Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009175.1 Hibiscus syriacus cultivar Beakdansim tig00112738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10629029
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 51 of 51
Found at i:10552184 original size:18 final size:18
Alignment explanation
Indices: 10552158--10552193 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10552148 TCGAAAGGAC
*
10552158 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
10552176 TGAATTAAATAATAAGAT
1 TGAAGTAAATAATAAGAT
10552194 CGGATGGAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.31
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:10552309 original size:26 final size:26
Alignment explanation
Indices: 10552271--10552323 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10552261 TGACCCAAGA
*
10552271 ATATCACCAAGCTCAGAAATGATTGG
1 ATATCACCAAGCTCAGAAATGAATGG
* * *
10552297 ATATCATCGAGCTCTGAAATGAATGG
1 ATATCACCAAGCTCAGAAATGAATGG
10552323 A
1 A
10552324 ATAAAACTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.25
Consensus pattern (26 bp):
ATATCACCAAGCTCAGAAATGAATGG
Found at i:10553303 original size:23 final size:23
Alignment explanation
Indices: 10553277--10553359 Score: 96
Period size: 23 Copynumber: 3.6 Consensus size: 23
10553267 TCCGACTTGA
* * *
10553277 ATTCTGTTATGATCCTGACCTGG
1 ATTCTGATATGATCATGACATGG
*
10553300 ATTCTGATCTGAT-ATTGACATGG
1 ATTCTGATATGATCA-TGACATGG
*
10553323 ATTCTGATCTGATACATGACATGG
1 ATTCTGATATGAT-CATGACATGG
10553347 ATTCTGATATGAT
1 ATTCTGATATGAT
10553360 ACTTGACTTG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 31 0.60
24 20 0.38
25 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (23 bp):
ATTCTGATATGATCATGACATGG
Found at i:10553347 original size:24 final size:24
Alignment explanation
Indices: 10553292--10553366 Score: 116
Period size: 24 Copynumber: 3.2 Consensus size: 24
10553282 GTTATGATCC
*
10553292 TGACCTGGATTCTGATCTGATA-T
1 TGACATGGATTCTGATCTGATACT
*
10553315 TGACATGGATTCTGATCTGATACA
1 TGACATGGATTCTGATCTGATACT
*
10553339 TGACATGGATTCTGATATGATACT
1 TGACATGGATTCTGATCTGATACT
10553363 TGAC
1 TGAC
10553367 TTGAATTATG
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
23 21 0.45
24 26 0.55
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (24 bp):
TGACATGGATTCTGATCTGATACT
Found at i:10555149 original size:13 final size:13
Alignment explanation
Indices: 10555133--10555157 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10555123 TAATTTATAT
10555133 TTCTTTTTTTTTC
1 TTCTTTTTTTTTC
10555146 TTCTTTTTTTTT
1 TTCTTTTTTTTT
10555158 ATACGGGGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTCTTTTTTTTTC
Found at i:10559437 original size:20 final size:20
Alignment explanation
Indices: 10559414--10559456 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
10559404 AATCCACCAC
*
10559414 ATGCAACTATATGCTCCTAA
1 ATGCAACTAAATGCTCCTAA
* *
10559434 ATGCATCTAAATGGTCCTAA
1 ATGCAACTAAATGCTCCTAA
10559454 ATG
1 ATG
10559457 GGCTCTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (20 bp):
ATGCAACTAAATGCTCCTAA
Found at i:10571708 original size:20 final size:19
Alignment explanation
Indices: 10571655--10571708 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 19
10571645 CGATTCAAGC
*
10571655 GGTATCGATACCAAGAGGG
1 GGTATCGATACCATGAGGG
*
10571674 GAGTATCGATACCATGAGGAT
1 G-GTATCGATACCATGAGG-G
10571695 GGTATCGATACCAT
1 GGTATCGATACCAT
10571709 TTGATCACAG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
19 1 0.03
20 29 0.94
21 1 0.03
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.22
Consensus pattern (19 bp):
GGTATCGATACCATGAGGG
Found at i:10572698 original size:68 final size:68
Alignment explanation
Indices: 10572505--10572758 Score: 366
Period size: 68 Copynumber: 3.7 Consensus size: 68
10572495 ATAAATAGTT
* * *
10572505 TAGCTGTGCACTTGACATAAATGTGTCAATTATGTCAGTTAGATGAAAGACTAAGT-TCTTTTGA
1 TAGCTGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGACTAAGTGTC-TTTGA
*
10572569 GGTC
65 GGCC
* *
10572573 TAGCTGTGCATTTGAAAAACAATGTGTCAATTATGCCAGTTAGATGAAAGACTAAGTGTCTTTGA
1 TAGCTGTGCATTTGACAGA-AATGTGTCAATTATGCCAGTTAGATGAAAGACTAAGTGTCTTTGA
10572638 GGCC
65 GGCC
* * * *
10572642 TAGCTGTGCATTTGACAGAAATGTGTCAATTATGTCAGTTAGATGCAAGCCTAAGTGCCTTTGAG
1 TAGCTGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGACTAAGTGTCTTTGAG
10572707 GCC
66 GCC
* * *
10572710 TAGCTGTGCATTTAACAGAAAGGTGTCAATTATGCCAGTTAAATGAAAG
1 TAGCTGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAG
10572759 TTAAAAACCG
Statistics
Matches: 168, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
68 105 0.62
69 61 0.36
70 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (68 bp):
TAGCTGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGACTAAGTGTCTTTGAG
GCC
Found at i:10572947 original size:154 final size:156
Alignment explanation
Indices: 10572706--10573101 Score: 514
Period size: 162 Copynumber: 2.5 Consensus size: 156
10572696 GTGCCTTTGA
** * * * *
10572706 GGCCTAGCTGTGCATTTAACAGAAAGGTGTCAATTATGCCAGTTAAATGAA-AGTTAAAAACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAATTAGATGAACGGTTAAAGA-CGT
*
10572770 TGAGTAAAAGATAAATGGCCTAGTTGTGAATTTGGCA-AAA-AAGTTT-CAATTTAGATGAATGG
65 TGAGTAAAAGATAAATGGCCTAGTTGTGAATTTGGCATAAATAAGTTTGCAAGTTAGATGAATGG
*
10572832 TTAAAGACCT-TTGAGTTAAAGATAAAT
130 TTAAAGA-CTGTTGAGTAAAAGATAAAT
* * * *
10572859 GGCCTAGTTGTGTATTTGGTAGAAAGGTGTCAATTATGCCATTTAGATGAACGGTTAAAGATCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAATTAGATGAACGGTTAAAGA-CGT
* * *
10572924 TGAGTAAAAGATAAATGGCCTAGTTGTGCATTTGGCATAAATGTGTTAATTTTGCCAGTTAGATG
65 TGAGTAAAAGATAAATGGCCTAGTTGTGAATTTGGCATAAA-----TAAGTTTGCAAGTTAGATG
* *
10572989 AATGGTTAAAGATTGTTTAGTAAAAGATAAAT
125 AATGGTTAAAGACTGTTGAGTAAAAGATAAAT
*
10573021 GGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAATTAGATGAACGGTTAAAGACTGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAATTAGATGAACGGTTAAAGAC-GT
10573086 TGAGTAAAAGATAAAT
65 TGAGTAAAAGATAAAT
10573102 AGAATTATAA
Statistics
Matches: 210, Mismatches: 22, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
153 44 0.21
154 46 0.22
155 3 0.01
161 7 0.03
162 110 0.52
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.31
Consensus pattern (156 bp):
GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAATTAGATGAACGGTTAAAGACGTT
GAGTAAAAGATAAATGGCCTAGTTGTGAATTTGGCATAAATAAGTTTGCAAGTTAGATGAATGGT
TAAAGACTGTTGAGTAAAAGATAAAT
Found at i:10572957 original size:81 final size:81
Alignment explanation
Indices: 10572818--10573101 Score: 408
Period size: 81 Copynumber: 3.5 Consensus size: 81
10572808 AAAAGTTTCA
* * * * * *
10572818 ATTTAGATGAATGGTTAAAGACCTTTGAGTTAAAGATAAATGGCCTAGTTGTGTATTTGGTAGAA
1 ATTTAGATGAACGGTTAAAGATCGTTGAGTAAAAGATAAATGGCCTAGTTGTGCATTTGGCAGAA
*
10572883 AGGTGTCAATTATGCC
66 ATGTGTCAATTATGCC
*
10572899 ATTTAGATGAACGGTTAAAGATCGTTGAGTAAAAGATAAATGGCCTAGTTGTGCATTTGGCATAA
1 ATTTAGATGAACGGTTAAAGATCGTTGAGTAAAAGATAAATGGCCTAGTTGTGCATTTGGCAGAA
* *
10572964 ATGTGTTAATTTTGCC
66 ATGTGTCAATTATGCC
* * * * *
10572980 AGTTAGATGAATGGTTAAAGATTGTTTAGTAAAAGATAAATGGCCTAGCTGTGCATTTGGCAGAA
1 ATTTAGATGAACGGTTAAAGATCGTTGAGTAAAAGATAAATGGCCTAGTTGTGCATTTGGCAGAA
10573045 ATGTGTCAATTATGCC
66 ATGTGTCAATTATGCC
*
10573061 AATTAGATGAACGGTTAAAGA-CTGTTGAGTAAAAGATAAAT
1 ATTTAGATGAACGGTTAAAGATC-GTTGAGTAAAAGATAAAT
10573102 AGAATTATAA
Statistics
Matches: 180, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
81 180 1.00
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.33
Consensus pattern (81 bp):
ATTTAGATGAACGGTTAAAGATCGTTGAGTAAAAGATAAATGGCCTAGTTGTGCATTTGGCAGAA
ATGTGTCAATTATGCC
Found at i:10577721 original size:55 final size:55
Alignment explanation
Indices: 10577651--10577802 Score: 164
Period size: 55 Copynumber: 2.8 Consensus size: 55
10577641 AGTGTGGAAA
* * ** *
10577651 AAAATTGAGAAATTCATACTAAGTGTATGAATTTTCGTATGGGCACTTGGTGTGC
1 AAAACTGAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACTACGTGTAC
* * * *
10577706 AAAACTGAGAAATTCATACTACGTGTTTTAATTTCCGTATGGACACTACGTGTAC
1 AAAACTGAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACTACGTGTAC
* * * *
10577761 -GAACTAATAAA-TCTATAATAAGTGTATGAATTTCCGTATGGG
1 AAAACTGAGAAATTC-ATACTAAGTGTATGAATTTCCGTATGGG
10577803 AAATATATGT
Statistics
Matches: 79, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
53 2 0.03
54 31 0.39
55 46 0.58
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.34
Consensus pattern (55 bp):
AAAACTGAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACTACGTGTAC
Found at i:10578097 original size:68 final size:68
Alignment explanation
Indices: 10578018--10578268 Score: 351
Period size: 68 Copynumber: 3.7 Consensus size: 68
10578008 ATAAATAGCA
* * * * * *
10578018 TAGCTGAGCATTTGATAGAAATGTGTCAATTATGCCAGATAAATGAAAGGCTCAGTGCCTTTGAG
1 TAGCTGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTACCTTTGAG
10578083 GCC
66 GCC
* * * ** *
10578086 TAGCTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGACTAAGTTTCTTTAAG
1 TAGCTGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTACCTTTGAG
10578151 GCC
66 GCC
* *
10578154 TAGCTGTGCATTTGACAG-AATGGTGTCAATTGTGCCAGTTAGATGAAAGGCTAAGTACGTTTGA
1 TAGCTGTGCATTTGACAGAAAT-GTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTACCTTTGA
10578218 GGCC
65 GGCC
*
10578222 TAGCTGTGCATTTGACAGAAATGTGTCAATTATGACAGTTAGATGAA
1 TAGCTGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAA
10578269 CGATTAAAGG
Statistics
Matches: 160, Mismatches: 21, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
67 2 0.01
68 155 0.97
69 3 0.02
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (68 bp):
TAGCTGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTACCTTTGAG
GCC
Found at i:10578262 original size:136 final size:136
Alignment explanation
Indices: 10578018--10578268 Score: 387
Period size: 136 Copynumber: 1.8 Consensus size: 136
10578008 ATAAATAGCA
* * *
10578018 TAGCTGAGCATTTGATAGAAATGTGTCAATTATGCCAGATAAATGAAAGGCTCAGTGCCTTTGAG
1 TAGCTGAGCATTTGACAGAAATGTGTCAATTATGCCAGATAAATGAAAGGCTAAGTACCTTTGAG
*
10578083 GCCTAGCTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGACTAAGTTTCTTT
66 GCCTAGCTGTGCATTTGACAAAAAGGTGTCAATTATGACAGTTAGATGAAAGACTAAGTTTCTTT
10578148 AAGGCC
131 AAGGCC
* * * * *
10578154 TAGCTGTGCATTTGACAG-AATGGTGTCAATTGTGCCAGTTAGATGAAAGGCTAAGTACGTTTGA
1 TAGCTGAGCATTTGACAGAAAT-GTGTCAATTATGCCAGATAAATGAAAGGCTAAGTACCTTTGA
* *
10578218 GGCCTAGCTGTGCATTTGACAGAAATGTGTCAATTATGACAGTTAGATGAA
65 GGCCTAGCTGTGCATTTGACAAAAAGGTGTCAATTATGACAGTTAGATGAA
10578269 CGATTAAAGG
Statistics
Matches: 103, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
135 3 0.03
136 100 0.97
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (136 bp):
TAGCTGAGCATTTGACAGAAATGTGTCAATTATGCCAGATAAATGAAAGGCTAAGTACCTTTGAG
GCCTAGCTGTGCATTTGACAAAAAGGTGTCAATTATGACAGTTAGATGAAAGACTAAGTTTCTTT
AAGGCC
Found at i:10578357 original size:81 final size:81
Alignment explanation
Indices: 10578220--10578378 Score: 264
Period size: 81 Copynumber: 2.0 Consensus size: 81
10578210 ACGTTTGAGG
* *
10578220 CCTAGCTGTGCATTTGACAGAAATGTGTCAATTATGACAGTTAGATGAACGATTAAAGGCCGTTG
1 CCTAGCTGTGCATTTGACAAAAATGTGTCAATTATGACAGTTAGATGAACGATTAAAGACCGTTG
10578285 AGTAAAAGATAAAAGA
66 AGTAAAAGATAAAAGA
* * * *
10578301 CCTAGCTGTGCATTTGGCAAAAATGTGTCAATTATGGCAGTTAGATGAATGGTTAAAGACCGTTG
1 CCTAGCTGTGCATTTGACAAAAATGTGTCAATTATGACAGTTAGATGAACGATTAAAGACCGTTG
10578366 AGTAAAAGATAAA
66 AGTAAAAGATAAA
10578379 TTGTAACCCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (81 bp):
CCTAGCTGTGCATTTGACAAAAATGTGTCAATTATGACAGTTAGATGAACGATTAAAGACCGTTG
AGTAAAAGATAAAAGA
Found at i:10579245 original size:43 final size:43
Alignment explanation
Indices: 10579170--10579261 Score: 157
Period size: 43 Copynumber: 2.1 Consensus size: 43
10579160 CCTCCAACCG
* *
10579170 AACACACCATAATGTGTAGGTTTCCCAGAACCATACACCCACC
1 AACACACCATAATGTGTAAGTTCCCCAGAACCATACACCCACC
*
10579213 AACACACCATAATGTGTAAGTTCCCCATAACCATACACCCACC
1 AACACACCATAATGTGTAAGTTCCCCAGAACCATACACCCACC
10579256 AACACA
1 AACACA
10579262 ACAAGTAAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.38, C:0.36, G:0.09, T:0.17
Consensus pattern (43 bp):
AACACACCATAATGTGTAAGTTCCCCAGAACCATACACCCACC
Found at i:10579393 original size:24 final size:24
Alignment explanation
Indices: 10579366--10579494 Score: 125
Period size: 24 Copynumber: 5.4 Consensus size: 24
10579356 TATATCAAAA
* * *
10579366 ATCAAAACATAATTCATGTCAAGT
1 ATCAAATCAGAATCCATGTCAAGT
* * * *
10579390 ATCATATAAAAATCCAGGTCAAGT
1 ATCAAATCAGAATCCATGTCAAGT
* *
10579414 ATCATATCAGAATCCAAGTCAAGT
1 ATCAAATCAGAATCCATGTCAAGT
* *
10579438 ATCAGATCAGAATCTATGTC-AGAT
1 ATCAAATCAGAATCCATGTCAAG-T
*
10579462 ATCATATCAGAATCCATGTCAAGT
1 ATCAAATCAGAATCCATGTCAAGT
*
10579486 ATCAGATCA
1 ATCAAATCA
10579495 AAATTCAAAT
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
23 2 0.02
24 84 0.95
25 2 0.02
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (24 bp):
ATCAAATCAGAATCCATGTCAAGT
Found at i:10579514 original size:72 final size:72
Alignment explanation
Indices: 10579381--10579516 Score: 168
Period size: 72 Copynumber: 1.9 Consensus size: 72
10579371 AACATAATTC
* * * *
10579381 ATGTCAAGTATCATATAAAAATCCAGGTCAAGTATCATATCAGAATCCAAGTCAAGTATCAGATC
1 ATGTCAAGTATCATATAAAAATCCAGGTCAAGTATCAGATCAAAATCCAAATCAAGAATCAGATC
10579446 AGAATCT
66 AGAATCT
* * * *
10579453 ATGTC-AGATATCATATCAGAATCCATGTCAAGTATCAGATCAAAATTCAAATCGAA-AATCAGA
1 ATGTCAAG-TATCATATAAAAATCCAGGTCAAGTATCAGATCAAAATCCAAATC-AAGAATCAGA
10579516 T
64 T
10579517 AAAATATTCA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
71 2 0.04
72 50 0.93
73 2 0.04
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (72 bp):
ATGTCAAGTATCATATAAAAATCCAGGTCAAGTATCAGATCAAAATCCAAATCAAGAATCAGATC
AGAATCT
Found at i:10581924 original size:13 final size:13
Alignment explanation
Indices: 10581906--10581930 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10581896 GTCAACGGTC
10581906 AACGGGTCGGGTA
1 AACGGGTCGGGTA
10581919 AACGGGTCGGGT
1 AACGGGTCGGGT
10581931 CGGGTCGGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.48, T:0.16
Consensus pattern (13 bp):
AACGGGTCGGGTA
Found at i:10582793 original size:2 final size:2
Alignment explanation
Indices: 10582786--10582860 Score: 150
Period size: 2 Copynumber: 37.5 Consensus size: 2
10582776 CCATCAGTTT
10582786 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10582828 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10582861 CTTTCATGTA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10584183 original size:43 final size:43
Alignment explanation
Indices: 10584113--10584203 Score: 155
Period size: 43 Copynumber: 2.1 Consensus size: 43
10584103 CCTCCAACCG
* *
10584113 AACACACCATAACGTGTAGGTTTCCCAGAACCATACACCCACC
1 AACACACCATAACGTGTAAGTTCCCCAGAACCATACACCCACC
*
10584156 AACACACCATAATGTGTAAGTTCCCCAGAACCATACACCCACC
1 AACACACCATAACGTGTAAGTTCCCCAGAACCATACACCCACC
10584199 AACAC
1 AACAC
10584204 TCCAAGTAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.37, C:0.37, G:0.10, T:0.15
Consensus pattern (43 bp):
AACACACCATAACGTGTAAGTTCCCCAGAACCATACACCCACC
Found at i:10584336 original size:24 final size:24
Alignment explanation
Indices: 10584323--10584437 Score: 151
Period size: 24 Copynumber: 4.8 Consensus size: 24
10584313 AAACATAATT
*
10584323 CATGTCAAGTATCATATCAAAATC
1 CATGTCAAGTATCAGATCAAAATC
*
10584347 CAGGTCAAGTATCAGATCAAAATC
1 CATGTCAAGTATCAGATCAAAATC
* *
10584371 CAAGTCAAGTATCAGATCAGAATC
1 CATGTCAAGTATCAGATCAAAATC
* * *
10584395 TATGTC-AGATATCATATCATAATC
1 CATGTCAAG-TATCAGATCAAAATC
10584419 CATGTCAAGTATCAGATCA
1 CATGTCAAGTATCAGATCA
10584438 GAATTCAAAT
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
23 2 0.03
24 75 0.95
25 2 0.03
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (24 bp):
CATGTCAAGTATCAGATCAAAATC
Found at i:10584457 original size:72 final size:72
Alignment explanation
Indices: 10584324--10584459 Score: 186
Period size: 72 Copynumber: 1.9 Consensus size: 72
10584314 AACATAATTC
* *
10584324 ATGTCAAGTATCATATCAAAATCCAGGTCAAGTATCAGATCAAAATCCAAGTCAAGTATCAGATC
1 ATGTCAAGTATCATATCAAAATCCAGGTCAAGTATCAGATCAAAATCCAAATCAAGAATCAGATC
10584389 AGAATCT
66 AGAATCT
* * * *
10584396 ATGTC-AGATATCATATCATAATCCATGTCAAGTATCAGATCAGAATTCAAATCGAA-AATCAGA
1 ATGTCAAG-TATCATATCAAAATCCAGGTCAAGTATCAGATCAAAATCCAAATC-AAGAATCAGA
10584459 T
64 T
10584460 AAAATATTCA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
71 2 0.04
72 52 0.93
73 2 0.04
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.26
Consensus pattern (72 bp):
ATGTCAAGTATCATATCAAAATCCAGGTCAAGTATCAGATCAAAATCCAAATCAAGAATCAGATC
AGAATCT
Found at i:10585260 original size:86 final size:88
Alignment explanation
Indices: 10585156--10585356 Score: 257
Period size: 92 Copynumber: 2.3 Consensus size: 88
10585146 TACATTTCAA
* * *
10585156 TCTTTCCTCCATTCGAACAAGAACATTTCACCATATATGCATTCATGC-A-ATGGTAAA-CGAAT
1 TCTTTCCTCTATTCGAACAAGAACATTTCACCACATATGCATTCATGCAATATGGCAAATCG-AT
10585218 TAAACAATTCAATAGGTATAAAAT
65 TAAACAATTCAATAGGTATAAAAT
* *
10585242 TCTTTCCTCTAGTT-GAACAAGAACTTTTCACCACATATGTATTCATGCAATATATATGGCAAAT
1 TCTTTCCTCTA-TTCGAACAAGAACATTTCACCACATATGCATTCATGC---A-ATATGGCAAAT
* *
10585306 TGATTAAACAATTCAATAGGTATAACAT
61 CGATTAAACAATTCAATAGGTATAAAAT
10585334 TCTTTCCTCTATTCGAACAAGAA
1 TCTTTCCTCTATTCGAACAAGAA
10585357 GTAAACACTC
Statistics
Matches: 99, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
86 41 0.41
87 2 0.02
91 3 0.03
92 52 0.53
93 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.33
Consensus pattern (88 bp):
TCTTTCCTCTATTCGAACAAGAACATTTCACCACATATGCATTCATGCAATATGGCAAATCGATT
AAACAATTCAATAGGTATAAAAT
Found at i:10586010 original size:41 final size:41
Alignment explanation
Indices: 10585850--10586125 Score: 270
Period size: 41 Copynumber: 6.7 Consensus size: 41
10585840 ACTCATTTCA
** * * * * *
10585850 ATTCAATCATGACAACATGCAATAGTTCATCATTCGA-TTCA
1 ATTCAATCATGGTAGCATGCAATAATTCACCATTCAACTT-G
* * *
10585891 ATTCAATCATGGTAACATGCAATAGTTCACCATTCAA-TTCA
1 ATTCAATCATGGTAGCATGCAATAATTCACCATTCAACTT-G
*
10585932 ATTCAATCAT-GTCAGCATGCAATACTTCACCATTCAACTTG
1 ATTCAATCATGGT-AGCATGCAATAATTCACCATTCAACTTG
*
10585973 ATTCAATCATGGTAGCATACAATAATTCACCATTCAACTTG
1 ATTCAATCATGGTAGCATGCAATAATTCACCATTCAACTTG
* * * * **
10586014 ATTCGATCCTGGTAACATGCAATAATTAACCATTTGACTTG
1 ATTCAATCATGGTAGCATGCAATAATTCACCATTCAACTTG
** * *
10586055 ATTTGATCATGGTAGCATACAATAATTCACCATTCACCTTG
1 ATTCAATCATGGTAGCATGCAATAATTCACCATTCAACTTG
* * * *
10586096 ATTCGATCATGGTAACATGCATTTATTCAC
1 ATTCAATCATGGTAGCATGCAATAATTCAC
10586126 AAACCAATTC
Statistics
Matches: 203, Mismatches: 29, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
40 2 0.01
41 197 0.97
42 4 0.02
ACGTcount: A:0.34, C:0.22, G:0.11, T:0.33
Consensus pattern (41 bp):
ATTCAATCATGGTAGCATGCAATAATTCACCATTCAACTTG
Found at i:10592652 original size:292 final size:292
Alignment explanation
Indices: 10592128--10592704 Score: 1075
Period size: 292 Copynumber: 2.0 Consensus size: 292
10592118 AATTCAAGTA
*
10592128 TCAGTACTGTTCTTGTAGTATAAGTAATACATGATTAAAAATATATTTTCGACTCGATTAAAATC
1 TCAGTACTGTTCTTGTAGTATAAGTAATACAGGATTAAAAATATATTTTCGACTCGATTAAAATC
10592193 CGAAACCCTTTGTAAAAACATTTGAAAATTAATTATAGTATATGACTTGAATTTTCAAAAGAGTA
66 CGAAACCCTTTGTAAAAACATTTGAAAATTAATTATAGTATATGACTTGAATTTTCAAAAGAGTA
*
10592258 AGGAGTTAAAATGGAGTTTTTGACCTTAAGAAGAATTTCTATATTCGAATGATTGAATCGAATAT
131 AGGAGTTAAAATGGAGTTTTTGACCTTAAGAAGAATTTCTATATTCGAACGATTGAATCGAATAT
10592323 GATTAGAAAATTGGATTAAAAGAAATATTAAAATTTCTTTTAAAACATTTAATTTTGGTATATCA
196 GATTAGAAAATTGGATTAAAAGAAATATTAAAATTTCTTTTAAAACATTTAATTTTGGTATATCA
* *
10592388 AAATTCCATAGCGTGTTTCAACAATGTCCCTT
261 AAATTCCAAAGCATGTTTCAACAATGTCCCTT
10592420 TCAGTACTGTTCTTGTAGTATAAGTAATACAGGATTAAAAAT-TGATTTTCGACTCGATTAAAAT
1 TCAGTACTGTTCTTGTAGTATAAGTAATACAGGATTAAAAATAT-ATTTTCGACTCGATTAAAAT
10592484 CCGAAACCCTTTGTAAAAACATTTGAAAATTAATTATAGTATATGACTTGAATTTTCAAAAGAGT
65 CCGAAACCCTTTGTAAAAACATTTGAAAATTAATTATAGTATATGACTTGAATTTTCAAAAGAGT
*
10592549 AAGGAGTTAAAATGGAGTTTTTGACCTTAAGAAGAATTTCTATATTCGAACGATTGAATTGAATA
130 AAGGAGTTAAAATGGAGTTTTTGACCTTAAGAAGAATTTCTATATTCGAACGATTGAATCGAATA
10592614 TGATTAGAAAATTGGATTAAAAGAAATATTAAAATTTCTTTTAAAACATTTAATTTTGGTATATC
195 TGATTAGAAAATTGGATTAAAAGAAATATTAAAATTTCTTTTAAAACATTTAATTTTGGTATATC
* *
10592679 AAAATTTCAAATCATGTTTCAACAAT
260 AAAATTCCAAAGCATGTTTCAACAAT
10592705 CTCTCTCTTT
Statistics
Matches: 277, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
291 1 0.00
292 276 1.00
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.37
Consensus pattern (292 bp):
TCAGTACTGTTCTTGTAGTATAAGTAATACAGGATTAAAAATATATTTTCGACTCGATTAAAATC
CGAAACCCTTTGTAAAAACATTTGAAAATTAATTATAGTATATGACTTGAATTTTCAAAAGAGTA
AGGAGTTAAAATGGAGTTTTTGACCTTAAGAAGAATTTCTATATTCGAACGATTGAATCGAATAT
GATTAGAAAATTGGATTAAAAGAAATATTAAAATTTCTTTTAAAACATTTAATTTTGGTATATCA
AAATTCCAAAGCATGTTTCAACAATGTCCCTT
Found at i:10594376 original size:23 final size:23
Alignment explanation
Indices: 10594346--10594399 Score: 83
Period size: 23 Copynumber: 2.3 Consensus size: 23
10594336 ATAAATGAAT
10594346 CGAAGTGCC-ACGTAGAATTGCAC
1 CGAAGTGCCGA-GTAGAATTGCAC
10594369 CGAAGTGCCGAGTAGAATTGCAC
1 CGAAGTGCCGAGTAGAATTGCAC
*
10594392 TGAAGTGC
1 CGAAGTGC
10594400 TATATAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 28 0.97
24 1 0.03
ACGTcount: A:0.30, C:0.22, G:0.30, T:0.19
Consensus pattern (23 bp):
CGAAGTGCCGAGTAGAATTGCAC
Found at i:10595456 original size:21 final size:22
Alignment explanation
Indices: 10595421--10595465 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
10595411 TTCACATAGT
10595421 CTTATATTTCATTATCATATGA
1 CTTATATTTCATTATCATATGA
* *
10595443 CTTATATTT-GTTATCCTATGA
1 CTTATATTTCATTATCATATGA
10595464 CT
1 CT
10595466 CTTCATAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.27, C:0.16, G:0.07, T:0.51
Consensus pattern (22 bp):
CTTATATTTCATTATCATATGA
Found at i:10595971 original size:20 final size:20
Alignment explanation
Indices: 10595935--10595972 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
10595925 TTCCCCTTGA
*
10595935 AGTGCATCGATATATTCTAT
1 AGTGCATCGATACATTCTAT
*
10595955 AGTGCATCGATGCATTCT
1 AGTGCATCGATACATTCT
10595973 TTAACATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (20 bp):
AGTGCATCGATACATTCTAT
Found at i:10596067 original size:64 final size:62
Alignment explanation
Indices: 10595980--10596138 Score: 178
Period size: 64 Copynumber: 2.5 Consensus size: 62
10595970 TCTTTAACAT
* * *
10595980 GTGCATCGATGAACTACCCATGCATCGATACACAAA-TCACATTCGATGTTTTCATTTTTAGGGG
1 GTGCATCGATGCACT--CCATGCATCGATACACAAACT-ACATTCGATGTTTCCATTTTTAAGGG
* * * * *
10596044 GTGCATTGATGCACTCCTTATGCATCGATGCACTAACTGCATTCGATGTTTCCATTTTTAATGG
1 GTGCATCGATGCACTCC--ATGCATCGATACACAAACTACATTCGATGTTTCCATTTTTAAGGG
*
10596108 GTGCATCGATGCATTCC-TGCATCGATACACA
1 GTGCATCGATGCACTCCATGCATCGATACACA
10596139 CTGAACAATT
Statistics
Matches: 80, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
61 12 0.15
62 2 0.03
64 65 0.81
65 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (62 bp):
GTGCATCGATGCACTCCATGCATCGATACACAAACTACATTCGATGTTTCCATTTTTAAGGG
Found at i:10601005 original size:64 final size:65
Alignment explanation
Indices: 10600936--10601079 Score: 177
Period size: 64 Copynumber: 2.2 Consensus size: 65
10600926 TCTTTAACAT
* * *
10600936 GTGCATCGATGAACTACC-CATGCATCGATACACAAATCACCTTCGATGTTTTTCA-TTTTAAGG
1 GTGCATCGATGCACTACCTCATGCATCGATACACAAATCACATTCGATG-TTTCCATTTTTAAGG
10600999 G
65 G
* * * ** *
10601000 GTGCATCGATGCACT-CCTTATGCATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGG
1 GTGCATCGATGCACTACCTCATGCATCGATACACAAATCACATTCGATGTTTCCATTTTTAAGGG
10601064 GTGCATCGATGCACTA
1 GTGCATCGATGCACTA
10601080 ATTGCATTCG
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
63 7 0.10
64 61 0.90
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (65 bp):
GTGCATCGATGCACTACCTCATGCATCGATACACAAATCACATTCGATGTTTCCATTTTTAAGGG
Found at i:10601070 original size:45 final size:45
Alignment explanation
Indices: 10601020--10601118 Score: 198
Period size: 45 Copynumber: 2.2 Consensus size: 45
10601010 GCACTCCTTA
10601020 TGCATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGGG
1 TGCATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGGG
10601065 TGCATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGGG
1 TGCATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGGG
10601110 TGCATCGAT
1 TGCATCGAT
10601119 ACATATTGAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.39
Consensus pattern (45 bp):
TGCATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGGG
Found at i:10606732 original size:22 final size:22
Alignment explanation
Indices: 10606707--10606752 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
10606697 GATTCTCCCG
10606707 TTCCATTCTCTAGTAAGATTGA
1 TTCCATTCTCTAGTAAGATTGA
10606729 TTCCATTCTCTAGTAAGATTGA
1 TTCCATTCTCTAGTAAGATTGA
10606751 TT
1 TT
10606753 AGAAATCGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.43
Consensus pattern (22 bp):
TTCCATTCTCTAGTAAGATTGA
Found at i:10624862 original size:15 final size:13
Alignment explanation
Indices: 10624834--10624903 Score: 63
Period size: 13 Copynumber: 5.0 Consensus size: 13
10624824 GTATTTCGCT
10624834 TGAAAAAAAAAAA
1 TGAAAAAAAAAAA
10624847 TGAAAAAGACAAAAA
1 TGAAAAA-A-AAAAA
10624862 TGAAAAATGAAAGAAA
1 TGAAAAA--AAA-AAA
10624878 -GAAAAAAAGAAAA
1 TGAAAAAAA-AAAA
10624891 -GAAAAAAATAAAA
1 TGAAAAAAA-AAAA
10624904 GGAGGGTTCA
Statistics
Matches: 51, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
13 24 0.47
14 2 0.04
15 20 0.39
16 5 0.10
ACGTcount: A:0.79, C:0.01, G:0.13, T:0.07
Consensus pattern (13 bp):
TGAAAAAAAAAAA
Found at i:10624890 original size:7 final size:7
Alignment explanation
Indices: 10624835--10624897 Score: 51
Period size: 6 Copynumber: 9.0 Consensus size: 7
10624825 TATTTCGCTT
10624835 GAAAAAA
1 GAAAAAA
*
10624842 -AAAAAT
1 GAAAAAA
10624848 G-AAAAA
1 GAAAAAA
10624854 GACAAAAA
1 GA-AAAAA
*
10624862 TGAAAAAT
1 -GAAAAAA
10624870 GAAAGAAA
1 GAAA-AAA
10624878 GAAAAAA
1 GAAAAAA
*
10624885 -AGAAAA
1 GAAAAAA
10624891 GAAAAAA
1 GAAAAAA
10624898 ATAAAAGGAG
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
6 15 0.34
7 12 0.27
8 15 0.34
9 2 0.05
ACGTcount: A:0.79, C:0.02, G:0.14, T:0.05
Consensus pattern (7 bp):
GAAAAAA
Found at i:10626120 original size:48 final size:48
Alignment explanation
Indices: 10626044--10626519 Score: 508
Period size: 48 Copynumber: 10.3 Consensus size: 48
10626034 TCAACTCCCC
*
10626044 AGATCTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* * *
10626092 AGATTTGATATTCCCTTTAGAGTAAGTGGAACAAG----TC-T-GCC-
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* * *
10626133 AGATCTGATATTCCCTTCAGAGTAAGCGGAACAGG--TCTCTTCTCAA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
** *
10626179 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAATCTATCTTCTCCA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* * * *
10626227 AGATCTGATATTTCCTTCAGAGTAAG-CGAACAGGTCTCTCTTCTCAA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
** *
10626274 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAATCTAT-TTCTCCA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* * *
10626321 AGATCTGATATTTCCTTCAGAGTAAGCGGAACAGGTCTCTCTTCTCCA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* *
10626369 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAG----TC-T-ACC-
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* * *
10626410 AGATCTGACATTCCCTTCAGAGTAAGTGGAACAGGTCTCT-TTTTCCA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* * ** * *
10626457 TGATTTGATATTCCCTTCAGAAG-AAGCGGAACATATCTCTTTTTTCCA
1 AGATTTGATATTCCCTTCAG-AGTAAGTGGAACAGGTCTCTCTTCTCCA
*
10626505 AGGTTTG-TATTCCCT
1 AGATTTGATATTCCCT
10626520 GTGACAGCGG
Statistics
Matches: 357, Mismatches: 53, Indels: 37
0.80 0.12 0.08
Matches are distributed among these distances:
41 63 0.18
42 4 0.01
43 4 0.01
44 5 0.01
45 3 0.01
46 33 0.09
47 119 0.33
48 126 0.35
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (48 bp):
AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
Found at i:10626295 original size:95 final size:91
Alignment explanation
Indices: 10626042--10626494 Score: 593
Period size: 95 Copynumber: 5.0 Consensus size: 91
10626032 GATCAACTCC
*
10626042 CCAGATCTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCC
1 CCAGATCTGATATTCCCTTCAGAGTAAG-CGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCC
* * *
10626107 TTTAGAGTAAGTGGAACAAGTC---TG
65 TTCAGAGTAAGTGGAACAAATCTATTT
*
10626131 CCAGATCTGATATTCCCTTCAGAGTAAGCGGAACAGG--TCTCTTCTCAAAGATTTGATATTCCC
1 CCAGATCTGATATTCCCTTCAGAGTAAGC-GAACAGGTCTCTCTTCTCCAAGATTTGATATTCCC
10626194 TTCAGAGTAAGTGGAACAAATCTATCTTCT
65 TTCAGAGTAAGTGGAACAAATCTA--TT-T
* *
10626224 CCAAGATCTGATATTTCCTTCAGAGTAAGCGAACAGGTCTCTCTTCTCAAAGATTTGATATTCCC
1 CC-AGATCTGATATTCCCTTCAGAGTAAGCGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCC
10626289 TTCAGAGTAAGTGGAACAAATCTATTTCT
65 TTCAGAGTAAGTGGAACAAATCTA-TT-T
*
10626318 CCAAGATCTGATATTTCCTTCAGAGTAAGCGGAACAGGTCTCTCTTCTCCAAGATTTGATATTCC
1 CC-AGATCTGATATTCCCTTCAGAGTAAGC-GAACAGGTCTCTCTTCTCCAAGATTTGATATTCC
*
10626383 CTTCAGAGTAAGTGGAACAAGTCTA---
64 CTTCAGAGTAAGTGGAACAAATCTATTT
* * * *
10626408 CCAGATCTGACATTCCCTTCAGAGTAAGTGGAACAGGTCTCT-TTTTCCATGATTTGATATTCCC
1 CCAGATCTGATATTCCCTTCAGAGTAAG-CGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCC
* *
10626472 TTCAGAAG-AAGCGGAACATATCT
65 TTCAG-AGTAAGTGGAACAAATCT
10626495 CTTTTTTCCA
Statistics
Matches: 334, Mismatches: 17, Indels: 27
0.88 0.04 0.07
Matches are distributed among these distances:
87 45 0.13
88 37 0.11
89 73 0.22
90 2 0.01
92 1 0.00
93 9 0.03
94 60 0.18
95 107 0.32
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (91 bp):
CCAGATCTGATATTCCCTTCAGAGTAAGCGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCCT
TCAGAGTAAGTGGAACAAATCTATTT
Found at i:10628294 original size:13 final size:14
Alignment explanation
Indices: 10628268--10628296 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
10628258 ATCATAAATT
10628268 TTATATGCTATATA
1 TTATATGCTATATA
10628282 TTATATG-TATATA
1 TTATATGCTATATA
10628295 TT
1 TT
10628297 GTAGTATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.34, C:0.03, G:0.07, T:0.55
Consensus pattern (14 bp):
TTATATGCTATATA
Done.