Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009180.1 Hibiscus syriacus cultivar Beakdansim tig00112747_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109577

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1635--1691
11
5.7
11
76
23
72
35
0
15
49
1.45
1634--1693
20
3.1
20
95
4
106
33
0
15
51
1.43
2030--2076
25
1.9
24
82
4
58
31
0
6
61
1.21
3889--3919
2
15.5
2
100
0
62
51
0
0
48
1.00
13938--14172
122
1.9
122
81
3
285
41
6
11
40
1.67
14400--14561
80
2.0
81
91
3
265
47
6
4
41
1.50
15150--15176
2
13.5
2
100
0
54
48
0
0
51
1.00
16541--16616
36
2.1
36
85
7
100
47
1
3
47
1.29
16970--17008
17
2.3
17
86
8
53
38
0
2
58
1.12
19207--19246
16
2.5
16
100
0
80
25
0
37
37
1.56
37895--37942
25
1.9
25
86
0
69
25
18
27
29
1.98
37933--37983
24
2.1
25
88
3
77
25
27
27
19
1.99
40187--40252
22
3.0
22
97
0
123
24
27
27
21
1.99
40200--40240
13
3.5
13
75
25
54
24
26
26
21
2.00
41951--41995
21
2.1
21
87
0
63
15
24
28
31
1.96
45075--45140
22
3.0
22
97
0
123
24
27
27
21
1.99
45088--45128
13
3.5
13
75
25
54
24
26
26
21
2.00
46765--46826
22
2.8
22
97
0
115
9
32
33
24
1.88
46853--46897
21
2.1
21
87
0
63
15
24
28
31
1.96
56056--56417
22
16.5
22
86
6
475
40
0
11
48
1.39
56056--56417
44
8.2
44
88
3
523
40
0
11
48
1.39
56056--56417
66
5.5
66
89
2
548
40
0
11
48
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63723--63750
14
2.0
14
100
0
56
42
14
14
28
1.84
64000--64046
25
1.9
24
82
4
58
31
4
4
59
1.36
64035--64060
3
8.7
3
100
0
52
34
0
0
65
0.93
67897--67957
31
1.9
32
86
3
88
68
4
3
22
1.23
68640--68673
17
2.1
17
88
5
52
35
14
17
32
1.91
70667--70712
19
2.4
19
82
10
58
23
2
0
73
0.94
70676--70713
14
2.6
15
87
8
60
21
2
0
76
0.91
70692--70732
20
2.0
21
85
4
57
19
4
0
75
0.98
70667--70713
10
5.0
9
82
10
58
23
2
0
74
0.93
70682--70737
20
2.8
20
81
10
53
21
5
0
73
1.03
83387--83453
12
4.9
15
77
17
74
49
13
17
19
1.80
83380--83453
27
2.7
27
95
0
130
47
14
18
18
1.83
83685--83739
14
3.6
14
77
15
56
32
12
12
41
1.81
83687--83736
15
3.2
15
78
10
55
36
10
12
42
1.76
83704--83736
17
1.9
17
100
0
66
39
12
12
36
1.80
83830--83861
16
2.0
17
88
11
50
43
21
21
12
1.86
87747--87780
15
2.1
15
89
10
50
70
0
0
29
0.87
98849--98875
13
2.1
13
100
0
54
44
0
0
55
0.99
99873--99912
19
2.1
19
100
0
80
25
15
32
27
1.95
102115--102231
42
2.8
42
82
0
144
19
17
13
48
1.80
102415--102571
28
6.2
25
69
25
68
45
0
1
52
1.13
102407--102565
27
5.8
27
72
22
95
45
0
1
52
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102407--102481
31
2.5
31
82
10
84
45
1
0
53
1.08
102420--102565
53
2.8
52
73
20
126
46
0
1
51
1.14
102570--102614
23
2.0
23
86
0
63
53
2
2
42
1.25
102654--102723
29
2.3
29
83
11
79
52
4
0
42
1.20
102682--102740
29
2.0
29
83
9
75
59
0
0
40
0.97
102702--102800
49
2.0
50
80
9
114
50
0
2
47
1.12

Tables:   1

The End!