Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009192.1 Hibiscus syriacus cultivar Beakdansim tig00112774_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88554

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
496--525
13
2.4
13
94
5
53
43
0
30
26
1.55
12402--12443
22
1.9
22
90
9
68
14
11
4
69
1.34
19491--19532
22
1.9
22
90
9
68
16
9
4
69
1.33
23423--23479
19
2.8
20
80
15
64
3
14
5
77
1.08
24584--24660
33
2.3
33
97
0
145
29
16
25
27
1.97
27708--27881
91
1.9
91
85
0
240
23
25
21
28
1.99
28661--28713
24
2.2
24
86
0
79
58
18
15
7
1.60
28706--28734
15
2.0
15
93
6
51
75
3
20
0
0.94
31674--31847
91
1.9
91
90
0
276
21
26
21
29
1.99
38439--38510
21
3.6
20
90
5
110
34
13
4
47
1.63
39222--39280
25
2.4
24
77
8
64
76
5
8
10
1.15
41756--41791
18
2.0
18
100
0
72
38
22
16
22
1.93
42858--42924
28
2.6
27
80
15
63
64
11
13
10
1.51
44953--44986
17
2.1
16
88
5
50
14
8
0
76
1.01
60586--60645
30
2.0
31
86
3
86
28
8
10
53
1.63
61998--62037
19
2.0
20
85
4
55
22
15
0
62
1.32
64770--64829
30
2.0
31
90
3
95
30
8
8
53
1.60
65738--65789
21
2.6
21
90
6
81
32
13
7
46
1.72
66198--66250
27
2.0
27
85
7
72
24
13
0
62
1.31
67135--67186
19
2.6
21
90
6
81
46
7
13
32
1.72
67860--67895
15
2.4
15
90
0
54
44
0
5
50
1.25
75858--75892
17
2.0
18
88
5
54
62
0
22
14
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76103--76137
8
4.6
8
86
13
56
0
22
0
77
0.78
76097--76160
14
4.6
14
79
16
71
0
20
1
78
0.84
76096--76159
19
3.2
19
81
18
76
0
20
1
78
0.84
76310--78130
909
2.0
908
99
0
3606
31
21
19
27
1.98
78567--78608
16
2.7
15
85
7
57
14
19
0
66
1.25
78952--78991
19
2.0
20
85
4
55
62
0
15
22
1.32
79401--79452
19
2.6
21
84
6
63
48
9
11
30
1.72
83278--83329
19
2.6
21
90
6
81
46
7
13
32
1.72
88016--88067
19
2.6
21
90
6
81
46
7
13
32
1.72

Tables:   1

The End!