genome.fa.s9206.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009206.1 Hibiscus syriacus cultivar Beakdansim tig00112792_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160838

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12396--12468	3	25.0	3	80	5	87	58	0	0	41	0.98
12396--12468	21	3.6	21	85	3	96	58	0	0	41	0.98
16687--16819	30	4.4	30	96	0	239	32	23	20	24	1.98
16793--16886	31	3.1	30	75	4	89	30	23	18	27	1.97
16687--16844	60	2.6	60	89	1	217	33	24	19	22	1.97
16802--16897	31	3.1	30	74	12	88	32	20	19	27	1.97
17952--18112	64	2.5	63	80	5	189	24	24	19	31	1.98
19015--19057	21	2.0	21	81	0	50	27	30	25	16	1.97
19085--19123	20	2.0	20	89	0	60	23	33	28	15	1.95
19950--20044	31	3.1	30	71	14	79	27	18	21	32	1.97
20033--20206	30	5.8	30	97	0	321	24	18	22	33	1.97
22283--22352	36	1.9	36	88	5	106	15	21	35	27	1.94
22283--22344	18	3.4	18	95	0	106	14	22	33	29	1.94
23066--23173	51	2.1	51	91	0	180	36	3	11	49	1.56
29450--29489	20	2.0	21	90	5	64	47	0	0	52	1.00
35990--36057	28	2.3	29	87	7	93	19	11	19	50	1.78
37572--37616	20	2.2	20	96	0	81	17	24	31	26	1.97
37864--37909	20	2.3	20	80	0	56	26	23	17	32	1.97
49063--49365	76	3.7	82	80	11	308	36	18	14	30	1.91
49224--49404	76	2.4	76	89	0	272	37	19	16	26	1.93
54362--54402	16	2.5	16	92	4	64	19	0	2	78	0.87
63675--63709	10	3.2	11	88	12	54	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63935--64011	29	2.7	29	78	8	77	29	2	14	53	1.54
64104--64161	30	1.9	31	85	3	82	48	8	15	27	1.74
68054--68078	11	2.3	11	100	0	50	24	8	8	60	1.52
70135--70193	2	32.0	2	74	16	56	50	0	0	49	1.00
70147--70177	7	4.4	7	95	0	53	51	0	0	48	1.00
70314--70380	32	2.1	32	97	0	125	19	23	7	49	1.74
70906--70946	2	21.0	2	95	5	75	48	0	0	51	1.00
73475--73523	17	2.9	17	78	6	55	44	0	0	55	0.99
73541--73577	2	19.0	2	94	5	67	48	0	0	51	1.00
78515--78560	24	1.9	24	86	0	65	34	8	8	47	1.65
84823--84849	2	13.5	2	100	0	54	51	0	0	48	1.00
96433--96557	34	3.8	34	71	19	111	42	8	16	32	1.78
96914--96956	18	2.5	17	85	7	61	25	4	2	67	1.22
98668--98700	5	6.6	5	100	0	66	18	0	0	81	0.68
100028--100066	8	5.0	8	84	6	53	10	17	12	58	1.61
101185--101232	12	4.1	11	78	10	51	81	4	14	0	0.84
101185--101278	8	11.5	8	68	8	64	78	6	12	2	1.02
101220--101288	25	2.9	23	78	19	70	75	7	14	2	1.13
101226--101278	25	2.1	25	86	13	74	77	7	11	3	1.10
101915--101985	22	3.2	22	93	0	115	35	22	14	28	1.93
102903--103184	36	8.0	36	79	8	312	25	19	14	40	1.89
102861--103184	72	4.6	73	76	10	239	26	19	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102959--103144	102	1.8	102	89	2	293	26	18	13	41	1.88
102923--103247	138	2.4	137	85	2	463	27	19	12	40	1.88
103144--103299	67	2.3	66	84	5	197	32	21	8	38	1.83
103920--104685	105	7.3	105	90	2	1096	34	26	17	21	1.96
105234--105358	34	3.8	34	71	19	111	42	9	15	32	1.79
105715--105757	18	2.5	17	85	7	61	25	4	2	67	1.22
107106--107206	37	2.8	36	87	3	130	38	13	15	31	1.87
107106--107206	36	2.8	36	86	3	130	38	13	15	31	1.87
107617--107700	11	7.3	11	71	19	55	34	3	2	59	1.28
107649--107691	15	2.7	15	78	7	50	37	2	0	60	1.10
107871--107919	24	2.2	24	82	10	59	26	6	2	65	1.27
111241--111299	27	2.2	27	80	14	68	77	6	13	1	1.03
112832--113110	36	7.9	36	78	9	279	25	18	13	41	1.88
112790--113110	73	4.5	73	74	10	224	26	19	14	39	1.90
112857--112918	21	3.2	20	65	25	53	29	17	12	40	1.87
112830--113077	102	2.4	103	83	8	297	26	18	14	41	1.88
112991--113102	37	3.1	36	83	8	147	22	19	15	42	1.88
112852--113177	138	2.4	138	83	1	429	27	19	12	40	1.88
113850--114303	106	4.3	105	83	5	515	33	24	19	22	1.97
113850--114303	206	2.2	210	82	8	532	33	24	19	22	1.97
114764--114833	36	1.9	37	91	8	117	41	15	15	27	1.88
115275--115360	11	7.3	11	72	21	50	34	3	2	59	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115529--115562	16	2.1	16	88	0	50	32	5	0	61	1.20
118215--118275	22	2.8	22	74	0	68	34	24	19	21	1.96
145164--145200	19	2.0	18	89	5	56	27	10	13	48	1.75
147286--147367	38	2.1	38	84	13	105	37	3	12	46	1.59
147688--147745	26	2.3	26	80	16	68	56	1	1	39	1.19
154562--154704	49	2.9	48	81	9	164	20	22	13	44	1.86
154583--154704	48	2.5	49	89	1	174	19	25	14	40	1.90
157456--157493	19	2.0	19	94	0	67	26	18	36	18	1.94

Tables:   1

The End!