genome.fa.s919.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000919.1 Hibiscus syriacus cultivar Beakdansim tig00001832_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127907

Tables:   1   

This is table  1  of  1  ( 108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3462--3521	3	19.0	3	89	3	75	40	0	0	60	0.97
4691--4723	12	2.8	12	100	0	66	30	0	9	60	1.27
4985--5045	2	30.5	2	100	0	122	49	0	0	50	1.00
5058--5316	141	1.8	140	82	8	337	39	6	7	45	1.60
13708--13958	75	3.4	74	81	3	236	31	16	21	31	1.95
13785--13958	75	2.4	72	88	2	240	29	17	22	30	1.97
15115--15191	22	3.5	22	75	3	75	36	14	12	36	1.84
15849--16422	45	12.7	45	94	1	977	23	23	19	33	1.97
15849--16422	136	4.2	136	94	0	981	23	23	19	33	1.97
15849--16422	181	3.2	180	94	0	977	23	23	19	33	1.97
16676--16758	6	12.5	6	89	5	76	42	0	0	57	0.98
16676--16758	18	4.2	20	82	17	102	42	0	0	57	0.98
16719--16753	2	17.5	2	100	0	70	48	0	0	51	1.00
18182--18231	16	3.1	16	81	16	59	26	6	0	68	1.13
18220--18280	14	4.3	14	74	25	56	27	4	1	65	1.22
18295--18361	2	33.5	2	96	0	125	50	0	0	49	1.00
19830--20024	36	5.4	36	85	2	241	47	9	13	29	1.74
19812--20024	71	3.0	72	85	2	259	46	9	13	29	1.75
20173--20460	116	2.5	116	82	6	350	23	21	14	40	1.90
20812--20847	14	2.6	14	100	0	72	5	19	8	66	1.38
22663--22690	5	5.6	5	100	0	56	82	0	0	17	0.68
24085--24152	19	3.6	19	83	0	91	33	17	27	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24085--24157	38	1.9	38	88	0	110	32	17	28	20	1.96
25132--25389	115	2.2	115	82	4	306	26	20	15	37	1.92
34090--34150	28	2.2	28	90	0	104	45	11	11	31	1.76
40953--40995	15	2.8	16	86	6	54	58	2	0	39	1.11
42023--42182	29	5.6	28	71	14	112	34	8	2	55	1.43
42003--42161	85	1.9	85	93	2	275	31	8	2	57	1.43
41998--42185	85	2.2	85	86	3	265	34	8	2	54	1.43
42153--42194	18	2.3	18	88	8	59	40	4	0	54	1.21
42194--42242	18	2.7	18	83	3	62	42	0	12	44	1.41
42453--42486	16	2.1	16	88	0	50	70	0	0	29	0.87
44292--44338	2	23.5	2	100	0	94	48	0	0	51	1.00
48901--48930	14	2.1	14	93	0	51	46	0	0	53	1.00
49755--49785	3	10.3	3	100	0	62	35	0	0	64	0.94
51767--51821	21	2.6	21	80	11	76	60	1	0	38	1.08
62726--62788	11	5.7	11	77	17	60	9	9	0	80	0.89
62737--62790	18	3.1	17	89	7	74	9	9	0	81	0.88
62724--62844	27	4.4	26	69	20	68	10	10	1	76	1.08
62726--62846	57	2.1	57	80	11	133	10	10	1	76	1.08
68513--68550	3	12.0	3	89	10	58	63	0	0	36	0.95
68955--68987	3	11.3	3	93	6	59	63	0	0	36	0.95
79319--79352	15	2.3	15	100	0	68	35	0	17	47	1.48
80332--80366	2	18.0	2	94	5	63	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81924--81969	20	2.3	20	92	7	76	69	4	4	21	1.24
88386--88425	19	2.1	19	95	0	71	57	10	2	30	1.45
89561--89773	30	7.2	29	73	8	133	57	10	11	20	1.62
91275--91322	3	16.7	3	83	16	66	66	0	0	33	0.92
91523--91969	133	3.4	132	85	3	576	26	18	31	24	1.97
91890--92052	82	2.0	82	86	2	229	24	18	34	22	1.96
92180--92455	133	2.1	127	86	6	378	39	13	15	31	1.86
92118--92455	66	5.2	64	73	14	241	39	13	15	31	1.86
93601--93751	16	9.6	16	73	17	77	1	15	3	78	0.96
93590--93769	13	14.1	13	73	17	87	1	17	5	76	1.02
93601--93745	29	5.0	28	75	17	113	1	15	4	79	0.95
93600--93764	44	3.9	43	78	17	163	1	16	4	77	0.99
93658--93698	18	2.4	17	92	8	73	0	12	4	82	0.81
93612--93760	55	2.7	55	80	12	153	1	16	4	77	0.98
93587--93765	38	4.7	37	70	18	109	1	17	5	76	1.02
93616--93747	57	2.4	53	75	15	74	1	16	3	78	0.95
93680--93769	25	3.5	26	79	8	87	1	16	4	77	0.98
94357--94397	20	2.0	20	95	0	73	36	12	19	31	1.89
97492--97529	18	2.1	18	95	0	67	42	2	10	44	1.52
97542--97581	15	2.7	15	96	0	71	62	5	12	20	1.48
97748--97931	30	6.2	30	73	12	128	58	11	9	20	1.61
98378--98412	14	2.5	14	95	0	61	8	34	0	57	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99455--99699	45	5.5	45	88	0	366	24	20	15	39	1.92
99459--99699	89	2.7	90	88	1	367	24	20	15	39	1.91
103483--103513	10	3.1	10	95	0	53	41	0	6	51	1.27
103479--103509	14	2.2	14	94	0	53	38	0	9	51	1.35
106113--106250	23	6.1	23	79	4	129	36	25	20	17	1.94
106180--106239	21	2.8	21	82	5	75	40	25	16	18	1.91
106246--106308	21	3.0	20	79	4	63	41	19	11	28	1.85
106292--106331	21	1.9	21	90	10	64	40	15	15	30	1.87
107584--107650	23	2.9	24	91	6	111	32	25	20	20	1.97
107827--107859	15	2.2	15	94	0	57	57	12	0	30	1.35
112977--113050	24	3.1	24	77	9	80	27	22	24	25	2.00
112982--113080	23	4.2	24	79	5	94	31	22	21	25	1.98
113316--113356	22	1.9	21	85	5	55	65	4	0	29	1.13
114842--115679	226	3.7	226	85	2	1081	31	15	12	39	1.85
115768--115825	22	2.6	22	100	0	116	37	13	13	34	1.85
121582--121804	5	45.0	5	78	20	231	39	0	0	60	1.01
121586--121804	7	29.9	7	76	21	161	39	0	0	60	1.01
121582--121804	26	8.6	26	81	17	259	39	0	0	60	1.01
121571--121852	48	6.0	48	81	14	274	36	1	0	62	1.02
121590--121852	7	35.0	7	69	18	79	36	1	0	62	1.03
121602--121852	36	7.4	33	75	16	87	35	1	0	62	1.03
122000--122032	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122236--122360	17	7.2	16	73	19	83	16	4	1	77	1.01
122214--122391	55	3.2	54	78	14	152	14	7	2	75	1.13
122231--122335	14	7.7	13	76	20	90	12	6	0	80	0.96
122238--122391	53	2.9	54	82	14	167	14	6	2	75	1.10
122238--122402	37	4.1	42	72	19	111	14	6	3	76	1.10
122357--122403	18	2.5	19	74	19	53	8	10	6	74	1.22
122375--122417	20	2.2	20	83	8	52	9	6	6	76	1.15
122981--123583	43	14.2	43	72	13	324	26	15	6	51	1.68
122981--123583	85	7.1	84	72	15	372	26	15	6	51	1.68
123170--123400	123	1.9	122	82	7	290	24	18	6	50	1.71
124601--124651	24	2.1	24	82	7	59	68	1	7	21	1.25
124633--124756	56	2.2	56	76	17	130	69	4	4	21	1.24
124723--124747	13	1.9	13	100	0	50	72	0	0	28	0.86
124778--124839	22	2.6	22	80	14	70	79	0	8	12	0.94
124798--124885	8	12.3	7	75	10	56	78	2	6	12	1.04
124879--125001	23	5.5	22	72	17	78	67	0	7	24	1.21
124954--125001	3	17.7	3	76	20	52	72	0	2	25	0.95
124953--125002	5	9.4	5	91	4	64	74	0	2	24	0.93
127057--127097	21	1.9	21	85	5	55	24	36	4	34	1.77
127383--127420	18	2.1	18	90	9	60	63	23	0	13	1.30

Tables:   1

The End!