genome.fa.s9204.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009204.1 Hibiscus syriacus cultivar Beakdansim tig00112790_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147273

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4924--5017	40	2.3	41	90	5	156	38	18	24	19	1.93
4927--5017	20	4.6	20	75	8	87	37	18	25	18	1.94
5006--5098	20	4.7	20	78	5	80	34	23	18	23	1.96
5003--5079	41	1.9	40	83	2	100	40	20	16	22	1.91
5048--5094	19	2.4	20	89	3	69	27	27	19	25	1.99
5607--5673	19	3.5	19	83	2	80	49	23	16	10	1.77
5669--5738	19	3.7	19	98	0	131	11	21	21	45	1.83
5669--5776	38	3.0	37	84	9	118	11	25	21	42	1.85
5721--5810	33	2.6	33	89	5	126	13	26	20	40	1.89
7851--7917	21	3.2	21	66	6	55	23	35	20	19	1.95
9256--9290	13	2.6	14	90	4	54	28	0	25	45	1.54
9243--9291	13	3.7	14	76	10	50	26	0	22	51	1.49
9396--9466	18	4.1	18	77	17	78	45	19	21	14	1.85
9396--9460	19	3.7	19	78	17	70	44	21	23	10	1.83
9470--9564	34	2.8	33	95	3	172	12	24	18	44	1.85
11823--11847	12	2.1	12	100	0	50	0	28	0	72	0.86
13304--13340	14	2.6	14	86	0	56	48	21	0	29	1.50
13888--13923	13	2.7	13	86	4	54	50	22	0	27	1.50
12934--15341	581	4.1	589	97	1	4590	37	19	12	31	1.88
14472--14508	14	2.6	14	86	0	56	48	21	0	29	1.50
15060--15096	14	2.6	14	86	0	56	48	21	0	29	1.50
16949--17024	20	3.9	19	91	3	98	34	22	26	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16946--17036	40	2.3	39	75	5	103	38	21	24	15	1.92
17025--17082	14	3.9	14	79	16	71	48	25	17	8	1.75
17008--17087	32	2.4	33	93	4	135	47	23	18	10	1.79
17094--17189	19	5.6	18	71	22	75	11	18	22	46	1.81
17117--17173	14	3.8	14	73	24	53	8	14	26	50	1.71
17099--17189	32	2.8	33	93	3	157	10	17	23	48	1.79
17174--17228	20	2.8	19	83	8	65	16	23	23	36	1.94
17700--17744	18	2.5	18	85	0	63	15	15	42	26	1.87
19052--19105	20	2.8	20	80	2	65	48	22	16	12	1.80
19339--19382	22	2.0	22	90	0	70	18	13	45	22	1.84
19568--19661	20	4.7	20	80	2	89	23	18	24	34	1.96
19588--19723	41	3.3	42	78	5	118	20	20	20	38	1.94
19548--19662	20	5.7	20	78	5	88	23	17	23	35	1.95
19651--19743	21	4.6	20	79	4	105	18	23	18	39	1.92
19651--19746	41	2.3	41	96	0	174	18	22	17	40	1.91
37817--37843	2	13.5	2	100	0	54	48	0	0	51	1.00
41604--41636	2	17.0	2	87	6	50	48	0	0	51	1.00
41594--41635	19	2.2	19	86	4	57	54	0	0	45	0.99
43957--44029	35	1.9	36	84	13	94	41	17	13	27	1.88
44036--44134	51	1.9	51	83	0	126	44	4	30	21	1.70
55909--55942	17	2.1	16	88	5	50	76	0	8	14	1.01
57662--57703	21	2.0	21	85	4	57	38	14	2	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57664--57707	19	2.2	21	84	8	56	36	15	2	45	1.59
59718--59787	24	3.0	23	77	10	70	60	0	0	40	0.97
59972--60057	36	2.4	35	81	7	93	45	2	2	50	1.27
62578--62613	15	2.4	15	100	0	72	11	50	22	16	1.77
63345--63424	3	26.3	3	92	7	135	66	0	0	33	0.92
67540--67576	3	12.7	3	94	5	67	32	0	0	67	0.91
68495--68519	2	12.5	2	100	0	50	52	0	0	48	1.00
84732--84794	2	32.0	2	96	3	119	50	0	0	49	1.00
85617--85687	21	3.4	21	98	0	133	26	15	29	28	1.96
85829--85864	10	3.3	11	92	7	56	27	55	16	0	1.42
85833--85867	5	6.6	5	96	3	52	25	54	20	0	1.45
91572--91696	31	4.0	31	89	2	180	40	21	16	21	1.91
92431--92483	20	2.7	20	90	0	88	28	33	16	20	1.95
93842--93998	64	2.4	61	78	11	161	34	19	22	22	1.97
93986--94049	20	2.9	22	79	13	78	32	20	20	26	1.97
97885--98037	64	2.4	64	84	4	184	33	18	23	23	1.97
101366--101438	3	25.0	3	91	5	123	32	0	1	65	1.01
102026--102078	24	2.2	25	83	10	74	77	13	7	1	1.06
102040--102106	6	11.3	6	79	3	64	79	4	16	0	0.90
103212--103279	15	4.5	15	81	0	82	42	2	4	50	1.37
109611--109793	92	2.0	92	96	0	339	26	14	16	42	1.86
114205--114309	15	6.8	16	68	16	53	69	2	1	25	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115536--115623	38	2.3	39	82	11	110	51	6	0	42	1.28
115598--115662	28	2.3	28	97	0	121	43	6	0	50	1.27
115626--115913	39	7.6	38	88	5	365	44	10	2	43	1.51
115765--115816	26	2.0	26	85	7	70	46	9	1	42	1.47
116024--116051	2	14.0	2	100	0	56	50	0	0	50	1.00
120709--120745	13	2.8	13	95	0	65	0	8	13	78	0.96
121253--121328	3	25.7	3	97	2	145	65	0	0	34	0.93
121528--121887	134	2.7	134	87	1	497	22	19	32	25	1.97
121767--121876	40	2.7	40	84	7	141	20	20	36	21	1.95
121895--121991	28	3.4	28	82	15	101	44	12	16	26	1.83
121993--122181	66	2.9	62	75	11	164	37	14	19	28	1.91
122987--123062	28	2.7	27	86	10	100	48	13	7	30	1.70
122990--123067	29	2.8	29	84	11	108	46	12	7	33	1.71
122792--123106	118	2.6	116	80	8	321	42	11	14	31	1.81
123298--123384	36	2.4	36	76	3	95	34	11	19	34	1.88
123298--123397	36	2.8	36	76	3	94	38	11	18	33	1.85
123238--123562	167	1.9	166	82	7	408	38	12	16	32	1.86
123446--123604	36	4.4	36	79	10	135	37	13	17	32	1.88
123470--123604	36	3.8	35	81	10	157	34	13	18	33	1.90
130460--130494	13	2.7	13	95	0	61	0	8	8	82	0.83
131005--131056	3	17.7	3	96	4	97	65	0	0	34	0.93
137635--137672	20	1.9	20	100	0	76	36	10	28	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137822--137891	22	3.5	22	67	27	64	45	4	1	48	1.30
137828--137915	37	2.4	37	90	1	140	43	4	1	51	1.29
138369--138400	15	2.1	16	88	11	50	53	6	6	34	1.51
139481--139510	15	2.0	15	93	0	51	70	0	0	30	0.88
141324--141408	3	27.7	3	68	17	50	58	2	1	37	1.18
141347--141636	5	56.0	5	72	22	171	55	5	1	37	1.33
141346--141632	38	7.6	38	69	21	149	55	5	1	37	1.33
141347--141645	27	11.6	26	72	21	124	54	5	1	37	1.34
141460--141690	2	120.0	2	69	21	147	52	5	1	40	1.34
141339--141619	89	3.2	86	78	16	253	55	4	1	38	1.32
141334--141690	84	4.3	86	73	20	239	53	5	1	38	1.36
141480--141688	31	6.8	33	70	22	77	52	5	1	40	1.35
145283--145405	51	2.4	51	85	5	151	16	34	27	21	1.94

Tables:   1

The End!