genome.fa.s9187.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009187.1 Hibiscus syriacus cultivar Beakdansim tig00112760_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59302

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5308--5339	2	16.5	2	93	6	57	50	0	0	50	1.00
8396--8432	17	2.2	18	85	9	51	37	0	0	62	0.96
9141--9360	111	2.0	111	96	0	404	35	8	10	45	1.68
14838--14916	27	3.0	27	80	5	74	37	5	0	56	1.21
15253--15361	21	5.3	21	76	5	107	43	17	22	17	1.88
15253--15363	41	2.7	41	94	4	188	42	18	22	17	1.89
15356--15407	20	2.6	20	93	0	86	26	28	19	25	1.98
15926--15981	19	2.9	19	86	2	85	48	23	17	10	1.79
15993--16153	20	8.8	19	74	16	135	11	21	22	44	1.85
15993--16069	39	2.0	39	87	5	111	9	19	25	45	1.80
16041--16128	33	2.6	33	92	1	140	11	25	25	38	1.89
18152--18274	42	2.9	42	80	2	122	22	36	17	22	1.95
18208--18274	21	3.2	21	66	6	55	23	35	20	19	1.95
19632--19667	14	2.6	14	95	0	63	30	0	25	44	1.54
19846--19996	19	8.7	19	63	21	71	15	22	20	41	1.90
19850--19976	33	3.9	32	86	8	184	15	22	19	41	1.89
19843--19975	66	2.0	66	95	0	239	17	22	19	40	1.91
22268--22292	12	2.1	12	100	0	50	0	28	0	72	0.86
22467--22520	24	2.2	24	90	0	81	38	20	16	24	1.92
23560--23617	20	2.9	20	92	0	89	37	20	22	18	1.94
23641--23694	14	3.5	14	77	22	63	11	20	20	48	1.80
23623--23693	33	2.2	33	84	0	88	19	19	21	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23636--23713	33	2.4	33	91	0	120	12	23	21	42	1.87
25687--25784	19	5.4	19	75	14	91	43	24	18	13	1.85
25741--25798	14	3.9	14	77	16	62	48	24	17	10	1.78
25725--25803	32	2.4	33	93	2	133	46	22	18	11	1.81
25703--25814	52	2.2	52	80	7	122	46	24	17	11	1.81
25832--25889	14	3.9	14	79	16	71	10	17	24	48	1.78
25815--25905	32	2.8	33	94	3	166	12	18	21	47	1.81
25890--25927	20	2.0	20	89	5	60	18	26	23	31	1.97
25878--25944	20	3.4	19	74	10	55	14	20	23	40	1.90
26417--26461	18	2.5	18	88	0	72	13	15	44	26	1.83
27781--27818	20	1.9	20	88	0	58	50	21	15	13	1.78
28313--28406	20	4.7	20	80	2	89	23	18	24	34	1.96
28293--28407	20	5.7	20	78	5	88	23	17	23	35	1.95
28396--28488	20	4.5	21	78	4	100	17	24	18	39	1.91
28335--28469	41	3.3	41	82	4	139	19	21	20	38	1.94
28396--28488	41	2.3	41	100	0	186	17	24	18	39	1.91
29617--29662	22	2.0	23	84	12	60	39	8	4	47	1.54
32845--32895	22	2.4	21	83	9	59	52	0	0	47	1.00
33037--33134	21	4.7	21	69	15	69	36	20	22	20	1.95
33102--33296	20	9.6	20	71	6	106	37	23	19	20	1.94
33121--33296	81	2.2	81	84	4	230	36	23	18	20	1.95
33163--33293	41	3.2	41	89	2	201	36	24	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33370--33410	21	2.0	21	90	0	64	17	26	17	39	1.91
33371--33417	21	2.2	21	84	0	58	21	25	19	34	1.96
33407--33532	20	6.3	20	90	1	175	39	21	17	21	1.92
33497--33542	20	2.3	20	84	0	56	36	19	17	26	1.94
34395--34448	24	2.2	24	93	0	90	20	18	20	40	1.91
36883--36971	20	4.4	20	87	2	126	34	23	22	19	1.96
36943--37038	33	2.8	33	88	3	129	41	19	23	14	1.89
37189--37225	14	2.6	14	86	0	56	48	21	0	29	1.50
37265--37360	19	5.3	19	81	13	130	46	16	20	15	1.83
37243--37360	38	3.4	33	80	12	137	45	16	22	15	1.84
37380--37475	33	2.8	33	87	3	120	14	25	19	40	1.90
37577--37613	14	2.6	14	86	0	56	48	21	0	29	1.50
38901--39012	42	2.7	42	76	5	111	22	18	37	21	1.94
39492--39577	20	4.3	20	86	1	111	38	19	18	23	1.93
39612--39688	19	4.3	19	76	15	65	9	14	29	46	1.75
39628--39690	33	1.9	33	100	0	126	6	14	30	49	1.68
39612--39740	52	2.5	52	80	2	134	10	16	24	49	1.76
39646--39672	14	1.9	14	100	0	54	7	14	29	48	1.71
39621--39690	19	3.9	19	80	17	96	5	14	30	50	1.66
39659--39740	19	4.6	19	72	14	75	9	18	20	51	1.74
39681--39754	33	2.2	33	97	0	139	10	20	17	51	1.75
39695--39768	14	4.9	14	73	16	58	10	21	18	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39856--40235	94	4.1	94	94	1	638	47	18	12	21	1.81
41992--42075	19	4.7	19	78	14	106	45	21	21	11	1.84
42121--42230	41	2.7	41	94	4	188	13	18	19	49	1.80
42088--42233	20	7.6	19	75	15	124	12	18	19	50	1.78
42527--42578	27	2.0	26	88	7	79	21	11	34	32	1.89
42789--43002	20	10.6	20	79	6	234	19	19	24	36	1.94
42791--43002	41	5.2	41	91	1	338	19	18	24	37	1.94
43011--43063	20	2.7	20	93	0	88	13	16	24	45	1.83
43031--43185	42	3.8	42	70	16	103	19	18	23	38	1.93
43113--43166	20	2.7	19	75	8	63	16	18	31	33	1.93
52133--52313	93	1.9	93	94	0	317	34	9	7	48	1.64

Tables:   1

The End!