genome.fa.s920.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000920.1 Hibiscus syriacus cultivar Beakdansim tig00001834_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95764

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4539--4573	2	17.5	2	100	0	70	48	0	0	51	1.00
5030--5129	23	4.3	23	80	1	101	31	22	23	24	1.99
5365--5405	22	1.9	21	85	5	55	65	4	0	29	1.13
6882--7719	226	3.7	227	86	3	1112	31	15	12	39	1.85
7808--7864	21	2.6	22	97	2	107	38	12	14	35	1.83
13616--13797	3	62.3	3	72	22	106	29	3	1	65	1.20
13633--13797	57	3.2	53	71	24	127	27	4	1	66	1.21
13821--13857	2	18.5	2	100	0	74	48	0	0	51	1.00
13945--13988	2	22.5	2	95	4	81	47	0	0	52	1.00
14125--14164	20	2.0	21	85	5	55	17	0	10	72	1.11
14184--14230	13	3.6	13	78	21	53	14	6	0	78	0.93
14206--14273	8	8.6	8	75	10	52	13	7	1	77	1.03
14209--14287	10	7.6	10	69	11	52	12	6	1	79	0.97
14210--14285	16	4.4	18	76	17	65	13	6	1	78	0.99
14203--14282	31	2.7	29	81	9	90	12	7	1	78	1.01
14201--14296	48	2.0	49	84	13	128	13	6	2	78	1.04
14255--14318	6	10.2	6	73	26	53	20	1	1	76	0.95
14243--14362	37	3.2	38	70	19	110	16	6	2	74	1.14
14934--15535	43	14.2	41	73	15	336	26	15	6	51	1.68
14874--15535	85	7.9	84	72	14	372	26	15	6	51	1.68
15040--15437	207	1.9	207	80	10	465	25	15	6	51	1.68
15289--15535	42	5.7	43	78	9	186	28	14	4	51	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16548--16602	25	2.2	26	83	3	67	69	1	7	21	1.23
16649--16734	43	2.0	41	80	15	93	69	2	9	18	1.26
16743--16824	7	11.3	7	70	14	51	76	1	7	14	1.05
16722--16778	25	2.3	24	82	8	62	77	0	8	14	0.99
16893--16943	3	18.7	3	77	18	58	72	0	1	25	0.95
16893--16943	13	3.7	15	75	19	58	72	0	1	25	0.95
16896--16944	5	9.2	5	93	2	62	73	0	2	24	0.94
17182--17206	12	2.1	12	100	0	50	32	60	0	8	1.26
19010--19050	21	1.9	21	85	5	55	24	36	4	34	1.77
19324--19371	17	3.0	15	77	14	51	56	27	2	14	1.50
20635--20660	12	2.2	12	100	0	52	23	0	53	23	1.46
26888--26929	18	2.4	18	76	4	50	54	4	16	23	1.61
27830--27894	19	3.4	19	80	6	60	72	1	1	24	1.02
27840--27905	12	5.1	12	84	14	55	69	0	1	28	0.97
27865--27919	3	19.3	3	85	10	80	67	1	0	30	1.01
27865--27940	9	9.1	8	74	18	50	64	3	0	31	1.12
31284--31341	22	2.6	23	88	2	91	20	27	27	24	1.99
35109--35148	21	1.9	21	85	10	55	35	10	2	52	1.48
37416--37589	34	4.9	35	78	12	160	48	6	1	43	1.38
38353--39124	85	9.1	85	84	1	911	26	17	20	36	1.94
44214--44249	8	4.5	8	90	10	56	88	0	0	11	0.50
44274--44328	19	2.8	19	82	15	60	78	1	10	9	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44293--44357	23	2.7	23	80	7	67	75	3	9	12	1.15
44372--44406	8	4.2	8	89	7	52	65	0	2	31	1.07
44548--44601	12	4.8	11	78	13	56	75	3	0	20	0.95
45709--45743	5	7.0	5	100	0	70	60	0	0	40	0.97
45783--45881	35	2.8	34	74	17	94	51	6	1	41	1.33
45860--45906	21	2.2	21	92	7	78	48	4	4	42	1.42
45881--46015	37	3.5	37	79	16	143	45	5	2	45	1.43
45881--46015	38	3.5	37	80	13	150	45	5	2	45	1.43
47418--47444	2	13.5	2	100	0	54	51	0	0	48	1.00
59097--59160	22	3.0	23	78	13	66	28	14	32	25	1.94
59114--59169	22	2.7	20	78	10	58	30	16	30	23	1.96
59208--59258	22	2.3	22	93	0	84	37	11	19	31	1.88
59695--60033	45	7.5	45	91	0	516	37	11	20	29	1.88
62314--62362	19	2.5	20	78	18	57	36	2	22	38	1.66
62524--62627	28	3.7	28	94	0	172	20	16	25	37	1.93
62939--62988	9	5.6	9	87	0	64	58	2	10	30	1.42
62953--62986	3	11.3	3	93	0	59	61	0	2	35	1.11
62993--63700	6	119.3	6	96	3	1319	33	0	16	50	1.46
64781--65038	20	12.6	20	71	9	99	39	18	22	20	1.93
64904--65036	40	3.2	40	82	6	176	37	16	23	22	1.93
64885--65025	43	3.3	43	83	5	198	36	17	24	22	1.95
65141--65184	6	7.5	6	97	2	81	31	52	15	0	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65866--65910	6	7.7	6	97	2	83	0	17	51	31	1.46
72133--72172	21	1.9	21	90	10	64	17	15	0	67	1.23
75119--75300	95	1.9	95	90	2	294	31	19	18	30	1.96
76651--76731	36	2.2	37	88	2	119	30	19	12	37	1.89
76746--76833	36	2.4	36	87	7	133	27	20	14	37	1.92
76652--76917	102	2.6	102	95	0	478	28	18	13	40	1.88
76956--77607	324	2.0	327	93	2	1116	39	14	14	31	1.86
78094--78165	37	1.9	36	81	10	83	19	6	1	72	1.15
78237--78261	4	6.2	4	100	0	50	24	0	0	76	0.80
78326--78358	12	2.8	12	90	4	50	9	3	0	87	0.63
78326--78358	11	2.9	11	95	4	57	9	3	0	87	0.63
82364--82406	20	2.2	20	87	8	61	32	0	34	32	1.58
86746--86784	19	2.2	18	86	9	53	25	20	25	28	1.99
86755--86932	84	2.1	84	94	0	311	26	19	25	28	1.99
86854--87009	65	2.4	63	83	7	179	30	18	21	28	1.97
92529--92568	21	1.9	21	85	10	55	32	5	5	57	1.42
94471--94623	65	2.4	64	87	3	200	30	20	22	27	1.98

Tables:   1

The End!