genome.fa.s9194.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009194.1 Hibiscus syriacus cultivar Beakdansim tig00112776_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93063

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936--1054	21	5.8	20	78	8	105	36	22	19	21	1.95
930--1054	42	3.0	41	71	12	119	34	23	18	24	1.96
936--1073	21	6.7	20	75	12	75	36	23	18	20	1.94
1022--1246	20	11.4	20	80	9	221	36	26	18	19	1.94
4410--4607	33	5.7	34	75	16	174	46	18	21	13	1.83
4424--4644	52	4.2	52	94	2	374	45	18	21	14	1.85
4424--4644	105	2.1	103	93	3	372	45	18	21	14	1.85
4476--4638	33	4.8	33	74	17	154	45	17	22	14	1.84
4616--4729	52	2.2	51	89	3	174	18	22	18	40	1.91
4653--4749	19	5.4	19	82	15	134	14	21	17	46	1.84
4634--4749	52	2.2	52	96	3	216	13	23	18	44	1.85
4634--4749	19	6.7	18	77	18	113	13	23	18	44	1.85
4634--4749	33	3.3	37	74	20	124	13	23	18	44	1.85
4855--4891	14	2.6	14	91	0	65	45	21	0	32	1.52
6804--6910	19	6.1	19	74	21	99	46	22	18	12	1.82
6841--6897	14	3.7	14	77	20	60	45	22	21	10	1.82
6822--6910	33	2.7	33	94	0	160	47	21	20	11	1.81
6915--7057	19	8.3	18	78	15	103	8	15	27	48	1.74
6915--7040	33	3.8	32	74	11	130	7	15	27	49	1.71
6965--7001	14	2.6	14	100	0	74	8	13	24	54	1.66
7102--7384	93	3.1	93	97	0	532	45	18	12	22	1.83
9073--9169	20	5.2	20	70	18	91	46	17	23	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9120--9176	14	3.7	14	75	20	60	43	22	24	8	1.81
9071--9193	33	3.5	33	88	10	165	46	18	23	11	1.81
9210--9266	14	3.7	14	75	20	60	8	24	22	43	1.81
9194--9274	33	2.5	33	95	0	144	8	22	22	46	1.78
9251--9326	21	3.7	21	83	3	109	11	25	17	46	1.82
9250--9327	41	1.9	41	97	0	147	12	25	16	44	1.83
9406--9476	33	2.2	33	94	0	124	47	16	23	11	1.79
9851--10043	20	9.6	20	83	5	228	19	18	26	35	1.94
11065--11104	20	2.0	21	90	5	64	52	12	0	35	1.39
16252--16417	57	2.9	58	75	14	148	40	3	21	34	1.69
22184--22261	24	3.5	24	69	16	67	56	30	2	10	1.46
22186--22273	43	2.0	43	88	0	131	54	29	2	13	1.51
22202--22248	19	2.6	19	76	6	53	57	31	2	8	1.41
24861--24921	21	3.2	21	65	29	64	31	4	21	42	1.74
24826--24972	35	4.2	36	87	7	187	32	5	19	42	1.74
24826--24969	72	2.1	69	84	7	184	32	5	19	42	1.74
27013--27073	20	3.2	20	88	9	83	13	27	32	26	1.93
27002--27073	10	7.6	9	76	11	54	13	26	30	29	1.94
34399--34437	15	2.6	14	80	11	51	46	0	2	51	1.14
41396--41435	21	1.9	21	89	0	62	10	25	40	25	1.86
41417--41479	21	2.9	21	80	4	72	19	25	34	20	1.96
50803--50866	15	4.6	15	68	18	57	59	0	6	34	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50803--50882	40	2.0	40	100	0	160	60	0	5	35	1.19
53026--53110	15	5.7	15	72	13	59	71	1	11	15	1.20
53031--53110	20	4.0	20	77	11	74	72	1	11	15	1.18
53046--53102	25	2.3	24	82	14	71	73	0	10	15	1.09
53162--53212	22	2.3	21	83	9	66	76	0	9	13	1.02
53172--53242	22	3.2	22	77	15	58	77	1	8	12	1.05
53158--53242	8	9.9	8	75	12	53	76	1	8	14	1.07
54144--54322	89	2.0	89	98	0	349	35	10	19	34	1.86
61593--61635	22	2.0	22	85	0	59	30	4	2	62	1.28
81776--81816	20	2.0	21	95	4	75	36	34	14	14	1.87
89015--89088	38	1.9	38	94	0	130	22	14	17	44	1.86

Tables:   1

The End!