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10629029
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 49 of 51
Found at i:10223540 original size:3 final size:3
Alignment explanation
Indices: 10223532--10223622 Score: 83
Period size: 3 Copynumber: 29.7 Consensus size: 3
10223522 GGCCCGTTTG
* * * *
10223532 TAA TAA TAA TTAA TAA TAA TAT TAG TAA TAAA TAA TAA TAT TAG TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
* * * * *
10223579 TTA TAA TTA TAA TAA TAA TTA TTA TAA TAA TAA TTA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
10223623 TTTAAATGAA
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
3 66 0.92
4 6 0.08
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (3 bp):
TAA
Found at i:10223565 original size:19 final size:19
Alignment explanation
Indices: 10223538--10223579 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
10223528 TTTGTAATAA
*
10223538 TAATTAATAATAATATTAG
1 TAATAAATAATAATATTAG
10223557 TAATAAATAATAATATTAG
1 TAATAAATAATAATATTAG
10223576 TAAT
1 TAAT
10223580 TATAATTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (19 bp):
TAATAAATAATAATATTAG
Found at i:10226831 original size:39 final size:39
Alignment explanation
Indices: 10226750--10226905 Score: 152
Period size: 39 Copynumber: 4.0 Consensus size: 39
10226740 CTGTACTCCA
* * * * * * *
10226750 AGTAAGGGCTTATCCTGTGCACAAAGCAAAGAAGTCTGC
1 AGTAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTAC
* * * * *
10226789 AGTAAGGTCTTATCATGTGCACAAAGTAGAGGAGCCTAC
1 AGTAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTAC
* * *
10226828 AGTAAGGACTTACCTTGAGCACAAAGCCA-CGGAGCCTGC
1 AGTAAGGACTTACCCTGAGCACAAAG-CAGAGGAGCCTAC
*
10226867 GGTAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTAC
1 AGTAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTAC
10226906 GGAAAGCGAT
Statistics
Matches: 97, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.02
39 94 0.97
40 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.18
Consensus pattern (39 bp):
AGTAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTAC
Found at i:10232573 original size:39 final size:37
Alignment explanation
Indices: 10232534--10232620 Score: 113
Period size: 36 Copynumber: 2.3 Consensus size: 37
10232524 CAAAAAGAAG
*
10232534 AGGAGCCTGCAGTAAGGACTTACCCTAAGAACAAGGA
1 AGGAGCCTGCAGTAAGGACTTACCCTAAGAACAAAGA
* * *
10232571 A-GAGCTTGCAGTAAGGACTTTCCCTAAGCACAAAGTA
1 AGGAGCCTGCAGTAAGGACTTACCCTAAGAACAAAG-A
10232608 TAGGAGCCTGCAG
1 -AGGAGCCTGCAG
10232621 AAAGCGGTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
36 30 0.71
37 2 0.05
38 1 0.02
39 9 0.21
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.17
Consensus pattern (37 bp):
AGGAGCCTGCAGTAAGGACTTACCCTAAGAACAAAGA
Found at i:10234524 original size:80 final size:81
Alignment explanation
Indices: 10234386--10234544 Score: 241
Period size: 80 Copynumber: 2.0 Consensus size: 81
10234376 TCCTCACACA
* *
10234386 CTGGCGATAAAGGATATAAGAATGACACGGTGGACTCGGGACGATGCAAGGAACACAATGGTGTG
1 CTGGCGATAAAGGAGATAAGAAGGACACGGTGGACTCGGGACGATGCAAGGAACACAATGGTGTG
* *
10234451 GGTGGTGTCGAAAACG
66 GGAGGTGTCAAAAACG
* *
10234467 CTGGCGATAAAGGAGA-AAGAAGGACACTGGTGGACTC-GGATGCTGCAAGGAACACAATGGTGT
1 CTGGCGATAAAGGAGATAAGAAGGACAC-GGTGGACTCGGGACGATGCAAGGAACACAATGGTGT
10234530 GGGAGGTGTCAAAAA
65 GGGAGGTGTCAAAAA
10234545 TAGAGCAACG
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
80 47 0.66
81 24 0.34
ACGTcount: A:0.33, C:0.14, G:0.36, T:0.16
Consensus pattern (81 bp):
CTGGCGATAAAGGAGATAAGAAGGACACGGTGGACTCGGGACGATGCAAGGAACACAATGGTGTG
GGAGGTGTCAAAAACG
Found at i:10249107 original size:45 final size:44
Alignment explanation
Indices: 10249039--10249182 Score: 216
Period size: 45 Copynumber: 3.2 Consensus size: 44
10249029 TTTAATTTAC
* * *
10249039 TAAATGAAATACATAATGATGCATTATCGTCATGAAAGGACGCCA
1 TAAATGAAATGCATAATGGTGCATTATCG-CATGAAAGGATGCCA
10249084 TAAATGAAATGCATAATGGTGCATTATCAGCATGAAAGGATGCCA
1 TAAATGAAATGCATAATGGTGCATTATC-GCATGAAAGGATGCCA
*
10249129 TAAATGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCCA
1 TAAATGAAATGCATAATGGTGCATTATCG-CATGAAAGGATGCCA
*
10249174 TAGATGAAA
1 TAAATGAAA
10249183 ATAAAGTATA
Statistics
Matches: 92, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
44 1 0.01
45 90 0.98
46 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.21, T:0.24
Consensus pattern (44 bp):
TAAATGAAATGCATAATGGTGCATTATCGCATGAAAGGATGCCA
Found at i:10254512 original size:45 final size:45
Alignment explanation
Indices: 10254463--10254776 Score: 338
Period size: 45 Copynumber: 7.0 Consensus size: 45
10254453 AAATGAATGT
*
10254463 ATAACGGTGCATTATCGACATGAAAGGATATGTCATAAATAAAAT-
1 ATAACGGTGCATTATCGACATGAAAGGA-ATGCCATAAATAAAATC
* *
10254508 ATAACGATGCATTATC-AGCATGAAAGG-ATGCCATAAATGAAATGC
1 ATAACGGTGCATTATCGA-CATGAAAGGAATGCCATAAATAAAAT-C
* *
10254553 ATAACGGTGCATTATCGACATGAAAAG-ATGTCATAAATAAAATGC
1 ATAACGGTGCATTATCGACATGAAAGGAATGCCATAAATAAAAT-C
* * *
10254598 ATAACGGTGCATTATCGGCATGAAAGG-ATACCATAAATGAAATGC
1 ATAACGGTGCATTATCGACATGAAAGGAATGCCATAAATAAAAT-C
** *
10254643 ATAACGGTGCATTATCGGTATGAAAGG-ATGCCATAAATGAAATAC
1 ATAACGGTGCATTATCGACATGAAAGGAATGCCATAAATAAAAT-C
* * *
10254688 ATAACGGTGCATTATCGACATGAAAGG-ATTCAATAAATGAAATCC
1 ATAACGGTGCATTATCGACATGAAAGGAATGCCATAAATAAAAT-C
* * * *
10254733 ATAATGATGCATTATCGGCATGAAAGG-ATGCCATACATGAAAAT
1 ATAACGGTGCATTATCGACATGAAAGGAATGCCATAAAT-AAAAT
10254777 AAAGTATAAT
Statistics
Matches: 237, Mismatches: 27, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
43 14 0.06
44 1 0.00
45 217 0.92
46 5 0.02
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.24
Consensus pattern (45 bp):
ATAACGGTGCATTATCGACATGAAAGGAATGCCATAAATAAAATC
Found at i:10254602 original size:90 final size:88
Alignment explanation
Indices: 10254451--10254776 Score: 404
Period size: 90 Copynumber: 3.6 Consensus size: 88
10254441 ATTTAATTTA
* * *
10254451 ATAAATG-AATGTATAACGGTGCATTATCGACATGAAAGGATATGTCATAAATAAAAT-ATAACG
1 ATAAATGAAATGCATAACGGTGCATTATCGACATGAAA--AGATGCCATAAATAAAATCATAACG
* *
10254514 ATGCATTATCAGCATGAAAGGATGCC
64 GTGCATTATC-GCATGAAAGGATACC
*
10254540 ATAAATGAAATGCATAACGGTGCATTATCGACATGAAAAGATGTCATAAATAAAATGCATAACGG
1 ATAAATGAAATGCATAACGGTGCATTATCGACATGAAAAGATGCCATAAATAAAAT-CATAACGG
10254605 TGCATTATCGGCATGAAAGGATACC
65 TGCATTATC-GCATGAAAGGATACC
** * *
10254630 ATAAATGAAATGCATAACGGTGCATTATCGGTATGAAAGGATGCCATAAATGAAATACATAACGG
1 ATAAATGAAATGCATAACGGTGCATTATCGACATGAAAAGATGCCATAAATAAAAT-CATAACGG
* *
10254695 TGCATTATCGACATGAAAGGATTCA
65 TGCATTATCG-CATGAAAGGATACC
* * * * * *
10254720 ATAAATGAAATCCATAATGATGCATTATCGGCATGAAAGGATGCCATACATGAAAAT
1 ATAAATGAAATGCATAACGGTGCATTATCGACATGAAAAGATGCCATAAAT-AAAAT
10254777 AAAGTATAAT
Statistics
Matches: 213, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
88 17 0.08
89 8 0.04
90 184 0.86
91 4 0.02
ACGTcount: A:0.42, C:0.13, G:0.20, T:0.25
Consensus pattern (88 bp):
ATAAATGAAATGCATAACGGTGCATTATCGACATGAAAAGATGCCATAAATAAAATCATAACGGT
GCATTATCGCATGAAAGGATACC
Found at i:10254705 original size:135 final size:133
Alignment explanation
Indices: 10254450--10254778 Score: 448
Period size: 135 Copynumber: 2.5 Consensus size: 133
10254440 GATTTAATTT
* * * * *
10254450 AATAAAT-GAATGTATAACGGTGCATTATCGACATGAAAGGATATGTCATAAATAAAATATAACG
1 AATAAATAAAATGCATAACGGTGCATTATCGGCATGAAAGGATA--CCATAAATGAAATATAACG
*
10254514 ATGCATTATCAGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTATCGACATGAAAA
64 ATGCATTATCAGCATGAAAGGATGCCATAAATGAAATACATAACGGTGCATTATCGACATGAAAA
10254579 GATGTC
129 GAT-TC
10254585 -ATAAATAAAATGCATAACGGTGCATTATCGGCATGAAAGGATACCATAAATGAAATGCATAACG
1 AATAAATAAAATGCATAACGGTGCATTATCGGCATGAAAGGATACCATAAATGAAAT--ATAACG
* * * *
10254649 GTGCATTATCGGTATGAAAGGATGCCATAAATGAAATACATAACGGTGCATTATCGACATGAAAG
64 ATGCATTATCAGCATGAAAGGATGCCATAAATGAAATACATAACGGTGCATTATCGACATGAAAA
10254714 GATTC
129 GATTC
* * * * * *
10254719 AATAAATGAAATCCATAATGATGCATTATCGGCATGAAAGGATGCCATACATGAAA-ATAA
1 AATAAATAAAATGCATAACGGTGCATTATCGGCATGAAAGGATACCATAAATGAAATATAA
10254779 AGTATAATTA
Statistics
Matches: 174, Mismatches: 16, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
132 4 0.02
133 11 0.06
134 8 0.05
135 151 0.87
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.24
Consensus pattern (133 bp):
AATAAATAAAATGCATAACGGTGCATTATCGGCATGAAAGGATACCATAAATGAAATATAACGAT
GCATTATCAGCATGAAAGGATGCCATAAATGAAATACATAACGGTGCATTATCGACATGAAAAGA
TTC
Found at i:10256495 original size:46 final size:46
Alignment explanation
Indices: 10256427--10256757 Score: 457
Period size: 46 Copynumber: 7.4 Consensus size: 46
10256417 AAATGAATCC
* *
10256427 AAATGAAATGCATGAAAAGATGCATTAAGGCATGCAAGGATTCCAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATTCCAT
* **
10256473 AAATGAAATGCATGAAAGGATGCATTAAGGAATGAAAGGAAGCCAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATTCCAT
* *
10256519 ATATGAAATGCATGAAAGGATGCGTTAAGGCATGAAAGGATGT-CAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGAT-TCCAT
*
10256565 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAA-GA-TGCAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATTCCAT
*
10256609 ---T-AAATGCATGAAAGGATGCATTAAGGCATG-AAGGA-TGCAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATTCCAT
*
10256649 AAATGAAATGCATGAAAGAATGCATTAAGGCATGAAAGGATGT-CAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGAT-TCCAT
* *
10256695 AAATGAAATGCATGAAAGGATACATTAAGGCATGAAAGGATGCCAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATTCCAT
*
10256741 AAATGAAATGCGTGAAA
1 AAATGAAATGCATGAAA
10256758 ATGAAATGCA
Statistics
Matches: 257, Mismatches: 17, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
39 2 0.01
40 36 0.14
41 1 0.00
43 2 0.01
44 31 0.12
45 7 0.03
46 177 0.69
47 1 0.00
ACGTcount: A:0.44, C:0.10, G:0.25, T:0.21
Consensus pattern (46 bp):
AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATTCCAT
Found at i:10256674 original size:176 final size:174
Alignment explanation
Indices: 10256432--10256798 Score: 544
Period size: 176 Copynumber: 2.1 Consensus size: 174
10256422 AATCCAAATG
* *
10256432 AAATGCATGAAAAGATGCATTAAGGCATGCAAGGATTCCATAAATGAAATGCATGAAAGGATGCA
1 AAATGCATGAAAGGATGCATTAAGGCATGCAAGGATTCCATAAATGAAATGCATGAAAGAATGCA
* * * *
10256497 TTAAGGAATGAAAGGAAGCCATATATGAAATGCATGAAAGGATGCGTTAAGGCATGAAAGGATGT
66 TTAAGGAATGAAAGGAAGCCATAAATGAAATGCATGAAAGGATACATTAAGGCATGAAAGGATGC
10256562 CATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAA-GATGCATT
131 CATAAATGAAATGCATGAAA--ATG-A--AAGGCATGAAAGGATGCATT
*
10256610 AAATGCATGAAAGGATGCATTAAGGCATG-AAGGA-TGCATAAATGAAATGCATGAAAGAATGCA
1 AAATGCATGAAAGGATGCATTAAGGCATGCAAGGATTCCATAAATGAAATGCATGAAAGAATGCA
* * *
10256673 TTAAGGCATGAAAGGATGTCATAAATGAAATGCATGAAAGGATACATTAAGGCATGAAAGGATGC
66 TTAAGGAATGAAAGGAAGCCATAAATGAAATGCATGAAAGGATACATTAAGGCATGAAAGGATGC
* *
10256738 CATAAATGAAATGCGTGAAAATGAAATGCATGAAAGGATGCATT
131 CATAAATGAAATGCATGAAAATGAAAGGCATGAAAGGATGCATT
*
10256782 -AAGGCATGAAAGGATGC
1 AAATGCATGAAAGGATGC
10256799 CATAAATAAA
Statistics
Matches: 175, Mismatches: 13, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
171 26 0.15
172 8 0.05
173 1 0.01
174 3 0.02
176 104 0.59
177 5 0.03
178 28 0.16
ACGTcount: A:0.44, C:0.10, G:0.26, T:0.21
Consensus pattern (174 bp):
AAATGCATGAAAGGATGCATTAAGGCATGCAAGGATTCCATAAATGAAATGCATGAAAGAATGCA
TTAAGGAATGAAAGGAAGCCATAAATGAAATGCATGAAAGGATACATTAAGGCATGAAAGGATGC
CATAAATGAAATGCATGAAAATGAAAGGCATGAAAGGATGCATT
Found at i:10256760 original size:61 final size:61
Alignment explanation
Indices: 10256695--10256810 Score: 214
Period size: 61 Copynumber: 1.9 Consensus size: 61
10256685 AGGATGTCAT
*
10256695 AAATGAAATGCATGAAAGGATACATTAAGGCATGAAAGGATGCCATAAATGAAATGCGTGA
1 AAATGAAATGCATGAAAGGATACATTAAGGCATGAAAGGATGCCATAAATAAAATGCGTGA
*
10256756 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATAAAAT
1 AAATGAAATGCATGAAAGGATACATTAAGGCATGAAAGGATGCCATAAATAAAAT
10256811 TAAAGAATAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.47, C:0.09, G:0.23, T:0.20
Consensus pattern (61 bp):
AAATGAAATGCATGAAAGGATACATTAAGGCATGAAAGGATGCCATAAATAAAATGCGTGA
Found at i:10256761 original size:15 final size:15
Alignment explanation
Indices: 10256741--10256772 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
10256731 AGGATGCCAT
*
10256741 AAATGAAATGCGTGA
1 AAATGAAATGCATGA
10256756 AAATGAAATGCATGA
1 AAATGAAATGCATGA
10256771 AA
1 AA
10256773 GGATGCATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.06, G:0.22, T:0.19
Consensus pattern (15 bp):
AAATGAAATGCATGA
Found at i:10257018 original size:55 final size:56
Alignment explanation
Indices: 10256951--10257100 Score: 175
Period size: 54 Copynumber: 2.8 Consensus size: 56
10256941 AGAATTTGTT
*
10256951 CAAAAACTAAGAAATTCATAATAAG-TTATGAATTTCTGTATGGGCACTTTGTGTG
1 CAAAAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTATGGGCACTATGTGTG
* * * **
10257006 CAAAAACTAAG-AATTCTTAATAAGTTTATGAAATTCCT-T-TGTGTGCTATGTGTG
1 CAAAAACTAAGAAATTCATAATAAGTTTATG-AATTTCTGTATGGGCACTATGTGTG
** *
10257060 -GGAAACTAAGAAATTCATATTAAGTTTATGAATTTCTGTAT
1 CAAAAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTAT
10257101 TGGTAGTGGG
Statistics
Matches: 79, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
53 14 0.18
54 41 0.52
55 18 0.23
56 6 0.08
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (56 bp):
CAAAAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTATGGGCACTATGTGTG
Found at i:10257471 original size:81 final size:81
Alignment explanation
Indices: 10257267--10257471 Score: 277
Period size: 81 Copynumber: 2.5 Consensus size: 81
10257257 GTGGCTTAGT
*
10257267 TGTGTATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGTATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
10257332 AGACTAAAAGCCTAAC
66 AGACTAAAAGCCTAAC
* ** * *
10257348 TATGCCTTTGGCAGAAAGGTGTCAATCATGCCAGTTAAATGAAAGGTTAAATACCTTTGGGTAAA
1 TGTGTATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
10257413 AGACTAAATGTCTAA-
66 AGACTAAAAGCCTAAC
* * * * *
10257428 TGGTGTATTTGGCAGAAAGATGCCAATAATGCAAGTTGGATGAA
1 T-GTGTATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
10257472 GGACAAATTG
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
80 1 0.01
81 105 0.99
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.28
Consensus pattern (81 bp):
TGTGTATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
AGACTAAAAGCCTAAC
Found at i:10264076 original size:159 final size:159
Alignment explanation
Indices: 10263742--10264321 Score: 708
Period size: 159 Copynumber: 3.6 Consensus size: 159
10263732 TCTAAAGGCC
* * * * * * * * *
10263742 TTTAACCTTTCCTCCAACTTCCATGATTGACACCTTTTGCCAATGCACAGCTAGGCATTTAAT-G
1 TTTAACCTTTCATCTAACTTGCATGATTGGCACCTTTCGCAAATGCACAACTAGGCATATAATCT
* * * ** *
10263806 TTTACTTAAAGGCATTTAGCC-TCCATCTAACTTGCATGATCGGTACCTTTCTACC-AATACACA
66 TTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGACACCTTTCTACCAAATGCACA
*
10263869 ACTAGGCATTTAATC-TTTACTCAAAGGCA
131 GCTAGGCATTTAATCTTTTACTCAAA-GCA
* * * *
10263898 TTTAGCCTTTCATCTAACTTGCATGATTGGAACATTTAC-CAAATGCACAACAAGGCATATAATC
1 TTTAACCTTTCATCTAACTTGCATGATTGGCACCTTT-CGCAAATGCACAACTAGGCATATAATC
10263962 TTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGACACCTTTCTACCAAATGCAC
65 TTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGACACCTTTCTACCAAATGCAC
*
10264027 AGCTAGGAATTTAATCTTTTACTCAAATGCA
130 AGCTAGGCATTTAATCTTTTACTCAAA-GCA
* * * *
10264058 -TTATCCTTTAATCTAACTTGCATGA-TGTCACCTTTCTGGAAAATGCACAACTAGGCATATAAT
1 TTTAACCTTTCATCTAACTTGCATGATTGGCACCTTTC--GCAAATGCACAACTAGGCATATAAT
* * *
10264121 CTTTTACTCAAAGGCA-TTAGCCTTTCATCTAATTTGCATGATTGTCACCTTTCTGCCAAATGCA
64 CTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGACACCTTTCTACCAAATGCA
*
10264185 CAGCTAGGCATTTTATCTTTTACTCAAAGTCA
129 CAGCTAGGCATTTAATCTTTTACTCAAAG-CA
* * * * *
10264217 TTTAACTTTTCATCTAACTTGAATGTTTTGCACCTTTCTGCAAAAAGCACAACTAGGCATATAAT
1 TTTAACCTTTCATCTAACTTGCATGATTGGCACCTTTC-GC-AAATGCACAACTAGGCATATAAT
* *
10264282 ATTTTACTCAAAGGCATTTAGTCTTTCATCTAACTTGCAT
64 CTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCAT
10264322 TTAATCTTTT
Statistics
Matches: 364, Mismatches: 47, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
156 50 0.14
157 21 0.06
158 38 0.10
159 116 0.32
160 72 0.20
161 46 0.13
162 21 0.06
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (159 bp):
TTTAACCTTTCATCTAACTTGCATGATTGGCACCTTTCGCAAATGCACAACTAGGCATATAATCT
TTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGACACCTTTCTACCAAATGCACA
GCTAGGCATTTAATCTTTTACTCAAAGCA
Found at i:10264267 original size:81 final size:81
Alignment explanation
Indices: 10263735--10264321 Score: 662
Period size: 79 Copynumber: 7.4 Consensus size: 81
10263725 GTCTTCCTCT
* * * * * *
10263735 AAAGGCCTTTAACCTTTCCTCCAACTTCCATGA-TTGACACCTTT-TGCC-AATGCACAGCTAGG
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTTG-CACCTTTCTGCCAAATGCACAACTAGG
* *
10263797 CATTTAAT-GTTTACTT
65 CATTTAATCTTTTACTC
* ** * * *
10263813 AAAGGCATTTAGCC-TCCATCTAACTTGCATGATCGGTACCTTTCTACC-AATACACAACTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTTGCACCTTTCTGCCAAATGCACAACTAGGC
10263876 ATTTAATC-TTTACTC
66 ATTTAATCTTTTACTC
* * * * *
10263891 AAAGGCATTTAGCCTTTCATCTAACTTGCATGA-TTGGAACATT-TACCAAATGCACAACAAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTTGCACCTTTCTGCCAAATGCACAACTAGGC
*
10263954 ATATAATCTTTTACTC
66 ATTTAATCTTTTACTC
* *
10263970 AAAGGCATTTAGCCTTTCATCTAACTTGCATGA-TTGACACCTTTCTACCAAATGCACAGCTAGG
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTTG-CACCTTTCTGCCAAATGCACAACTAGG
*
10264034 AATTTAATCTTTTACTC
65 CATTTAATCTTTTACTC
* * * * **
10264051 AAATGCA-TTATCCTTTAATCTAACTTGCATGATGT-CACCTTTCTGGAAAATGCACAACTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTTGCACCTTTCTGCCAAATGCACAACTAGGC
*
10264114 ATATAATCTTTTACTC
66 ATTTAATCTTTTACTC
* *
10264130 AAAGGCA-TTAGCCTTTCATCTAATTTGCATGA-TTGTCACCTTTCTGCCAAATGCACAGCTAGG
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTTG-CACCTTTCTGCCAAATGCACAACTAGG
*
10264193 CATTTTATCTTTTACTC
65 CATTTAATCTTTTACTC
* * * * * * *
10264210 AAAGTCATTTAACTTTTCATCTAACTTGAATGTTTTGCACCTTTCTGCAAAAAGCACAACTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTTGCACCTTTCTGCCAAATGCACAACTAGGC
* *
10264275 ATATAATATTTTACTC
66 ATTTAATCTTTTACTC
*
10264291 AAAGGCATTTAGTCTTTCATCTAACTTGCAT
1 AAAGGCATTTAGCCTTTCATCTAACTTGCAT
10264322 TTAATCTTTT
Statistics
Matches: 430, Mismatches: 66, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
77 24 0.06
78 82 0.19
79 126 0.29
80 72 0.17
81 123 0.29
82 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (81 bp):
AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTTGCACCTTTCTGCCAAATGCACAACTAGGC
ATTTAATCTTTTACTC
Found at i:10264346 original size:22 final size:22
Alignment explanation
Indices: 10264271--10264346 Score: 73
Period size: 22 Copynumber: 3.4 Consensus size: 22
10264261 AAGCACAACT
* *
10264271 AGGCATATAATATTTTACTCAA
1 AGGCATTTAATCTTTTACTCAA
* *
10264293 AGGCATTTAGTCTTTCA-TCTAA
1 AGGCATTTAATCTTTTACTC-AA
**
10264315 CTTGCATTTAATCTTTTACTCAA
1 -AGGCATTTAATCTTTTACTCAA
10264338 AGGCATTTA
1 AGGCATTTA
10264347 GCTTTTCATC
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
21 2 0.05
22 22 0.54
23 15 0.37
24 2 0.05
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.41
Consensus pattern (22 bp):
AGGCATTTAATCTTTTACTCAA
Found at i:10264347 original size:45 final size:45
Alignment explanation
Indices: 10264273--10264366 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
10264263 GCACAACTAG
10264273 GCATATAATATTTTACTCAAAGGCATTTAG-TCTTTCATCTAACTT
1 GCATATAATATTTTACTCAAAGGCATTTAGCT-TTTCATCTAACTT
* *
10264318 GCATTTAATCTTTTACTCAAAGGCATTTAGCTTTTCATCTAACTT
1 GCATATAATATTTTACTCAAAGGCATTTAGCTTTTCATCTAACTT
10264363 GCAT
1 GCAT
10264367 GATTGGCATT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
45 45 0.98
46 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.43
Consensus pattern (45 bp):
GCATATAATATTTTACTCAAAGGCATTTAGCTTTTCATCTAACTT
Found at i:10264981 original size:73 final size:72
Alignment explanation
Indices: 10264805--10264961 Score: 188
Period size: 73 Copynumber: 2.1 Consensus size: 72
10264795 ACCCCTATGA
* * * * *
10264805 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTCGTATTATGGA
1 TATCGATACTTCTATACTA-GGTACCGATACTCCCTTTCAGTATCGATACAATTCGCATTATAGA
10264870 ATCCATAG
65 ATCCATAG
* * * *
10264878 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATTGATACAATTTAGGCATTCTA
1 TATCGATACTTCTATACTA-GGTACCGATACTCCCTTTCAGTATCGATACAA-TT-CGCATTATA
*
10264943 GAATCCATGG
63 GAATCCATAG
10264953 TATCGATAC
1 TATCGATAC
10264962 GTTTCTCCTA
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
73 46 0.65
74 2 0.03
75 23 0.32
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.35
Consensus pattern (72 bp):
TATCGATACTTCTATACTAGGTACCGATACTCCCTTTCAGTATCGATACAATTCGCATTATAGAA
TCCATAG
Found at i:10265487 original size:689 final size:704
Alignment explanation
Indices: 10264377--10268415 Score: 4625
Period size: 688 Copynumber: 5.8 Consensus size: 704
10264367 GATTGGCATT
* * ** **
10264377 TTTATGCCAAATGCACAGCTAGGTATTTAATCTTTCATTTTAAAACAACTCTTATCCTAGAAATT
1 TTTATGCCAAATGCACAGTTAGGCATTT-ATCTTTCATTTTAAAACAGTTCTTAAACTA-AAATT
10264442 ATT-ATAATATCAATT-C-CACACATTATAAACATATATCATATAAGGTAAAACATACA-TAATT
64 ATTCATAATATCAATTCCACACACATTATAAACATATATCATATAA-GT-AAACA-ACATTAATT
10264503 TAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTCA
126 TAAACATTTGAGGTGGAATTATTGT-AGTCTCCCTCAACCCATATAATTACAATATATGCACTCA
10264568 CCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGAC
190 CCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGAC
* *
10264633 TAAGGAGCTTGGTT-TAATAT-CACAAGCACCCATTTAGTACACATACCATAAAAATGTTAGTAT
255 TAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTA-TA-
* *
10264696 TTTATCTAACATTTATAC-TT--T-ATACTCAAAAGCACTAATACTTTTAATTTCTATTACAACT
318 -TTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACT
*
10264757 TCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCC-CTATGATATCGATACTTCAATA
382 TCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCACTATGATATCGATACTTCTATA
10264821 CTACGATACCGATACTCCCTTTCAGTATCGATACCA-TTC-GTATTATGGAATCCATAGTATCGA
447 CTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGA
*
10264884 TA-C-TTCTATACTATGGTATCGATACTCCCTTTCAGTATTGATACAATTTAGGCATTCTAGAAT
512 TACCTTTCTATACTATGGTATCGATACTCCCTTTCAGTATTGATAC-ATTTAGGCATTCTGGAAT
*
10264947 CCATGGTATCGATACGTTTCTCCTAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTC
576 CCATGGTATCGATACCTTTCTCCTAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTC
*
10265012 AGTATCGATA-C-TTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATC
641 AGTATCGATACCATTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATC
* * * *
10265074 TTTATGCCAAATGCATAGTTAGGCATTTACCTTTCATTTTAAAACAGTTCCTAAAATAAAATTAT
1 TTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAATTAT
*
10265139 T-ATAATATCAATTCCACACATATTATAAACATATATCATATTAAGTAAAC-ACATTAATTTAAA
66 TCATAATATCAATTCCACACACATTATAAACATATATCATA-TAAGTAAACAACATTAATTTAAA
* *
10265202 -ATATTGAGGTGG-ATT-CTG-AGTCTCCCTCAACCCATATAATTACCATATA-G-ACTCACCT-
130 CAT-TTGAGGTGGAATTATTGTAGTCTCCCTCAACCCATATAATTACAATATATGCACTCACCTA
* * *
10265260 ATATACTGTAGTGACGTCTAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTGCCTGACT-CG
194 ATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAG
* * * *
10265324 ATAGCTTGGTTATAATCTACAAAAGCACCCATTTAGTTCCCATACCATACAAATGTTATATTATC
259 -GAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTATATTATC
*
10265389 TAACATTTATACTTTAGCAATACTC-AAAGTACTAATA-TTTTAATTTCTATAACAACTTCAACC
323 TAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACC
*
10265452 TATCTTATAATTCCTGGCTCAGTAGTATCGGTACCCATACTATGATATCGATACTTC--TA-TAC
388 TATCTTATAATTCCTGGCTCAATAGTATCGGTACCC--ACTATGATATCGATACTTCTATACTAC
* * * *
10265514 GATACCGTTACTCCCTTTCAGTATCGATACCATTTCGTTATTCTAGAATCCATAGTATCGATACC
451 GATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACC
* * * * *
10265579 TTTCT-T-CTA--GTATCGATA----C-TTC---A---ATAC-TAT-GGTA-TC-GTACTCCCT-
516 TTTCTATACTATGGTATCGATACTCCCTTTCAGTATTGATACATTTAGGCATTCTGGAATCCATG
* *
10265624 TTCAGTCGATACCTTTCTCCTAGTACCGATACTTCTATTC-ATGGTATCAGTACTCCCTTTCAGT
581 GT-A-TCGATACCTTTCTCCTAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGT
*
10265688 ATCGATA-CATTTCTCCATCTGGATTCCAAGGTATCGATA-C---CTCTTAGTATTGATATT
644 ATCGATACCA-TTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATC
*
10265745 TTTATGCCAAATGCACAGTTAGGCATTTATCTTTCTTTTTAAAACAGTTCTTAAACTAAAAATTA
1 TTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACT-AAAATTA
*
10265810 TTCATAATATCAATTCAACACACATTATAAAC----ATCATATAAGGTAAAACATACATTAATTT
65 TTCATAATATCAATTCCACACACATTATAAACATATATCATATAA-GT-AAACA-ACATTAATTT
10265871 AAACATTTGAGGTGGAATTATTGTAAGTCT--CTCAACCC--ATAATTAC-A-ATATGCACTCAC
127 AAACATTTGAGGTGGAATTATTGT-AGTCTCCCTCAACCCATATAATTACAATATATGCACTCAC
* **
10265930 CTAATATACTGTAGTGACGTCCAACTACTCGCCAACTTTGTCCTTTACCTTTTTCTTA-CTGACT
191 CTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGACT
*
10265994 AAGGA-ATTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATA
256 AAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATG-T--TATA
10266058 TTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTT
318 TTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTT
*
10266123 CAACCTATCTTATAATTCCAGGCTC-A-A-TATCGGTACCCATACTATGATATCGATACTTCTAT
383 CAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCC--ACTATGATATCGATACTTCTAT
*
10266185 ACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTTTGGAATCCATAGTATCG
446 ACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCG
** *
10266250 ATACCTTTCT-T-CTA--GTATCGATAC-CTTTCTTCTAGTATTGATAC--TT---C--TAT---
511 ATACCTTTCTATACTATGGTATCGATACTCCCT-TTC-AGTATTGATACATTTAGGCATTCTGGA
* * * * * * *
10266300 A-CTATGGTATCGATACTCCCTT-T-C-AGTATCGATAC--C-ATT-TA-GGCATTCTGGAAT-C
574 ATCCATGGTATCGATA--CCTTTCTCCTAGTACCGATACATCTATTCTATGGTA-TCAGTACTCC
* * * * * * **
10266355 C-AT-GGTATCGATACCATTCTCCTAGTACCGATACTTCTATCTGGTATC-ATTA-CTCCCT-TT
636 CTTTCAGTATCGATACCATTCTCC-A-T-CTG-GA-TTCCA--AGGTATCGA-TACCTTTCTCTT
*
10266415 CAGTATTGATACC
693 -AGTATTGATATC
* ** * ** * *
10266428 ATT-T-CTCATCTGGATTCCAAGGTATCGATACATTTCTCTTAGTATGATATTTTATGCCAAAGC
1 TTTATGC-CAAATGCA---C-A-GT-T--AGGCATTTATC-T--T-T--CA-TTT-T---AAA--
** * *
10266491 ACAGTTAGGCATTTATCTTCATTTTAAACAGTTCTTAAACTAAAATTATTCATAATATCATTCCA
44 ACAGTT---C--TTA-----A-ACTAAA-A-TTATT---C-ATAA-TA-TC-----A--ATTCCA
*
10266556 CACACATTATAAACATATATCATA-AGGTAAAAACATACATTAATTTAAACATTTGAGGTGGAAT
83 CACACATTATAAACATATATCATATAAGT--AAACA-ACATTAATTTAAACATTTGAGGTGGAAT
*
10266620 TTTTGTAAGTCT-CCTCAACCCATATAA-TAC-A-ATATGCACTCACCTAATATACTGT-GTGAC
145 TATTGT-AGTCTCCCTCAACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGAC
* * *
10266680 GTCCAAATACTCGATAAC-TTGTCCTTGCGC-TTTTCTTACCTGACTAAGGAGCTTGGTTATAAT
209 GTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAAT
*
10266743 ATACACAAGCACCCATTTAGTACACATACCATACAAATG-TATATTATCTAACATTTATAC-TTA
274 CTACACAAGCACCCATTTAGTACACATACCATACAAATGTTATATTATCTAACATTTATACTTTA
10266806 GTAATACTCAAAAGTACTAATACTTTTAA-TTCTATAACAACTTCAACCTATCTTATAATTCCT-
339 GTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTG
*
10266869 G-TCAATAGT-TAGGTTACCCATACTATGATATCGATACTTCTATACTACGATACC-ATACTCCC
404 GCTCAATAGTATCGG-TACCC--ACTATGATATCGATACTTCTATACTACGATACCGATACTCCC
10266931 TTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATA-CTATCGATACTATACT
466 TTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACCT-T---T-CTATACT
* *
10266995 ATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGGATCGATA
526 ATGGTATCGATACTCCCTTTCAGTATTGATA-CATTTAGGCATTCTGGAATCCATGGTATCGATA
10267060 CCTTTCTCCTAGTACCGATACATCTA-T-TATGGTA-C-GTACT-CCTTTCAGTATCGATACCAT
590 CCTTTCTCCTAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCAT
10267120 TCTCCATCTGGATTCCAAGGTATC-ATACCTTT-TCTTAGTATTG--ATC
655 TCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATC
* * * *
10267166 -TTATGACAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAAAAGTTTTTAAACTAAAAATAT
1 TTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAATTAT
*
10267230 TCATAATATCAATTCCACACA-ATTATAAACATATAT-ATA-AGGTAAAACATACATTAATTTAA
66 TCATAATATCAATTCCACACACATTATAAACATATATCATATAAGT-AAACA-ACATTAATTTAA
* *
10267292 ACATTTGAGGTGGAATCATTCTAAGTCTCCCTCAA-CCATATAATTACAATATATGCACTCACCT
129 ACATTTGAGGTGGAATTATTGT-AGTCTCCCTCAACCCATATAATTACAATATATGCACTCACCT
*
10267356 AATATACTGTAGTGACGTCC-ACT-CT---CAACTTTGTCCTTG-CCTTTTTCTTACCTAACTAA
193 AATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAA
* *
10267415 GGAGCTTGGTTATAATCTACACAAGCACCCATTTTGTACGCATACCATACAAATGTTAGTATATT
258 GGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATG-T--TATATT
*
10267480 ATCTAACATTTATACTTTAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCA
320 ATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCA
*
10267545 ACCTATCTTATAATTCCT-GCTCAATAGTATCGGTACCCATACTATGATATCGATACTTGTATAC
385 ACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCC--ACTATGATATCGATACTTCTATAC
* * *
10267609 TACGATACCAATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTAGAATCCATAGTATCGAT
448 TACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGAT
*
10267674 ACCTTTCTTCTAGTATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCA
513 A--------C------C--T--TTCTATACTATGGTATCGATACTCCCTTTCAGTATTGATA-CA
*
10267739 TTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGG
559 TTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACATCTATTCTATGG
* * *
10267804 TATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAACGTATCGATTCCTTT
624 TATCAGTACTCCCTTTCAGTATCGATACCA-TTCTCCATCTGGATTCCAAGGTATCGATACCTTT
10267869 CTCTTAGTATTGATATC
688 CTCTTAGTATTGATATC
* *
10267886 TTTATGCCAAATGCACAGTTAGTCATTTATCTTTCTTTTTAAAACAGTTCTTAAACTAAAAATTA
1 TTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACT-AAAATTA
* *
10267951 TTCATAATATCAATTCAACACACATTATAAACATAAATCATATAAGGT-AA-AACA-TAATTTTA
65 TTCATAATATCAATTCCACACACATTATAAACATATATCATATAA-GTAAACAACATTAA-TTT-
** *
10268013 AAACATTTGAGGTGGAATTATTGTAAACT-CCTAAACCCATATAATTACAATATATGCACTCACC
127 AAACATTTGAGGTGGAATTATTGTAGTCTCCCTCAACCCATATAATTACAATATATGCACTCACC
10268077 ---TATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTG-CCTTTTTC-TA-CTGACTA
192 TAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTA
*
10268136 AGGAACTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATAT
257 AGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATG-T--TATAT
*
10268201 TATCTAACA-TT-TACTTTAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTC
319 TATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTC
10268264 AACCTATCTTATAATTCCTGGCTCAATAGTAT-GGTACCCATACTATGATATCGATACTTCTATA
384 AACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCC--ACTATGATATCGATACTTCTATA
*
10268328 CTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTTTGGAATCCATAGTATCGA
447 CTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGA
10268393 TACCTTTCT-T-CTA--GTATCGATAC
512 TACCTTTCTATACTATGGTATCGATAC
10268416 CTTTCTTCTA
Statistics
Matches: 2915, Mismatches: 194, Indels: 465
0.82 0.05 0.13
Matches are distributed among these distances:
668 3 0.00
669 8 0.00
670 7 0.00
671 116 0.04
672 56 0.02
673 168 0.06
674 84 0.03
675 52 0.02
676 145 0.05
677 2 0.00
678 8 0.00
679 11 0.00
680 16 0.01
681 9 0.00
682 13 0.00
683 14 0.00
684 4 0.00
685 3 0.00
686 1 0.00
687 25 0.01
688 205 0.07
689 134 0.05
690 78 0.03
691 99 0.03
692 50 0.02
693 39 0.01
694 44 0.02
695 85 0.03
696 85 0.03
697 53 0.02
698 16 0.01
699 2 0.00
700 6 0.00
701 5 0.00
702 4 0.00
703 6 0.00
704 4 0.00
705 1 0.00
706 6 0.00
707 1 0.00
708 3 0.00
710 96 0.03
711 3 0.00
712 11 0.00
713 6 0.00
714 8 0.00
715 23 0.01
716 23 0.01
717 12 0.00
718 12 0.00
719 24 0.01
720 174 0.06
721 77 0.03
722 142 0.05
723 42 0.01
724 30 0.01
725 5 0.00
726 97 0.03
727 74 0.03
728 40 0.01
729 2 0.00
730 20 0.01
731 68 0.02
732 87 0.03
733 39 0.01
734 19 0.01
735 3 0.00
736 2 0.00
737 2 0.00
738 8 0.00
739 1 0.00
740 10 0.00
741 13 0.00
743 8 0.00
744 3 0.00
745 15 0.01
746 16 0.01
747 3 0.00
748 22 0.01
749 4 0.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.36
Consensus pattern (704 bp):
TTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAATTAT
TCATAATATCAATTCCACACACATTATAAACATATATCATATAAGTAAACAACATTAATTTAAAC
ATTTGAGGTGGAATTATTGTAGTCTCCCTCAACCCATATAATTACAATATATGCACTCACCTAAT
ATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGA
GCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTATATTATCTAA
CATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTAT
CTTATAATTCCTGGCTCAATAGTATCGGTACCCACTATGATATCGATACTTCTATACTACGATAC
CGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACCTTTCT
ATACTATGGTATCGATACTCCCTTTCAGTATTGATACATTTAGGCATTCTGGAATCCATGGTATC
GATACCTTTCTCCTAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATA
CCATTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATC
Found at i:10265639 original size:58 final size:59
Alignment explanation
Indices: 10265570--10265703 Score: 191
Period size: 58 Copynumber: 2.3 Consensus size: 59
10265560 AATCCATAGT
* *
10265570 ATCGATACCTTTCTTCTAGTATCGATACTTCAATACTATGGTATC-GTACTCCCTTTCAG
1 ATCGATACCTTTCTCCTAGTACCGATACTTCAATAC-ATGGTATCAGTACTCCCTTTCAG
* *
10265629 -TCGATACCTTTCTCCTAGTACCGATACTTCTATTCATGGTATCAGTACTCCCTTTCAG
1 ATCGATACCTTTCTCCTAGTACCGATACTTCAATACATGGTATCAGTACTCCCTTTCAG
*
10265687 TATCGATACATTTCTCC
1 -ATCGATACCTTTCTCC
10265704 ATCTGGATTC
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
57 8 0.12
58 45 0.67
60 14 0.21
ACGTcount: A:0.22, C:0.28, G:0.11, T:0.39
Consensus pattern (59 bp):
ATCGATACCTTTCTCCTAGTACCGATACTTCAATACATGGTATCAGTACTCCCTTTCAG
Found at i:10266267 original size:20 final size:20
Alignment explanation
Indices: 10266242--10266293 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
10266232 TTGGAATCCA
10266242 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
10266262 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
10266282 TAGTATTGATAC
1 TAGTATCGATAC
10266294 TTCTATACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:10266315 original size:115 final size:115
Alignment explanation
Indices: 10266174--10266388 Score: 340
Period size: 115 Copynumber: 1.9 Consensus size: 115
10266164 CTATGATATC
* * *
10266174 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTTTGGAAT
1 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* * *
10266239 CCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTAGTATT
66 CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
* * *
10266289 GATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
1 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
*
10266354 CCATGGTATCGATACCATTCTCCTAGTACCGATAC
66 CCATAGTATCGATACCATTCTCCTAGTACCGATAC
10266389 TTCTATCTGG
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
115 90 1.00
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.37
Consensus pattern (115 bp):
GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
Found at i:10266426 original size:92 final size:92
Alignment explanation
Indices: 10266264--10266471 Score: 253
Period size: 92 Copynumber: 2.2 Consensus size: 92
10266254 CTTTCTTCTA
* * **
10266264 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTAT
1 GTATCGATACCATTCTCCTAGTACCGATACTTCTATAC-ATGGTATCGATACTCCCTTTCAGTAT
* *
10266329 CGATACCATTTAGGCATTCTGGAATCCATG
65 CGATACCATTT-CGCA-TCTGGAATCCAAG
10266359 GTATCGATACCATTCTCCTAGTACCGATACTTCTAT-C-TGGTATC-ATTACTCCCTTTCAGTAT
1 GTATCGATACCATTCTCCTAGTACCGATACTTCTATACATGGTATCGA-TACTCCCTTTCAGTAT
* * *
10266421 TGATACCATTTCTCATCTGGATTCCAAG
65 CGATACCATTTCGCATCTGGAATCCAAG
*
10266449 GTATCGATA-CATTTCTCTTAGTA
1 GTATCGATACCA-TTCTCCTAGTA
10266472 TGATATTTTA
Statistics
Matches: 101, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
89 2 0.02
90 30 0.30
91 3 0.03
92 33 0.33
94 1 0.01
95 32 0.32
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (92 bp):
GTATCGATACCATTCTCCTAGTACCGATACTTCTATACATGGTATCGATACTCCCTTTCAGTATC
GATACCATTTCGCATCTGGAATCCAAG
Found at i:10267692 original size:688 final size:703
Alignment explanation
Indices: 10265629--10268415 Score: 3245
Period size: 720 Copynumber: 3.9 Consensus size: 703
10265619 TCCCTTTCAG
*
10265629 TCGATACCTTTCTCCTAGTACCGATACTTCTATTCATGGTATCAGTACTCCCTTTCAGTATCGAT
1 TCGATACCTTTCTCCTAGTACCGATACATCTATT-ATGGTATCAGTACTCCCTTTCAGTATCGAT
*
10265694 A-CATTTCTCCATCTGGATTCCAAGGTATCGATACC---TCTTAGTATTGATATTTTTATGCCAA
65 ACCA-TTCTCCATCTGGATTCCAAGGTATCGATACCTTTTCTTAGTATTGA-ATCTTTATGCCAA
* *
10265755 ATGCACAGTTAGGCATTTATCTTTCTTTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATAT
128 ATGCACAGTTAGGCATTTATCTTTCATTTTAAAAAAGTTCTTAAACTAAAAATTATTCATAATAT
* *
10265820 CAATTCAACACACATTATAAACAT-CATATAAGGTAAAACATACATTAATTTAAACATTTGAGGT
193 CAATTCCACACACATTATAAACATATATATAAGGTAAAACATACATTAATTTAAACATTTGAGGT
10265884 GGAATTATTGTAAGTCT-CTCAACCC--ATAATTAC-A-ATATGCACTCACCTAATATACTGTAG
258 GGAATTATTGTAAGTCTCCTCAACCCATATAATTACAATATATGCACTCACCTAATATACTGTAG
* *
10265944 TGACGTCCAACTACTCGCCAACTTTGTCCTTTACCTTTTTCTTA-CTGACTAAGGA-ATTGGTTA
323 TGACGTCCAACTACT--CCAACTTTGTCC-TTGCCTTTTTCTTACCTGACTAAGGAGCTTGGTTA
10266007 TAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTA
385 TAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTA
*
10266072 TACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATA
450 TACTTTAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATA
*
10266137 ATTCCAGGCTC-A-A-TATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGAT
515 ATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGAT
*
10266199 ACTCCCTTTCAGTATCGATACCATTTCGGTATTTTGGAATCCATAGTATCGATACCTTTCT-T-C
580 ACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACCTTTCTATAC
** * ** *
10266262 TA-GTATCGATA---CCTTTC--T-TC--TAGTATTGATAC-TTCT---ATACTATGGTA
645 TAGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT-CCATGGTA
* * * * * * * *
10266309 TCGATACTCCCTT-T-C-AGTATCGATAC--C-ATT-TAGGCATTCTGGAAT-CC-AT-GGTATC
1 TCGATA--CCTTTCTCCTAGTACCGATACATCTATTAT-GGTA-TCAGTACTCCCTTTCAGTATC
* * * * *
10266364 GATACCATTCTCCTAGTACCGATACTTCTATCTGGTATC-ATTACTCCCTTTC--AGTATTGATA
62 GATACCATTCTCC-A-T-CTG-GA-TTCCA--AGGTATCGA-TA--CCTTTTCTTAGTATTGA-A
* * ** * ** * *
10266426 CCATT-T-CTCATCTGGATTCCAAGGTATCGATACATTTCTCTTAGTATGATATTTTATGCCAAA
116 TCTTTATGC-CAAATGCA---C-A-GT-T--AGGCATTTATC-T--T-T--CATTTTA----AAA
* * * *
10266489 GCACAGTTAGGCATTTATCTTCATTTTAAACAGTTCTTAAACTAAAATTATTCATAATAT-CATT
162 --A-AGTT---C-TTAAAC-T-A----AAA-A-TTATT---C-ATAA-TA-TC--AAT-TCCA--
* *
10266553 CCACACACATTATAAACATATATCATAAGGTAAAAACATACATTAATTTAAACATTTGAGGTGGA
201 -CACACA-TTA-TAAACATATAT-ATAAGGT-AAAACATACATTAATTTAAACATTTGAGGTGGA
*
10266618 ATTTTTGTAAGTCTCCTCAACCCATATAA-TAC-A-ATATGCACTCACCTAATATACTGT-GTGA
261 ATTATTGTAAGTCTCCTCAACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGA
* *
10266679 CGTCCAAATACTCGATAAC-TTGTCCTTGCGC-TTTTCTTACCTGACTAAGGAGCTTGGTTATAA
326 CGTCCAACTACTC--CAACTTTGTCCTTGC-CTTTTTCTTACCTGACTAAGGAGCTTGGTTATAA
*
10266742 TATACACAAGCACCCATTTAGTACACATACCATACAAA---T-GTATATTATCTAACATTTATAC
388 TCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATAC
*
10266803 -TTAGTAATACTCAAAAGTACTAATACTTTTAA-TTCTATAACAACTTCAACCTATCTTATAATT
453 TTTAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATT
*
10266866 CCT-G-TCAATAGT-TAGGTTACCCATACTATGATATCGATACTTCTATACTACGATACC-ATAC
518 CCTGGCTCAATAGTATCGG-TACCCATACTATGATATCGATACTTCTATACTACGATACCGATAC
10266927 TCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATA-CTATCGATACTA
582 TCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACCT-T---T-CTA
*
10266991 TACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGGA
642 TACTA-GGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGTA
10267054 TCGATACCTTTCTCCTAGTACCGATACATCTATTATGGTA-C-GTACT-CCTTTCAGTATCGATA
1 TCGATACCTTTCTCCTAGTACCGATACATCTATTATGGTATCAGTACTCCCTTTCAGTATCGATA
*
10267116 CCATTCTCCATCTGGATTCCAAGGTATC-ATACCTTTTCTTAGTATTG-ATC-TTATGACAAATG
66 CCATTCTCCATCTGGATTCCAAGGTATCGATACCTTTTCTTAGTATTGAATCTTTATGCCAAATG
*
10267178 CACAGTTAGGCATTTATCTTTCATTTTAAAAAAGTTTTTAAACTAAAAA-TATTCATAATATCAA
131 CACAGTTAGGCATTTATCTTTCATTTTAAAAAAGTTCTTAAACTAAAAATTATTCATAATATCAA
10267242 TTCCACACA-ATTATAAACATATATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGA
196 TTCCACACACATTATAAACATATATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGA
* *
10267306 ATCATTCTAAGTCTCCCTCAA-CCATATAATTACAATATATGCACTCACCTAATATACTGTAGTG
261 ATTATTGTAAGTCT-CCTCAACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTG
*
10267370 ACGTCC-ACT-CT-CAACTTTGTCCTTGCCTTTTTCTTACCTAACTAAGGAGCTTGGTTATAATC
325 ACGTCCAACTACTCCAACTTTGTCCTTGCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATC
* *
10267432 TACACAAGCACCCATTTTGTACGCATACCATACAAATGTTAGTATATTATCTAACATTTATACTT
390 TACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTT
10267497 TAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCC
455 TAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCC
* *
10267562 T-GCTCAATAGTATCGGTACCCATACTATGATATCGATACTTGTATACTACGATACCAATACTCC
520 TGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCC
* *
10267626 CTTTCAGTATCGATACCATTTCGGTATTCTAGAATCCATAGTATCGATACCTTTCTTCTAGTATC
585 CTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATA--------C------C
10267691 GATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
636 --T--TTCTATACTA-GGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
10267756 CCATGGTA
696 CCATGGTA
*
10267764 TCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGA
1 TCGATACCTTTCTCCTAGTACCGATACATCTA-T-TATGGTATCAGTACTCCCTTTCAGTATCGA
* * *
10267829 TACCATTTCTCCATATGGATTCCAACGTATCGATTCCTTTCTCTTAGTATTGATATCTTTATGCC
64 TACCA-TTCTCCATCTGGATTCCAAGGTATCGATACCTTT-TCTTAGTATTGA-ATCTTTATGCC
* * *
10267894 AAATGCACAGTTAGTCATTTATCTTTCTTTTTAAAACAGTTCTTAAACTAAAAATTATTCATAAT
126 AAATGCACAGTTAGGCATTTATCTTTCATTTTAAAAAAGTTCTTAAACTAAAAATTATTCATAAT
* *
10267959 ATCAATTCAACACACATTATAAACATAAATCATATAAGGTAAAACATA-ATT--TTAAAACATTT
191 ATCAATTCCACACACATTATAAACAT--AT-ATATAAGGTAAAACATACATTAATTTAAACATTT
* *
10268021 GAGGTGGAATTATTGTAA-ACTCCTAAACCCATATAATTACAATATATGCACTCACC---TATAC
253 GAGGTGGAATTATTGTAAGTCTCCTCAACCCATATAATTACAATATATGCACTCACCTAATATAC
*
10268082 TGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCTTTTTC-TA-CTGACTAAGGAACTTG
318 TGTAGTGACGTCCAACTACTC--CAACTTTGTCCTTGCCTTTTTCTTACCTGACTAAGGAGCTTG
10268145 GTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACA
381 GTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACA
10268210 -TT-TACTTTAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCT
446 TTTATACTTTAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCT
10268273 TATAATTCCTGGCTCAATAGTAT-GGTACCCATACTATGATATCGATACTTCTATACTACGATAC
511 TATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATAC
*
10268337 CGATACTCCCTTTCAGTATCGATACCATTTCGGTATTTTGGAATCCATAGTATCGATACCTTTCT
576 CGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACCTTTCT
10268402 -T-CTA-GTATCGATAC
641 ATACTAGGTATCGATAC
10268416 CTTTCTTCTA
Statistics
Matches: 1819, Mismatches: 115, Indels: 328
0.80 0.05 0.15
Matches are distributed among these distances:
673 15 0.01
674 5 0.00
675 6 0.00
676 10 0.01
677 2 0.00
678 4 0.00
679 11 0.01
680 15 0.01
681 2 0.00
682 12 0.01
683 12 0.01
685 3 0.00
686 1 0.00
687 6 0.00
688 129 0.07
689 16 0.01
690 22 0.01
691 29 0.02
692 32 0.02
693 36 0.02
694 36 0.02
695 48 0.03
696 67 0.04
698 12 0.01
699 2 0.00
700 9 0.00
701 2 0.00
702 4 0.00
703 4 0.00
704 4 0.00
706 3 0.00
707 7 0.00
708 1 0.00
709 1 0.00
710 96 0.05
711 4 0.00
712 9 0.00
713 9 0.00
714 7 0.00
715 23 0.01
716 23 0.01
717 11 0.01
718 13 0.01
719 21 0.01
720 177 0.10
721 79 0.04
722 130 0.07
723 43 0.02
724 31 0.02
725 9 0.00
726 117 0.06
727 75 0.04
728 29 0.02
729 5 0.00
730 29 0.02
731 65 0.04
732 77 0.04
733 30 0.02
734 14 0.01
735 1 0.00
737 8 0.00
738 14 0.01
739 1 0.00
740 11 0.01
741 7 0.00
742 7 0.00
743 12 0.01
744 2 0.00
745 15 0.01
746 18 0.01
747 3 0.00
748 19 0.01
749 6 0.00
750 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (703 bp):
TCGATACCTTTCTCCTAGTACCGATACATCTATTATGGTATCAGTACTCCCTTTCAGTATCGATA
CCATTCTCCATCTGGATTCCAAGGTATCGATACCTTTTCTTAGTATTGAATCTTTATGCCAAATG
CACAGTTAGGCATTTATCTTTCATTTTAAAAAAGTTCTTAAACTAAAAATTATTCATAATATCAA
TTCCACACACATTATAAACATATATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGA
ATTATTGTAAGTCTCCTCAACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGA
CGTCCAACTACTCCAACTTTGTCCTTGCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCT
ACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTT
AGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCT
GGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCC
TTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACCTTTCTATACTAGGTA
TCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGTA
Found at i:10267718 original size:95 final size:94
Alignment explanation
Indices: 10267592--10267837 Score: 366
Period size: 95 Copynumber: 2.6 Consensus size: 94
10267582 CATACTATGA
* * * * *
10267592 TATCGATACTTGTATACTACGATACCAATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTA
1 TATCGATACTTCTATACTATGGTATC-ATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTA
*
10267657 GAATCCATAGTATCGATACCTTTCTTCTAG
65 GAATCCATAGTATCGATACCTTTCTCCTAG
* *
10267687 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATC-ATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTA
*
10267752 GAATCCATGGTATCGATACCTTTCTCCTAG
65 GAATCCATAGTATCGATACCTTTCTCCTAG
* *
10267782 TACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCA-TACTCCCTTTCAGTATCGATACCATTTC
10267838 TCCATATGGA
Statistics
Matches: 137, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
94 1 0.01
95 136 0.99
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (94 bp):
TATCGATACTTCTATACTATGGTATCATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTAG
AATCCATAGTATCGATACCTTTCTCCTAG
Found at i:10268409 original size:20 final size:20
Alignment explanation
Indices: 10268384--10268435 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
10268374 TTGGAATCCA
10268384 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
10268404 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
10268424 TAGTATTGATAC
1 TAGTATCGATAC
10268436 TTCTATACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:10268505 original size:95 final size:94
Alignment explanation
Indices: 10268406--10268623 Score: 278
Period size: 95 Copynumber: 2.3 Consensus size: 94
10268396 CTTTCTTCTA
10268406 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTACCGA-TACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTACC-ATTACTCCCTTTCAGTA
* *
10268470 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTTAGCCA-TCTGGAATCCAAG
* * ** * * *
10268501 GTATCGATACCATTCTCCTAGTACCGATACTTTTATTCTATGGTATCATTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTACCATTACTCCCTTTCAGTAT
* ** *
10268566 TGATACCATTTCTCCATCTGGATTCCAAG
66 CGATACCATTTAGCCATCTGGAATCCAAG
10268595 GTATCGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
10268624 TCTTTATGTC
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
93 1 0.01
94 35 0.34
95 68 0.65
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.39
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTACCATTACTCCCTTTCAGTAT
CGATACCATTTAGCCATCTGGAATCCAAG
Found at i:10268522 original size:115 final size:115
Alignment explanation
Indices: 10268316--10268540 Score: 351
Period size: 115 Copynumber: 2.0 Consensus size: 115
10268306 CTATGATATC
* * *
10268316 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTTTGGAAT
1 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* * * *
10268381 CCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTAGTATT
66 CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTATTCTAGTATT
* *
10268431 GATACTTCTATACTATGGTACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
1 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* *
10268496 CCATGGTATCGATACCATTCTCCTAGTACCGATACTTTTATTCTA
66 CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTATTCTA
10268541 TGGTATCATT
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
115 99 1.00
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (115 bp):
GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTATTCTAGTATT
Found at i:10268573 original size:740 final size:745
Alignment explanation
Indices: 10266988--10269158 Score: 3304
Period size: 740 Copynumber: 3.0 Consensus size: 745
10266978 ACTATCGATA
*
10266988 CTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGG
1 CTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGT
*
10267053 ATCGATACCTTTCTCCTAGTACCGATACATCTA-T-TATGGTA-C-GTACT-CCTTTCAGTATCG
66 ATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCG
10267113 ATACCA-TTCTCCATCTGGATTCCAAGGTATC-ATACCTTT-TCTTAGTATTG--ATC-TTATGA
131 ATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGA
* *
10267172 CAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAAAAGTTTTTAAACTAAAAA-TATTCATAA
196 CAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAA
10267236 TATCAATTCCACACA-ATTATAAACAT--AT-ATATAAGGTAAAACATACATTAATTTAAACATT
261 TATCAATTCCACACACATTATAAACATAAATCATATAAGGTAAAACATACATT-ATTTAAACATT
* * *
10267297 TGAGGTGGAATCATTCTAAGTCTCCCTCAA-CCATATAATTACAATATATGCACTCACCTAATAT
325 TGAGGTGGAATTATTGTAAGTCTCCCTAAACCCATATAATTACAATATATGCACTCACC--ATAT
*
10267361 ACTGTAGTGACGTCC-ACT-CT---CAACTTTGTCCTTGCCTTTTTCTTACCTAACTAAGGAGCT
388 ACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCTTTTTC-TACCTGACTAAGGAGCT
* *
10267421 TGGTTATAATCTACACAAGCACCCATTTTGTACGCATACCATACAAATGTTAGTATATTATCTAA
452 TGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAA
10267486 CATTTATACTTTAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTAT
517 CATTTATACTTTAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTAT
*
10267551 CTTATAATTCCT-GCTCAATAGTATCGGTACCCATACTATGATATCGATACTTGTATACTACGAT
582 CTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGAT
*
10267615 ACCAATACTCCCTTTCAGTATCGATACCATTTCGGTA-T---T-C-TAG-A---AT--C---C-A
647 ACCAATACTCCCTTTCAGTATCGATACCATTTCGGTATTGGATCCATAGTATCGATACCTTTCTC
10267664 TAGTATCGATACCTTTCTTCTAGTATCGATACTT
712 TAGTATCGATACCTTTCTTCTAGTATCGATACTT
10267698 CTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGT
1 CTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGT
10267763 ATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCG
66 ATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCG
* * * *
10267828 ATACCATTTCTCCATATGGATTCCAACGTATCGATTCCTTTCTCTTAGTATTGATATCTTTATGC
131 ATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGA
* *
10267893 CAAATGCACAGTTAGTCATTTATCTTTCTTTTTAAAACAGTTCTTAAACTAAAAATTATTCATAA
196 CAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAA
* *
10267958 TATCAATTCAACACACATTATAAACATAAATCATATAAGGTAAAACATA-ATT-TTAAAACATTT
261 TATCAATTCCACACACATTATAAACATAAATCATATAAGGTAAAACATACATTATTTAAACATTT
*
10268021 GAGGTGGAATTATTGTAA-ACT-CCTAAACCCATATAATTACAATATATGCACTCACC-TATACT
326 GAGGTGGAATTATTGTAAGTCTCCCTAAACCCATATAATTACAATATATGCACTCACCATATACT
*
10268083 GTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCTTTTTCTA-CTGACTAAGGAACTTGGT
391 GTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCTTTTTCTACCTGACTAAGGAGCTTGGT
10268147 TATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACA-T
456 TATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATT
10268211 T-TACTTTAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTA
521 TATACTTTAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTA
*
10268275 TAATTCCTGGCTCAATAGTAT-GGTACCCATACTATGATATCGATACTTCTATACTACGATACCG
586 TAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCA
10268339 ATACTCCCTTTCAGTATCGATACCATTTCGGTATTTTGGAATCCATAGTATCGATACCTTTCTTC
651 ATACTCCCTTTCAGTATCGATACCATTTCGGTA--TTGG-ATCCATAGTATCGATACCTTTC-TC
*
10268404 TAGTATCGATACCTTTCTTCTAGTATTGATACTT
712 TAGTATCGATACCTTTCTTCTAGTATCGATACTT
*
10268438 CTATACTATGGTACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGT
1 CTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGT
* * * *
10268503 ATCGATACCATTCTCCTAGTACCGATACTTTTATTCTATGGTATCATTACTCCCTTTCAGTATTG
66 ATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCG
*
10268568 ATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGT
131 ATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGA
10268633 CAAATGCACCAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATCATATTC-
196 CAAATGCA-CAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAAT--TATTCA
*
10268697 --ATATCAATTCCACACACATTATAAACGTATAATC---TAA---AAAACATACATTAATTTAAA
258 TAATATCAATTCCACACACATTATAAACATA-AATCATATAAGGTAAAACATACATT-ATTTAAA
*
10268754 CATTTGAGGTGGAATTATTGTAAGTCTCCCTTAACCCATATAATTACAATATATGCA--CACCTA
321 CATTTGAGGTGGAATTATTGTAAGTCTCCCTAAACCCATATAATTACAATATATGCACTCACC--
10268817 ATATACTGTAGTGACGTCCAACTA-TCGACAACTTTGTCCTTGCCCTTTTT-TACCTGACTAAGG
384 ATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTG-CCTTTTTCTACCTGACTAAGG
*
10268880 AGCTTGGTTATAATATACACAAGCACCCATTTAGTACACATACCATACAAA---T-GTATATTAT
448 AGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTAT
* *
10268941 CTAACATTTATACTTTAGTAATACTAAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAAC
513 CTAACATTTATACTTTAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAAC
* * * *
10269006 CTATCTTTTAATTCCTGGCTCAATTGTATGGGTACCCATACTCTGATATCGATACTTCTATACTA
578 CTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTA
***
10269071 CGATACCAATACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCA-AGGTATCGATAC
643 CGATACCAATACTCCCTTTCAGTATCGATACCATTTCGGTAT-TGGA-TCCATA-GTATCGATAC
* *
10269135 CTTTCTCTTAGTATTGATATCTTT
705 CTTTCTC-TAGTATCGATACCTTT
10269159 ATGACAAATG
Statistics
Matches: 1344, Mismatches: 53, Indels: 99
0.90 0.04 0.07
Matches are distributed among these distances:
710 96 0.07
711 1 0.00
712 7 0.01
713 1 0.00
714 5 0.00
715 19 0.01
716 23 0.02
717 7 0.01
718 11 0.01
719 18 0.01
720 151 0.11
721 77 0.06
722 130 0.10
723 40 0.03
724 22 0.02
725 5 0.00
726 17 0.01
727 1 0.00
728 1 0.00
729 3 0.00
730 1 0.00
733 2 0.00
735 9 0.01
736 3 0.00
737 15 0.01
738 44 0.03
739 118 0.09
740 373 0.28
741 139 0.10
743 5 0.00
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (745 bp):
CTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGT
ATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCG
ATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGA
CAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAA
TATCAATTCCACACACATTATAAACATAAATCATATAAGGTAAAACATACATTATTTAAACATTT
GAGGTGGAATTATTGTAAGTCTCCCTAAACCCATATAATTACAATATATGCACTCACCATATACT
GTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCTTTTTCTACCTGACTAAGGAGCTTGGT
TATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATT
TATACTTTAGAAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTA
TAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCA
ATACTCCCTTTCAGTATCGATACCATTTCGGTATTGGATCCATAGTATCGATACCTTTCTCTAGT
ATCGATACCTTTCTTCTAGTATCGATACTT
Found at i:10269571 original size:529 final size:521
Alignment explanation
Indices: 10268550--10269634 Score: 1720
Period size: 529 Copynumber: 2.1 Consensus size: 521
10268540 ATGGTATCAT
*
10268550 TACTCCCTTTCAGTATTGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTA
1 TACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTA
*
10268615 GTATTGATATCTTTATGTCAAATGCACCAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTA
66 GTATTGATATCTTTATGACAAATG--CC---TAGGCATTTATCTTTCATTTTAAAACAGTTCTTA
*
10268680 AACTAAAAATCATATTCATATCAATTCCACACACATTATAAACGTATAATCTAAAAAACATACAT
126 AACTAAAAATCATA-T-ATATCAATTCCACACACATTATAAACATATAATCTAAAAAACATACAT
* * *
10268745 TAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTTAACCCATATAATTACAATATATGC
189 TAATTTAAACATTTGAGGTGGAATCATTCTAAGTCTCCCTCAACCCATATAATTACAATATATGC
10268810 ACACCTAATATACTGTAGTGACGTCCAACTATCGACAACTTTGTCCTTGCCCTTTTTTACCTGAC
254 ACACCTAATATACTGTAGTGACGTCCAACTATCGACAACTTTGTCCTTGCCCTTTTTTACCTGAC
10268875 TAAGGAGCTTGGTTATAATATACACAAGCACCCATTTAGTACACATACCATACAAATGTATATTA
319 TAAGGAGCTTGGTTATAATATACACAAGCACCCATTTAGTACACATACCATACAAATGTATATTA
10268940 TCTAACATTTATACTTTAGTAATACTAAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAA
384 TCTAACATTTATACTTTAGTAATACTAAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAA
* * * * *
10269005 CCTATCTTTTAATTCCTGGCTCAATTGTATGGGTACCCATACTCTGATATCGATACTTCTATACT
449 CCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCAAACTATGATATCGATACTTC--TACT
10269070 ACGATACCAA
512 ACGATACCAA
10269080 TACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTA
1 TACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTA
* *
10269145 GTATTGATATCTTTATGACAAATG-C-AGGCATTTATCTTTCATTTTAAAACAGTTTTTTAACTA
66 GTATTGATATCTTTATGACAAATGCCTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTA
* *
10269208 AATTATTCATA-ATATC-A-T-CACACACA-TATAAA-ATAT-ATCATATAAGGTAACATACATT
131 AA--AATCATATATATCAATTCCACACACATTATAAACATATAATC-TA-AA--AAACATACATT
10269266 AATTTAAACATTTGAGGTGGAATCATTCTAAGTCTCCCTCAACCCATATAATTACAATATATGCA
190 AATTTAAACATTTGAGGTGGAATCATTCTAAGTCTCCCTCAACCCATATAATTACAATATATGCA
10269331 CTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACC
255 --CACCTAATATACTGTAGTGACGTCCAACTA-TCGACAACTTTGTCCTTGCCC-TTTT-TTACC
* * *
10269396 TGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACGCATATCATACAAATGTTA
315 TGACTAAGGAGCTTGGTTATAATATACACAAGCACCCATTTAGTACACATACCATACAAA---T-
*
10269461 GTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAAC
376 GTATATTATCTAACATTTATACTTTAGTAATACTAAAAAGTACTAATACTTTTAATTTCTATAAC
10269526 AACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCAAACTATGATATCGATACT
441 AACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCAAACTATGATATCGATACT
10269591 TCTACTACGATACCAA
506 TCTACTACGATACCAA
10269607 TACTCCCTTTCAGTATCGATACCATTTC
1 TACTCCCTTTCAGTATCGATACCATTTC
10269635 GGTATCTAGA
Statistics
Matches: 521, Mismatches: 19, Indels: 33
0.91 0.03 0.06
Matches are distributed among these distances:
516 3 0.01
517 5 0.01
518 8 0.02
519 8 0.02
520 73 0.14
521 1 0.00
522 35 0.07
523 59 0.11
524 4 0.01
525 68 0.13
527 43 0.08
528 1 0.00
529 126 0.24
530 87 0.17
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (521 bp):
TACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTA
GTATTGATATCTTTATGACAAATGCCTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTA
AAAATCATATATATCAATTCCACACACATTATAAACATATAATCTAAAAAACATACATTAATTTA
AACATTTGAGGTGGAATCATTCTAAGTCTCCCTCAACCCATATAATTACAATATATGCACACCTA
ATATACTGTAGTGACGTCCAACTATCGACAACTTTGTCCTTGCCCTTTTTTACCTGACTAAGGAG
CTTGGTTATAATATACACAAGCACCCATTTAGTACACATACCATACAAATGTATATTATCTAACA
TTTATACTTTAGTAATACTAAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCT
TATAATTCCTGGCTCAATAGTATCGGTACCCAAACTATGATATCGATACTTCTACTACGATACCA
A
Found at i:10269787 original size:95 final size:93
Alignment explanation
Indices: 10269606--10269862 Score: 336
Period size: 95 Copynumber: 2.7 Consensus size: 93
10269596 TACGATACCA
* * * * *
10269606 ATACTCCCTTTCAGTATCGATACCATTTCGGTATCTAGAATCCAT-ATTTCGATACCTTTCTTCT
1 ATACTCCCTTTCAGTATCGATACCATTTCGGCATCTGGAATCCATGGTATCGATACCTTTCTCCT
* *
10269670 AATATCGATACTTCTATACTATGGTATC
66 AGTACCGATACTTCTATACTATGGTATC
* *
10269698 GATACTCCCTTACAGTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTC
1 -ATACTCCCTTTCAGTATCGATACCATTTCGGCA-TCTGGAATCCATGGTATCGATACCTTTCTC
*
10269763 CTAGTACCGATACTTCTATTCTATGGTATC
64 CTAGTACCGATACTTCTATACTATGGTATC
** * * * *
10269793 AGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAGGTATCGATACCTTTCTCT
1 A-TACTCCCTTTCAGTATCGATACCATTTCGGCATCTGGAATCCATGGTATCGATACCTTTCTCC
10269858 TAGTA
65 TAGTA
10269863 TTGATATCTT
Statistics
Matches: 143, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
93 30 0.21
94 44 0.31
95 69 0.48
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (93 bp):
ATACTCCCTTTCAGTATCGATACCATTTCGGCATCTGGAATCCATGGTATCGATACCTTTCTCCT
AGTACCGATACTTCTATACTATGGTATC
Found at i:10270869 original size:606 final size:610
Alignment explanation
Indices: 10269823--10271011 Score: 2058
Period size: 606 Copynumber: 2.0 Consensus size: 610
10269813 ATACCATTTC
*
10269823 TCCATATGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGACAAATGCACA
1 TCCAAATGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGACAAATGCACA
* *
10269888 GTTAGGCATTTATCTTTCATTTTAAAACAGTTTTTAACTAAAAATTATTCATAATATCAATTCCA
66 GTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAACTAAAAATTATTCATAATATCAATTCAA
*
10269953 CACACATTATAAACATATATCATATAAGGTAAACATACATTAATTTAAACATTTGAGGTGGAATC
131 CACACATTATAAACATAAATCATATAAGGTAAACATACATTAATTTAAACATTTGAGGTGGAATC
** *
10270018 ATTCTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTCACTTAATATACTGTAGTGACG
196 ATTCTAAAACTCCCTCAACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACG
10270083 TCCAACTACTCGACACTTTGTCCTTGCCCTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTA
261 TCCAACTACTCGACACTTTGTCCTTGCCCTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTA
10270148 CACAAGCACCCATTAGTACGCATACCATACAAATGTTAGTATATATCTAAATTTATACTTTAGTA
326 CACAAGCACCCATTAGTACGCATACCATACAAATGTTAG-ATATATCTAAATTTATACTTTAGTA
*
10270213 ATACTCAAAAGTACTAATATTTTAATTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCA
390 ATACTCAAAACTACTAATATTTTAATTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCA
*
10270278 ATAGTATCGGTACCCATACTATGATATTGATACTTCTATACTACGATACCAATACTCCCTTTCAG
455 ATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCAATACTCCCTTTCAG
*
10270343 TATCGATACCATTTCAGTATTCTAGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTT
520 TATCGATACCATTTCAGTATTCTAGAATCCATAGTATCGATACCTTTCTTCTAGTATAGATACTT
10270408 CTACTATGGTCGATACTCCCTTTCAG
585 CTACTATGGTCGATACTCCCTTTCAG
* *
10270434 TCCAAATGGATTCCAAGGTATCGATTCCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACA
1 TCCAAATGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGACAAATGCACA
*
10270499 GTTAGGCA-TTATCTTTCTTTTTAAAACAGTTCTTAACT-AAAATTATTCATAATATCAATTCAA
66 GTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAACTAAAAATTATTCATAATATCAATTCAA
10270562 CACACATTATAAACATAAATCATATAAGGTAAAACATACATTAATTT-AACATTTGAGGT-GAAT
131 CACACATTATAAACATAAATCATATAAGGT-AAACATACATTAATTTAAACATTTGAGGTGGAAT
* *
10270625 TATTGTAAAACTCCC-CAACCCATATAATT-CAATATATGCACTCACCTAATATACTGTAGTGAC
195 CATTCTAAAACTCCCTCAACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGAC
10270688 GTCCAACTACTCGACAACTTTGTCCTTGCCCTTTT-TCTACCTGACTAAGGAGCTTGGTTATAAT
260 GTCCAACTACTCGAC-ACTTTGTCCTTGCCCTTTTCT-TACCTGACTAAGGAGCTTGGTTATAAT
*
10270752 CTACTCAAGCACCCATTTAGTACGCATACCATACAAATGTTAG-TATATCTAACATTTATAC-TT
323 CTACACAAGCACCCA-TTAGTACGCATACCATACAAATGTTAGATATATCTAA-ATTTATACTTT
10270815 AGTAATACTC-AAACTACTAATACTTTTAATTTCTAT-ACAACTTCAACCTATCTTATAATTCCT
386 AGTAATACTCAAAACTACTAATA-TTTTAA-TTCTATAACAACTTCAACCTATCTTATAATTCCT
*
10270878 GGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCC
449 GGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCAATACTCCC
* *
10270943 TTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATAG
514 TTTCAGTATCGATACCATTTCAGTATTCTAGAATCCATAGTATCGATACCTTTCTTCTAGTATAG
10271008 ATAC
579 ATAC
10271012 CTTTCTTCTA
Statistics
Matches: 552, Mismatches: 19, Indels: 19
0.94 0.03 0.03
Matches are distributed among these distances:
605 11 0.02
606 232 0.42
607 88 0.16
608 42 0.08
609 65 0.12
610 44 0.08
611 70 0.13
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (610 bp):
TCCAAATGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGACAAATGCACA
GTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAACTAAAAATTATTCATAATATCAATTCAA
CACACATTATAAACATAAATCATATAAGGTAAACATACATTAATTTAAACATTTGAGGTGGAATC
ATTCTAAAACTCCCTCAACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACG
TCCAACTACTCGACACTTTGTCCTTGCCCTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTA
CACAAGCACCCATTAGTACGCATACCATACAAATGTTAGATATATCTAAATTTATACTTTAGTAA
TACTCAAAACTACTAATATTTTAATTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAA
TAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCAATACTCCCTTTCAGT
ATCGATACCATTTCAGTATTCTAGAATCCATAGTATCGATACCTTTCTTCTAGTATAGATACTTC
TACTATGGTCGATACTCCCTTTCAG
Found at i:10271005 original size:20 final size:20
Alignment explanation
Indices: 10270980--10271031 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
10270970 CTGGAATCCA
*
10270980 TAGTATCGATACCTTTCTTC
1 TAGTATAGATACCTTTCTTC
10271000 TAGTATAGATACCTTTCTTC
1 TAGTATAGATACCTTTCTTC
*
10271020 TAGTATTGATAC
1 TAGTATAGATAC
10271032 TTCTATACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (20 bp):
TAGTATAGATACCTTTCTTC
Found at i:10271053 original size:115 final size:115
Alignment explanation
Indices: 10270912--10271119 Score: 344
Period size: 115 Copynumber: 1.8 Consensus size: 115
10270902 CTATGATATC
* *
10270912 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAAT
1 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* *
10270977 CCATAGTATCGATACCTTTCTTCTAGTATAGATACCTTTCTTCTAGTATT
66 CCATAGTATCGATACCATTCTCCTAGTATAGATACCTTTCTTCTAGTATT
* * *
10271027 GATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
1 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
*
10271092 CCATGGTATCGATACCATTCTCCTAGTA
66 CCATAGTATCGATACCATTCTCCTAGTA
10271120 CCGATACTTC
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
115 85 1.00
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (115 bp):
GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
CCATAGTATCGATACCATTCTCCTAGTATAGATACCTTTCTTCTAGTATT
Found at i:10271118 original size:95 final size:92
Alignment explanation
Indices: 10271002--10271217 Score: 290
Period size: 95 Copynumber: 2.3 Consensus size: 92
10270992 CTTTCTTCTA
* *
10271002 GTATAGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTCCTAGTATTGATACTTCTATACTATGGTATCAG-TACTCCCTTTCAGTA
* *
10271066 TCGATACCATTTAGGCATTCTGGAATCCATG
65 -CGATACCATTT-CGCA-TCTGGAATCCAAG
* ** *
10271097 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAC
1 GTATCGATACCTTTCTCCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTAC
* *
10271162 GATACCATTTCTCATCTGGATTCCAAG
66 GATACCATTTCGCATCTGGAATCCAAG
*
10271189 GTATCGATACCTTTCTCTTAGTATTGATA
1 GTATCGATACCTTTCTCCTAGTATTGATA
10271218 TCATTATGCC
Statistics
Matches: 106, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
92 36 0.34
93 2 0.02
94 11 0.10
95 56 0.53
96 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (92 bp):
GTATCGATACCTTTCTCCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTAC
GATACCATTTCGCATCTGGAATCCAAG
Found at i:10271787 original size:74 final size:73
Alignment explanation
Indices: 10271647--10271802 Score: 206
Period size: 74 Copynumber: 2.1 Consensus size: 73
10271637 CATACTATGA
* * *
10271647 TATCGATACTTCAATACTACGATACCGATACTCCATTCAGTATCGATACCATTTCGGTATTATGG
1 TATCGATACTTCAATACTACGATACCGATACTCCATTCAGTATCGATACAATTTAGGCATTATGG
10271712 AATCCATAG
66 AATCCAT-G
* * * * * *
10271721 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCG-TACAATTTAGGCATTCTG
1 TATCGATACTTCAATACTACGATACCGATACT-CCATTCAGTATCGATACAATTTAGGCATTATG
10271785 GAATCCATG
65 GAATCCATG
10271794 TATCGATAC
1 TATCGATAC
10271803 CTTTCTCCTA
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
73 10 0.14
74 50 0.69
75 12 0.17
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (73 bp):
TATCGATACTTCAATACTACGATACCGATACTCCATTCAGTATCGATACAATTTAGGCATTATGG
AATCCATG
Found at i:10271834 original size:93 final size:94
Alignment explanation
Indices: 10271718--10271915 Score: 249
Period size: 93 Copynumber: 2.1 Consensus size: 94
10271708 ATGGAATCCA
* * * *
10271718 TAGTATCGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTATCG-TACAATTTAGGCAT
1 TAGTACCGATACATCTATACTATGGTATCAG-TACTCCCTTTCAGTATAGATACAATTTAGCCA-
*
10271781 TCTGGAATCC-ATGTATCGATACCTTTCTCC
64 TCTGGAATCCAAGGTATCGATACCTTTCTCC
* * **
10271811 TAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATAGATACTATTTCTCCATC
1 TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTATAGATACAATTTAGCCATC
* *
10271876 TGGATTCCAAGGTATCGATACCTTTCTCT
66 TGGAATCCAAGGTATCGATACCTTTCTCC
*
10271905 TAGTACTGATA
1 TAGTACCGATA
10271916 TCTTTATGTT
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
93 52 0.58
94 38 0.42
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (94 bp):
TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTATAGATACAATTTAGCCATC
TGGAATCCAAGGTATCGATACCTTTCTCC
Found at i:10272497 original size:95 final size:95
Alignment explanation
Indices: 10272358--10272650 Score: 346
Period size: 95 Copynumber: 3.1 Consensus size: 95
10272348 CATACTATGA
* * * *
10272358 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTTGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTTGGCATTCTG
10272423 GAATCCATAGTATCGATACCTTTCTTCTAG
66 GAATCCATAGTATCGATACCTTTCTTCTAG
* * * *
10272453 TATCGTTACTTCAATACTATGGTATCGATACTCACTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTTGGCATTCTG
* *
10272518 GAATACAT-GTTTATCGATACCTTTCTCCTAG
66 GAATCCATAG--TATCGATACCTTTCTTCTAG
* * * *
10272549 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACAATTTCT-CCA-TC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTT-TGGCATTC
*
10272611 TGGATTCCA-AGGTATCGATACCTTTC-TCTTAG
64 TGGAATCCATA-GTATCGATACCTTTCTTC-TAG
*
10272643 TATTGATA
1 TATCGATA
10272651 TCTTTATGCC
Statistics
Matches: 168, Mismatches: 23, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
93 1 0.01
94 24 0.14
95 74 0.44
96 69 0.41
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.39
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTTGGCATTCTG
GAATCCATAGTATCGATACCTTTCTTCTAG
Found at i:10273191 original size:19 final size:19
Alignment explanation
Indices: 10273144--10273192 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
10273134 TTGGAATCCA
10273144 TAGTATCGATACCTTTCTC
1 TAGTATCGATACCTTTCTC
10273163 T-GTATCGATACC-TTCTTC
1 TAGTATCGATACCTTTC-TC
*
10273181 TAGTATTGATAC
1 TAGTATCGATAC
10273193 TACTATACTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 3 0.11
18 14 0.52
19 10 0.37
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.43
Consensus pattern (19 bp):
TAGTATCGATACCTTTCTC
Found at i:10273251 original size:112 final size:112
Alignment explanation
Indices: 10273077--10273291 Score: 308
Period size: 112 Copynumber: 1.9 Consensus size: 112
10273067 CTATGATATC
* * * *
10273077 GATACTTCTATACTACGATACCGATACTCCTTTCAGTATCGATACCATTTCGGTATTTTGGAATC
1 GATACTACTATACTACGATACCGATACTCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATC
* *
10273142 CATAGTATCGATACCTTTCT-CT-GTATCGATACCTTCTTCTAGTATT
66 CATAGTATCGATACCATTCTCCTAGTACCGATA-CTTCTTCTAGTATT
* * *
10273188 GATACTACTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
1 GATACTACTATACTACGATACCGATACT-CCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
*
10273253 CCATGGTATCGATACCATTCTCCTAGTACCGATACTTCT
65 CCATAGTATCGATACCATTCTCCTAGTACCGATACTTCT
10273292 ATTCTATGGT
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
111 24 0.26
112 52 0.57
113 7 0.08
114 8 0.09
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.37
Consensus pattern (112 bp):
GATACTACTATACTACGATACCGATACTCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATC
CATAGTATCGATACCATTCTCCTAGTACCGATACTTCTTCTAGTATT
Found at i:10273280 original size:95 final size:92
Alignment explanation
Indices: 10273164--10273379 Score: 281
Period size: 95 Copynumber: 2.3 Consensus size: 92
10273154 ACCTTTCTCT
*
10273164 GTATCGATACCTTCTTCTAGTATTGATACTACTATACTATGGTATC-GATACTCCCTTTCAGTAT
1 GTATCGATACCTTCTCCTAGTATTGATACTACTATACTATGGTATCAG-TACTCCCTTTCAGTAT
* *
10273228 CGATACCATTTAGGCATTCTGGAATCCATG
65 CGATACCATTTAGCCA-TCTGGAATCCA-A
** * *
10273258 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACC-TTCTCCTAGTATTGATACTACTATACTATGGTATCAGTACTCCCTTTCAGTAT
** *
10273323 CGATACCATTTCTCCATCTGGATTCCAA
65 CGATACCATTTAGCCATCTGGAATCCAA
*
10273351 GTATCGATACCTTTCTCTTAGTATTGATA
1 GTATCGATACC-TTCTCCTAGTATTGATA
10273380 TCTTTATGCC
Statistics
Matches: 106, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
93 25 0.24
94 21 0.20
95 59 0.56
96 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (92 bp):
GTATCGATACCTTCTCCTAGTATTGATACTACTATACTATGGTATCAGTACTCCCTTTCAGTATC
GATACCATTTAGCCATCTGGAATCCAA
Found at i:10273918 original size:20 final size:20
Alignment explanation
Indices: 10273893--10273964 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 20
10273883 CTGGAATCCA
10273893 TAGTATCGATACCTTTCT-TC
1 TAGTATCGATACC-TTCTATC
10273913 TAGTATCGATA-CTTCTATC
1 TAGTATCGATACCTTCTATC
* *
10273932 TATGGTATCGATA-CTCCTTTC
1 TA--GTATCGATACCTTCTATC
10273953 -AGTATCGATACC
1 TAGTATCGATACC
10273965 ATTTAGGCAT
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
18 13 0.28
19 6 0.13
20 12 0.26
21 15 0.33
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (20 bp):
TAGTATCGATACCTTCTATC
Found at i:10273941 original size:21 final size:18
Alignment explanation
Indices: 10273893--10273963 Score: 72
Period size: 18 Copynumber: 3.7 Consensus size: 18
10273883 CTGGAATCCA
10273893 TAGTATCGATACCTTTCTTC
1 TAGTATCGATA-C-TTCTTC
10273913 TAGTATCGATACTTCTATC
1 TAGTATCGATACTTCT-TC
*
10273932 TATGGTATCGATACTCCTT-
1 TA--GTATCGATACTTCTTC
10273951 TCAGTATCGATAC
1 T-AGTATCGATAC
10273964 CATTTAGGCA
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
18 14 0.30
19 6 0.13
20 13 0.28
21 13 0.28
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.41
Consensus pattern (18 bp):
TAGTATCGATACTTCTTC
Found at i:10273977 original size:93 final size:91
Alignment explanation
Indices: 10273821--10274061 Score: 322
Period size: 93 Copynumber: 2.6 Consensus size: 91
10273811 CATACTATGA
* * * * *
10273821 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTAT-CTATGGTATCGATACT-CCTTTCAGTATCGATACCATTTAGGCATTCT-
*
10273886 GAATCCATAGTATCGATACCTTTCTTCTAG
63 GAATCC-TAGTATCGATACCTTTCTCCTAG
10273916 TATCGATACTTCTATCTATGGTATCGATACTCCTTTCAGTATCGATACCATTTAGGCATTCTGAA
1 TATCGATACTTCTATCTATGGTATCGATACTCCTTTCAGTATCGATACCATTTAGGCATTCTGAA
*
10273981 TCCTGGTATCGATACCTTTCTCCTAG
66 TCCTAGTATCGATACCTTTCTCCTAG
* * *
10274007 TACCCATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGTATGGATACCATTT
1 TATCGATACTTCTA-TCTATGGTATCGA-TACTCC-TTTCAGTATCGATACCATTT
10274062 CTCCATCTGA
Statistics
Matches: 133, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
91 34 0.26
92 23 0.17
93 48 0.36
94 13 0.10
95 15 0.11
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.38
Consensus pattern (91 bp):
TATCGATACTTCTATCTATGGTATCGATACTCCTTTCAGTATCGATACCATTTAGGCATTCTGAA
TCCTAGTATCGATACCTTTCTCCTAG
Found at i:10274178 original size:122 final size:124
Alignment explanation
Indices: 10273954--10274212 Score: 393
Period size: 122 Copynumber: 2.1 Consensus size: 124
10273944 ACTCCTTTCA
10273954 GTATCGATACCATTTAGGCATTCTGAATCCTGGTATCGATACCTTTCTCCTAGTACCCATACTTC
1 GTATCGATACCATTTAGGCATTCTGAATCCTGGTATCGATACCTTTCTCC-A-TACCCATACTTC
* * *
10274019 TATTCTATGGTATCAGTACTCCGTTTCAGTATGGATACCATTTCTCCATCT-GATTCCAAG
64 TATTCTATGGTATCAGTACTCCCTTACAGTATCGATACCATTTCTCCATCTGGATTCCAAG
* *
10274079 GTATCAATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCC-TACCGATAC-T-
1 GTATCGATACCATTTAGGCATTCT-GAATCC-TGGTATCGATACCTTTCTCCATACCCATACTTC
10274141 TATTCTATGGTAT-ATGTACTCCCTTACAGTATCGATACCATTTCTCCATCTGGATTCCAAG
64 TATTCTATGGTATCA-GTACTCCCTTACAGTATCGATACCATTTCTCCATCTGGATTCCAAG
10274202 GTATCGATACC
1 GTATCGATACC
10274213 TTTCTCTTAG
Statistics
Matches: 124, Mismatches: 6, Indels: 10
0.89 0.04 0.07
Matches are distributed among these distances:
121 1 0.01
122 46 0.37
123 20 0.16
124 8 0.06
125 23 0.19
126 6 0.05
127 20 0.16
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.36
Consensus pattern (124 bp):
GTATCGATACCATTTAGGCATTCTGAATCCTGGTATCGATACCTTTCTCCATACCCATACTTCTA
TTCTATGGTATCAGTACTCCCTTACAGTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:10274811 original size:95 final size:96
Alignment explanation
Indices: 10274672--10274917 Score: 349
Period size: 95 Copynumber: 2.6 Consensus size: 96
10274662 CATACTATGA
*
10274672 TATCGATACTTCTATACTA-GG-ATACTGATACTCCCTTTCAGTATCGATACCATTTCA-GTATT
1 TATCGATACTTCTATACTATGGTAT-C-GATACTCCCTTTCAGTATCGATACCATTTCAGGCATT
* * *
10274734 CTGGAATCCATAGTATTGATACCTTTCTTCTAG
64 CTGAAATCCATAGTATCGATACCTTTCTCCTAG
10274767 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTT-AGGCATTCT
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCAGGCATTCT
*
10274831 GAAATCCATGGTATCGATACCTTTCTCCTAG
66 GAAATCCATAGTATCGATACCTTTCTCCTAG
* * * *
10274862 TACCCATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
10274918 TCCATCTGGA
Statistics
Matches: 137, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
94 2 0.01
95 130 0.95
96 3 0.02
97 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (96 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCAGGCATTCT
GAAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:10274944 original size:33 final size:34
Alignment explanation
Indices: 10274902--10274986 Score: 111
Period size: 34 Copynumber: 2.6 Consensus size: 34
10274892 CTCCGTTTCA
*
10274902 GTATCGATACCATTTCTCCA-TCTGGATTCCAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** *
10274935 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
10274969 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
10274987 TAGTACCGAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 21 0.49
34 22 0.51
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:10274966 original size:128 final size:128
Alignment explanation
Indices: 10274807--10275073 Score: 498
Period size: 128 Copynumber: 2.1 Consensus size: 128
10274797 CTCCCTTTCA
10274807 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
* *
10274872 TCTATTCTATGGTATCAGTACTCCGTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAG
* *
10274935 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
10275000 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAG
10275063 GTATCGATACC
1 GTATCGATACC
10275074 TTTCTCATAG
Statistics
Matches: 135, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
128 135 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAG
Found at i:10275668 original size:95 final size:95
Alignment explanation
Indices: 10275529--10275774 Score: 361
Period size: 95 Copynumber: 2.6 Consensus size: 95
10275519 CATACTATGA
* * * * *
10275529 TATCGATACTTCTATACTACGATACCAATACTCCCTTTCAGTATCGATACCATTTCA-GTATTCT
1 TATCGATACTTCTATACTATGGTATC-ATACTCCCTTTCAGTATCGATACCATTTCAGGCATTAT
* *
10275593 GGAATCCATAGTATCGATACCTTTCTTCTAG
65 GGAATCCATAGTATCAATACCTTTCTCCTAG
10275624 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTT-AGGCATTAT
1 TATCGATACTTCTATACTATGGTATC-ATACTCCCTTTCAGTATCGATACCATTTCAGGCATTAT
*
10275688 GGAATCCATGGTATCAATACCTTTCTCCTAG
65 GGAATCCATAGTATCAATACCTTTCTCCTAG
* *
10275719 TACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCA-TACTCCCTTTCAGTATCGATACCATTTC
10275775 TCCATCTGGA
Statistics
Matches: 137, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
94 2 0.01
95 135 0.99
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCATACTCCCTTTCAGTATCGATACCATTTCAGGCATTATG
GAATCCATAGTATCAATACCTTTCTCCTAG
Found at i:10276337 original size:734 final size:734
Alignment explanation
Indices: 10274935--10283306 Score: 11664
Period size: 753 Copynumber: 11.2 Consensus size: 734
10274925 GGATTCCAAG
10274935 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
10275000 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* * **
10275065 ATCGATACCTTTCTCATAGTATTGATATCTTTATGCCAAATGTACAGTTAGGCATTTATAATTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
10275130 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAA-TCC-CACACATTAT-AA-ATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
*
10275191 ATCATATAAGG-AAAACATACATTAATTTAAACATTTGAGGTGGAATTATTATAAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
*
10275255 ACCCATATAATTAAAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
*
10275320 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGATCTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
10275385 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
*
10275450 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTAGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* *
10275515 CACCCATACTATGATATCGATACTTCTATACTACGATACCAATACTCCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
*
10275580 ATTTCAGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
10275645 GTATCGATACTCCCTTTCA
716 GTATCGATACTCCCTTTCA
* *
10275664 GTATCGATACCATTTAGGCATTATGGAATCCATGGTATCAATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
10275729 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* * * *
10275794 ATCGATTCCTTTCTCTTAGTATTGATATCTTTATTCCAAATGCACAGTTAGGTATTTATATTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
10275859 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCAACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
10275924 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
*
10275989 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAAGTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
* *
10276054 TTTGTCCTTGCCCTTTTTCTTACTTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
10276119 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
10276184 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
*
10276249 TACCCATACTATGATATCGATAGTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
*
10276314 ATTTCGGTATTTTGGAATCCATAGTATCGATACCTTTCTTCTGTATCGATACCTTTCTTCTAGTA
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTC--TA--G-TA-------TC-----
*
10276379 TTGATACTACTATACTATGGTATCGATACTCCCTTTCA
699 --GATACTTCTATACTATGGTATCGATACTCCCTTTCA
*
10276417 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
10276482 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
10276547 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
10276612 TTTTAAAATAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
*
10276677 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGATGTGGAATTATTGTAAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
*
10276742 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGGCGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
* * *
10276807 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATACATAAACACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
*
10276872 AGTACACATATCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
* * *
10276937 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTAATAATTCCTGGATCAATATTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* *
10277002 TACCCATACTATGATAACGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCAATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
10277067 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATAACTTTCTTCTAGT
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTC---TA--G-T-A------TC----
10277132 ATTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
699 ---GATACTTCTATACTATGGTATCGATACTCCCTTTCA
*
10277171 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
10277236 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* * *
10277301 ATCGATACCTTTCACTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
10277366 TTTTAAAACAGTTCTTAAACT-AAAATTATTCATAATATCAATTCCACACATATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* *
10277430 ATCATATTAA-GTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTC
261 ATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTC
* ** * * * *
10277494 AACCCATATAATTACAACATATAG-ACTCACCTGGTATGCTTTAGTGACGTCTAACTACTCAACA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACA
* * * * * *
10277558 ACTTTGCCCTTGCCTTTTTTCTTGCCTGACT-CGATAGCTTGGTTATAATCTACATAAGCACCCA
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAG-GAGCTTGGTTATAATCTACACAAGCACCCA
* * *
10277622 TTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCAATACTCAAA
453 TTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAA
* *
10277687 AGTACTAATACTTTTAATTTCTATAACAAGTTCAACCTATCTTATAATTCCTGGCTCAGTAGTAT
518 AGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTAT
10277752 CGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGAT
583 CGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGAT
* *
10277817 ACCATTTCGGTATTCCGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCAATACT
648 ACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACT
10277882 ATGGTATCGATACTCCCTTTCA
713 ATGGTATCGATACTCCCTTTCA
*
10277904 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTATCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* *
10277969 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGAAACCATTTCTCCATATGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
*
10278034 ATCGATACCTTTCTCTTAGTATTGACATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
10278099 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
*
10278164 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCTCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
* *
10278229 ACCCATATAATTACAACATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGGCAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
*
10278294 TTTGTCCTTTCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
10278359 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
10278424 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* * *
10278489 TACCCATCCTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTTATTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
*
10278554 ATTTCGGTATTCTGGAATCCATAGTATCGAAACCTTTCTTCTAGTATCGATACCTTTCTTCTAGT
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATA-----CTTC----
10278619 ATTGATACTTCTATAATATGGTATCGATACTCCCTTTCA
707 --T-ATA---C-----TATGGTATCGATACTCCCTTTCA
*
10278658 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* * * *
10278723 TCTCTTCTATGGTATGAGTACTCCCTATCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* *
10278788 ATTGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTACGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
10278853 TTTTAAAACAGTTCTTAAATTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
*
10278918 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCTCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
* *
10278983 ACCCATATAATTACAACATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGGCAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
* *
10279048 TTTGTCCTTTCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCAATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
10279113 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
*
10279178 ACTAATACTTTTAGTTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTA----
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* * *
10279239 TACCCATCCTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTTATTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
10279304 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTAGT
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATA-----CTTC----
10279369 ATTGATACTTCTATAATATGGTATCGATACTCCCTTTCA
707 --T-ATA---C-----TATGGTATCGATACTCCCTTTCA
*
10279408 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* * * *
10279473 TCTCTTCTATGGTATGAGTACTCCCTATCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* *
10279538 ATTGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTACGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
10279603 TTTTAAAACAGTTCTTAAATTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* *
10279668 GTCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTATGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
*
10279733 ACCCATATAATTACAATATATGCACTCACCTAATATACTATAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
* * *
10279798 TTTGTCATCGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
*
10279863 AGTACACATGCCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
*
10279928 AGTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* *
10279993 TACCCATACTATGATATCGATACCTCTATACTACGATATCGATACTCCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
*
10280058 ATTTCGGTATTATGGAAT-C-------C---A---------TAGTATCGATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
10280103 GTATCGATACTCCCTTTCA
716 GTATCGATACTCCCTTTCA
* * * *
10280122 GTATCAATACAATTTAGGCATTCTGGAATCCATGGTATCAATACCTTTCTCCTAGTACCGATACA
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
10280187 TCTATTATATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* * ** *
10280252 ATCGATACCTTTCTTTTAGTACTGATATCTTTATGTTAAATGCATAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
10280317 TTTTAAAACAGTTCTTAAACT-AAAATTATTCATAATATCAATTCCACACATATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * * *
10280381 ATGATATTAA-GTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTTTGAGTCTCCCTC
261 ATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTC
* * * * * * *
10280445 AACCCATATAATTACAACATATAG-ACTCACCTGATATGCTTTAGTGACATCTAACTACTCAACA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACA
* * * * *
10280509 ACTTTGTCCTTGCCTTTTTTCTTGCCTGACT-CGATAGCTTGGTTATAATCTACATAAGCACCCA
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAG-GAGCTTGGTTATAATCTACACAAGCACCCA
* *
10280573 TTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAA
453 TTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAA
10280638 AGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTAT
518 AGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTAT
10280703 CGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGAT
583 CGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGAT
* *
10280768 ACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGTTACTTCAATACT
648 ACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACT
*
10280833 ATGGTATCGATACTCACTTTCA
713 ATGGTATCGATACTCCCTTTCA
10280855 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
10280920 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
*
10280985 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTGGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
* *
10281050 TTTTAAAACAGTTCTTAAACTAAAAGTTATTCATAATATCAATTCCACACACATTATAAACCTAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
10281115 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAG--T--CT--
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
* *
10281174 --CCATATAATTACAATATATGCACTCAACTAATATACTGTAGTGACGTCCAACTACTCGGCAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
*
10281237 TTTGTCCTTTCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
*
10281302 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATAATCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
* *
10281367 ACTAATACTTTTAGTTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATTGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* *
10281432 TACCCATACTATGATATCGATACTTCTATACTAGGATACTGATACTCCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
*
10281497 ATTTCGGTATTATGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
*
10281562 GTAACGATACTCCCTTTCA
716 GTATCGATACTCCCTTTCA
* *
10281581 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* *
10281646 TCTATTCTATGGTATCAGTACTCCGTTTCAGTATGGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* * * * * *
10281711 ATCAATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCT-CCTAGTACCGATACTT
131 ATCGATACC-TTT---C--TCT----T--A--GTATTGATATCTTTATGCC-A--A---ATGC-A
* * * * * * ** * ** *
10281775 CTATTCTATGGTATATGTACTCCCTTTCAGTATTGATACCATTTCTCCATCT--GGA-T-TCCA-
175 C-AGT-TA-GGCAT-T-TA-T--CTTTCA-T-TTTAAAACAGTTCTTAAACTAAAAATTATTCAT
* * * ** * * * * * **
10281835 AGGTATCGATACCTTTCTCTTAGTATTGAT-ATC-TTTATGCCAAATGCACA-GTTAGGCATTTA
230 A-ATATC-A-A--TTCCACACA-CATT-ATAAACATATAT--CATAT--A-AGGTAAAACA--TA
* * * * ** * * ** *
10281897 TCTTTCATTTTAAAACAGTTCTTAAAGTAAAAATTATTCATAA-TATCAATTCCACACACATTAT
281 -CATT-AATTT-AAACA--T-TTGAGGT-GGAATTATT-GTAAGTCTC-CCT-CA-ACCCA-TAT
** * * * * *
10281961 AAACATATATC-ATATAAGGTAAAACAT-ACATTAATTTAAACATTTGACGTGGAC-T-TATAGT
334 --A-AT-TA-CAATAT-A--T-GCAC-TCAC-CTAA--TATAC-TGT-A-GT-GACGTCCA-ACT
** ** * ** * * * ***
10282022 GAGTCTCCCTCAACCCATATAATTACAACATATAGATTCACCTGATATTCTATAGTGA-C---G-
381 -A--CT-CGACAA-CTTTGTCCTTGC--CCTTTTTCTT-ACCTG--A--CTA-AG-GAGCTTGGT
* * * ** ** * * * * ** *
10282082 TCTAA-CTACTCAA-CAACTTTTTCCTTGC-CTTTTTTCTTGCCTGACGCGATAGCTTGGT-TAT
432 TATAATCTACACAAGCACCCATTT-AGTACAC---ATAC---CAT-AC-AAAT-G-TTAGTATAT
* * * *
10282143 AATCT-ACA-TAAGCACCCATTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTT
486 TATCTAACATTTA-TA--C-TTTAG-T--AATA-C-T-CAAA----AG-----TA-CT---A---
* *
10282206 ATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTAT
525 ATACTTT--TAAT-TTC-----TA-T-A-AC----AA-C-----------TTCAACCTATCTTAT
10282271 AATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGA
563 AATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGA
10282336 TACTCCCTTTCAGTATCGATACCATTTCGGTATTCT-GAATCCATAGTATCGATACCTTTCTTCT
628 TACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCT
* * *
10282400 AGTATCGTTACTTCAATACTATGGTATCGATACTCACTTTCA
693 AGTATCGATACTTCTATACTATGGTATCGATACTCCCTTTCA
10282442 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
10282507 TCTATTCTATGGTATCAGTACTCCCTCTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
*
10282572 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTGGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
* *
10282637 TTTTAAAACAGTTCTTAAACTAAAAGTTATTCATAATATCAATTCCACACACATTATAAACCTAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
10282702 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAG--T--CT--
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
* *
10282761 --CCATATAATTACAATATATGCACTCAACTAATATACTGTAGTGACGTCCAACTACTCGGCAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
*
10282824 TTTGTCCTTTCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
* *
10282889 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATAATTTAGTAATAATCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
*
10282954 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATTGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* *
10283019 TACCCATACTATGATATCGATACTTCTATACTAGGATACTGATACTCCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
* *
10283084 ATTTCGGTATTATGGAATCCATAGTATCGATACCTTTCTTCTAGTATAGATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
10283149 GTATCGATACTCCCTTTCA
716 GTATCGATACTCCCTTTCA
* *
10283168 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* *
10283233 TCTATTCTATGGTATCAGTACTCCGTTTCAGTATGGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
*
10283298 ATCAATACC
131 ATCGATACC
10283307 ATTTAGGCAT
Statistics
Matches: 6921, Mismatches: 451, Indels: 545
0.87 0.06 0.07
Matches are distributed among these distances:
712 1 0.00
713 414 0.06
714 226 0.03
719 1 0.00
721 1 0.00
722 3 0.00
723 1 0.00
724 1 0.00
725 113 0.02
726 709 0.10
727 4 0.00
729 232 0.03
730 5 0.00
731 10 0.00
732 6 0.00
733 510 0.07
734 956 0.14
735 1 0.00
736 3 0.00
737 2 0.00
738 2 0.00
739 8 0.00
740 16 0.00
741 2 0.00
742 2 0.00
743 2 0.00
744 2 0.00
745 3 0.00
746 8 0.00
747 3 0.00
748 2 0.00
749 7 0.00
750 742 0.11
751 3 0.00
752 16 0.00
753 1139 0.16
754 948 0.14
755 3 0.00
756 22 0.00
757 5 0.00
758 8 0.00
759 2 0.00
760 6 0.00
761 1 0.00
762 2 0.00
763 3 0.00
764 6 0.00
765 5 0.00
767 1 0.00
768 9 0.00
769 8 0.00
770 3 0.00
771 4 0.00
773 1 0.00
774 6 0.00
775 4 0.00
776 8 0.00
777 6 0.00
778 6 0.00
779 5 0.00
780 5 0.00
781 3 0.00
782 4 0.00
783 5 0.00
784 16 0.00
785 18 0.00
786 2 0.00
787 6 0.00
788 5 0.00
789 5 0.00
790 4 0.00
791 4 0.00
792 9 0.00
793 4 0.00
794 4 0.00
795 9 0.00
796 4 0.00
797 4 0.00
798 5 0.00
799 5 0.00
800 6 0.00
801 2 0.00
802 18 0.00
803 16 0.00
804 5 0.00
805 4 0.00
806 3 0.00
807 5 0.00
808 5 0.00
809 6 0.00
810 6 0.00
811 8 0.00
812 5 0.00
813 6 0.00
814 1 0.00
816 4 0.00
817 3 0.00
818 8 0.00
819 9 0.00
820 1 0.00
822 5 0.00
823 6 0.00
824 3 0.00
825 2 0.00
826 1 0.00
827 6 0.00
828 2 0.00
829 8 0.00
830 5 0.00
831 22 0.00
832 2 0.00
833 7 0.00
834 2 0.00
835 15 0.00
836 3 0.00
837 4 0.00
838 6 0.00
839 1 0.00
840 2 0.00
841 1 0.00
842 3 0.00
843 2 0.00
844 1 0.00
845 2 0.00
846 2 0.00
847 14 0.00
848 2 0.00
849 1 0.00
850 2 0.00
851 1 0.00
855 3 0.00
857 1 0.00
860 3 0.00
861 199 0.03
862 112 0.02
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.37
Consensus pattern (734 bp):
GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
GTATCGATACTCCCTTTCA
Found at i:10276384 original size:20 final size:20
Alignment explanation
Indices: 10276335--10276385 Score: 86
Period size: 19 Copynumber: 2.6 Consensus size: 20
10276325 TTGGAATCCA
10276335 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
10276355 T-GTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
10276374 TAGTATTGATAC
1 TAGTATCGATAC
10276386 TACTATACTA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 19 0.66
20 10 0.34
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.45
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:10276444 original size:114 final size:115
Alignment explanation
Indices: 10276274--10276480 Score: 317
Period size: 114 Copynumber: 1.8 Consensus size: 115
10276264 ATCGATAGTT
* * *
10276274 CTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTTTGGAATCCATAGT
1 CTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATAGT
* * *
10276339 ATCGATACCTTTCTTCT-GTATCGATACCTTTCTTCTAGTATTGATACTA
66 ATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATTGATACTA
* * * *
10276388 CTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGT
1 CTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATAGT
10276453 ATCGATACCATTCTCCTAGTACCGATAC
66 ATCGATACCATTCTCCTAGTACCGATAC
10276481 TTCTATTCTA
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
114 73 0.89
115 9 0.11
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.37
Consensus pattern (115 bp):
CTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATAGT
ATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATTGATACTA
Found at i:10276455 original size:95 final size:94
Alignment explanation
Indices: 10276356--10276573 Score: 296
Period size: 95 Copynumber: 2.3 Consensus size: 94
10276346 CCTTTCTTCT
10276356 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAG-TACTCCCTTTCAGTA
* *
10276420 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTTAGCCA-TCTGGAATCCAAG
* * ** * *
10276451 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAGTACTCCCTTTCAGTAT
** *
10276516 CGATACCATTTCTCCATCTGGATTCCAAG
66 CGATACCATTTAGCCATCTGGAATCCAAG
10276545 GTATCGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
10276574 TCTTTATGCC
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
93 1 0.01
94 34 0.32
95 70 0.66
96 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAGTACTCCCTTTCAGTAT
CGATACCATTTAGCCATCTGGAATCCAAG
Found at i:10277113 original size:20 final size:20
Alignment explanation
Indices: 10277088--10277139 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
10277078 CTGGAATCCA
10277088 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
10277108 TAGTATCGATAACTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
10277128 TAGTATTGATAC
1 TAGTATCGATAC
10277140 TTCTATACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:10277160 original size:115 final size:115
Alignment explanation
Indices: 10277020--10277233 Score: 338
Period size: 115 Copynumber: 1.9 Consensus size: 115
10277010 CTATGATAAC
* *
10277020 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCAATACCATTTCGGTATTCTGGAAT
1 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCAATACCATTTAGGCATTCTGGAAT
* * *
10277085 CCATAGTATCGATACCTTTCTTCTAGTATCGATAACTTTCTTCTAGTATT
66 CCATAGTATCGATACCATTCTCCTAGTACCGATAACTTTCTTCTAGTATT
* * * *
10277135 GATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
1 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCAATACCATTTAGGCATTCTGGAAT
*
10277200 CCATGGTATCGATACCATTCTCCTAGTACCGATA
66 CCATAGTATCGATACCATTCTCCTAGTACCGATA
10277234 CTTCTATTCT
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
115 89 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (115 bp):
GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCAATACCATTTAGGCATTCTGGAAT
CCATAGTATCGATACCATTCTCCTAGTACCGATAACTTTCTTCTAGTATT
Found at i:10277210 original size:95 final size:94
Alignment explanation
Indices: 10277110--10277327 Score: 285
Period size: 95 Copynumber: 2.3 Consensus size: 94
10277100 CTTTCTTCTA
* * **
10277110 GTATCGATAACTTTCTTCTAGTATTGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTCCTAGTACCGATACTTCTATACTATGGTATCAG-TACTCCCTTTCAGTA
* *
10277174 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTTAGCCA-TCTGGAATCCAAG
* *
10277205 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTCCTAGTACCGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTAT
** *
10277270 CGATACCATTTCTCCATCTGGATTCCAAG
66 CGATACCATTTAGCCATCTGGAATCCAAG
* * *
10277299 GTATCGATACCTTTCACTTAGTACTGATA
1 GTATCGATACCTTTCTCCTAGTACCGATA
10277328 TCTTTATGCC
Statistics
Matches: 107, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
94 36 0.34
95 70 0.65
96 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.38
Consensus pattern (94 bp):
GTATCGATACCTTTCTCCTAGTACCGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTAT
CGATACCATTTAGCCATCTGGAATCCAAG
Found at i:10277896 original size:95 final size:95
Alignment explanation
Indices: 10277769--10278055 Score: 384
Period size: 95 Copynumber: 3.0 Consensus size: 95
10277759 CATACTATGA
* * * *
10277769 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCCG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCCG
*
10277834 GAATCCATAGTATCGATACCTTTCTTCTAG
66 GAATCCATAGTATCGATACCTTTCTCCTAG
* * *
10277864 TATCGATACTTCAATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCCG
*
10277929 GAATCCATGGTATCGATACCTTTCTCCTAG
66 GAATCCATAGTATCGATACCTTTCTCCTAG
* * **
10277959 TATCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGAAACCATTTCTCCATAT-
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGCAT-TC
* *
10278022 -GGATTCCA-AGGTATCGATACCTTTCTCTTAG
64 CGGAATCCATA-GTATCGATACCTTTCTCCTAG
10278053 TAT
1 TAT
10278056 TGACATCTTT
Statistics
Matches: 171, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
94 31 0.18
95 139 0.81
96 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCCG
GAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:10278625 original size:20 final size:20
Alignment explanation
Indices: 10278575--10278626 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
10278565 CTGGAATCCA
*
10278575 TAGTATCGAAACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
10278595 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
10278615 TAGTATTGATAC
1 TAGTATCGATAC
10278627 TTCTATAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.12, T:0.42
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:10278682 original size:115 final size:115
Alignment explanation
Indices: 10278507--10278731 Score: 317
Period size: 115 Copynumber: 2.0 Consensus size: 115
10278497 CTATGATATC
* * * * *
10278507 GATACTTCTATACTACGATACCGATACTCCCTTTTATTATCGATACCATTTCGGTATTCTGGAAT
1 GATACTTCTATAATACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* * *
10278572 CCATAGTATCGAAACCTTTCTTCTAGTATCGATACCTT-TCTTCTAGTATT
66 CCATAGTATCGAAACCATTCTCCTAGTACCGATA-CTTCTCTTCTAGTATT
* * *
10278622 GATACTTCTATAATATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
1 GATACTTCTATAATACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* *
10278687 CCATGGTATCGATACCATTCTCCTAGTACCGATACTTCTCTTCTA
66 CCATAGTATCGAAACCATTCTCCTAGTACCGATACTTCTCTTCTA
10278732 TGGTATGAGT
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
114 3 0.03
115 93 0.97
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.38
Consensus pattern (115 bp):
GATACTTCTATAATACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
CCATAGTATCGAAACCATTCTCCTAGTACCGATACTTCTCTTCTAGTATT
Found at i:10278696 original size:95 final size:94
Alignment explanation
Indices: 10278597--10278814 Score: 269
Period size: 95 Copynumber: 2.3 Consensus size: 94
10278587 CTTTCTTCTA
*
10278597 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATAATATGGTATCGA-TACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATAATATGGTAT-GAGTACTCCCTATCAGTA
* * *
10278661 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTT-CGCAATCTGGAATCCAAG
* * ** * **
10278692 GTATCGATACCATTCTCCTAGTACCGATACTTCTCTTCTATGGTATGAGTACTCCCTATCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATAATATGGTATGAGTACTCCCTATCAGTAT
* *
10278757 CGATACCATTTCTCAATCTGGATTCCAAG
66 CGATACCATTTCGCAATCTGGAATCCAAG
*
10278786 GTATTGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
10278815 TCTTTATGCC
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
93 1 0.01
94 37 0.36
95 65 0.63
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTTCTATAATATGGTATGAGTACTCCCTATCAGTAT
CGATACCATTTCGCAATCTGGAATCCAAG
Found at i:10279350 original size:20 final size:20
Alignment explanation
Indices: 10279325--10279376 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
10279315 CTGGAATCCA
10279325 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
10279345 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
10279365 TAGTATTGATAC
1 TAGTATCGATAC
10279377 TTCTATAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:10279440 original size:115 final size:115
Alignment explanation
Indices: 10279257--10279481 Score: 326
Period size: 115 Copynumber: 2.0 Consensus size: 115
10279247 CTATGATATC
* * * * *
10279257 GATACTTCTATACTACGATACCGATACTCCCTTTTATTATCGATACCATTTCGGTATTCTGGAAT
1 GATACTTCTATAATACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* * *
10279322 CCATAGTATCGATACCTTTCTTCTAGTATCGATACCTT-TCTTCTAGTATT
66 CCATAGTATCGATACCATTCTCCTAGTACCGATA-CTTCTCTTCTAGTATT
* * *
10279372 GATACTTCTATAATATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
1 GATACTTCTATAATACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
*
10279437 CCATGGTATCGATACCATTCTCCTAGTACCGATACTTCTCTTCTA
66 CCATAGTATCGATACCATTCTCCTAGTACCGATACTTCTCTTCTA
10279482 TGGTATGAGT
Statistics
Matches: 97, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
114 3 0.03
115 94 0.97
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (115 bp):
GATACTTCTATAATACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
CCATAGTATCGATACCATTCTCCTAGTACCGATACTTCTCTTCTAGTATT
Found at i:10279446 original size:95 final size:94
Alignment explanation
Indices: 10279347--10279564 Score: 269
Period size: 95 Copynumber: 2.3 Consensus size: 94
10279337 CTTTCTTCTA
*
10279347 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATAATATGGTATCGA-TACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATAATATGGTAT-GAGTACTCCCTATCAGTA
* * *
10279411 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTT-CGCAATCTGGAATCCAAG
* * ** * **
10279442 GTATCGATACCATTCTCCTAGTACCGATACTTCTCTTCTATGGTATGAGTACTCCCTATCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATAATATGGTATGAGTACTCCCTATCAGTAT
* *
10279507 CGATACCATTTCTCAATCTGGATTCCAAG
66 CGATACCATTTCGCAATCTGGAATCCAAG
*
10279536 GTATTGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
10279565 TCTTTATGCC
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
93 1 0.01
94 37 0.36
95 65 0.63
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTTCTATAATATGGTATGAGTACTCCCTATCAGTAT
CGATACCATTTCGCAATCTGGAATCCAAG
Found at i:10280149 original size:75 final size:75
Alignment explanation
Indices: 10280007--10280167 Score: 232
Period size: 75 Copynumber: 2.1 Consensus size: 75
10279997 CATACTATGA
* * * *
10280007 TATCGATACCTCTATACTACGATATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATG
1 TATCGATACCTCTATACTACGATATCGATACTCCCTTTCAGTATCAATACAATTTAGGCATTATG
10280072 GAATCCATAG
66 GAATCCATAG
* * * *
10280082 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCAATACAATTTAGGCATTCTG
1 TATCGATACCTCTATACTACGATATCGATACTCCCTTTCAGTATCAATACAATTTAGGCATTATG
*
10280147 GAATCCATGG
66 GAATCCATAG
*
10280157 TATCAATACCT
1 TATCGATACCT
10280168 TTCTCCTAGT
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (75 bp):
TATCGATACCTCTATACTACGATATCGATACTCCCTTTCAGTATCAATACAATTTAGGCATTATG
GAATCCATAG
Found at i:10280198 original size:95 final size:94
Alignment explanation
Indices: 10280079--10280265 Score: 243
Period size: 95 Copynumber: 2.0 Consensus size: 94
10280069 ATGGAATCCA
* * *
10280079 TAGTATCGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTATCAATACAATTTAGGCAT
1 TAGTACCGATACATCTATACTATGGTATCAG-TACTCCCTTTCAGTATCAATACAATTTAGCCA-
*
10280143 TCTGGAATCCATGGTATCAATACCTTTCTCC
64 TCTGGAATCCAAGGTATCAATACCTTTCTCC
* * **
10280174 TAGTACCGATACATCTATTA-TATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCAT
1 TAGTACCGATACATCTA-TACTATGGTATCAGTACTCCCTTTCAGTATCAATACAATTTAGCCAT
* *
10280238 CTGGATTCCAAGGTATCGATACCTTTCT
65 CTGGAATCCAAGGTATCAATACCTTTCT
10280266 TTTAGTACTG
Statistics
Matches: 80, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
94 26 0.32
95 51 0.64
96 3 0.04
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (94 bp):
TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTATCAATACAATTTAGCCATC
TGGAATCCAAGGTATCAATACCTTTCTCC
Found at i:10280859 original size:95 final size:95
Alignment explanation
Indices: 10280720--10281011 Score: 385
Period size: 95 Copynumber: 3.1 Consensus size: 95
10280710 CATACTATGA
* * * *
10280720 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
10280785 GAATCCATAGTATCGATACCTTTCTTCTAG
66 GAATCCATAGTATCGATACCTTTCTTCTAG
* * * *
10280815 TATCGTTACTTCAATACTATGGTATCGATACTCACTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* *
10280880 GAATCCATGGTATCGATACCTTTCTCCTAG
66 GAATCCATAGTATCGATACCTTTCTTCTAG
* * **
10280910 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTCTCCA-TCT
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGCATTCT
*
10280973 GGATTCCA-AGGTATCGATACCTTTC-TCTTAG
65 GGAATCCATA-GTATCGATACCTTTCTTC-TAG
*
10281004 TATTGATA
1 TATCGATA
10281012 TCTTTATGCC
Statistics
Matches: 171, Mismatches: 23, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
93 1 0.01
94 35 0.20
95 135 0.79
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
GAATCCATAGTATCGATACCTTTCTTCTAG
Found at i:10281585 original size:95 final size:95
Alignment explanation
Indices: 10281446--10281691 Score: 336
Period size: 95 Copynumber: 2.6 Consensus size: 95
10281436 CATACTATGA
*
10281446 TATCGATACTTCTATACTA-GG-ATACTGATACTCCCTTTCAGTATCGATACCATTTCGGTATTA
1 TATCGATACTTCTATACTATGGTA-AC-GATACTCCCTTTCAGTATCGATACCATTTCGGCATTA
* *
10281509 TGGAATCCATAGTATCGATACCTTTCTTCTAG
64 TGAAATCCATAGTATCGATACCTTTCTCCTAG
* *
10281541 TATCGATACTTCTATACTATGGTAACGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTAACGATACTCCCTTTCAGTATCGATACCATTTCGGCATTATG
*
10281606 AAATCCATGGTATCGATACCTTTCTCCTAG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
* * * * * *
10281636 TACCCATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGTATGGATACCATTTC
1 TATCGATACTTCTATACTATGGTAACGA-TACTCCCTTTCAGTATCGATACCATTTC
10281692 TCCATCTGGA
Statistics
Matches: 135, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
94 1 0.01
95 129 0.96
96 4 0.03
97 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTAACGATACTCCCTTTCAGTATCGATACCATTTCGGCATTATG
AAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:10281742 original size:128 final size:128
Alignment explanation
Indices: 10281581--10281847 Score: 473
Period size: 128 Copynumber: 2.1 Consensus size: 128
10281571 CTCCCTTTCA
10281581 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
*
10281646 TCTATTCTATGGTATCA-GTACTCCGTTTCAGTATGGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATGGATACCATTTCTCCATCTGGATTCCAAG
* * *
10281709 GTATCAATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
*
10281774 TCTATTCTATGGTATATGTACTCCCTTTCAGTATTGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATGGATACCATTTCTCCATCTGGATTCCAAG
10281837 GTATCGATACC
1 GTATCGATACC
10281848 TTTCTCTTAG
Statistics
Matches: 132, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
127 1 0.01
128 131 0.99
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TCTATTCTATGGTATATGTACTCCCTTTCAGTATGGATACCATTTCTCCATCTGGATTCCAAG
Found at i:10282445 original size:94 final size:95
Alignment explanation
Indices: 10282308--10282598 Score: 374
Period size: 94 Copynumber: 3.1 Consensus size: 95
10282298 CATACTATGA
* * * *
10282308 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCT-
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
*
10282372 GAATCCATAGTATCGATACCTTTCTTCTAG
66 GAATCCATAGTATCGATACCTTTCTCCTAG
* * * *
10282402 TATCGTTACTTCAATACTATGGTATCGATACTCACTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
*
10282467 GAATCCATGGTATCGATACCTTTCTCCTAG
66 GAATCCATAGTATCGATACCTTTCTCCTAG
* * * **
10282497 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTCTCAGTATCGATACCATTTCTCCA-TCT
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGCATTCT
* *
10282560 GGATTCCA-AGGTATCGATACCTTTCTCTTAG
65 GGAATCCATA-GTATCGATACCTTTCTCCTAG
*
10282591 TATTGATA
1 TATCGATA
10282599 TCTTTATGCC
Statistics
Matches: 170, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
94 93 0.55
95 77 0.45
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
GAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:10283172 original size:95 final size:95
Alignment explanation
Indices: 10283037--10283278 Score: 328
Period size: 95 Copynumber: 2.5 Consensus size: 95
10283027 CTATGATATC
* *
10283037 GATACTTCTATACTA-GG-ATACTGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGA
1 GATACTTCTATACTATGGTAT-C-GATACTCCCTTTCAGTATCGATACCATTTCGGCATTATGAA
* *
10283100 ATCCATAGTATCGATACCTTTCTTCTAGTATA
64 ATCCATAGTATCGATACCTTTCTCCTAGTACA
* *
10283132 GATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAAT
1 GATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTATGAAAT
* *
10283197 CCATGGTATCGATACCTTTCTCCTAGTACC
66 CCATAGTATCGATACCTTTCTCCTAGTACA
* * * *
10283227 CATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGTATGGATACCATTTC
1 GATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
10283279 TCCATCTGGA
Statistics
Matches: 131, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
94 1 0.01
95 125 0.95
96 3 0.02
97 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.38
Consensus pattern (95 bp):
GATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTATGAAAT
CCATAGTATCGATACCTTTCTCCTAGTACA
Found at i:10283329 original size:128 final size:128
Alignment explanation
Indices: 10283168--10283434 Score: 455
Period size: 128 Copynumber: 2.1 Consensus size: 128
10283158 CTCCCTTTCA
*
10283168 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCAAGTACCCATACT
* *
10283233 TCTATTCTATGGTAT-CAGTACTCCGTTTCAGTATGGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATAC-GTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
* * *
10283296 GTATCAATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCAAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCAAGTACCCATACT
10283361 TCTATTCTATGGTATACGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATACGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
*
10283424 GTTTCGATACC
1 GTATCGATACC
10283435 TTTCTCTTAG
Statistics
Matches: 130, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
128 129 0.99
129 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCAAGTACCCATACT
TCTATTCTATGGTATACGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:10284003 original size:862 final size:862
Alignment explanation
Indices: 10282442--10290267 Score: 9983
Period size: 862 Copynumber: 9.0 Consensus size: 862
10282432 CTCACTTTCA
10282442 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
10282507 TCTATTCTATGGTATCA-GTACTCCCTCTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
66 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
*
10282571 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTGGGCATTTATCTTTC
130 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
* *
10282636 ATTTTAAAACAGTTCTTAAACTAAAAGTTATTCATAATATCAATTCCACACACATTATAAACCTA
195 ATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
* *
10282701 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAG--T--CT-
260 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTC
* *
10282761 ---CCATATAATTACAATATATGCACTCAACTAATATACTGTAGTGACGTCCAACTACTCGGCAA
325 AACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAA
*
10282823 CTTTGTCCTTTCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATT
390 CTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATT
* *
10282888 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATAATTTAGTAATAATCAAAAG
455 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
*
10282953 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATTG
520 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
* *
10283018 GTACCCATACTATGATATCGATACTTCTATACTAGGATACTGATACTCCCTTTCAGTATCGATAC
585 GTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATAC
* *
10283083 CATTTCGGTATTATGGAATCCATAGTATCGATACCTTTCTTCTAGTATAGATACTTCTATACTAT
650 CATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTAT
10283148 GGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACC
715 GGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACC
* *
10283213 TTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGTATGGATACCATTT
780 TTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGTATCGATACCATTT
10283278 CTCCATCTGGATTCCAAG
845 CTCCATCTGGATTCCAAG
* *
10283296 GTATCAATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCAAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
10283361 TCTATTCTATGGTATACGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
*
10283426 TTCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
10283491 TTTTAAAACAGTTCTTAAAGTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
*
10283556 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGACGTGGACTTATTGTGAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
* * * * * *
10283621 ACCCATATAATTACAACATATAG-ATTCACCTGATATTCTGTAGTGACGTCTAACTACTCAACAA
326 ACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAA
* * * * * *
10283685 CTTTTTCCTTGCCTTTTTTCTTGCCTGACT-CGAGAGCTTGGTTATAATCTACATAACCACCCAT
390 CTTTGTCCTTGCCCTTTTTCTTACCTGACTAAG-GAGCTTGGTTATAATCTACACAAGCACCCAT
*
10283749 TTAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
454 TTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
*
10283814 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCGTGGCTCAATAGTATC
519 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
10283879 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
584 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
*
10283944 CCATTTCAGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTA
649 CCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTA
** * * * *
10284009 TCATATCGATACTCCCTTTCAGTATCGATACCATTTAGGAATTATGGAATCCATTGTATCGATAC
714 TGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATAC
* * *
10284074 CTTTTCTCCTAGTATCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATTCCAT
779 C-TTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGTATCGATACCAT
*
10284139 TTCTCCATATGGATTCCAAG
843 TTCTCCATCTGGATTCCAAG
10284159 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* * *
10284224 TCTAATCTATGGTATCA-GTACTCCCTTTTAGTATCGATACCATTTCTCCATCTGGATTCCAGGG
66 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
*
10284288 TATCAATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
130 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
10284353 ATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
195 ATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
*
10284418 TATCAAATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTC
260 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTC
10284483 AACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAA
325 AACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAA
**
10284548 CTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCAATCATT
390 CTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATT
**
10284613 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTTTTAATACTCAAAAG
455 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
10284678 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
520 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
*
10284743 GTACCCATACTATGATATCGATACTTCTATAATACGATACCGATACTCCCTTTCAGTATCGATAC
585 GTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATAC
10284808 CATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTAT
650 CATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTAT
*
10284873 GGTATCGATACTCCATTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACC
715 GGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACC
* *
10284938 TTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCGTTTCGGTATCGATACCATTT
780 TTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGTATCGATACCATTT
10285003 CTCCATCTGGATTCCAAG
845 CTCCATCTGGATTCCAAG
* *
10285021 GTATGGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACTTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
10285086 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
*
10285151 ATCGATACCTATCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
10285216 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* *
10285281 ATCAAAGAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
10285346 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
* **
10285411 TTTGTCTTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCAATCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
* *
10285476 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTTGTAATACTC-GAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
10285540 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* * *
10285605 TACCCATACTATGATTTCGATACTTCTATACAACGATACCGATACTCCCTTTCAGTATCAATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
10285670 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
* *
10285735 ATATCGATACTCCCTTTCAGTATCGATCCCATTTAGGCATTCTGAAATCCATGGTATCGATACCT
716 GTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCT
* *
10285800 TTCTCCTAGTACCCATACTTCTATTCTATGGTATTAGTACTCCGTTTCAGTATCGATACCATTTC
781 TTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGTATCGATACCATTTC
10285865 TCCATCTGGATTCCAAG
846 TCCATCTGGATTCCAAG
* * *
10285882 GTATCGATACCAGTTAGGCATTCTGGAATCCATGGTATTGATACTTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* *
10285947 TCTATTCTATGGTATATGTACTCCCTTTCAGTGTCGATACCATTTCTCCATCTGGATTCCAAAGT
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
*
10286012 ATCGATACCTTTCTCTTAGAATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
10286077 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
*
10286142 ATCATATAAGGTAAAACCTACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
* * * * * *
10286207 ACCCATATAATTACAACATATAG-ACTCACCTGATATGCTATAGTGACGTCTAACTACTCAACAA
326 ACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAA
* * * * * * *
10286271 CGTTT-TACTTTCCTTTTTTCTTGCCTGACT-CGAGAGCTTGGTTATTATCTACATAAGCACCCA
390 C-TTTGTCCTTGCCCTTTTTCTTACCTGACTAAG-GAGCTTGGTTATAATCTACACAAGCACCCA
* *
10286334 TTTAGTTCTCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAA
453 TTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAA
10286399 AGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTAT
518 AGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTAT
* * *
10286464 TGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCTTTTCCGTATCGAT
583 CGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGAT
*
10286529 ACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTATTCTAGTATCGATACTTCTATACT
648 ACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACT
10286594 ATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATA
713 ATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATA
*
10286659 CCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGTATCGATACCAT
778 CCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGTATCGATACCAT
*
10286724 TTCTCCATCTGGATTTCAAG
843 TTCTCCATCTGGATTCCAAG
10286744 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
10286809 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
*
10286874 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCTTTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
10286939 TTTTAAAATAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* *
10287004 ATCATATAAGGTAAAATATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCACTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
* * * * * * *
10287069 ACCCATATAATTACAACATCTAG-ATTCACCTGATATGCTGTAGTGACGTCTAACTACTCAACAA
326 ACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAA
* * * * * *
10287133 CTTTTTCCTTGCCTTTTTTCTTGCCTGACT-CGAAGCTTGGTTATAATCTACATAAGCACCCATT
390 CTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATT
*
10287197 TAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
455 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
10287262 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
520 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
*
10287327 GTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAATATCGATAC
585 GTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATAC
10287392 CATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTAT
650 CATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTAT
* * *
10287457 GGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTATGGAACCCATGGTATCGATACC
715 GGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACC
*
10287522 TTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTT
780 TTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGTATCGATACCATTT
10287587 CTCCATCTGGATTCCAAG
845 CTCCATCTGGATTCCAAG
* ** * * *
10287605 GTATCGATACCTTTCTCTTAGTATTG-ATATCT-TTATGCCAAAT-GCA-CAGTTAGGCATTTAT
1 GTATCGATACC---AT-TTAG----GCAT-TCTGGAAT-CC--ATGGTATC-GATA--C-CTT-T
* ** ** * ** * * * * * * *
10287666 CTTTCATTTTA-AAATAGTTCTTAAACTA---AAAAT-TA-TTCATAATATCAAT-TCCACACAC
49 C--TCCTAGTACCGATACTTC-TATTCTATGGTATATGTACTCCCT--T-TCAGTATCGATAC-C
*** * ** * * ** **
10287724 ATTATAAACATAT--ATCATATAAGGTAAAAC-ATACATTAAT-TTAAACATTTGAGGTAGACTT
107 ATT-TCTCCATCTGGAT--TCCAAGGT--ATCGATACCTTTCTCTT-AGTA-TTGA--T--A--T
* * * * * * ** * ** * **
10287785 ATTGTGAGTCTCCCTCAA-CCAAATAATTACAACATATAGACTCACCTGATATGCTGTAGTGAC-
159 CTT-T-A---TGCC-AAATGC--ACAGTTA-GGCAT-T-TA-TC-TTTCAT-T--T-TA-AAACA
* * **** *** ** ** * ** *
10287848 G-TC-TAACTACTCAACAACGTT-TTCCTTGCCTTTTTTCTTGC-CTGACTCGAAAGC-T-TGGT
206 GTTCTTAA--ACT-AA-AA-ATTATTCATAATATCAATTC-CACACACATTATAAA-CATAT-AT
** ** * * * * * * * * * ***
10287907 --TATAATCTACATAAGCACCCATTTAGTT-CACATATCA--T--AC-AAATGTTAGTATATTAT
263 CATATAAGGTA-A-AA-CATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCT-CCCT
*** * * * ** * * * ** ** *
10287964 CTAACATTTATACTT-TAGTA-AT--ACTCAAAAGTACTAATACTTTTAATTTC-TATAACAACT
324 C-AACCCATATAATTACAATATATGCACTC--ACCTAAT-ATAC-TGTAGTGACGTCCAACTAC-
* * * * * * * * * * * * ** *
10288024 TCAACCGATCTTATAATTCCTGGCTCAATAGTATCGGTATCCAT-ACTATGATATCGATACTTCT
383 TCGA-C-AACTT-T--GTCCTTGC-C-CT-TTTTC-TTA-CC-TGACTAAG-GAGC-TTGGTTAT
* * * * ** * *
10288088 -ATACTACGATACCGACACTCCCTTTCAGTTTCA-ATACCATATCGGTAT-TCTGGAATCCATAG
435 AAT-CTAC-ACA-AG-CAC-CCATTT-AG-TACACATACCATA-C-AAATGT-T--AGT--ATAT
* * *** * *
10288150 TATCGATAC-CTT-T-CTTCTAGTATCGATACTCCCTTTCAGTA-TCGATACCATTTAGGCA-TT
486 TATCTA-ACATTTATACTT-TAGTA---ATACT--C-AAAAGTACT-AATA-CTTTTA---ATTT
* * *** * ** * * * * * *
10288210 C--TGA-AA-TCCATGGTATC-GAT-A--CCTTTCTC-GTAGTACCGATACTTCTATTCTATGGT
538 CTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTAC--CCATACTATGAT
* * *
10288266 ATC-AGTACTTCCTTTCAGTATCGATACC-ATTTCTCCATCTGGATTCCAAGGTATCGATACCAT
601 ATCGA-TACTT-CTAT-ACTA-CGATACCGA-TACTCC--CT---TT-C-A-GTATCGATACCAT
* * * * * *
10288329 TTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGT
653 TTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATGGT
*** * * * *
10288394 ATC-AGTACTCCCTTTCAGTATCGATACCATTTCTCCA-TCTGGATTCCAAGGTATCAATACCTT
718 ATCGA-TACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTT
* ** * *
10288457 TCT-CTA--A--G-TA-TT-GATATAAATGG-AT--GT-C-CC--TT--GT-TC----CCATATA
782 TCTCCTAGTACCGATACTTCTAT-TCTATGGTATCAGTACTCCGTTTCAGTATCGATACCATTTC
* **
10288500 T--A-ATGGGGT--AAG
846 TCCATCTGGATTCCAAG
**** * ** * * *** * *
10288512 GGGGAGGTAAGATAGTAGGC-TACCCCCAA--CACTAGGT-T-GATAGCAAC-TTC-CGTAGGAG
1 GTATCGATACCAT-TTAGGCAT-TCTGGAATCCA-T-GGTATCGATA-C--CTTTCTCCTA-G-T
* * * * * ** ** *
10288570 ACCTCCA-AATTATGAAATACCCTCCATGGGACTCGATCCCACGACC--TCAAGGT-TAAGA-AC
57 A-C-CGATACTTCT---AT----TCTATGGTA-T--AT-GTACTCCCTTTC-A-GTAT-CGATAC
* * * * ** *
10288630 CTTGTGCTCTACCAACT-GA--GC-TGGATAGTC-ATTTC-TACTCTTAGTATTGATATCTTTAT
106 CAT-T--TCT-CCATCTGGATTCCAAGG-TA-TCGATACCTTTCTCTTAGTATTGATATCTTTAT
* *
10288689 GCCAAATGCAAAGTTAGGCATTTATCTTTCATTTTAAAATAGTTCTTAAACTAAAAATTATTCAT
165 GCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCAT
*
10288754 AATATCAATTCCACACACATTATAAACATATATCATATAAGGTACAACATACATTAATTTAAACA
230 AATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAATTTAAACA
10288819 TTTGAGGTGGACTTATTGTGAGTCTCCCTCAACCCATATAATTACAATATATGCACTCACCTAAT
295 TTTGAGGTGGACTTATTGTGAGTCTCCCTCAACCCATATAATTACAATATATGCACTCACCTAAT
10288884 ATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGA
360 ATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGA
*
10288949 GCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTTTATTATC
425 GCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATC
10289014 TAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACC
490 TAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACC
*
10289079 TATCTTATAATTCCTGGTTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTAC
555 TATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTAC
10289144 GATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACC
620 GATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACC
* *
10289209 TTTCTTCTAGAATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTAACGATACCATTT
685 TTTCTTCTAGTATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTT
* *
10289274 AGGCATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTAT
750 AGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTAT
*
10289339 CAGTACTCCGTTTCAGTATCGATACCATTTCTCCATCTGGATTTCAAG
815 CAGTACTCCGTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
*
10289387 GTATCGATACCATTTAGGCATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* * *
10289452 TCTATTTTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCTATCTGGATGCCAAGGT
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* *
10289517 ATCAATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATACACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
10289582 TTTTAAAACAGTTATTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* *
10289647 ATCATATAAGGTAAAACATATATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCATCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
*
10289712 ACCCATATAATTACATTATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
10289777 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
* * *
10289842 AGTACAGATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATAATGAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
* * *
10289907 ACTAATACTATTAATTTCTATAACAACTTCAACATATCTTATAATTCCTGGCTCAATAGTATCCG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
10289972 TACCCATACTATGATATCGATACTTCTATACTTCTATACTACGATACCGATACTCCCTTTCAGTA
586 TACCCATACTATGATATCG--------ATACTTCTATACTACGATACCGATACTCCCTTTCAGTA
*
10290037 TCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGGTACTTCT
643 TCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCT
*
10290102 ATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTTG-AGTCCATGGTA
708 ATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTC-TGAAATCCATGGTA
*
10290166 TCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGA
772 TCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGTATCGA
* *
10290231 CACCATTTCTCAATCTGGATTCCAAG
837 TACCATTTCTCCATCTGGATTCCAAG
10290257 GTATCGATACC
1 GTATCGATACC
10290268 TTTCTCTTAG
Statistics
Matches: 6083, Mismatches: 602, Indels: 558
0.84 0.08 0.08
Matches are distributed among these distances:
848 102 0.02
849 27 0.00
850 4 0.00
851 3 0.00
852 4 0.00
853 1 0.00
854 313 0.05
855 11 0.00
856 29 0.00
857 10 0.00
858 15 0.00
859 26 0.00
860 19 0.00
861 1289 0.21
862 2199 0.36
863 818 0.13
864 7 0.00
865 17 0.00
866 12 0.00
867 5 0.00
868 7 0.00
869 10 0.00
870 270 0.04
871 17 0.00
872 14 0.00
873 26 0.00
874 26 0.00
875 38 0.01
876 26 0.00
877 7 0.00
878 6 0.00
879 14 0.00
880 27 0.00
881 9 0.00
882 15 0.00
883 23 0.00
884 21 0.00
885 16 0.00
886 3 0.00
887 6 0.00
888 5 0.00
889 3 0.00
890 8 0.00
891 7 0.00
892 5 0.00
893 5 0.00
894 6 0.00
895 6 0.00
896 21 0.00
897 26 0.00
898 26 0.00
899 16 0.00
900 14 0.00
901 28 0.00
902 15 0.00
903 7 0.00
904 9 0.00
905 8 0.00
906 12 0.00
907 12 0.00
908 12 0.00
909 8 0.00
910 9 0.00
911 10 0.00
912 9 0.00
913 1 0.00
914 3 0.00
915 5 0.00
916 12 0.00
917 8 0.00
918 3 0.00
919 2 0.00
920 5 0.00
921 18 0.00
922 18 0.00
923 21 0.00
924 9 0.00
925 10 0.00
926 28 0.00
927 11 0.00
928 10 0.00
930 4 0.00
931 3 0.00
932 4 0.00
933 26 0.00
934 103 0.02
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.36
Consensus pattern (862 bp):
GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
GTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCT
TTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGTATCGATACCATTTC
TCCATCTGGATTCCAAG
Found at i:10284139 original size:96 final size:95
Alignment explanation
Indices: 10283895--10284141 Score: 363
Period size: 95 Copynumber: 2.6 Consensus size: 95
10283885 CATACTATGA
* * * *
10283895 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCAGTATTCTG
1 TATCGATACTTCTATACTATGATATCGATACTCCCTTTCAGTATCGATACCATTTCAGAATTATG
*
10283960 GAATCCATAGTATCGATACCTTTCTTCTAG
66 GAATCCATAGTATCGATACCTTTCTCCTAG
*
10283990 TATCGATACTTCTATACTATCATATCGATACTCCCTTTCAGTATCGATACCATTT-AGGAATTAT
1 TATCGATACTTCTATACTATGATATCGATACTCCCTTTCAGTATCGATACCATTTCA-GAATTAT
*
10284054 GGAATCCATTGTATCGATACCTTTTCTCCTAG
65 GGAATCCATAGTATCGATACC-TTTCTCCTAG
* * *
10284086 TATCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATTCCATTTC
1 TATCGATACTTCTATACTATGATATCGA-TACTCCCTTTCAGTATCGATACCATTTC
10284142 TCCATATGGA
Statistics
Matches: 137, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
94 1 0.01
95 78 0.57
96 58 0.42
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.39
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGATATCGATACTCCCTTTCAGTATCGATACCATTTCAGAATTATG
GAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:10284172 original size:33 final size:34
Alignment explanation
Indices: 10284126--10284210 Score: 93
Period size: 34 Copynumber: 2.6 Consensus size: 34
10284116 CTCCCTTTCA
* *
10284126 GTATCGATTCCATTTCTCCA-TATGGATTCCAAG
1 GTATCGATACCATTTCTCCATTATGGAATCCAAG
*** * *
10284159 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTATGGAATCCAAG
10284193 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
10284211 TAGTACCGAT
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
33 20 0.49
34 21 0.51
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTATGGAATCCAAG
Found at i:10284259 original size:128 final size:129
Alignment explanation
Indices: 10284030--10284297 Score: 439
Period size: 128 Copynumber: 2.1 Consensus size: 129
10284020 CTCCCTTTCA
* *
10284030 GTATCGATACCATTTAGGAATTATGGAATCCATTGTATCGATACCTTTTCTCCTAGTATCGATAC
1 GTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCTTTTCTCCTAGTACCGATAC
* *
10284095 TTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATTCCATTTCTCCATATGGATTCCAAG
66 TTCTAATCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
* *
10284159 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACC-TTTCTCCTAGTACCGATAC
1 GTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCTTTTCTCCTAGTACCGATAC
* * *
10284223 TTCTAATCTATGGTATCAGTACTCCCTTTTAGTATCGATACCATTTCTCCATCTGGATTCCAGG
66 TTCTAATCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
*
10284287 GTATCAATACC
1 GTATCGATACC
10284298 TTTCTCTTAG
Statistics
Matches: 129, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
128 87 0.67
129 42 0.33
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (129 bp):
GTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCTTTTCTCCTAGTACCGATAC
TTCTAATCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
Found at i:10284897 original size:95 final size:95
Alignment explanation
Indices: 10284758--10285003 Score: 341
Period size: 95 Copynumber: 2.6 Consensus size: 95
10284748 CATACTATGA
* * * * * *
10284758 TATCGATACTTCTATAATACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCATTTCAGTATCGATACCATTTCGGCATTCTG
* *
10284823 GAATCCATAGTATCGATACCTTTCTTCTAG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
*
10284853 TATCGATACTTCTATACTATGGTATCGATACTCCATTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCATTTCAGTATCGATACCATTTCGGCATTCTG
*
10284918 AAATCCATGGTATCGATACCTTTCTCCTAG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
* * * * *
10284948 TACCCATACTTCTATTCTATGGTATC-AGTACTCCGTTTCGGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCATTTCAGTATCGATACCATTTC
10285004 TCCATCTGGA
Statistics
Matches: 134, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
94 1 0.01
95 133 0.99
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCATTTCAGTATCGATACCATTTCGGCATTCTG
AAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:10285058 original size:128 final size:128
Alignment explanation
Indices: 10284893--10285159 Score: 464
Period size: 128 Copynumber: 2.1 Consensus size: 128
10284883 CTCCATTTCA
10284893 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
* *
10284958 TCTATTCTATGGTATCA-GTACTCCGTTTCGGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
* * * *
10285021 GTATGGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACTTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
10285086 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
10285149 GTATCGATACC
1 GTATCGATACC
10285160 TATCTCTTAG
Statistics
Matches: 131, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
127 1 0.01
128 130 0.99
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:10285758 original size:95 final size:95
Alignment explanation
Indices: 10285621--10285864 Score: 328
Period size: 95 Copynumber: 2.6 Consensus size: 95
10285611 TACTATGATT
* * * * * *
10285621 TCGATACTTCTATACAACGATACCGATACTCCCTTTCAGTATCAATACCATTTCGGTATTCTGGA
1 TCGATACTTCTATACTATGATATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTGAA
*
10285686 ATCCATAGTATCGATACCTTTCTTCTAGTA
66 ATCCATAGTATCGATACCTTTCTCCTAGTA
* *
10285716 TCGATACTTCTATACTATGATATCGATACTCCCTTTCAGTATCGATCCCATTTAGGCATTCTGAA
1 TCGATACTTCTATACTATGATATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTGAA
*
10285781 ATCCATGGTATCGATACCTTTCTCCTAGTA
66 ATCCATAGTATCGATACCTTTCTCCTAGTA
* * * * * *
10285811 CCCATACTTCTATTCTATGGTAT-TAGTACTCCGTTTCAGTATCGATACCATTTC
1 TCGATACTTCTATACTATGATATCGA-TACTCCCTTTCAGTATCGATACCATTTC
10285865 TCCATCTGGA
Statistics
Matches: 130, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
94 1 0.01
95 129 0.99
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.37
Consensus pattern (95 bp):
TCGATACTTCTATACTATGATATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTGAA
ATCCATAGTATCGATACCTTTCTCCTAGTA
Found at i:10285984 original size:128 final size:128
Alignment explanation
Indices: 10285753--10286020 Score: 439
Period size: 128 Copynumber: 2.1 Consensus size: 128
10285743 ACTCCCTTTC
* *
10285753 AGTATCGATCCCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATAC
1 AGTATCGATACCAGTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATAC
*
10285818 TTCTATTCTATGGTATTAGTACTCCGTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAA
66 TTCTATTCTATGGTATTAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAA
* * * * *
10285881 GGTATCGATACCAGTTAGGCATTCTGGAATCCATGGTATTGATACTTTTCTCCTAGTACCGATAC
1 AGTATCGATACCAGTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATAC
*
10285946 TTCTATTCTATGGTA-TATGTACTCCCTTTCAGTGTCGATACCATTTCTCCATCTGGATTCCAA
66 TTCTATTCTATGGTATTA-GTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAA
10286009 AGTATCGATACC
1 AGTATCGATACC
10286021 TTTCTCTTAG
Statistics
Matches: 129, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
127 2 0.02
128 127 0.98
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (128 bp):
AGTATCGATACCAGTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATAC
TTCTATTCTATGGTATTAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAA
Found at i:10286578 original size:20 final size:21
Alignment explanation
Indices: 10286553--10286606 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
10286543 CTGGAATCCA
*
10286553 TAGTATCGATACCTT-TATTC
1 TAGTATCGATACCTTCTATAC
10286573 TAGTATCGATA-CTTCTATAC
1 TAGTATCGATACCTTCTATAC
10286593 TATGGTATCGATAC
1 TA--GTATCGATAC
10286607 TCCCTTTCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 3 0.10
20 17 0.59
22 9 0.31
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.41
Consensus pattern (21 bp):
TAGTATCGATACCTTCTATAC
Found at i:10286620 original size:95 final size:95
Alignment explanation
Indices: 10286481--10286726 Score: 341
Period size: 95 Copynumber: 2.6 Consensus size: 95
10286471 CATACTATGA
* * * * * *
10286481 TATCGATACTTCTATACTACGATACCGATACTCCTTTTCCGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* *
10286546 GAATCCATAGTATCGATACCTTTATTCTAG
66 AAATCCATAGTATCGATACCTTTATCCTAG
*
10286576 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* *
10286641 AAATCCATGGTATCGATACCTTTCTCCTAG
66 AAATCCATAGTATCGATACCTTTATCCTAG
* * * *
10286671 TACCCATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
10286727 TCCATCTGGA
Statistics
Matches: 134, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
94 1 0.01
95 133 0.99
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.38
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
AAATCCATAGTATCGATACCTTTATCCTAG
Found at i:10286748 original size:33 final size:34
Alignment explanation
Indices: 10286711--10286795 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 34
10286701 CTCCGTTTCA
* *
10286711 GTATCGATACCATTTCTCCA-TCTGGATTTCAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** *
10286744 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
10286778 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
10286796 TAGTACCGAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
33 21 0.50
34 21 0.50
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:10286775 original size:128 final size:128
Alignment explanation
Indices: 10286616--10286882 Score: 482
Period size: 128 Copynumber: 2.1 Consensus size: 128
10286606 CTCCCTTTCA
10286616 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
* *
10286681 TCTATTCTATGGTATCA-GTACTCCGTTTCAGTATCGATACCATTTCTCCATCTGGATTTCAAG
66 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
* *
10286744 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
10286809 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
10286872 GTATCGATACC
1 GTATCGATACC
10286883 TTTCTCTTAG
Statistics
Matches: 134, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
127 1 0.01
128 133 0.99
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:10286781 original size:34 final size:33
Alignment explanation
Indices: 10286711--10286788 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
10286701 CTCCGTTTCA
** * *
10286711 GTATCGATACCATTTCTCCATCTGGATTTCAAG
1 GTATCGATACCATTTAGCCATCTGGAATCCAAG
* *
10286744 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTAGCCA-TCTGGAATCCAAG
10286778 GTATCGATACC
1 GTATCGATACC
10286789 TTTCTCCTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
33 17 0.45
34 21 0.55
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (33 bp):
GTATCGATACCATTTAGCCATCTGGAATCCAAG
Found at i:10287482 original size:95 final size:95
Alignment explanation
Indices: 10287342--10287633 Score: 385
Period size: 95 Copynumber: 3.1 Consensus size: 95
10287332 CATACTATGA
* * * * *
10287342 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAATATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
10287407 GAATCCATAGTATCGATACCTTTCTTCTAG
66 GAATCCATAGTATCGATACCTTTCTTCTAG
* *
10287437 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTATG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* * *
10287502 GAACCCATGGTATCGATACCTTTCTCCTAG
66 GAATCCATAGTATCGATACCTTTCTTCTAG
* * **
10287532 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTCTCCA-TCT
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGCATTCT
*
10287595 GGATTCCA-AGGTATCGATACCTTTC-TCTTAG
65 GGAATCCATA-GTATCGATACCTTTCTTC-TAG
*
10287626 TATTGATA
1 TATCGATA
10287634 TCTTTATGCC
Statistics
Matches: 172, Mismatches: 22, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
93 1 0.01
94 33 0.19
95 138 0.80
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
GAATCCATAGTATCGATACCTTTCTTCTAG
Found at i:10287904 original size:733 final size:711
Alignment explanation
Indices: 10286744--10288326 Score: 2747
Period size: 733 Copynumber: 2.2 Consensus size: 711
10286734 GGATTTCAAG
10286744 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
10286809 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
66 TCTATTCTATGGTATCA-GTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
*
10286873 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCTTTTATCTTTC
130 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
10286938 ATTTTAAAATAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
195 ATTTTAAAATAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
* *
10287003 TATCATATAAGGTAAAATATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCACTC
260 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTAGACTTATTGTGAGTCTCACTC
* * *
10287068 AACCCATATAATTACAACATCTAGATTCACCTGATATGCTGTAGTGACGTCTAACTACTCAACAA
325 AACCCAAATAATTACAACATATAGACTCACCTGATATGCTGTAGTGACGTCTAACTACTCAACAA
*
10287133 CTTTTTCCTTGCCTTTTTTCTTGCCTGACTCGAAGCTTGGTTATAATCTACATAAGCACCCATTT
390 CGTTTTCCTTGCCTTTTTTCTTGCCTGACTCGAAGCTTGGTTATAATCTACATAAGCACCCATTT
10287198 AGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
455 AGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
*
10287263 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
520 ACTAATACTTTTAATTTCTATAACAACTTCAACCGATCTTATAATTCCTGGCTCAATAGTATCGG
* *
10287328 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAATATCGATACC
585 TACCCATACTATGATATCGATACTTCTATACTACGATACCGACACTCCCTTTCAATATCAATACC
*
10287393 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
650 ATATCGGTATTCTGGAATCCATAGTATCGATA--------C------C--T--TTCT-T-CTA--
10287458 GTATCGATACTCCCTTTCA
693 GTATCGATACTCCCTTTCA
* *
10287477 GTATCGATACCATTTAGGCATTATGGAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
10287542 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
10287607 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
10287672 TTTTAAAATAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAATAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
*
10287737 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTAGACTTATTGTGAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTAGACTTATTGTGAGTCTCACTCA
10287802 A-CCAAATAATTACAACATATAGACTCACCTGATATGCTGTAGTGACGTCTAACTACTCAACAAC
326 ACCCAAATAATTACAACATATAGACTCACCTGATATGCTGTAGTGACGTCTAACTACTCAACAAC
10287866 GTTTTCCTTGCCTTTTTTCTTGCCTGACTCGAAAGCTTGGTTATAATCTACATAAGCACCCATTT
391 GTTTTCCTTGCCTTTTTTCTTGCCTGACTCG-AAGCTTGGTTATAATCTACATAAGCACCCATTT
*
10287931 AGTTCACATATCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
455 AGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
10287996 ACTAATACTTTTAATTTCTATAACAACTTCAACCGATCTTATAATTCCTGGCTCAATAGTATCGG
520 ACTAATACTTTTAATTTCTATAACAACTTCAACCGATCTTATAATTCCTGGCTCAATAGTATCGG
* * *
10288061 TATCCATACTATGATATCGATACTTCTATACTACGATACCGACACTCCCTTTCAGTTTCAATACC
585 TACCCATACTATGATATCGATACTTCTATACTACGATACCGACACTCCCTTTCAATATCAATACC
10288126 ATATCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTCCCTTTCA
650 ATATCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTCCCTTTCA
* *
10288188 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCGTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
10288253 TCTATTCTATGGTATCAGTACTTCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
10288318 ATCGATACC
131 ATCGATACC
10288327 ATTTAGGCAT
Statistics
Matches: 825, Mismatches: 23, Indels: 26
0.94 0.03 0.03
Matches are distributed among these distances:
711 153 0.19
713 3 0.00
714 1 0.00
715 4 0.00
717 1 0.00
719 1 0.00
725 1 0.00
732 90 0.11
733 570 0.69
734 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (711 bp):
GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
TTTTAAAATAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTAGACTTATTGTGAGTCTCACTCA
ACCCAAATAATTACAACATATAGACTCACCTGATATGCTGTAGTGACGTCTAACTACTCAACAAC
GTTTTCCTTGCCTTTTTTCTTGCCTGACTCGAAGCTTGGTTATAATCTACATAAGCACCCATTTA
GTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTA
CTAATACTTTTAATTTCTATAACAACTTCAACCGATCTTATAATTCCTGGCTCAATAGTATCGGT
ACCCATACTATGATATCGATACTTCTATACTACGATACCGACACTCCCTTTCAATATCAATACCA
TATCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTCCCTTTCA
Found at i:10288185 original size:73 final size:73
Alignment explanation
Indices: 10288097--10288252 Score: 215
Period size: 73 Copynumber: 2.1 Consensus size: 73
10288087 TATACTACGA
* * * * *
10288097 TACCGACACTCCCTTTCAGTTTCAATACCATATCGGTATTCTGGAATCCATAGTATCGATACCTT
1 TACCGATACTCCCTTTCAGTATCAATACCATATAGGCATTCTGAAATCCATAGTATCGATACCTT
10288162 TCTTC-TAG
66 TC-TCGTAG
* * * *
10288170 TATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTT
1 TACCGATACTCCCTTTCAGTATCAATACCATATAGGCATTCTGAAATCCATAGTATCGATACCTT
10288235 TCTCGTAG
66 TCTCGTAG
10288243 TACCGATACT
1 TACCGATACT
10288253 TCTATTCTAT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
72 2 0.03
73 70 0.97
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.35
Consensus pattern (73 bp):
TACCGATACTCCCTTTCAGTATCAATACCATATAGGCATTCTGAAATCCATAGTATCGATACCTT
TCTCGTAG
Found at i:10288325 original size:33 final size:34
Alignment explanation
Indices: 10288283--10288367 Score: 111
Period size: 34 Copynumber: 2.6 Consensus size: 34
10288273 CTTCCTTTCA
*
10288283 GTATCGATACCATTTCTCCA-TCTGGATTCCAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** *
10288316 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
10288350 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
10288368 TAGTACCGAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 21 0.49
34 22 0.51
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:10288339 original size:128 final size:128
Alignment explanation
Indices: 10288188--10288454 Score: 498
Period size: 128 Copynumber: 2.1 Consensus size: 128
10288178 CTCCCTTTCA
*
10288188 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCGTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
10288253 TCTATTCTATGGTATCAGTACTTCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
*
10288316 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
10288381 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
*
10288444 GTATCAATACC
1 GTATCGATACC
10288455 TTTCTCTAAG
Statistics
Matches: 135, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
128 135 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:10289267 original size:95 final size:95
Alignment explanation
Indices: 10289125--10289369 Score: 357
Period size: 95 Copynumber: 2.6 Consensus size: 95
10289115 ATACTATGAT
* * * * *
10289125 ATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGG
1 ATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTATGG
*
10289190 AATCCATAGTATCGATACCTTTCTTCTAGA
66 AATCCATAGTATCGATACCTTTCTCCTAGA
* *
10289220 ATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTAACGATACCATTTAGGCATTATGG
1 ATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTATGG
* *
10289285 AATCCATGGTATCGATACCTTTCTCCTAGT
66 AATCCATAGTATCGATACCTTTCTCCTAGA
* * *
10289315 ACCGATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGTATCGATACCATTTC
1 ATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
10289370 TCCATCTGGA
Statistics
Matches: 134, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
94 1 0.01
95 133 0.99
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.36
Consensus pattern (95 bp):
ATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTATGG
AATCCATAGTATCGATACCTTTCTCCTAGA
Found at i:10289424 original size:128 final size:128
Alignment explanation
Indices: 10289263--10289525 Score: 456
Period size: 128 Copynumber: 2.1 Consensus size: 128
10289253 CTTTCAGTAA
10289263 CGATACCATTTAGGCATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTA
1 CGATACCATTTAGGCATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTA
* **
10289328 TTCTATGGTATCA-GTACTCCGTTTCAGTATCGATACCATTTCTCCATCTGGATTTCAAGGTAT
66 TTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATGCCAAGGTAT
10289391 CGATACCATTTAGGCATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTA
1 CGATACCATTTAGGCATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTA
* *
10289456 TTTTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCTATCTGGATGCCAAGGTAT
66 TTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATGCCAAGGTAT
*
10289519 CAATACC
1 CGATACC
10289526 TTTCTCTTAG
Statistics
Matches: 128, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
127 1 0.01
128 127 0.99
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (128 bp):
CGATACCATTTAGGCATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTA
TTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATGCCAAGGTAT
Found at i:10290131 original size:95 final size:95
Alignment explanation
Indices: 10289999--10290285 Score: 359
Period size: 95 Copynumber: 3.0 Consensus size: 95
10289989 CGATACTTCT
* * *
10289999 ATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATC
1 ATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATC
10290064 CATAGTATCGATACCTTTCTTCTAGTATCG
66 CATAGTATCGATACCTTTCTTCTAGTATCG
* * * * *
10290094 GTACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTTGAGTC
1 ATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATC
* * *
10290159 CATGGTATCGATACCTTTCTCCTAGTACCG
66 CATAGTATCGATACCTTTCTTCTAGTATCG
* * * *
10290189 ATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGACACCATTTC--TCAATCTGGAT
1 ATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGT-ATTCTGGAA
*
10290251 TCCA-AGGTATCGATACCTTTC-TCTTAGTATTG
64 TCCATA-GTATCGATACCTTTCTTC-TAGTATCG
10290283 ATA
1 ATA
10290286 TCTTTATGCC
Statistics
Matches: 165, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
93 1 0.01
94 35 0.21
95 129 0.78
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.38
Consensus pattern (95 bp):
ATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATC
CATAGTATCGATACCTTTCTTCTAGTATCG
Found at i:10290718 original size:741 final size:738
Alignment explanation
Indices: 10289387--10291639 Score: 3491
Period size: 741 Copynumber: 3.1 Consensus size: 738
10289377 GGATTTCAAG
*
10289387 GTATCGATACCATTTAGGCATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* * *
10289452 TCTATTTTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCTATCTGGATGCCAAGG
66 TCTATTCTATGGTATCA-GTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGG
* *
10289516 TATCAATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATACACAGTTAGGCATTTATCTTTC
130 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
*
10289581 ATTTTAAAACAGTTATTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
195 ATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
* * *
10289646 TATCATATAAGGTAAAACATATATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCATC
260 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTAAGTCTCCCTC
*
10289711 AACCCATATAATTACATTATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAA
325 AACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAA
10289776 CTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATT
390 CTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATT
* *
10289841 TAGTACAGATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATAATGAAAAG
455 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATAATAAAAAG
* *
10289906 TACTAATACTATTAATTTCTATAACAACTTCAACATATCTTATAATTCCTGGCTCAATAGTATCC
520 TACTAATACTTTTAATTTCTATAACAACTTCAACATATCTTATAATTCCTGGCTCAATAGTATCG
10289971 GTACCCATACTATGATATCGATACTTCTATACTTCTATACTACGATACCGATACTCCCTTTCAGT
585 GTACCCATACTATGATATCGATACTTCTATA-TTCTATACTACGATACC-ATACTCCCTTTCAGT
10290036 ATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGGTACTTC
648 ATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTA-C-GTACTTC
10290101 TATACTATGGTATCGATACTCCCTTTCA
711 TATACTATGGTATCGATACTCCCTTTCA
* *
10290129 GTATCGATACCATTTAGGCATTCTTGAGTCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
10290194 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGACACCATTTCTCAATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGT
10290259 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
10290324 TTTT-AAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
*
10290388 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTAAGTCTCCCTCA
*
10290453 ACCCATATAATTACAATATATGCACTAACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
10290518 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
* *
10290583 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATATTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATAATAAAAAGT
*
10290648 ACTAATACTTTTAATTTCTATAACAACTTCAACGTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACATATCTTATAATTCCTGGCTCAATAGTATCGG
10290713 TACCCATACTATGATATCGATA---C--T-TT-TATACTACGATACCAATACTCCCTTTCAGTAT
586 TACCCATACTATGATATCGATACTTCTATATTCTATACTACGATACC-ATACTCCCTTTCAGTAT
*
10290771 AGATACCATTTCGGTATTCTGGAATCC--A-TA--G-TA-------TC--G-A--TACTTCTATA
650 CGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTACGTACTTCTATA
10290818 CTATGGTATCGATACTCCCTTTCA
715 CTATGGTATCGATACTCCCTTTCA
10290842 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
10290907 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGT
*
10290972 ATCGATACCTTTCTCTTAGTATTGTTATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
10291037 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
*
10291102 ATCATATTAA-GTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTTAGTCTCCCTC
261 ATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTAAGTCTCCCTC
* * * * * *
10291166 AACCCATATAATTACAACATATAG-ACTCACCTGATATGCTGTAGTGACATCTAACTACTCAACA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACA
* * * *
10291230 ACTTTGTCCTTGCCTTTTTTCCTGCCTGACTCAA-GAGCTTGGTTATAATCTACATAAGCACCCA
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACT-AAGGAGCTTGGTTATAATCTACACAAGCACCCA
* * * *
10291294 TTTAGTTCACATACCATACAAATGTTAGTATATTATCTAAAATTTATACTTTAATAATACTAAAA
453 TTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATAATAAAA
* * * * *
10291359 AGTACTATTATTTTTAATTTCTATAACAACTTCAGCCTATCTTATAATTCCTGGCTCAATATTAT
518 AGTACTAATACTTTTAATTTCTATAACAACTTCAACATATCTTATAATTCCTGGCTCAATAGTAT
* * * * ** *
10291424 CGGTACCTATACAATGGTATCAATACTTCTATA--CT-TGGTAC--TA--ATACTCCCTTTTAGT
583 CGGTACCCATACTATGATATCGATACTTCTATATTCTATACTACGATACCATACTCCCTTTCAGT
* * * * * *
10291482 ATCGATACCATTTTGGAATTCTAGAATCCATGGTATCGATACCTTTCTCCTAGTACTGATACTTA
648 ATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTAC-G-TACTTC
* *
10291547 TATACTATGGTACCAATACTCCCTTTCA
711 TATACTATGGTATCGATACTCCCTTTCA
** **** * * * * * * *
10291575 GTATTAATACCATTTCTATATTCTGGATTCTAAGGTATTGATATCTTTCTCTTAGTATCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
10291640 CACATCAGTA
Statistics
Matches: 1399, Mismatches: 80, Indels: 73
0.90 0.05 0.05
Matches are distributed among these distances:
713 268 0.19
714 371 0.27
715 6 0.00
716 4 0.00
717 2 0.00
718 6 0.00
719 4 0.00
720 2 0.00
726 1 0.00
727 2 0.00
728 2 0.00
729 1 0.00
730 2 0.00
731 1 0.00
733 140 0.10
734 2 0.00
736 1 0.00
738 1 0.00
741 394 0.28
742 188 0.13
743 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (738 bp):
GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGT
ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTAAGTCTCCCTCA
ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATAATAAAAAGT
ACTAATACTTTTAATTTCTATAACAACTTCAACATATCTTATAATTCCTGGCTCAATAGTATCGG
TACCCATACTATGATATCGATACTTCTATATTCTATACTACGATACCATACTCCCTTTCAGTATC
GATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTACGTACTTCTATAC
TATGGTATCGATACTCCCTTTCA
Found at i:10290818 original size:75 final size:75
Alignment explanation
Indices: 10290727--10290885 Score: 237
Period size: 75 Copynumber: 2.1 Consensus size: 75
10290717 CATACTATGA
* * *
10290727 TATCGATACTTTTATACTACGATACCAATACTCCCTTTCAGTATAGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTACGATACCAATACTCCCTTTCAGTATAGATACCATTTAGGCATTCTG
10290792 GAATCCATAG
66 GAATCCATAG
* * * * *
10290802 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTACGATACCAATACTCCCTTTCAGTATAGATACCATTTAGGCATTCTG
*
10290867 GAATCCATGG
66 GAATCCATAG
10290877 TATCGATAC
1 TATCGATAC
10290886 CTTTCTCCTA
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.36
Consensus pattern (75 bp):
TATCGATACTTCTATACTACGATACCAATACTCCCTTTCAGTATAGATACCATTTAGGCATTCTG
GAATCCATAG
Found at i:10290917 original size:95 final size:94
Alignment explanation
Indices: 10290799--10290992 Score: 291
Period size: 95 Copynumber: 2.1 Consensus size: 94
10290789 CTGGAATCCA
* * *
10290799 TAGTATCGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTATCGATACCATTTAGGCAT
1 TAGTACCGATACTTCTATACTATGGTATCAG-TACTCCCTTTCAGTATCGATACCATTT-CGCAA
*
10290863 TCTGGAATCCATGGTATCGATACCTTTCTCC
64 TCTGGAATCCAAGGTATCGATACCTTTCTCC
* *
10290894 TAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATC
1 TAGTACCGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCGCAATC
* *
10290959 TGGATTCCAAGGTATCGATACCTTTCTCT
66 TGGAATCCAAGGTATCGATACCTTTCTCC
10290988 TAGTA
1 TAGTA
10290993 TTGTTATCTT
Statistics
Matches: 90, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
94 35 0.39
95 54 0.60
96 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (94 bp):
TAGTACCGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCGCAATC
TGGAATCCAAGGTATCGATACCTTTCTCC
Found at i:10291492 original size:713 final size:713
Alignment explanation
Indices: 10290086--10291523 Score: 2434
Period size: 714 Copynumber: 2.0 Consensus size: 713
10290076 ACCTTTCTTC
*
10290086 TAGTATCGGTACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATT
1 TAGTATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATT
* *
10290151 CTTGAGTCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACT
66 CTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACT
10290216 CCCTTTCAGTATCGACACCATTTCTCAATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTAT
131 CCCTTTCAGTATCGACACCATTTCTCAATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTAT
10290281 TGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAACAGTTCTTAAACTAA
196 TGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAACAGTTCTTAAACTAA
10290346 AAATTATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACAT
261 AAATTATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACAT
*
10290411 TAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGC
326 TAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAACATATGC
* * *
10290476 ACTAACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTAC
391 ACTAACCTAATATACTGTAGTGACATCCAACTACTCAACAACTTTGTCCTTGCCCTTTTTCCTAC
10290541 CTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTT
456 CTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTT
* * * *
10290606 AGTATATTATCTAACATTTATACTTTAGTAATATTCAAAAGTACTAATACTTTTAATTTCTATAA
521 AGTATATTATCTAAAATTTATACTTTAATAATACTAAAAAGTACTAATACTTTTAATTTCTATAA
* * *
10290671 CAACTTCAACGTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATAC
586 CAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACAATGATATCAATAC
* * *
10290736 TTTTATACTACGATACCAATACTCCCTTTCAGTATAGATACCATTTCGGTATTCTGGAATCCA
651 TTCTATACTACGATACCAATACTCCCTTTCAGTATAGATACCATTTCGGAATTCTAGAATCCA
10290799 TAGTATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATT
1 TAGTATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATT
10290864 CTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACT
66 CTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACT
*
10290929 CCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTAT
131 CCCTTTCAGTATCGACACCATTTCTCAATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTAT
*
10290994 TGTTATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTA
196 TGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTT-AAACAGTTCTTAAACTA
10291059 AAAATTATTCATAATATCAATTCCACACACATTATAAACATATATCATATTAA-GTAAAACATAC
260 AAAATTATTCATAATATCAATTCCACACACATTATAAACATATATCATA-TAAGGTAAAACATAC
* *
10291123 ATTAATTTAAACATTTGAGGTGGACTTATTGTTAGTCTCCCTCAACCCATATAATTACAACATAT
324 ATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAACATAT
* * * * *
10291188 AG-ACTCACCTGATATGCTGTAGTGACATCTAACTACTCAACAACTTTGTCCTTGCCTTTTTTCC
389 -GCACTAACCTAATATACTGTAGTGACATCCAACTACTCAACAACTTTGTCCTTGCCCTTTTTCC
* * *
10291252 TGCCTGACTCAA-GAGCTTGGTTATAATCTACATAAGCACCCATTTAGTTCACATACCATACAAA
453 TACCTGACT-AAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAA
* *
10291316 TGTTAGTATATTATCTAAAATTTATACTTTAATAATACTAAAAAGTACTATTATTTTTAATTTCT
517 TGTTAGTATATTATCTAAAATTTATACTTTAATAATACTAAAAAGTACTAATACTTTTAATTTCT
* * * *
10291381 ATAACAACTTCAGCCTATCTTATAATTCCTGGCTCAATATTATCGGTACCTATACAATGGTATCA
582 ATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACAATGATATCA
* * * * * *
10291446 ATACTTCTATACT-TGGTACTAATACTCCCTTTTAGTATCGATACCATTTTGGAATTCTAGAATC
647 ATACTTCTATACTACGATACCAATACTCCCTTTCAGTATAGATACCATTTCGGAATTCTAGAATC
10291510 CA
712 CA
*
10291512 TGGTATCGATAC
1 TAGTATCGATAC
10291524 CTTTCTCCTA
Statistics
Matches: 679, Mismatches: 42, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
713 293 0.43
714 380 0.56
715 6 0.01
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (713 bp):
TAGTATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATT
CTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACT
CCCTTTCAGTATCGACACCATTTCTCAATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTAT
TGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAACAGTTCTTAAACTAA
AAATTATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACAT
TAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAACATATGC
ACTAACCTAATATACTGTAGTGACATCCAACTACTCAACAACTTTGTCCTTGCCCTTTTTCCTAC
CTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTT
AGTATATTATCTAAAATTTATACTTTAATAATACTAAAAAGTACTAATACTTTTAATTTCTATAA
CAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACAATGATATCAATAC
TTCTATACTACGATACCAATACTCCCTTTCAGTATAGATACCATTTCGGAATTCTAGAATCCA
Found at i:10291598 original size:95 final size:93
Alignment explanation
Indices: 10291440--10291639 Score: 224
Period size: 95 Copynumber: 2.1 Consensus size: 93
10291430 CTATACAATG
* * * * *
10291440 GTATCAATACTTCTATACTTGGTACTAATACTCCCTTTTAGTATCGATACCATTTTGGAATTCTA
1 GTATCGATACTTATATACTTGGTACCAATACTCCCTTTCAGTATCAATACCATTTT-GAATTCTA
*
10291505 GAATCCATGGTATCGATACCTTTCTCCTA
65 GAATCCAAGGTATCGATACCTTTCTCCTA
*
10291534 GTA-CTGATACTTATATACTATGGTACCAATACTCCCTTTCAGTATTAATACCATTTCT-ATATT
1 GTATC-GATACTTATATACT-TGGTACCAATACTCCCTTTCAGTATCAATACCATTT-TGA-ATT
* * * * * *
10291597 CTGGATTCTAAGGTATTGATATCTTTCTCTTA
62 CTAGAATCCAAGGTATCGATACCTTTCTCCTA
10291629 GTATCGATACT
1 GTATCGATACT
10291640 CACATCAGTA
Statistics
Matches: 88, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
93 1 0.01
94 16 0.18
95 69 0.78
96 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (93 bp):
GTATCGATACTTATATACTTGGTACCAATACTCCCTTTCAGTATCAATACCATTTTGAATTCTAG
AATCCAAGGTATCGATACCTTTCTCCTA
Found at i:10291669 original size:20 final size:18
Alignment explanation
Indices: 10291626--10291680 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 18
10291616 TATCTTTCTC
10291626 TTAGTATCGATACTCACA
1 TTAGTATCGATACTCACA
* *
10291644 TCAGTATCGATACAATTACA
1 TTAGTATCGATAC--TCACA
*
10291664 TTAGTATCAATA-TCACA
1 TTAGTATCGATACTCACA
10291681 CACCTGATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
17 4 0.13
18 12 0.40
20 14 0.47
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (18 bp):
TTAGTATCGATACTCACA
Found at i:10296000 original size:79 final size:79
Alignment explanation
Indices: 10295908--10296078 Score: 234
Period size: 79 Copynumber: 2.2 Consensus size: 79
10295898 TTCCAAATAA
* * * *
10295908 ATTATACTTTTATGTTGATAATGCAACCATATACATTTCAGCTATGGCATTCTTTCATGCCAATA
1 ATTATTCTTTTATGTTGACAATGCAACCATATACATTTCAGCTATGACATCCTTTCATGCCAATA
* * * **
10295973 ATGCACTCATATGC
66 ATACACCCAAAACC
***
10295987 ATTATTCTTTTATGTTGACAATGTGCCCATATACATTTCAGCTATGACATCCTTTCATGCCAATA
1 ATTATTCTTTTATGTTGACAATGCAACCATATACATTTCAGCTATGACATCCTTTCATGCCAATA
10296052 ATACACCCAAAACC
66 ATACACCCAAAACC
10296066 ATTATTCTTTTAT
1 ATTATTCTTTTAT
10296079 TTCATTCGTT
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (79 bp):
ATTATTCTTTTATGTTGACAATGCAACCATATACATTTCAGCTATGACATCCTTTCATGCCAATA
ATACACCCAAAACC
Found at i:10302914 original size:78 final size:79
Alignment explanation
Indices: 10302769--10303094 Score: 444
Period size: 78 Copynumber: 4.2 Consensus size: 79
10302759 ATCCAAATAA
* * ** * * *
10302769 ATTATACTTTTATGCTGATAA--TACACCATATGTATTTCAGCGAAGGCATCCTCTCATGCCAAT
1 ATTATTCTTTTATGCTGACAATGTAC-CCATATACATTTCAGCTATGGCATCCTTTCATGCCAAT
10302832 AATGCACCCATATGC
65 AATGCACCCATATGC
* * * * *
10302847 ATTATTTTTTTATGCTGACTATGTACCCATATACATTTCAGCTATGACATCCTTTCTTGCTAA-A
1 ATTATTCTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGGCATCCTTTCATGCCAATA
10302911 ATGCACCCATATGC
66 ATGCACCCATATGC
* *
10302925 ATTATTCTTTTATGCTAACAATGTACCCATATACATTTCAGCTATGGCATCATTTCATGCCAATA
1 ATTATTCTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGGCATCCTTTCATGCCAATA
*
10302990 ATGCACCCATGTGC
66 ATGCACCCATATGC
* * * *
10303004 ATTATTCTTTTATGCGGACAATGTACCCATATACATTTCAGCTA-GGCTTCCGTTAATGCCAATA
1 ATTATTCTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGGCATCCTTTCATGCCAATA
10303068 ATGCACCCATATGC
66 ATGCACCCATATGC
10303082 ATTATTCTTTTAT
1 ATTATTCTTTTAT
10303095 TTCATTTGTT
Statistics
Matches: 218, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
78 130 0.60
79 85 0.39
80 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.37
Consensus pattern (79 bp):
ATTATTCTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGGCATCCTTTCATGCCAATA
ATGCACCCATATGC
Found at i:10303080 original size:157 final size:157
Alignment explanation
Indices: 10302802--10303094 Score: 444
Period size: 157 Copynumber: 1.9 Consensus size: 157
10302792 CACCATATGT
* * * *
10302802 ATTTCAGCGAAGGCATCCTCTCATGCCAATAATGCACCCATATGCATTATTTTTTTATGCTGACT
1 ATTTCAGCGAAGGCATCATCTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCGGACA
* ** *
10302867 ATGTACCCATATACATTTCAGCTATGACATCCTTTCTTGCTAAAATGCACCCATATGCATTATTC
66 ATGTACCCATATACATTTCAGCTATGACATCCGTTAATGCCAAAATGCACCCATATGCATTATTC
10302932 TTTTATGCTAACAATGTACCCATATAC
131 TTTTATGCTAACAATGTACCCATATAC
* * * *
10302959 ATTTCAGCTATGGCATCATTTCATGCCAATAATGCACCCATGTGCATTATTCTTTTATGCGGACA
1 ATTTCAGCGAAGGCATCATCTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCGGACA
* *
10303024 ATGTACCCATATACATTTCAGCTA-GGCTTCCGTTAATGCCAATAATGCACCCATATGCATTATT
66 ATGTACCCATATACATTTCAGCTATGACATCCGTTAATGCCAA-AATGCACCCATATGCATTATT
10303088 CTTTTAT
130 CTTTTAT
10303095 TTCATTTGTT
Statistics
Matches: 121, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
156 12 0.10
157 109 0.90
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (157 bp):
ATTTCAGCGAAGGCATCATCTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCGGACA
ATGTACCCATATACATTTCAGCTATGACATCCGTTAATGCCAAAATGCACCCATATGCATTATTC
TTTTATGCTAACAATGTACCCATATAC
Found at i:10310003 original size:79 final size:79
Alignment explanation
Indices: 10309801--10310128 Score: 451
Period size: 79 Copynumber: 4.2 Consensus size: 79
10309791 TTCCAAATAA
* * * ** * * * * **
10309801 ATTATACTTTTATGTTGATAATACACCCATATGTATTTCAACGAGGGCATCTTTTCATGAAAATA
1 ATTATTCTTTTATGCTGACAATGTACCCATATATATTTCAACTATGGCATCCTTTCATGCCAATA
10309866 ATGCACCCATATGC
66 ATGCACCCATATGC
* * *
10309880 ATTATT-TTTTATGCTAACAATGTACCCATATAAATTTCAGCTATGGCATCCTTTCATGCCAATA
1 ATTATTCTTTTATGCTGACAATGTACCCATATATATTTCAACTATGGCATCCTTTCATGCCAATA
10309944 ATGCACCCATATGC
66 ATGCACCCATATGC
* * *
10309958 ATTATTCTTTTATGCTGACAATGTACCCATATATATTTCAGCTATGACATCATTTCATGCCAATA
1 ATTATTCTTTTATGCTGACAATGTACCCATATATATTTCAACTATGGCATCCTTTCATGCCAATA
*
10310023 ATGCACCCATATTC
66 ATGCACCCATATGC
* * * *
10310037 ATTATTCTTTTATGTTGACAATGTACCCATATATATTTCAACTATGGCATCCTTTAATGTCATTA
1 ATTATTCTTTTATGCTGACAATGTACCCATATATATTTCAACTATGGCATCCTTTCATGCCAATA
10310102 ATGCACCCATATGC
66 ATGCACCCATATGC
10310116 ATTATTCTTTTAT
1 ATTATTCTTTTAT
10310129 TTCATTCGTT
Statistics
Matches: 221, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
78 65 0.29
79 156 0.71
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (79 bp):
ATTATTCTTTTATGCTGACAATGTACCCATATATATTTCAACTATGGCATCCTTTCATGCCAATA
ATGCACCCATATGC
Found at i:10310797 original size:20 final size:21
Alignment explanation
Indices: 10310753--10310808 Score: 80
Period size: 20 Copynumber: 2.7 Consensus size: 21
10310743 TCTATACCTT
10310753 TTCAATGGTATCGATACTGCA
1 TTCAATGGTATCGATACTGCA
10310774 -TCAATGGTATCGATACTG-A
1 TTCAATGGTATCGATACTGCA
*
10310793 TTCAATCAGTATCGAT
1 TTCAAT-GGTATCGAT
10310809 GCTACCCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 1 0.03
20 23 0.72
21 8 0.25
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (21 bp):
TTCAATGGTATCGATACTGCA
Found at i:10313932 original size:22 final size:22
Alignment explanation
Indices: 10313898--10313939 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
10313888 ACATTGTTAA
*
10313898 GCATCTAGTCTTTCATCTAAAG
1 GCATCTAGCCTTTCATCTAAAG
* *
10313920 GCATTTAGCCTTTCCTCTAA
1 GCATCTAGCCTTTCATCTAA
10313940 CTTGAATGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (22 bp):
GCATCTAGCCTTTCATCTAAAG
Found at i:10314474 original size:81 final size:81
Alignment explanation
Indices: 10313916--10314477 Score: 737
Period size: 81 Copynumber: 6.9 Consensus size: 81
10313906 TCTTTCATCT
* * * * * *
10313916 AAAGGCATTTAGCCTTTCCTCTAACTTGAATGATTGACACATTTCTACCAAATGCACAACTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAGCTAGGC
*
10313981 ATTTAATATTTTACTC
66 ATTTAATCTTTTACTC
* * * * * *
10313997 AAAGGTATTTAGCCTCTCATTTAACTTGCATGATTCGAACCTTTCTGCCAAATGCATAGCTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAGCTAGGC
*
10314062 ATTTAATATTTTACTC
66 ATTTAATCTTTTACTC
** * * * *
10314078 AAAAACAATTAGCCTTTCATCTGACTTGCATGATTGGCACCTTTCTTCAAAATGCACAGCTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAGCTAGGC
* *
10314143 ATATAATATTTTACTC
66 ATTTAATCTTTTACTC
* * * * * * * *
10314159 CAAGGCATTTAGCCTTTCATTTACCTTGCATGATTGTCATCTTTTTTCCAAATGCATAGCTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAGCTAGGC
*
10314224 ATTTAATCATTTACTC
66 ATTTAATCTTTTACTC
* * * *
10314240 AAATGCATTTAGCCTTTCATCTAACTTGCATTATTGGCACATTTCTGCCAAATTCACAGCTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAGCTAGGC
*
10314305 ATATAATCTTTTACTC
66 ATTTAATCTTTTACTC
* * * *
10314321 AAAGACATTTAGACTTTCATCTAACTTGCATGATTGGAACCTTTCTGCCAAATGCACAACTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAGCTAGGC
10314386 ATTTAATCTTTTACTC
66 ATTTAATCTTTTACTC
* * *
10314402 AAAGGCATTTATCCTTTCATCTAACTTGCATGATTGTCACTTTTCTGCCAAATGCACAGCTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAGCTAGGC
10314467 ATTTAATCTTT
66 ATTTAATCTTT
10314478 CATTTTAAAA
Statistics
Matches: 411, Mismatches: 70, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 411 1.00
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.36
Consensus pattern (81 bp):
AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAGCTAGGC
ATTTAATCTTTTACTC
Found at i:10315055 original size:95 final size:95
Alignment explanation
Indices: 10314880--10315074 Score: 241
Period size: 95 Copynumber: 2.1 Consensus size: 95
10314870 ACCCATACTA
* * * * * **
10314880 TAGTATCGATACTTCTATATTATGGTACTGATACTCCCTTTTAGTATCGATACTATTTTGGCATT
1 TAGTACCGATACTTCTATATTATAGTACCGATACTCCCTTTCAGTATCGATACAATTTTGAAATT
* *
10314945 CTGGAATCCATGGTATCGATACCTTTCTCC
66 ATGGAATCCAAGGTATCGATACCTTTCTCC
10314975 TAGTACCGATACTTCTAT-TCTATAGTACCGATACTCCCTTTCAGTATCGATACAATTTCT-AAA
1 TAGTACCGATACTTCTATAT-TATAGTACCGATACTCCCTTTCAGTATCGATACAATTT-TGAAA
** * *
10315038 TTATGGTTTCCAAGGTATCGATACGTTTCTCT
64 TTATGGAATCCAAGGTATCGATACCTTTCTCC
10315070 TAGTA
1 TAGTA
10315075 TCAGTATTGT
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
94 1 0.01
95 83 0.98
96 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (95 bp):
TAGTACCGATACTTCTATATTATAGTACCGATACTCCCTTTCAGTATCGATACAATTTTGAAATT
ATGGAATCCAAGGTATCGATACCTTTCTCC
Found at i:10322167 original size:81 final size:81
Alignment explanation
Indices: 10322027--10322605 Score: 736
Period size: 81 Copynumber: 7.2 Consensus size: 81
10322017 ACACTATTAA
* * * *
10322027 GCATTTAGT-TTTTCCTCTAAAGGCATTTA-CCATTTCCTCTAACTTGCATGATTGACACCTTTA
1 GCATTTAATCTTTTACTC-AAAGGCATTTAGCC-TTTCATCTAACTTGCATGATTGACACCTTTC
*
10322090 TGCCAAATGCACAACTAG
64 TGCCAAATGCACAGCTAG
* * * * *
10322108 ACATTTAATCTTTTACTTAAAGGCATTTAGCCTCTT-ATCTAACTTGCATGAGTGGCACCTTCCT
1 GCATTTAATCTTTTACTCAAAGGCATTTAGCCT-TTCATCTAACTTGCATGATTGACACCTTTCT
* * *
10322172 GTCGAATTCACAGCTAG
65 GCCAAATGCACAGCTAG
* * *
10322189 GCATTTAATATTTTTCTCAAAGGCATTTAGTCTTTCATCTAACTTGCATGATTGACACCTTTCTG
1 GCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGACACCTTTCTG
10322254 CCAAATGCACAGCTAG
66 CCAAATGCACAGCTAG
* * * * *
10322270 GCATATAATCTTTTAGTCAAAGGCATTTAGTCTTTAATCTAACTTGCATGATTGACACCTTTCTT
1 GCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGACACCTTTCTG
* *
10322335 CCAAATACACAGCTTG
66 CCAAATGCACAGCTAG
* * * *
10322351 GCATCTAATGTTTTACTCAAAGGCATTTAGCCTTTCATCTAATTTGCATGATTGACACATTTCT-
1 GCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGACACCTTTCTG
*
10322415 CCAAATGCATAGCTAG
66 CCAAATGCACAGCTAG
* * * * * *
10322431 GCATATAATCTTTTACTTAAATGTATTTAGCCTTTCATCTAACTTGCATGATTGGCACATTTCTG
1 GCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGACACCTTTCTG
* *
10322496 CCAAATTCACAACTAG
66 CCAAATGCACAGCTAG
* *
10322512 GCATTTAATCTTTTACTCAAAGGCATTTAGTCTTTCATCTACCTTGCATGATT-ATCACCTTTCT
1 GCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGA-CACCTTTCT
*
10322576 GCCAAATGCACAGCTAT
65 GCCAAATGCACAGCTAG
10322593 GCATTTAATCTTT
1 GCATTTAATCTTT
10322606 CAATTTAGTA
Statistics
Matches: 429, Mismatches: 63, Indels: 12
0.85 0.12 0.02
Matches are distributed among these distances:
80 72 0.17
81 347 0.81
82 10 0.02
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (81 bp):
GCATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGACACCTTTCTG
CCAAATGCACAGCTAG
Found at i:10325913 original size:20 final size:23
Alignment explanation
Indices: 10325888--10325943 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 23
10325878 TAAAAGGGCT
10325888 AGTATCGATACTTTA-GTT-T-G
1 AGTATCGATACTTTATGTTCTAG
*
10325908 AGTATCTATAC-TTATGTTCTAG
1 AGTATCGATACTTTATGTTCTAG
*
10325930 GGTATCGATACTTT
1 AGTATCGATACTTT
10325944 CTTCAGTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 3 0.10
20 13 0.45
21 1 0.03
22 10 0.34
23 2 0.07
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.45
Consensus pattern (23 bp):
AGTATCGATACTTTATGTTCTAG
Found at i:10328494 original size:23 final size:23
Alignment explanation
Indices: 10328461--10328506 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
10328451 TTGATCACAT
10328461 TGTGTGAGTGCTATAAATTGAAC
1 TGTGTGAGTGCTATAAATTGAAC
*
10328484 TGTGTGGGTGCTATAAATTGAAC
1 TGTGTGAGTGCTATAAATTGAAC
10328507 GCAAAATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.28, T:0.35
Consensus pattern (23 bp):
TGTGTGAGTGCTATAAATTGAAC
Found at i:10330097 original size:17 final size:17
Alignment explanation
Indices: 10330075--10330107 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
10330065 AAAAAGGCAC
10330075 AAAATATAGCATTTTTT
1 AAAATATAGCATTTTTT
10330092 AAAATATAGCATTTTT
1 AAAATATAGCATTTTT
10330108 GGGGTTATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (17 bp):
AAAATATAGCATTTTTT
Found at i:10332783 original size:45 final size:45
Alignment explanation
Indices: 10332746--10333203 Score: 607
Period size: 45 Copynumber: 10.2 Consensus size: 45
10332736 AAATGAATGA
* * *
10332746 ATAAATGAAATGCATAACAGTGCATTAATGGCATGAAAGCATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAAGGATGCC
* *
10332791 ATAAATGAAATGCATAACGGTGCAATAACGACATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAAGGATGCC
* *
10332836 ATAAATGAAATGCATTACGGTGCATTAACGACATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAAGGATGCC
* * *
10332881 ATAAATAAAATGCATAACGGTGCATTAATGACATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAAGGATGCC
* * * **
10332926 ATAATTGAAATACATAATGGTAAATTAACGGCATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAAGGATGCC
* * *
10332971 ATAAATTAAATGCAGAACGGTGCATTAATGGCATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAAGGATGCC
* *
10333016 ATAAATAAAATGCATAACGGTGCATTAACGGAATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAAGGATGCC
* * * *
10333061 ACAAATGAAATGCATAACGATGCATTAACGACATGAAAGGATTCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAAGGATGCC
* * * * *
10333106 ATAAATGAAATGC--GACGGTGCATTACCGGCATAAAATGATTCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAAGGATGCC
* *
10333149 ATAAATGAAATGCATAACGGTGCATTATA-AGCATGAAAGGATGCT
1 ATAAATGAAATGCATAACGGTGCATTA-ACGGCATGAAAGGATGCC
10333194 ATAAATGAAA
1 ATAAATGAAA
10333204 ATAAAGGATA
Statistics
Matches: 360, Mismatches: 50, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
43 37 0.10
45 323 0.90
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.22
Consensus pattern (45 bp):
ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAAGGATGCC
Found at i:10338802 original size:45 final size:45
Alignment explanation
Indices: 10338763--10339129 Score: 400
Period size: 45 Copynumber: 8.2 Consensus size: 45
10338753 AAATGAATGA
* * **
10338763 ATAAATGAAATGTATAACGCTGCATTAACAACATGAAATGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAATGATGCC
* * *
10338808 ATAAATGAAATCCATAATGGTGCATTAACGGCATAAAATGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAATGATGCC
* * * *
10338853 ATAAATGAAATGCATAATGGTGCAATAACGACATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAATGATGCC
* * * *
10338898 ATAAATAAAATGCATAACGGTGCATTAACTGCATTAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAATGATGCC
* *
10338943 ATAAATGAAATGCATAACGATGTATTAACGGCATGAAATGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAATGATGCC
* * *
10338988 ATAAATGAAATGCATAACGATGCATTAACGGCATGAAAGGATGAC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAATGATGCC
* * * * * *
10339033 ATAAATGATAT--ATAATGG-GCATTACCGACATGAAAGGATTCC
1 ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAATGATGCC
* ** * * * *
10339075 ATAAATGAAATACATAACACTGCATTATA-AGCATGAGAGGATGCT
1 ATAAATGAAATGCATAACGGTGCATTA-ACGGCATGAAATGATGCC
10339120 ATAAATGAAA
1 ATAAATGAAA
10339130 ATAAAGGATA
Statistics
Matches: 274, Mismatches: 44, Indels: 8
0.84 0.13 0.02
Matches are distributed among these distances:
42 30 0.11
43 5 0.02
44 4 0.01
45 235 0.86
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.23
Consensus pattern (45 bp):
ATAAATGAAATGCATAACGGTGCATTAACGGCATGAAATGATGCC
Found at i:10338880 original size:24 final size:24
Alignment explanation
Indices: 10338844--10338921 Score: 56
Period size: 24 Copynumber: 3.4 Consensus size: 24
10338834 AACGGCATAA
* *
10338844 AATGATGCCATAAATGAAATGCAT
1 AATGGTGCAATAAATGAAATGCAT
* *
10338868 AATGGTGCAAT-AACGACATG-A-
1 AATGGTGCAATAAATGAAATGCAT
* *
10338889 AA-GGATGCCATAAATAAAATGCAT
1 AATGG-TGCAATAAATGAAATGCAT
*
10338913 AACGGTGCA
1 AATGGTGCA
10338922 TTAACTGCAT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
20 2 0.05
21 7 0.17
22 7 0.17
23 8 0.20
24 14 0.35
25 2 0.05
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.21
Consensus pattern (24 bp):
AATGGTGCAATAAATGAAATGCAT
Found at i:10343466 original size:27 final size:27
Alignment explanation
Indices: 10343436--10343498 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 27
10343426 CAAAAGTTTC
10343436 ACCCCCACCCACAGA-AGATGAACTCAG
1 ACCCCCACCCACA-ATAGATGAACTCAG
10343463 ACCCCCACCCACAATAGATGAACTCAG
1 ACCCCCACCCACAATAGATGAACTCAG
*
10343490 ACACCCACC
1 ACCCCCACC
10343499 ACATTTCCCT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 1 0.03
27 33 0.97
ACGTcount: A:0.37, C:0.44, G:0.11, T:0.08
Consensus pattern (27 bp):
ACCCCCACCCACAATAGATGAACTCAG
Found at i:10345603 original size:17 final size:17
Alignment explanation
Indices: 10345583--10345620 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
10345573 CTTTTGACCC
*
10345583 GACCCGACCGGACCGTT
1 GACCCGACCCGACCGTT
10345600 GACCCGACCCGACCGTT
1 GACCCGACCCGACCGTT
10345617 GACC
1 GACC
10345621 GTTGACTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.18, C:0.45, G:0.26, T:0.11
Consensus pattern (17 bp):
GACCCGACCCGACCGTT
Found at i:10345614 original size:22 final size:22
Alignment explanation
Indices: 10345561--10345626 Score: 87
Period size: 22 Copynumber: 2.9 Consensus size: 22
10345551 GGACCGGTCT
* **
10345561 GACCCGACCCGACTTTTGACCC
1 GACCCGACCGGACCGTTGACCC
10345583 GACCCGACCGGACCGTTGACCC
1 GACCCGACCGGACCGTTGACCC
10345605 GACCCGACCGTTGACCGTTGAC
1 GACCCGACCG--GACCGTTGAC
10345627 TTTCTTTGAC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
22 29 0.74
24 10 0.26
ACGTcount: A:0.18, C:0.42, G:0.24, T:0.15
Consensus pattern (22 bp):
GACCCGACCGGACCGTTGACCC
Found at i:10352840 original size:9 final size:9
Alignment explanation
Indices: 10352808--10352867 Score: 66
Period size: 9 Copynumber: 6.3 Consensus size: 9
10352798 CTGCTGGAAA
10352808 ACCGGTTTG
1 ACCGGTTTG
*
10352817 ACCAGTTTTG
1 ACC-GGTTTG
10352827 AACCGGTTTG
1 -ACCGGTTTG
*
10352837 ACCGGTCTGG
1 ACCGGT-TTG
10352847 ACCGGTTTG
1 ACCGGTTTG
*
10352856 ACCGGTCTG
1 ACCGGTTTG
10352865 ACC
1 ACC
10352868 CGACCCGTCT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
9 22 0.51
10 18 0.42
11 3 0.07
ACGTcount: A:0.15, C:0.27, G:0.30, T:0.28
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:10352852 original size:19 final size:19
Alignment explanation
Indices: 10352807--10352865 Score: 82
Period size: 19 Copynumber: 3.1 Consensus size: 19
10352797 GCTGCTGGAA
* *
10352807 AACCGGTTTGACCAGTTTTG
1 AACCGGTTTGACC-GGTCTG
10352827 AACCGGTTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
*
10352846 GACCGGTTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
10352865 A
1 A
10352866 CCCGACCCGT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
19 22 0.63
20 13 0.37
ACGTcount: A:0.17, C:0.24, G:0.31, T:0.29
Consensus pattern (19 bp):
AACCGGTTTGACCGGTCTG
Done.