genome.fa.s9183.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009183.1 Hibiscus syriacus cultivar Beakdansim tig00112754_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103613

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1404--1457	26	2.1	26	89	0	81	11	44	24	20	1.83
11274--11310	19	1.9	19	88	0	56	32	27	16	24	1.96
11336--11430	41	2.3	41	81	3	102	28	20	18	32	1.96
11585--11630	20	2.3	20	88	0	65	23	34	13	28	1.92
12001--12140	20	7.4	19	80	13	96	13	15	22	48	1.79
12049--12137	20	4.4	20	87	2	99	14	13	23	48	1.79
12070--12140	20	3.5	20	92	0	115	11	12	22	53	1.70
13696--13751	21	2.7	21	80	5	60	21	16	33	28	1.95
14044--14114	33	2.1	34	86	2	99	47	18	19	14	1.82
14083--14120	20	1.9	20	94	0	67	50	15	18	15	1.79
14115--14178	19	3.4	19	85	6	85	12	15	25	46	1.81
14183--14251	20	3.5	20	84	4	77	18	20	23	37	1.94
14238--14282	20	2.2	20	88	0	72	17	13	20	48	1.80
14768--14883	42	2.8	42	80	8	121	23	37	18	21	1.94
14757--14864	21	5.2	20	70	13	74	20	35	19	25	1.96
14765--14879	21	5.5	21	68	13	67	22	35	19	22	1.96
16252--16288	14	2.6	14	95	0	65	27	0	24	48	1.51
16408--16461	20	2.7	20	85	5	74	42	27	18	11	1.84
16504--16620	20	5.8	20	90	0	171	26	18	21	33	1.97
16791--16825	18	1.9	18	94	0	61	17	2	25	54	1.57
18865--18901	14	2.6	14	91	4	56	5	21	21	51	1.68
19091--19144	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19965--20072	20	5.3	20	85	6	146	24	16	28	30	1.96
19963--20113	60	2.5	60	82	11	159	24	15	28	31	1.96
20096--20134	19	2.1	19	90	0	60	23	12	28	35	1.91
31901--31930	3	10.0	3	100	0	60	66	0	33	0	0.92
36677--36716	20	2.0	20	90	9	64	12	30	30	27	1.93
36779--36897	59	2.0	59	98	0	229	36	6	15	41	1.74
37579--37635	21	2.7	21	88	0	87	28	22	24	24	2.00
40109--40136	2	14.0	2	100	0	56	50	0	0	50	1.00
41618--41646	4	7.2	4	100	0	58	75	0	0	24	0.80
41600--41646	16	2.9	16	81	9	51	65	0	12	21	1.25
43605--43638	18	1.9	17	88	5	50	55	5	20	17	1.62
44408--44453	20	2.3	20	96	0	83	32	4	8	54	1.51
44477--44517	22	1.9	21	85	5	55	17	24	34	24	1.96
46577--46632	23	2.4	23	76	5	60	19	3	3	73	1.13
49764--49837	26	2.7	28	76	21	84	71	1	5	21	1.13
49763--49811	16	2.9	16	80	11	53	71	2	4	22	1.13
49918--50010	33	2.9	31	78	9	87	60	6	4	29	1.41
50376--50477	34	2.9	36	86	7	163	28	14	12	44	1.82
51025--51259	100	2.3	104	88	4	334	22	19	24	33	1.97
51198--51302	43	2.4	43	98	0	201	19	19	25	36	1.95
51100--51407	148	2.1	143	92	3	499	21	16	26	35	1.94
51241--51899	105	6.3	105	95	0	1120	21	16	27	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52541--52698	68	2.4	66	84	6	203	36	8	22	32	1.85
52674--52896	36	6.4	35	73	14	165	39	13	19	26	1.89
52685--52796	37	3.1	36	80	8	120	42	15	19	22	1.88
52622--52878	138	1.9	138	85	1	354	40	13	19	26	1.89
52868--52914	21	2.2	21	92	0	76	40	10	19	29	1.85
52889--52989	35	2.9	35	72	10	89	41	14	19	23	1.89
53419--53454	18	2.0	18	88	0	54	41	30	8	19	1.81
53870--53918	22	2.2	22	92	0	80	28	14	24	32	1.94
53882--53925	22	2.0	22	86	0	61	31	13	22	31	1.93
54564--54634	8	9.1	7	77	17	61	0	15	7	77	0.97
54558--54613	16	3.4	17	78	4	53	0	16	8	75	1.05
54589--54640	16	3.2	16	79	12	54	0	13	7	78	0.94
57832--57866	16	2.1	18	89	10	56	65	0	5	28	1.15
57799--57927	19	6.8	17	68	21	55	67	2	6	23	1.27
57876--57927	20	2.7	20	75	3	61	67	1	5	25	1.23
58439--58540	34	2.9	36	88	7	163	28	14	12	44	1.82
60319--60374	19	2.8	20	86	5	87	41	10	3	44	1.56
65588--65648	29	2.1	29	90	0	95	31	1	26	40	1.66
66029--66068	21	1.9	21	85	10	55	35	7	0	57	1.27
69291--69363	36	2.0	36	84	5	94	35	21	9	32	1.86
70387--70420	18	1.9	18	88	5	52	17	26	29	26	1.98
71300--71349	21	2.4	21	100	0	100	26	14	30	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71338--71430	20	4.6	20	84	7	134	11	24	23	39	1.88
71317--71410	41	2.3	41	92	3	154	15	22	25	36	1.94
71422--71474	22	2.4	22	100	0	106	16	18	28	35	1.93
71576--71652	6	13.2	6	98	1	140	31	51	16	0	1.45
77988--78062	38	2.0	36	85	10	98	50	2	0	46	1.15
82230--82281	20	2.6	20	96	0	95	38	26	13	21	1.90
82337--82530	20	9.6	20	76	8	76	35	25	19	19	1.95
82333--82530	40	5.0	39	81	4	200	35	26	19	19	1.95
82337--82529	60	3.2	60	83	0	251	35	25	19	19	1.95
82911--82981	33	2.2	33	92	0	115	11	22	18	47	1.80
83101--83155	14	3.6	14	73	21	56	41	23	25	9	1.83
83101--83171	33	2.2	33	94	0	124	43	25	22	8	1.81
83172--83285	33	3.5	33	91	1	185	10	23	21	44	1.83
83167--83263	19	5.7	18	70	21	75	11	23	22	42	1.86
83221--83277	14	3.7	14	79	20	69	8	26	24	40	1.84
84984--85362	93	4.1	93	98	1	735	22	12	18	46	1.83
84984--85364	185	2.1	185	97	1	737	22	12	18	46	1.83
85406--85534	19	7.3	19	75	17	125	46	28	16	8	1.76
85442--85534	33	2.8	32	91	4	150	47	27	17	7	1.74
85406--85534	52	2.5	52	72	14	131	46	28	16	8	1.76
85530--85664	19	7.6	19	75	16	128	11	19	23	45	1.82
85552--85608	14	3.7	14	77	20	60	10	21	22	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85535--85627	33	2.8	33	95	0	168	10	20	21	47	1.80
87568--87603	14	2.6	14	95	0	63	33	0	22	44	1.53
87710--87811	19	5.6	19	84	13	151	44	17	23	14	1.86
87840--88112	19	15.4	19	81	15	345	14	20	18	46	1.83
87818--88084	52	5.0	52	91	5	428	14	21	17	46	1.84
87840--88079	108	2.3	102	82	12	167	14	21	17	46	1.83
87818--88112	33	8.5	33	75	21	155	14	20	18	46	1.84
90587--90633	24	2.0	24	87	8	69	38	21	14	25	1.92
91316--91684	20	18.5	20	86	5	451	20	18	26	34	1.96
96932--96979	26	1.9	25	87	8	71	39	4	2	54	1.32
99414--99480	32	2.1	32	83	2	82	28	0	11	59	1.33
102279--102342	13	5.2	13	78	17	59	12	23	46	17	1.81
102284--102343	18	3.4	18	95	4	113	10	23	50	16	1.75
102346--102397	9	5.3	10	82	11	63	38	30	17	13	1.88
102353--102382	11	2.8	11	95	5	53	36	26	20	16	1.93

Tables:   1

The End!