genome.fa.s9208.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009208.1 Hibiscus syriacus cultivar Beakdansim tig00112795_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140331

Tables:   1   

This is table  1  of  1  ( 107 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9500--9544	19	2.4	19	85	7	56	55	0	2	42	1.12
10044--10091	15	3.2	15	87	0	69	8	64	16	10	1.48
10954--10986	2	16.5	2	100	0	66	48	0	0	51	1.00
13311--13414	33	3.2	33	94	1	174	45	16	7	30	1.75
13409--13450	21	2.0	21	95	0	75	47	7	14	30	1.71
19730--19754	13	1.9	13	100	0	50	48	8	24	20	1.76
20419--20466	22	2.2	21	85	10	62	70	14	4	10	1.29
22298--22340	20	2.2	20	86	0	59	53	0	0	46	1.00
25041--25240	100	2.0	100	100	0	400	43	16	10	31	1.80
25919--25987	23	3.0	23	89	0	102	26	26	27	20	1.99
26524--26555	13	2.5	13	100	0	64	46	15	6	31	1.71
27745--27813	23	3.0	23	82	0	93	30	26	24	18	1.98
33405--33448	2	22.0	2	100	0	88	50	0	0	50	1.00
34096--34148	22	2.5	22	77	17	58	33	16	0	49	1.47
36448--36906	117	3.9	117	88	1	641	21	22	22	33	1.97
36447--36906	237	2.0	234	87	3	674	21	22	22	33	1.97
37162--37212	23	2.2	23	82	6	59	49	0	19	31	1.49
38011--38077	21	3.2	21	79	8	73	28	22	28	20	1.99
38070--38160	42	2.2	41	84	2	110	26	19	29	24	1.98
39899--39954	17	3.4	17	73	14	62	57	0	0	42	0.99
39892--39964	33	2.3	32	86	9	96	61	0	0	38	0.96
41932--41989	22	2.5	22	83	5	62	60	3	3	32	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43014--43116	15	6.5	15	80	15	118	44	0	1	53	1.11
43029--43250	47	4.5	47	77	16	159	37	0	8	53	1.35
43110--43161	22	2.4	22	69	15	54	30	0	11	57	1.34
43166--43890	32	24.7	31	70	20	284	34	0	12	52	1.40
43167--43608	54	8.0	54	71	14	319	34	0	12	52	1.42
43230--43283	14	3.6	14	72	18	54	37	0	5	57	1.22
43373--43413	21	1.9	21	90	5	64	41	0	7	51	1.30
43534--43576	22	2.0	22	95	0	77	37	0	13	48	1.43
43422--43854	54	7.9	54	71	20	258	33	0	12	53	1.40
43650--43713	26	2.5	26	100	0	128	26	0	18	54	1.44
43624--43822	26	7.5	26	70	14	79	34	0	12	53	1.39
43815--43869	14	3.6	14	73	17	56	36	0	5	58	1.21
43592--43858	54	4.9	54	77	12	278	34	0	11	53	1.38
43861--43907	22	2.4	19	86	13	60	29	0	12	57	1.36
43923--43981	31	1.9	31	96	0	109	42	8	6	42	1.61
50575--50629	4	13.8	4	100	0	110	25	0	23	50	1.49
54602--54634	17	2.0	17	88	5	50	36	3	0	60	1.12
58780--58845	22	3.0	22	82	10	91	30	24	19	25	1.98
59081--59156	2	38.0	2	97	0	143	50	1	0	48	1.09
59643--59703	30	2.0	30	96	0	113	31	16	14	37	1.89
62381--62424	22	1.9	24	86	9	65	40	0	0	59	0.98
65878--65921	4	11.0	4	90	0	61	29	2	20	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68191--68265	37	2.0	37	100	0	150	34	8	26	30	1.85
77957--78034	3	26.7	3	79	10	72	60	0	0	39	0.97
77957--78022	21	3.0	21	84	4	87	57	0	0	42	0.98
78321--78884	113	5.0	113	97	0	1042	28	19	16	35	1.93
79668--80261	83	7.2	83	97	0	1107	37	21	14	27	1.92
81367--81424	15	3.9	14	80	17	64	0	13	1	84	0.70
81384--81424	9	4.3	9	88	11	64	0	9	0	90	0.46
81384--81424	20	2.0	20	100	0	82	0	9	0	90	0.46
81368--81427	16	3.9	16	77	16	65	0	13	1	85	0.69
86286--86318	16	2.1	16	100	0	66	6	0	30	63	1.18
92060--92109	18	2.8	18	79	8	59	72	2	0	26	0.96
94227--94291	12	5.1	13	78	17	66	55	0	0	44	0.99
94233--94306	3	25.7	3	76	13	57	59	0	0	40	0.97
94233--94294	21	2.9	21	85	2	79	56	0	0	43	0.99
94626--94694	22	3.1	22	76	12	61	52	2	0	44	1.16
96216--96293	33	2.4	33	100	0	156	43	8	6	41	1.62
101269--101310	18	2.3	18	95	0	75	40	4	16	38	1.70
102187--102240	27	2.0	27	96	0	99	38	0	16	44	1.48
103184--103271	24	3.7	24	72	6	79	20	10	18	51	1.75
103170--103278	48	2.3	48	85	0	137	19	12	17	50	1.78
104811--104850	21	1.9	21	85	10	55	30	20	25	25	1.99
105054--105102	20	2.5	20	93	0	80	34	18	20	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106261--106326	27	2.4	27	76	0	69	37	37	7	16	1.77
106936--106969	17	2.0	17	88	11	52	47	0	0	52	1.00
111577--111639	21	3.1	21	77	9	67	34	4	15	44	1.68
111568--111646	23	3.3	23	68	23	65	35	5	15	44	1.68
111665--111744	42	1.9	42	89	5	126	43	5	5	46	1.47
111794--111871	7	11.3	7	76	2	59	50	32	0	17	1.47
111794--111871	21	3.8	21	77	6	88	50	32	0	17	1.47
111794--111871	41	1.9	41	86	5	113	50	32	0	17	1.47
111986--112012	13	2.1	13	100	0	54	44	0	0	55	0.99
112016--112074	17	3.3	19	83	9	63	47	6	6	38	1.57
112043--112076	9	3.9	9	84	7	52	55	5	0	38	1.24
112036--112074	17	2.2	18	95	4	71	51	5	2	41	1.38
112058--112166	49	2.2	49	86	3	148	51	10	6	32	1.61
112149--112220	21	3.5	22	74	14	55	54	26	1	18	1.52
112567--112632	19	3.4	20	79	6	64	48	7	7	36	1.60
112594--112629	9	3.9	9	85	7	54	55	8	0	36	1.30
112616--112719	48	2.1	49	84	7	131	50	9	6	32	1.61
111889--113399	553	2.8	550	93	2	2523	43	12	8	35	1.73
113114--113164	20	2.4	21	74	9	59	45	5	7	41	1.57
113140--113176	15	2.4	15	90	4	56	54	5	2	37	1.38
113251--113321	14	5.1	14	77	3	63	49	28	0	22	1.50
113486--113532	14	3.7	14	71	26	50	51	4	0	44	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113483--113533	23	2.2	24	96	3	95	49	3	0	47	1.20
113570--113604	11	3.3	11	84	8	54	40	0	0	60	0.97
115725--115766	22	2.0	21	90	4	66	52	14	0	33	1.42
126010--126060	12	4.3	12	76	18	54	33	0	0	66	0.92
126010--126113	24	4.3	23	78	12	86	40	0	0	59	0.97
126039--126109	25	3.1	22	81	16	74	43	0	0	56	0.99
126041--126109	24	2.8	26	84	10	99	44	0	0	55	0.99
126012--126113	18	5.3	18	74	18	57	41	0	0	58	0.98
126049--126119	25	2.9	23	82	14	79	46	1	0	52	1.09
126618--126677	31	1.9	31	86	0	84	43	10	5	41	1.60
128291--128323	17	1.9	17	93	0	57	24	36	18	21	1.95
128300--128413	45	2.5	46	85	4	142	34	21	15	28	1.94
128574--128622	17	2.7	19	87	6	66	22	30	20	26	1.98
128578--128622	19	2.5	17	85	7	54	22	31	20	26	1.98
136896--136935	21	1.9	21	94	0	71	32	30	15	22	1.94
136949--136999	19	2.7	19	91	8	79	23	33	15	27	1.95
136896--137060	64	2.5	65	85	4	217	32	26	15	25	1.96
136896--137105	64	3.2	63	81	7	208	31	25	15	26	1.96
138192--138222	15	2.1	15	100	0	62	45	12	6	35	1.68

Tables:   1

The End!