genome.fa.s9198.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009198.1 Hibiscus syriacus cultivar Beakdansim tig00112781_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  176433

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9536--9606	31	2.2	32	79	18	78	2	59	1	36	1.21
13530--13742	6	35.8	6	92	1	178	37	0	61	0	0.99
30823--30946	4	30.8	4	74	11	92	20	0	8	70	1.14
30844--30904	27	2.3	26	88	2	86	26	0	4	68	1.09
30847--30946	39	2.5	39	91	3	155	23	0	8	69	1.15
30888--30950	27	2.5	25	80	16	76	17	0	11	71	1.14
30830--30976	30	4.6	31	73	10	111	21	1	8	68	1.25
38228--38260	2	16.5	2	100	0	66	48	0	0	51	1.00
38376--38408	16	2.1	16	100	0	66	36	6	30	27	1.81
38568--41328	452	6.0	452	86	5	3664	36	15	11	37	1.82
41426--44625	468	6.9	467	89	3	4773	37	11	15	36	1.83
42714--44625	467	4.1	467	90	2	2904	37	11	14	36	1.82
44762--44794	16	2.1	16	94	0	57	27	33	3	36	1.72
44900--44925	10	2.6	10	100	0	52	57	7	11	23	1.59
45334--45404	3	23.7	3	100	0	142	33	0	0	66	0.92
48995--49140	45	3.4	44	76	15	114	46	0	2	51	1.12
49026--49083	30	2.0	28	83	6	71	39	0	3	56	1.16
49061--49118	29	2.0	29	83	12	75	46	0	1	51	1.11
49222--49251	15	2.0	15	93	0	51	36	0	0	63	0.95
49312--49385	31	2.3	30	80	15	78	48	1	1	48	1.18
49408--49437	14	2.2	13	94	5	51	53	0	3	43	1.17
49436--49486	25	2.3	23	77	16	54	37	3	0	58	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50550--50599	11	4.4	11	82	9	55	52	0	4	44	1.20
50550--50599	24	2.0	25	88	3	75	52	0	4	44	1.20
50558--50593	14	2.7	13	91	4	54	52	0	2	44	1.15
51959--52023	33	2.0	33	81	6	78	47	3	3	46	1.33
53355--53430	26	2.7	29	80	15	97	3	34	0	61	1.14
53366--53428	26	2.4	26	97	0	117	3	36	0	60	1.13
53366--53428	11	4.7	15	64	28	52	3	36	0	60	1.13
53953--53987	2	17.5	2	100	0	70	51	0	0	48	1.00
57764--57815	24	2.2	24	82	0	59	11	15	25	48	1.78
57785--57815	14	2.2	14	94	0	53	9	12	22	54	1.67
57774--57823	24	2.1	24	96	0	91	10	14	24	52	1.71
57781--57835	24	2.3	24	90	6	85	12	12	18	56	1.67
59372--59432	16	3.8	16	88	0	95	8	13	19	59	1.59
59502--59542	16	2.7	16	85	7	59	12	7	19	60	1.54
62673--62734	6	10.2	6	86	10	90	20	14	16	48	1.81
62673--62734	19	3.4	18	86	8	90	20	14	16	48	1.81
62673--62734	25	2.5	25	94	2	108	20	14	16	48	1.81
64827--64859	2	17.0	2	93	6	59	51	0	0	48	1.00
66922--67033	42	2.7	41	81	5	118	25	23	21	30	1.99
67779--67886	42	2.6	42	79	4	121	25	22	22	29	1.99
66874--68338	214	6.8	214	94	0	2408	31	15	20	32	1.94
68212--68318	42	2.6	42	81	1	117	23	21	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71457--71505	22	2.2	22	85	0	62	28	18	18	34	1.94
72123--72202	36	2.2	36	93	0	133	50	13	13	22	1.77
72151--72215	24	2.7	25	76	7	71	49	16	10	23	1.77
72146--72202	30	1.9	30	92	0	96	49	14	14	22	1.79
72695--73102	187	2.2	186	83	7	504	38	5	8	47	1.58
74387--74427	18	2.4	17	88	12	57	68	0	4	26	1.10
76042--76264	36	6.3	36	73	11	176	41	12	18	26	1.87
76200--76279	21	4.0	21	76	20	100	41	10	18	30	1.83
76372--76601	120	1.9	120	87	0	334	21	19	26	32	1.97
90564--90611	18	2.8	17	81	9	53	72	0	6	20	1.05
92521--92744	106	2.1	106	82	8	269	41	4	3	50	1.41
92659--92691	16	2.1	15	94	5	57	36	0	0	63	0.95
92655--92720	25	2.6	26	81	11	75	45	0	0	54	0.99
92770--92797	2	14.0	2	100	0	56	50	0	0	50	1.00
93750--93782	16	2.1	16	100	0	66	42	24	6	27	1.78
94246--94313	10	6.1	10	72	21	55	11	11	20	55	1.67
98472--98639	49	3.4	49	77	5	153	36	8	16	39	1.78
99953--100007	29	1.9	29	85	3	76	18	9	10	61	1.54
106220--106269	25	2.0	25	88	7	75	48	0	4	48	1.20
112416--112492	39	2.0	39	100	0	154	36	15	18	29	1.92
118842--119041	104	2.0	100	86	5	276	28	9	11	51	1.69
119700--119733	14	2.5	13	86	9	50	44	2	11	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122603--122640	2	19.5	2	94	5	69	50	0	0	50	1.00
123286--123329	10	4.4	10	82	0	61	13	9	13	63	1.51
123394--123441	22	2.1	24	84	7	64	47	12	2	37	1.53
123576--123621	23	2.0	23	86	0	65	8	10	21	58	1.58
128874--128914	20	2.1	20	86	4	57	34	0	2	63	1.08
128998--129055	23	2.5	23	81	16	66	37	3	5	53	1.40
129454--130027	112	5.1	112	95	0	981	45	13	14	25	1.82
129899--130353	183	2.5	182	92	0	732	43	13	15	27	1.84
130795--130866	23	3.1	23	93	0	126	33	22	8	36	1.84
130785--130878	46	2.0	46	87	0	134	38	18	6	37	1.76
134640--134735	43	2.3	44	78	8	110	21	13	16	47	1.81
134949--135008	21	2.8	22	85	5	70	46	0	0	53	1.00
135003--135037	18	1.9	18	88	0	52	60	0	0	40	0.97
135001--135051	23	2.2	23	92	0	84	54	0	0	45	0.99
134943--135103	82	1.9	83	80	12	188	48	0	0	50	1.05
134958--135080	23	4.8	26	72	15	78	47	0	0	52	1.00
134972--135138	29	6.0	26	71	21	76	47	0	0	52	1.05
134981--135181	26	7.6	28	68	25	104	49	0	0	50	1.04
135098--135182	15	5.9	14	70	15	57	52	0	0	47	1.00
134979--135150	28	6.2	29	72	19	118	50	0	0	49	1.05
135084--135240	49	3.2	50	75	16	155	48	0	2	49	1.15
135361--135405	14	3.1	14	78	6	54	35	17	6	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135359--135403	15	3.1	15	77	6	56	31	17	8	42	1.80
138735--138779	23	2.0	23	90	0	72	42	8	15	33	1.78
138696--138944	87	2.9	87	93	0	426	41	9	13	34	1.77
138826--138871	23	2.0	23	86	0	65	41	8	10	39	1.71
139517--139601	30	2.8	31	80	15	83	48	1	1	49	1.16
139528--139613	14	6.2	14	69	11	52	47	1	1	50	1.16
140296--140342	16	3.0	16	75	12	53	51	0	0	48	1.00
140291--140394	30	3.4	30	75	13	90	48	0	1	49	1.19
141093--141165	28	2.4	31	78	17	82	47	2	0	49	1.15
141138--141203	27	2.6	26	75	20	68	51	3	1	43	1.26
139362--142311	786	3.8	771	89	4	4288	38	7	7	45	1.62
141839--141921	37	2.3	37	80	14	93	50	0	1	48	1.08
141892--141962	30	2.3	31	75	13	76	46	1	0	52	1.09
141951--141997	14	3.3	14	77	14	51	57	2	2	38	1.23
140837--142311	798	1.9	789	90	3	2388	37	7	7	47	1.61
142379--142432	21	2.6	21	97	2	101	64	16	9	9	1.47
143728--143761	2	17.0	2	100	0	68	50	0	0	50	1.00
145494--145527	15	2.2	16	89	5	52	64	0	2	32	1.08
145516--145540	12	2.1	12	100	0	50	68	0	0	32	0.90
155497--155559	2	31.5	2	100	0	126	50	0	0	49	1.00
167166--167192	2	13.5	2	100	0	54	51	0	0	48	1.00
167382--167465	31	2.7	31	94	0	141	41	14	11	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171831--171870	17	2.4	17	95	0	71	25	12	25	37	1.91

Tables:   1

The End!