genome.fa.s9207.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009207.1 Hibiscus syriacus cultivar Beakdansim tig00112793_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66797

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1155--1192	18	2.1	18	100	0	76	21	28	10	39	1.86
5019--5106	24	3.7	24	80	3	97	20	13	15	50	1.78
7809--8459	182	3.5	180	86	3	852	22	15	29	32	1.95
7578--8459	375	2.4	378	85	6	1247	23	15	29	31	1.95
8654--8890	84	2.8	83	83	3	269	24	16	24	34	1.96
9413--9532	32	3.8	32	89	0	177	31	21	15	30	1.95
14014--14194	63	2.9	63	92	0	290	40	14	18	25	1.90
15580--15610	16	1.9	16	93	0	53	80	3	3	12	0.95
15961--16058	20	4.8	20	77	3	88	36	23	18	21	1.95
15902--16058	41	3.9	41	70	11	126	38	25	17	18	1.93
16045--16215	20	8.6	20	84	5	107	35	26	18	20	1.95
16025--16234	60	3.5	58	80	7	208	37	25	17	20	1.94
16079--16234	20	7.8	20	87	4	174	35	25	17	21	1.95
16045--16234	40	4.8	40	86	5	208	36	25	17	20	1.94
16916--16962	24	2.0	24	87	8	69	25	14	21	38	1.92
17136--17160	12	2.1	12	100	0	50	72	0	28	0	0.86
19440--19694	19	14.7	19	76	19	272	45	18	21	13	1.84
19440--19529	34	2.7	33	88	6	128	46	20	20	13	1.83
19440--19604	33	4.8	33	75	17	158	46	18	21	13	1.83
19468--19694	52	4.3	52	87	11	347	45	17	22	14	1.84
19507--19688	71	2.6	71	93	4	311	46	17	21	13	1.83
19526--19688	33	4.8	33	91	7	263	46	17	22	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19684--19786	19	5.6	19	83	13	144	15	23	17	43	1.87
19893--19929	14	2.6	14	91	0	65	45	21	0	32	1.52
21898--21954	14	3.7	14	77	20	60	47	22	19	10	1.80
21879--21971	33	2.8	33	91	0	159	48	21	19	10	1.79
21842--21976	19	7.6	19	76	16	119	46	23	18	11	1.81
21972--22030	19	3.4	19	73	22	74	6	16	30	45	1.74
22021--22077	14	3.7	14	75	20	60	8	24	22	43	1.81
22002--22123	19	6.9	19	70	19	84	9	22	22	44	1.82
21972--22142	66	2.4	70	81	12	190	9	22	23	44	1.82
21972--22123	33	4.4	33	89	6	180	9	21	24	44	1.81
22215--22285	33	2.2	33	94	0	124	47	16	23	11	1.79
22467--22521	22	2.5	22	81	0	74	20	16	40	23	1.91
22668--22861	20	9.6	20	79	5	194	20	20	24	35	1.96
22668--22861	60	3.2	60	82	0	235	20	20	24	35	1.96
23290--23389	29	3.5	29	87	2	130	22	9	24	45	1.81
23348--23414	29	2.3	29	84	0	80	25	7	23	43	1.80
30635--30673	18	2.2	18	100	0	78	17	48	23	10	1.78
30690--30772	29	2.9	29	90	3	132	24	9	21	44	1.82
36474--36512	1	39.0	1	100	0	78	0	0	0	100	0.00
47748--47792	19	2.4	19	85	7	56	55	0	2	42	1.12
48293--48340	15	3.2	15	87	0	69	8	64	16	10	1.48
49200--49226	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51545--51648	33	3.2	33	94	1	174	45	16	7	30	1.75
51643--51684	21	2.0	21	95	0	75	47	7	14	30	1.71
57938--57962	13	1.9	13	100	0	50	48	8	24	20	1.76
58619--58666	22	2.2	21	85	10	62	70	14	4	10	1.29
60460--60501	19	2.2	20	86	4	59	54	0	0	45	0.99
63163--63362	100	2.0	101	98	1	386	43	16	10	30	1.81
64032--64100	23	3.0	23	84	0	93	27	24	27	20	1.99
64621--64652	13	2.5	13	100	0	64	46	15	6	31	1.71
65814--65882	23	3.0	23	82	0	93	30	26	24	18	1.98
66037--66086	20	2.4	21	80	12	59	36	22	12	30	1.90

Tables:   1

The End!