genome.fa.s9186.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009186.1 Hibiscus syriacus cultivar Beakdansim tig00112759_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192732

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567--625	20	3.0	20	87	0	73	42	22	18	16	1.89
886--943	22	2.6	22	91	0	98	17	18	44	18	1.87
1129--1221	20	4.7	20	94	0	159	24	19	29	26	1.98
1252--1304	21	2.5	22	81	6	74	33	18	26	20	1.96
3020--3061	2	20.5	2	85	4	57	45	4	0	50	1.23
9580--10151	233	2.5	233	90	0	869	32	16	17	34	1.92
10642--10743	44	2.3	44	85	6	136	40	39	9	10	1.73
12578--12697	31	3.8	31	78	7	118	28	18	21	31	1.97
13844--14468	113	5.5	113	87	2	848	27	24	17	31	1.97
14357--14655	135	2.2	134	83	6	390	28	24	16	29	1.97
14801--14845	3	15.3	3	90	4	74	35	0	0	64	0.94
16698--16732	2	17.5	2	100	0	70	48	0	0	51	1.00
23228--23265	19	2.0	19	94	0	67	39	0	13	47	1.42
23676--23701	13	2.0	13	100	0	52	23	0	15	61	1.33
25967--26049	39	2.1	39	90	0	130	50	20	6	22	1.70
29101--29219	30	3.9	30	72	11	100	34	15	5	44	1.70
29463--29541	29	2.7	29	84	3	88	26	21	15	36	1.93
29529--29598	28	2.4	29	83	6	81	18	18	21	41	1.91
30110--30140	16	1.9	16	93	0	53	22	12	19	45	1.84
30185--30241	25	2.4	24	80	14	64	22	17	22	36	1.94
30716--30765	24	2.1	24	88	7	75	36	14	6	44	1.69
31206--31315	58	1.9	58	83	3	141	37	18	14	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31206--31331	58	2.2	58	80	5	137	35	17	15	30	1.92
44440--44474	15	2.3	15	95	0	61	37	31	11	20	1.88
45144--45393	117	2.1	117	88	0	392	15	32	20	32	1.94
45163--45472	117	2.6	116	85	4	365	15	30	20	33	1.94
47967--48013	6	7.2	6	82	17	58	65	0	4	29	1.11
47973--48013	22	2.0	20	90	9	64	65	0	4	29	1.13
50676--50720	13	3.6	12	82	8	54	17	26	2	53	1.56
55698--55829	58	2.3	58	81	9	160	39	18	12	30	1.87
71505--71570	32	2.0	34	85	11	93	31	21	3	43	1.67
73394--73476	3	28.3	3	89	4	125	62	0	2	34	1.08
77040--77080	16	2.4	18	80	8	50	56	4	2	36	1.34
77508--77890	182	2.1	184	91	4	616	42	2	7	46	1.47
83017--83060	19	2.3	19	92	0	70	38	9	13	38	1.77
83088--83129	21	2.0	21	85	0	57	23	26	23	26	2.00
84621--84689	20	3.1	22	73	14	61	72	1	5	20	1.13
85853--85919	25	3.0	22	78	18	66	73	2	1	22	1.06
85866--85923	25	2.4	25	82	8	75	74	1	0	24	0.92
85969--86024	26	2.2	26	90	0	85	53	5	1	39	1.34
85921--86113	65	3.0	63	76	8	167	47	6	2	43	1.41
85995--86223	35	6.6	34	80	12	261	45	5	2	45	1.40
85995--86223	72	3.3	69	85	8	290	45	5	2	45	1.40
92611--93197	84	7.0	84	77	5	463	16	30	11	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92606--93136	252	2.1	252	91	0	855	15	30	12	42	1.83
96916--96951	18	2.0	18	88	0	54	19	47	19	13	1.83
99435--99529	24	4.0	24	78	0	91	18	11	18	50	1.77
99462--99527	12	5.6	12	73	8	55	15	12	19	53	1.73
99688--99724	2	18.5	2	100	0	74	48	0	0	51	1.00
102923--102995	24	3.0	24	87	0	119	26	8	28	36	1.85
107506--107581	24	3.2	24	90	0	125	23	11	31	32	1.91
110164--110223	22	2.8	21	78	16	61	50	0	0	50	1.00
110184--110223	21	1.9	21	90	10	64	47	0	0	52	1.00
110245--110290	20	2.2	20	84	11	56	56	0	0	43	0.99
110688--110741	14	3.9	14	80	9	74	11	14	14	59	1.62
110932--111001	32	2.2	33	84	7	90	15	8	17	58	1.61
110962--111017	24	2.5	22	85	5	67	14	8	17	58	1.61
137788--137851	27	2.3	26	80	15	67	32	3	4	59	1.34
145731--145773	21	2.0	21	90	0	68	16	27	37	18	1.92
152043--152080	20	1.9	20	88	0	58	36	7	15	39	1.77
156045--156114	19	3.7	19	100	0	140	58	11	5	24	1.54
157340--157385	20	2.3	20	85	3	58	36	0	23	39	1.55
161854--161926	38	1.9	38	94	0	128	28	12	17	41	1.86
162758--162936	30	6.0	30	91	0	277	43	18	35	2	1.63
162853--162938	18	5.4	18	63	34	63	43	19	37	0	1.52
163638--164010	178	2.1	176	89	5	569	41	2	8	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164580--164737	59	3.0	49	66	22	115	37	10	12	39	1.77
165427--165564	69	2.0	69	97	2	260	44	18	10	25	1.82
175806--175847	15	2.9	15	79	13	52	33	0	2	64	1.07
176091--176127	17	2.2	18	85	9	51	37	0	0	62	0.96
176838--177056	111	2.0	110	95	0	393	35	8	10	45	1.68
182555--182633	27	3.0	27	80	5	74	37	5	0	56	1.21
182969--183077	21	5.3	21	76	5	107	43	17	22	17	1.88
182969--183079	41	2.7	41	94	4	188	42	18	22	17	1.89
183072--183123	20	2.6	20	93	0	86	26	28	19	25	1.98
183640--183695	19	2.9	19	86	2	85	48	23	17	10	1.79
183707--183867	20	8.8	19	74	16	135	11	21	22	44	1.85
183707--183783	39	2.0	39	87	5	111	9	19	25	45	1.80
183755--183842	33	2.6	33	92	1	140	11	25	25	38	1.89
185866--185988	42	2.9	42	80	2	122	22	36	17	22	1.95
185922--185988	21	3.2	21	66	6	55	23	35	20	19	1.95
187349--187380	14	2.3	14	94	0	55	31	0	25	43	1.55
187559--187709	19	8.7	19	63	21	71	15	22	20	41	1.90
187563--187689	33	3.9	32	86	8	184	15	22	19	41	1.89
187556--187688	66	2.0	66	95	0	239	17	22	19	40	1.91
190173--190226	24	2.2	24	90	0	81	38	20	16	24	1.92
191262--191319	20	2.9	20	92	0	89	37	20	22	18	1.94
191343--191396	14	3.5	14	77	22	63	11	20	20	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191325--191395	33	2.2	33	84	0	88	19	19	21	39	1.93
191338--191415	33	2.4	33	91	0	120	12	23	21	42	1.87
191481--191548	13	5.2	13	74	11	50	51	17	1	29	1.54

Tables:   1

The End!