genome.fa.s9197.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009197.1 Hibiscus syriacus cultivar Beakdansim tig00112780_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62007

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4715--4756	17	2.5	17	100	0	84	33	4	33	28	1.78
6882--6941	24	2.3	28	81	16	67	75	3	18	3	1.09
6916--6972	11	5.4	11	76	16	50	77	1	19	1	0.95
6907--6972	31	2.1	30	86	10	89	77	3	18	1	0.98
6905--6964	9	7.2	8	77	9	50	78	3	16	1	0.97
9136--9212	36	2.1	36	82	0	100	27	18	10	44	1.82
9229--9377	36	4.1	36	90	0	226	24	20	15	39	1.91
9353--9444	46	2.0	45	85	6	121	32	15	10	41	1.82
9302--9717	216	1.9	223	84	10	573	27	17	14	39	1.89
9517--9612	36	2.6	36	85	3	120	26	15	16	41	1.88
9555--9680	64	1.9	66	85	4	175	32	15	10	41	1.81
10172--10536	91	4.0	91	90	1	554	36	15	23	24	1.93
11915--11962	24	2.0	26	88	12	75	29	0	10	60	1.30
12100--12160	2	30.5	2	100	0	122	50	0	0	49	1.00
13313--13365	20	2.7	20	96	0	97	37	22	20	18	1.94
13352--13458	20	5.3	20	90	0	160	30	25	18	25	1.98
14293--14346	24	2.2	24	83	0	63	24	14	18	42	1.88
16836--16889	14	3.5	14	73	22	54	44	20	24	11	1.83
16836--16911	33	2.3	34	97	2	145	44	19	23	11	1.84
16849--16915	20	3.7	19	72	22	72	46	19	22	11	1.82
16948--17001	14	3.5	14	73	22	54	11	24	20	44	1.83
16926--17021	33	2.9	34	88	3	140	14	22	18	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17127--17163	14	2.6	14	86	0	56	48	21	0	29	1.50
18562--18654	42	2.2	42	80	3	107	22	17	39	20	1.92
19227--19316	20	4.5	20	94	0	153	21	18	22	37	1.94
19697--19738	6	7.0	6	94	0	75	19	0	64	16	1.30
21227--21298	20	3.6	20	81	10	76	52	22	13	11	1.72
21635--21700	22	3.0	22	90	0	105	21	15	39	24	1.91
21897--21989	20	4.7	20	95	0	168	20	20	21	37	1.94
21879--21989	40	2.8	40	91	5	172	20	20	22	36	1.96
21986--22031	21	2.2	21	88	0	65	36	17	28	17	1.92
26841--26869	13	2.1	14	93	6	51	37	6	0	55	1.27
26837--26872	14	2.5	15	86	13	58	38	8	0	52	1.32
30913--31014	41	2.6	38	76	8	105	38	15	7	38	1.77
31318--31350	2	16.5	2	100	0	66	48	0	0	51	1.00
31506--31608	52	2.0	52	98	0	197	21	23	13	41	1.88
36107--36209	52	2.0	52	98	0	197	21	23	13	41	1.88
45681--45751	31	2.2	32	79	18	78	2	59	1	36	1.21
49672--49883	2	108.5	2	77	4	173	37	0	61	0	1.00

Tables:   1

The End!