genome.fa.s9201.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009201.1 Hibiscus syriacus cultivar Beakdansim tig00112785_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119838

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4476--4557	29	2.8	29	92	1	128	32	14	10	41	1.81
9354--9663	51	6.1	51	77	11	291	27	10	52	8	1.65
9321--9729	84	4.9	83	87	6	460	27	11	53	8	1.64
9297--9696	117	3.4	117	85	6	474	26	11	53	8	1.64
9627--9682	15	3.5	15	72	13	58	25	17	51	5	1.66
9297--9729	201	2.2	201	93	0	760	27	11	53	8	1.64
9297--9729	51	8.6	51	73	15	237	27	11	53	8	1.64
9297--9729	33	12.9	33	75	9	256	27	11	53	8	1.64
12699--12889	38	5.2	34	73	17	102	42	3	9	43	1.54
12803--12914	35	3.0	38	85	6	131	46	4	7	41	1.51
12803--12889	38	2.2	40	89	4	133	48	2	8	41	1.45
14264--14313	17	2.9	16	82	11	55	16	12	4	68	1.35
14396--14466	15	4.7	15	77	8	63	22	1	2	73	1.05
14532--14558	6	4.5	6	100	0	54	44	0	0	55	0.99
15019--15049	12	2.6	12	100	0	62	48	16	0	35	1.46
26294--26371	31	2.5	31	89	0	120	32	14	29	24	1.94
26578--26634	16	3.4	16	72	9	51	36	0	12	50	1.40
26935--26986	17	3.2	17	75	10	54	32	3	13	50	1.60
27566--27636	2	35.5	2	100	0	142	49	0	0	50	1.00
27933--27986	20	2.6	21	82	2	74	27	24	16	31	1.96
27974--28282	20	15.4	20	83	5	347	35	25	18	20	1.95
27974--28282	80	3.9	80	88	2	399	35	25	18	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28974--29020	24	2.0	24	87	8	69	25	14	21	38	1.92
29195--29219	12	2.1	12	100	0	50	72	0	28	0	0.86
30164--30642	93	5.2	93	98	0	931	46	18	12	22	1.83
32340--32436	20	5.2	20	72	18	100	46	17	24	11	1.81
32338--32402	21	3.1	21	82	4	96	47	15	26	10	1.78
32387--32443	14	3.7	14	75	20	60	43	22	24	8	1.81
32338--32460	33	3.5	33	88	8	156	46	19	24	9	1.80
32477--32533	14	3.7	14	75	20	60	8	24	22	43	1.81
32461--32540	33	2.4	33	95	0	142	8	21	22	47	1.78
32521--32594	21	3.5	21	80	7	96	14	20	17	47	1.83
32674--32744	33	2.2	33	94	0	124	47	16	23	11	1.79
33124--33275	20	7.6	20	88	2	207	19	19	27	33	1.96
33269--33316	20	2.3	20	85	3	69	35	14	22	27	1.93
36954--37316	182	2.0	180	98	1	708	25	19	17	36	1.94
41907--41961	4	13.8	4	88	0	83	45	23	0	30	1.53
41907--41961	20	2.8	20	97	0	101	45	23	0	30	1.53
45435--45489	13	4.0	13	82	15	58	40	0	7	52	1.29
50765--50812	22	2.2	22	81	7	53	37	4	4	54	1.39
53709--53735	4	6.8	4	100	0	54	0	74	0	25	0.83
55818--55842	6	4.2	6	100	0	50	36	16	0	48	1.46
56244--56295	24	2.1	26	79	13	65	53	5	0	40	1.25
56406--56489	44	1.9	44	90	0	132	50	1	2	46	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56444--56499	17	3.2	17	78	14	60	51	1	0	46	1.11
56416--56501	44	1.9	44	85	2	118	50	1	1	47	1.16
56473--56531	14	4.4	14	73	16	61	57	0	3	38	1.15
56739--56794	27	1.9	28	86	13	78	57	1	1	39	1.20
57196--57339	59	2.4	60	81	3	166	36	18	4	40	1.72
57790--58069	20	13.9	20	76	11	137	38	22	20	18	1.94
57871--58082	62	3.5	62	81	5	211	35	24	21	18	1.96
57792--58082	62	4.8	61	76	11	181	38	23	20	17	1.93
57871--58082	20	10.4	20	82	9	196	35	24	21	18	1.96
58195--58251	6	9.5	6	100	0	114	33	50	15	0	1.44
59006--59032	6	4.5	6	100	0	54	0	14	51	33	1.43
59143--59232	20	4.4	20	79	8	101	17	21	25	35	1.95
59156--59236	40	2.0	42	92	4	139	18	22	23	35	1.95
59223--59276	20	2.7	20	91	0	81	12	20	16	50	1.78
59176--59294	20	5.9	19	71	14	78	17	20	20	42	1.90
60094--60122	6	5.0	6	95	4	51	34	31	0	34	1.58
62869--62926	27	2.1	28	84	9	75	44	13	17	24	1.85
62926--62965	20	2.0	20	90	0	62	20	15	20	45	1.86
63010--63055	12	3.6	12	81	16	56	45	17	19	17	1.85
63016--63056	12	3.1	13	80	19	57	46	14	17	21	1.84
65361--65400	21	1.9	21	94	0	71	30	15	7	47	1.72
65395--65489	34	2.9	34	93	3	158	31	6	15	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65480--65534	13	4.2	13	75	13	58	34	3	12	49	1.59
65932--65987	15	3.6	15	79	9	67	32	12	12	42	1.80
65951--65984	18	1.9	18	94	5	61	38	11	11	38	1.79
66079--66110	16	2.0	17	88	11	50	43	21	21	12	1.86
69636--69664	2	14.5	2	100	0	58	51	48	0	0	1.00
81756--81820	23	2.8	23	79	11	78	60	1	0	38	1.07
81813--81858	3	15.7	3	88	4	67	63	0	2	34	1.07
84722--84754	3	10.7	3	93	6	57	66	0	0	33	0.92
85535--86661	106	11.0	106	91	3	1597	22	18	25	33	1.97
86308--86661	94	3.8	94	95	0	627	22	18	24	33	1.97
89487--89526	20	2.0	20	95	0	71	15	25	22	37	1.93
92467--92505	3	12.7	3	94	5	69	66	0	0	33	0.92
94395--94452	23	2.5	23	77	0	62	50	15	24	10	1.75
95566--95612	17	3.1	15	77	14	51	53	29	10	6	1.60
97297--97339	23	1.9	22	85	4	59	25	0	4	69	1.07
97735--97773	19	2.1	19	85	9	53	56	0	0	43	0.99
99053--99087	3	11.7	3	100	0	70	65	0	0	34	0.93
101036--101096	24	2.7	23	94	5	106	29	9	8	52	1.63
101036--101106	24	3.1	22	75	20	65	30	8	7	53	1.58
102889--102938	25	2.0	25	100	0	100	32	8	16	44	1.76
114048--114084	16	2.3	16	95	0	65	37	27	27	8	1.84

Tables:   1

The End!