Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009199.1 Hibiscus syriacus cultivar Beakdansim tig00112782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83958

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2963--3076
16
7.4
16
69
11
60
51
27
12
8
1.68
3166--3226
3
19.7
3
90
6
95
31
3
0
65
1.09
3576--3682
44
2.4
45
81
7
121
41
22
15
20
1.90
3672--3787
31
3.7
31
77
5
108
37
28
13
20
1.91
4793--4837
20
2.1
20
84
12
54
33
2
15
48
1.57
4799--4837
20
1.9
21
89
5
62
30
2
17
48
1.61
16105--16217
51
2.2
51
81
9
124
17
30
27
24
1.97
16509--16556
16
3.1
16
81
3
62
25
2
4
68
1.18
19135--19228
31
3.0
31
95
3
163
18
19
24
38
1.93
20360--20413
18
3.1
17
91
5
81
29
22
24
24
1.99
22094--22139
18
2.6
17
80
10
56
58
2
6
32
1.36
22121--22173
23
2.3
24
78
15
58
58
1
0
39
1.09
27841--27888
23
2.1
23
88
0
69
35
12
18
33
1.89
28224--28262
20
2.0
20
89
0
60
48
10
15
25
1.76
28260--28311
21
2.5
20
84
9
68
42
21
1
34
1.64
28265--28335
23
3.2
22
82
8
81
39
21
5
33
1.77
28736--28822
39
2.2
39
95
0
156
17
13
20
48
1.81
29127--29837
184
3.9
184
97
0
1307
32
16
15
35
1.90
29127--29837
367
1.9
368
96
0
1316
32
16
15
35
1.90
31285--31371
3
29.0
3
77
0
84
24
34
5
35
1.79
31285--31386
18
5.7
18
79
0
87
22
34
6
36
1.81
31293--31383
42
2.2
42
91
0
146
21
35
7
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32842--34845
197
10.1
199
95
2
3616
31
15
15
37
1.88
32842--34845
396
5.1
399
96
2
3744
31
15
15
37
1.88
34923--34971
19
2.6
19
93
0
80
57
10
2
30
1.43
36755--36820
33
2.0
33
87
0
96
24
45
1
28
1.62
39129--39175
20
2.4
19
79
10
58
19
17
8
55
1.67
39296--39341
20
2.3
20
89
10
76
17
17
10
54
1.70
42596--42647
20
2.4
22
78
9
63
53
0
7
38
1.30
51050--51129
37
2.1
39
81
9
94
30
17
7
45
1.76
59848--59895
24
2.0
24
100
0
96
37
8
4
50
1.52
77438--77471
3
11.3
3
100
0
68
64
0
0
35
0.94
78432--78465
9
3.9
9
84
7
52
61
2
0
35
1.11
78428--78466
17
2.4
17
95
4
71
61
5
0
33
1.18
80537--80562
12
2.2
12
100
0
52
38
11
7
42
1.70

Tables:   1

The End!