Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000918.1 Hibiscus syriacus cultivar Beakdansim tig00001831_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 59266
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Found at i:1266 original size:22 final size:23
Alignment explanation
Indices: 1182--1265 Score: 141
Period size: 23 Copynumber: 3.7 Consensus size: 23
1172 TTCCCCTCAA
1182 GGGGAATCGGTTCCCCTTCAAAG
1 GGGGAATCGGTTCCCCTTCAAAG
1205 GGGGAATCGGTTCCCCTTCAAAG
1 GGGGAATCGGTTCCCCTTCAAAG
*
1228 GGGGAATCGGTTCCCCTTCAAGG
1 GGGGAATCGGTTCCCCTTCAAAG
* *
1251 GGGGTATCGATTCCC
1 GGGGAATCGGTTCCC
1266 TCTGCACCAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (23 bp):
GGGGAATCGGTTCCCCTTCAAAG
Found at i:10960 original size:29 final size:31
Alignment explanation
Indices: 10787--10965 Score: 256
Period size: 31 Copynumber: 5.8 Consensus size: 31
10777 CGAGGGTTAT
* *
10787 CTATGTTCTTCGGGACATATGGATTGTTTTC
1 CTATGTTCTTCGGGACATATGGACTGTTTAC
* *
10818 CTATGTTCTTCAGGACATATGGACTGCTTAC
1 CTATGTTCTTCGGGACATATGGACTGTTTAC
*
10849 CTATGTTTTTCGGGACATATGGACTGTTTAC
1 CTATGTTCTTCGGGACATATGGACTGTTTAC
*
10880 CTATGTTTTTCGGGACATATGGACTGTTTAC
1 CTATGTTCTTCGGGACATATGGACTGTTTAC
10911 CTATGTTCTTCGGGACATATGGA-TG-TTAC
1 CTATGTTCTTCGGGACATATGGACTGTTTAC
* *
10940 CTAGGTTCTTCGGAATC-TATGGACTG
1 CTATGTTCTTCGGGA-CATATGGACTG
10966 GTCTTTCGGG
Statistics
Matches: 136, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
29 23 0.17
30 5 0.04
31 108 0.79
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.40
Consensus pattern (31 bp):
CTATGTTCTTCGGGACATATGGACTGTTTAC
Found at i:11541 original size:21 final size:21
Alignment explanation
Indices: 11515--11554 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
11505 TTATGAAAAT
11515 ACTGTAGCAGTGCATCGATGC
1 ACTGTAGCAGTGCATCGATGC
11536 ACTGTAGCAGTGCATCGAT
1 ACTGTAGCAGTGCATCGAT
11555 ACATAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (21 bp):
ACTGTAGCAGTGCATCGATGC
Found at i:11599 original size:12 final size:12
Alignment explanation
Indices: 11582--11612 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
11572 ATTTTTTCAC
11582 TGTTCATGGTAT
1 TGTTCATGGTAT
*
11594 TGTTCATGGTGT
1 TGTTCATGGTAT
11606 TGTTCAT
1 TGTTCAT
11613 ACCATATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.10, G:0.26, T:0.52
Consensus pattern (12 bp):
TGTTCATGGTAT
Found at i:20204 original size:33 final size:34
Alignment explanation
Indices: 20132--20214 Score: 132
Period size: 35 Copynumber: 2.4 Consensus size: 34
20122 GAGGGTTTGG
* *
20132 TGTTTCAAGAGAAACATTTTCAAAGGTTTTTTTTG
1 TGTTTCAAGAGAAACAATTTCAAAGG-TTTTTTTA
20167 TGTTTCAAGAGAAACAATTTCAAAGG-TTTTTTA
1 TGTTTCAAGAGAAACAATTTCAAAGGTTTTTTTA
20200 TGTTTCAAGAGAAAC
1 TGTTTCAAGAGAAAC
20215 TGTATTCAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
33 21 0.46
35 25 0.54
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.40
Consensus pattern (34 bp):
TGTTTCAAGAGAAACAATTTCAAAGGTTTTTTTA
Found at i:20281 original size:36 final size:36
Alignment explanation
Indices: 20232--20341 Score: 125
Period size: 36 Copynumber: 3.1 Consensus size: 36
20222 AAAGATTGAA
*
20232 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
1 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTT
* *
20268 GTTTCAAGAGAAACCGTCTCAAGAGAGACAAAA--A
1 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTT
* * * * * *
20302 CTTCCAAAAGAAACTGTCTCAAGGGATACAAGATTT
1 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTT
20338 GTTT
1 GTTT
20342 AACGTAAAAA
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
34 26 0.44
36 33 0.56
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (36 bp):
GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTT
Found at i:20461 original size:36 final size:36
Alignment explanation
Indices: 20406--20479 Score: 103
Period size: 36 Copynumber: 2.1 Consensus size: 36
20396 GCTACAAGAG
* **
20406 AACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGA
1 AACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGA
* *
20442 AACTGTCTCATGAGTGACAAAATTCATTTCAAGGGA
1 AACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGA
20478 AA
1 AA
20480 TGTTTTCAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.26
Consensus pattern (36 bp):
AACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGA
Found at i:20590 original size:102 final size:102
Alignment explanation
Indices: 20363--20632 Score: 314
Period size: 102 Copynumber: 2.7 Consensus size: 102
20353 ATTCAAAGAT
* * * * *
20363 TTTGTTTCAAAGGAAACTGTTTTCAAAGTTTATGCTACAAGAG-AACTGTCTCAAGGGAGACAAA
1 TTTGTTTCAAGGGAAACTGTTTTCAAAGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAA
* * ** * * * *
20427 ATTTGTTTCAAGGGAAACTGTCTCATGAGTGACAAAA
66 ATTAGTTCCAAAAGAAAATGTCACAAGAGAGACAAAA
** *
20464 TTCATTTCAAGGGAAA-TGTTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAA
1 TTTGTTTCAAGGGAAACTGTTTTCAAAGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAA
* *
20528 ACTTAGTTCCAAAAGAAAATGTCACAAGGGAGACGAAA
66 A-TTAGTTCCAAAAGAAAATGTCACAAGAGAGACAAAA
* *
20566 TTTGTTTCAAGGGAAACAG-ATTCAAAGATTT-TGTTTCAAGAGAAACTATCTCAAGAGAGACAA
1 TTTGTTTCAAGGGAAACTGTTTTCAAAG-TTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAA
20629 AATT
65 AATT
20633 CATTTCAAGG
Statistics
Matches: 142, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
100 23 0.16
101 35 0.25
102 80 0.56
103 4 0.03
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (102 bp):
TTTGTTTCAAGGGAAACTGTTTTCAAAGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAA
ATTAGTTCCAAAAGAAAATGTCACAAGAGAGACAAAA
Found at i:20645 original size:65 final size:65
Alignment explanation
Indices: 20552--20690 Score: 174
Period size: 65 Copynumber: 2.1 Consensus size: 65
20542 GAAAATGTCA
* * **
20552 CAAGGGAGACGAAATTTGTTTCAAGGGAAACAG-ATTCAAAGATTT-TGTTTCAAGAGAAACTAT
1 CAAGAGAGACAAAATTCATTTCAAGGGAAA-AGTATTCAAAG-TTTATGTTTCAAGAGAAACTAT
20615 CT
64 CT
* * * *
20617 CAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCT
1 CAAGAGAGACAAAATTCATTTCAAGGGAAAAGTATTCAAAGTTTATGTTTCAAGAGAAACTATCT
20682 CAAGAGAGA
1 CAAGAGAGA
20691 TGAAACCTAG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
64 4 0.06
65 60 0.94
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (65 bp):
CAAGAGAGACAAAATTCATTTCAAGGGAAAAGTATTCAAAGTTTATGTTTCAAGAGAAACTATCT
Found at i:20711 original size:167 final size:167
Alignment explanation
Indices: 20428--20743 Score: 533
Period size: 167 Copynumber: 1.9 Consensus size: 167
20418 GGAGACAAAA
* * * *
20428 TTTGTTTCAAGGGAAACTGTCTCATGAGTGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTT
1 TTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTT
*
20493 TATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAAATGTCACAAGGG
66 TATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAACCTAGTTCCAAAAGAAAATGTCACAAGGG
*
20558 AGACGAAATTTGTTTCAAGGGAAACAGATTCAAAGAT
131 AGAAGAAATTTGTTTCAAGGGAAACAGATTCAAAGAT
20595 TTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTT
1 TTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTT
* ** * *
20660 TATGTTTCAAGAGAAACTGTCTCAAGAGAGATGAAACCTAGTTCTAAAAGAAAATGTCTCAAGGG
66 TATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAACCTAGTTCCAAAAGAAAATGTCACAAGGG
20725 AGAAGAAATTTGTTTCAAG
131 AGAAGAAATTTGTTTCAAG
20744 ACAGACAAAA
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
167 138 1.00
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.29
Consensus pattern (167 bp):
TTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTT
TATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAACCTAGTTCCAAAAGAAAATGTCACAAGGG
AGAAGAAATTTGTTTCAAGGGAAACAGATTCAAAGAT
Found at i:20894 original size:72 final size:75
Alignment explanation
Indices: 20775--20914 Score: 223
Period size: 72 Copynumber: 1.9 Consensus size: 75
20765 AAACAGTCTT
** *
20775 GAGTGAAATGAAATGTCTTCTTTCGAGTGAAAATGGTCTCAAGTGAGACAAAGTCTGTTTTAAGA
1 GAGTGAAATGAAA-GTCTTCTTTCGAGTGAAAACAGTCTCAAGTGAGACAAAGTATGTTTTAAGA
20840 AAAGCAAACTA
65 AAAGCAAACTA
20851 GAGTGAAAT-AAA-TCTTCTTTCGAGT-AAAACAGTCTCAAGTGAGACAAAGTATGTTTTAAGAA
1 GAGTGAAATGAAAGTCTTCTTTCGAGTGAAAACAGTCTCAAGTGAGACAAAGTATGTTTTAAGAA
20913 AA
66 AA
20915 ACAATCTCAA
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
72 36 0.59
73 13 0.21
75 3 0.05
76 9 0.15
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.28
Consensus pattern (75 bp):
GAGTGAAATGAAAGTCTTCTTTCGAGTGAAAACAGTCTCAAGTGAGACAAAGTATGTTTTAAGAA
AAGCAAACTA
Found at i:20916 original size:36 final size:36
Alignment explanation
Indices: 20811--20930 Score: 120
Period size: 36 Copynumber: 3.3 Consensus size: 36
20801 GTGAAAATGG
*
20811 TCTCAAGTGAGACAAAGTCTGTTTTAAGAAAAGCAA
1 TCTCAAGTGAGACAAAGTCTGTTTTAAGAAAAACAA
* * * * * *
20847 ACT-AGAGTGAAATAAA-TCT-TCTTTCGAGTAAAACAG
1 TCTCA-AGTGAGACAAAGTCTGT-TTT-AAGAAAAACAA
*
20883 TCTCAAGTGAGACAAAGTATGTTTTAAGAAAAACAA
1 TCTCAAGTGAGACAAAGTCTGTTTTAAGAAAAACAA
20919 TCTCAAGTGAGA
1 TCTCAAGTGAGA
20931 TAATCATCTG
Statistics
Matches: 64, Mismatches: 14, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
34 1 0.02
35 7 0.11
36 49 0.77
37 6 0.09
38 1 0.02
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.26
Consensus pattern (36 bp):
TCTCAAGTGAGACAAAGTCTGTTTTAAGAAAAACAA
Found at i:20928 original size:72 final size:73
Alignment explanation
Indices: 20758--20933 Score: 214
Period size: 72 Copynumber: 2.4 Consensus size: 73
20748 ACAAAATTTC
* * **
20758 TTTAA-AAAAACAGTCTTGAGTGAAATGAAATGTCTTCTTTCGAGTGAAAATGGTCTCAAGTGAG
1 TTTAAGAAAAACAATC-TAAGTGAAAT-AAA-GTCTTCTTTCGAGTGAAAACAGTCTCAAGTGAG
*
20822 ACAAAGTCTGT
63 ACAAAGTATGT
* *
20833 TTTAAGAAAAGCAAACTAGAGTGAAATAAA-TCTTCTTTCGAGT-AAAACAGTCTCAAGTGAGAC
1 TTTAAGAAAAACAATCTA-AGTGAAATAAAGTCTTCTTTCGAGTGAAAACAGTCTCAAGTGAGAC
20896 AAAGTATGT
65 AAAGTATGT
*
20905 TTTAAGAAAAACAATCTCAAGTGAGATAA
1 TTTAAGAAAAACAATCT-AAGTGAAATAA
20934 TCATCTGCAT
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
72 50 0.57
73 14 0.16
75 9 0.10
76 15 0.17
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (73 bp):
TTTAAGAAAAACAATCTAAGTGAAATAAAGTCTTCTTTCGAGTGAAAACAGTCTCAAGTGAGACA
AAGTATGT
Found at i:22308 original size:183 final size:183
Alignment explanation
Indices: 21993--22346 Score: 620
Period size: 183 Copynumber: 1.9 Consensus size: 183
21983 ACCATGTTTA
*
21993 ACTGAAGGGTTTGTCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCAAATT
1 ACTGAAGGGTTCGTCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCAAATT
* *
22058 GCCAAGTGTCCAAGCAATGTCATGGTTTGAATTTAATCTATTCATAAAGCCAGGGATTTCAAGTT
66 GCCAAGTATCCAAGCAATGTCATGGTTTGAATGTAATCTATTCATAAAGCCAGGGATTTCAAGTT
22123 TCCTCTATAACCAATTGCCGTAGTGGAATAGCTCAGCTTTAGAGGGACAAATC
131 TCCTCTATAACCAATTGCCGTAGTGGAATAGCTCAGCTTTAGAGGGACAAATC
* *
22176 ACTGAAGGGTTCGTGTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATT
1 ACTGAAGGGTTCGTCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCAAATT
* *
22241 GCCAAGTATCCGAA-CAATGTCATGGTTTGAATGTAATCTATTCATAAAGCCAGGGCTTTCGAGT
66 GCCAAGTATCC-AAGCAATGTCATGGTTTGAATGTAATCTATTCATAAAGCCAGGGATTTCAAGT
*
22305 TTCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTA
130 TTCCTCTATAACCAATTGCCGTAGTGGAATAGCTCAGCTTTA
22347 CGGATTTAAT
Statistics
Matches: 162, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
183 160 0.99
184 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (183 bp):
ACTGAAGGGTTCGTCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCAAATT
GCCAAGTATCCAAGCAATGTCATGGTTTGAATGTAATCTATTCATAAAGCCAGGGATTTCAAGTT
TCCTCTATAACCAATTGCCGTAGTGGAATAGCTCAGCTTTAGAGGGACAAATC
Found at i:24685 original size:25 final size:27
Alignment explanation
Indices: 24645--24694 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
24635 AATATATATA
24645 TATATATATATATTTAAAAAATTAAAC
1 TATATATATATATTTAAAAAATTAAAC
*
24672 TATATATA-AT-TTTAAAAATTTAA
1 TATATATATATATTTAAAAAATTAA
24695 GGGAAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 12 0.55
26 2 0.09
27 8 0.36
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (27 bp):
TATATATATATATTTAAAAAATTAAAC
Found at i:25160 original size:56 final size:57
Alignment explanation
Indices: 25083--25196 Score: 151
Period size: 56 Copynumber: 2.0 Consensus size: 57
25073 ATTATATTTC
* * **
25083 AAATCAAATTTAAGTTATAAAATAAGATTTATCAATTTTAATAACTTGA-ATTTTTTA
1 AAATCAAATTTAAGTTATAAAATAAGA-CTATCAACTCGAATAACTTGAGATTTTTTA
* *
25140 AAATCAAA-TTAAGTTATAAAATCAGACTGTCAACTCGAATAACTTGAGATTTTTTA
1 AAATCAAATTTAAGTTATAAAATAAGACTATCAACTCGAATAACTTGAGATTTTTTA
25196 A
1 A
25197 TTTGACTTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
55 16 0.32
56 26 0.52
57 8 0.16
ACGTcount: A:0.45, C:0.09, G:0.08, T:0.39
Consensus pattern (57 bp):
AAATCAAATTTAAGTTATAAAATAAGACTATCAACTCGAATAACTTGAGATTTTTTA
Found at i:26039 original size:13 final size:13
Alignment explanation
Indices: 26007--26053 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
25997 CATGTTCGAT
* *
26007 CCGACCCGCTTGAA
1 CCGACCCGCATG-C
26021 CCGACCCGCATGC
1 CCGACCCGCATGC
26034 CCGACCCGCATGC
1 CCGACCCGCATGC
26047 CCGACCC
1 CCGACCC
26054 AGTCACTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
13 20 0.65
14 11 0.35
ACGTcount: A:0.17, C:0.53, G:0.21, T:0.09
Consensus pattern (13 bp):
CCGACCCGCATGC
Found at i:45020 original size:30 final size:30
Alignment explanation
Indices: 44984--45060 Score: 109
Period size: 30 Copynumber: 2.6 Consensus size: 30
44974 ATGTCTCCTT
44984 AAATGCTCCACTAAGCTCTATATATCTTCC
1 AAATGCTCCACTAAGCTCTATATATCTTCC
* * *
45014 AAATGCTCCACTAAGTTGTATATATTTTCC
1 AAATGCTCCACTAAGCTCTATATATCTTCC
* *
45044 AAGTGCTCCACCAAGCT
1 AAATGCTCCACTAAGCT
45061 GTCCCAACGT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.32
Consensus pattern (30 bp):
AAATGCTCCACTAAGCTCTATATATCTTCC
Found at i:45428 original size:86 final size:86
Alignment explanation
Indices: 45282--45454 Score: 274
Period size: 86 Copynumber: 2.0 Consensus size: 86
45272 ACTTGAACGC
* * * * *
45282 CCAAATATGCTTGTAACATGTTCAAAAGTGGCGATCACTCTGACTGTCGTTCACTTTCCATTGGA
1 CCAAAGATGCTTGTAACATGTTCAAAAGTGGCGATCAATCTGACTGTCATGCACTGTCCATTGGA
45347 CTGCCTTGAATATACATTGCA
66 CTGCCTTGAATATACATTGCA
45368 CCAAAGATGCTTGTAACATGTTCAAAAGTGGCGATCAATCTGACTGTCATGCACTGTCCATTGGA
1 CCAAAGATGCTTGTAACATGTTCAAAAGTGGCGATCAATCTGACTGTCATGCACTGTCCATTGGA
* * *
45433 CTTCCTTGAATGTACCTTGCA
66 CTGCCTTGAATATACATTGCA
45454 C
1 C
45455 TAAAAACGAA
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 79 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (86 bp):
CCAAAGATGCTTGTAACATGTTCAAAAGTGGCGATCAATCTGACTGTCATGCACTGTCCATTGGA
CTGCCTTGAATATACATTGCA
Done.