Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009181.1 Hibiscus syriacus cultivar Beakdansim tig00112749_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95860

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8330--8354
9
2.8
9
100
0
50
20
0
0
80
0.72
20350--20401
26
2.0
27
84
3
70
50
3
3
42
1.39
21415--21457
2
21.5
2
95
0
77
48
0
2
48
1.14
27690--27725
2
18.0
2
100
0
72
50
0
0
50
1.00
27890--27938
21
2.2
23
85
7
66
69
2
0
28
1.00
28909--29075
88
1.9
88
93
0
289
28
25
19
26
1.99
31537--31570
16
2.1
16
94
0
59
32
8
26
32
1.87
47624--47671
15
3.1
15
76
5
51
68
0
0
31
0.90
47610--47668
25
2.4
25
88
5
86
64
0
0
35
0.94
47626--47672
8
6.0
8
80
5
51
68
0
0
31
0.90
48251--48276
2
13.0
2
100
0
52
50
0
0
50
1.00
52913--52950
2
19.5
2
94
5
69
50
0
0
50
1.00
53263--53320
29
2.0
29
100
0
116
20
51
10
17
1.74
54665--54695
11
2.8
11
100
0
62
0
6
74
19
1.03
55156--55344
60
3.2
60
78
4
220
42
6
21
29
1.79
55163--55329
59
2.8
61
80
4
196
42
7
21
28
1.79
56927--57025
10
10.3
9
75
12
72
17
27
26
29
1.97
56928--57025
19
5.1
19
77
14
69
16
27
26
29
1.97
56926--57000
29
2.5
30
89
8
118
17
26
26
29
1.97
57022--57101
5
14.8
5
75
14
70
18
50
22
8
1.74
57022--57108
22
4.0
22
96
0
165
18
48
22
10
1.78
64275--64373
10
10.3
9
77
12
81
16
27
27
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64276--64373
19
5.1
19
78
14
78
15
27
27
29
1.96
64274--64373
29
3.4
30
83
9
118
17
27
27
29
1.97
64370--64427
5
10.8
5
78
14
62
18
51
22
6
1.70
64370--64434
22
3.0
22
100
0
130
18
49
23
9
1.76
64424--64453
7
4.3
7
100
0
60
16
26
30
26
1.97
66325--66367
2
21.5
2
100
0
86
51
0
0
48
1.00
67631--67671
21
1.9
22
85
5
57
56
2
0
41
1.13
87521--87559
18
2.2
17
95
4
69
33
17
23
25
1.96
87553--87955
150
2.7
149
83
4
470
31
14
29
25
1.94
88900--88956
30
1.9
30
100
0
114
47
10
10
31
1.72
93655--93706
25
2.1
25
96
3
97
32
13
34
19
1.90
95456--95505
22
2.3
22
93
3
84
64
2
0
34
1.05

Tables:   1

The End!