genome.fa.s9178.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009178.1 Hibiscus syriacus cultivar Beakdansim tig00112743_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75759

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2797--2844	22	2.2	22	88	7	71	37	8	22	31	1.84
2848--3518	194	3.4	192	77	11	641	30	14	15	40	1.87
4833--5417	293	2.0	292	92	3	971	30	13	16	39	1.87
5211--6421	396	3.1	397	92	2	1906	28	14	15	42	1.85
5211--6420	198	6.1	199	86	3	1617	28	14	15	42	1.85
6471--6509	20	1.9	21	94	5	71	12	15	25	46	1.81
14495--14635	64	2.2	63	82	7	169	25	24	17	32	1.97
15444--15482	20	2.0	20	94	0	69	20	25	30	23	1.98
18403--18467	32	2.1	30	83	11	78	44	4	1	49	1.32
18696--18747	21	2.5	21	87	3	70	38	17	25	19	1.93
18736--18836	20	5.0	20	80	7	105	32	24	17	24	1.97
18798--18850	20	2.7	20	90	0	79	24	28	18	28	1.98
18733--18849	61	1.9	61	83	0	153	33	24	17	24	1.96
19406--19446	19	2.2	19	90	0	64	48	26	17	7	1.73
19442--19587	19	8.1	19	72	17	105	13	23	19	43	1.86
19475--19562	33	2.6	33	92	1	149	12	26	21	39	1.89
21664--21730	21	3.2	21	66	6	55	23	35	20	19	1.95
21612--21730	42	2.8	42	76	12	102	23	36	17	22	1.95
23081--23112	14	2.3	14	94	0	55	31	0	25	43	1.55
23271--23329	19	3.4	19	73	22	74	13	22	18	45	1.84
26590--26640	20	2.5	20	93	0	84	31	17	29	21	1.96
26853--26921	20	3.5	20	90	5	115	33	26	24	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27136--27172	14	2.6	14	86	0	56	48	21	0	29	1.50
29031--29098	20	3.5	20	85	2	93	39	23	22	14	1.91
29087--29144	14	3.9	14	79	16	71	48	24	17	10	1.78
29071--29149	32	2.4	33	95	2	142	46	22	18	11	1.81
29178--29235	14	3.9	14	79	16	71	10	17	24	48	1.78
29161--29251	32	2.8	33	94	3	166	12	18	21	47	1.81
29236--29290	20	2.8	19	83	8	65	16	23	23	36	1.94
29769--29812	18	2.5	18	85	3	63	13	15	43	27	1.85
31150--31222	18	4.4	18	75	20	88	17	49	20	12	1.79
31171--31206	12	2.8	13	83	8	56	16	47	22	13	1.82
31154--31229	30	2.5	30	91	4	127	17	46	22	14	1.84
31219--31249	7	4.4	7	100	0	62	16	29	29	25	1.96
33691--33797	24	4.5	24	74	4	90	22	13	16	47	1.81
33957--34071	2	57.5	2	100	0	230	49	0	0	50	1.00
36016--36105	18	5.2	18	78	19	102	16	47	21	14	1.82
36038--36099	13	4.5	13	74	21	63	16	46	22	14	1.83
36020--36099	30	2.6	31	92	4	144	16	47	22	13	1.81
36073--36112	8	5.5	8	77	22	52	15	40	25	20	1.90
38567--38671	24	4.5	23	74	10	88	21	13	17	47	1.81
38833--38891	2	29.5	2	100	0	118	49	0	0	50	1.00
40214--40267	20	2.8	20	80	2	65	48	22	16	12	1.80
40494--40541	22	2.3	21	89	7	71	25	14	39	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40712--40825	41	2.8	41	82	4	142	23	17	23	35	1.95
40773--40826	20	2.7	20	97	0	99	25	18	24	31	1.97
40712--40829	61	1.9	62	86	5	168	22	16	22	37	1.94
40815--40870	21	2.7	21	97	0	103	14	26	19	39	1.90
40712--40847	61	2.2	61	81	6	150	22	19	22	36	1.95
40815--40887	21	3.5	21	88	1	85	16	26	19	38	1.92
40918--40958	21	2.0	21	85	0	55	34	29	17	19	1.94
45635--45678	20	2.1	22	87	8	65	27	22	25	25	2.00
52598--52626	2	14.5	2	100	0	58	51	0	0	48	1.00
55467--55498	2	16.0	2	100	0	64	50	0	0	50	1.00
62087--62153	6	11.2	6	85	0	80	34	49	11	4	1.60
62151--62199	5	9.8	5	80	8	55	20	34	38	6	1.77
68066--68126	6	10.2	6	89	0	95	32	49	14	3	1.60
68066--68122	24	2.4	24	96	0	105	31	50	14	3	1.59
73804--73924	6	20.2	6	87	6	120	31	45	17	5	1.72
73922--73980	5	11.8	5	94	0	64	16	35	40	6	1.76

Tables:   1

The End!