genome.fa.s9184.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009184.1 Hibiscus syriacus cultivar Beakdansim tig00112757_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104462

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1250--1297	23	2.1	23	84	7	62	52	14	0	33	1.42
4185--4232	26	1.9	25	87	8	71	39	4	2	54	1.32
6674--6740	32	2.1	32	83	2	82	28	0	11	59	1.33
9556--9619	13	5.2	13	78	17	59	12	23	46	17	1.81
9561--9620	18	3.4	18	95	4	113	10	23	50	16	1.75
9623--9674	9	5.3	10	82	11	63	38	30	17	13	1.88
9630--9659	11	2.8	11	95	5	53	36	26	20	16	1.93
16797--16873	17	4.4	18	88	4	113	11	23	45	19	1.83
16797--16873	35	2.2	35	92	0	127	11	23	45	19	1.83
16883--16930	10	4.8	10	85	10	71	37	27	20	14	1.92
17948--17991	21	2.0	22	86	4	63	52	4	15	27	1.63
18972--19057	23	3.7	23	87	0	118	20	26	23	29	1.99
20948--21023	32	2.3	32	80	10	84	53	5	5	35	1.46
22516--22557	20	2.0	21	86	9	59	45	0	0	54	0.99
22546--22583	18	2.2	17	86	13	51	36	5	0	57	1.21
24662--24711	25	2.0	25	96	0	91	44	12	22	22	1.85
25743--25798	18	2.9	19	75	14	53	26	12	1	58	1.44
26972--27014	21	2.2	19	87	8	59	32	25	25	16	1.96
28680--28892	101	2.1	100	91	3	327	27	13	22	36	1.92
28909--28976	23	3.0	23	86	0	82	22	29	23	25	1.99
31956--32000	21	2.1	21	87	0	63	31	28	24	15	1.96
32741--32777	16	2.3	16	100	0	74	27	5	29	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33230--33278	25	1.9	26	87	4	73	28	26	8	36	1.85
34343--34384	15	2.8	15	96	0	75	54	23	7	14	1.64
36645--36683	18	2.2	18	85	0	51	38	25	28	7	1.83
46565--46610	2	23.0	2	100	0	92	50	0	0	50	1.00
46610--46654	2	22.5	2	90	0	72	2	2	46	48	1.26
47109--47593	182	2.7	182	90	1	749	42	14	16	26	1.87
49964--50008	21	2.1	21	91	0	72	44	11	31	13	1.78
53457--53934	200	2.4	200	86	5	646	40	14	14	30	1.86
55111--55216	33	3.1	34	78	15	87	34	0	3	61	1.14
55143--55221	34	2.4	34	85	8	101	37	0	1	60	1.05
55133--55231	34	3.0	32	71	14	76	39	0	3	57	1.14
55360--55413	17	3.2	17	72	0	54	31	0	3	64	1.11
56991--57084	21	4.5	21	89	5	120	18	35	25	21	1.95
57607--57703	33	2.9	33	83	9	106	56	4	3	36	1.34
57605--57710	34	3.2	31	80	12	104	55	4	2	36	1.35
58104--58859	128	5.9	128	99	0	1478	32	19	25	22	1.98
58930--58970	8	5.2	8	82	5	57	36	29	0	34	1.58
66926--67028	54	1.9	54	83	0	134	20	25	24	30	1.99
73294--73339	25	2.0	24	83	12	60	50	6	10	32	1.63
73438--73489	27	1.9	27	84	0	68	44	1	9	44	1.48
73953--74139	97	1.9	103	84	6	260	52	14	2	29	1.55
73953--74160	97	2.1	103	82	7	259	53	13	2	29	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77179--77262	16	5.3	16	75	5	64	47	34	11	5	1.65
80505--80584	3	26.7	3	100	0	160	0	33	0	66	0.92
83778--83921	71	2.0	71	100	0	288	45	11	12	30	1.77
97537--97572	2	18.0	2	100	0	72	50	0	0	50	1.00
99087--99158	28	2.6	26	82	8	81	50	16	8	25	1.73
99097--99158	28	2.2	28	97	0	115	50	19	9	20	1.76
103953--104019	33	2.0	34	82	8	84	49	0	2	47	1.16
104001--104046	17	2.7	17	79	0	56	52	2	2	43	1.25
104167--104224	20	2.9	20	94	0	98	22	27	10	39	1.86

Tables:   1

The End!