genome.fa.s9210.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009210.1 Hibiscus syriacus cultivar Beakdansim tig00112797_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136780

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10945--11109	60	2.8	60	79	2	136	30	23	4	41	1.73
10979--11133	60	2.6	60	77	6	170	30	23	4	41	1.74
11261--11316	29	1.9	29	82	7	69	42	3	19	33	1.69
11936--12265	59	5.5	61	70	12	202	32	21	4	40	1.75
12659--12837	60	3.0	60	77	9	157	39	6	21	32	1.79
19671--19733	33	1.9	33	90	0	99	20	22	34	22	1.96
59449--59483	17	1.9	17	88	11	52	17	22	11	48	1.79
62501--62548	25	2.0	25	84	12	64	52	2	0	45	1.12
69334--69373	18	2.4	18	84	12	50	45	7	7	40	1.61
72469--72526	28	2.1	28	84	12	75	44	1	6	46	1.40
72814--72862	3	16.3	3	91	0	80	67	4	0	28	1.09
73985--74093	55	2.0	55	94	1	193	39	9	28	22	1.85
76718--76742	6	4.2	6	100	0	50	36	48	16	0	1.46
76741--76826	35	2.5	34	94	1	145	59	0	0	40	0.97
85184--85208	12	2.1	12	100	0	50	44	0	16	40	1.47
86152--86186	15	2.3	15	95	0	61	17	20	34	28	1.95
86159--86217	18	3.4	18	90	6	88	13	23	37	25	1.92
93416--93465	12	4.2	12	82	2	57	60	4	0	36	1.16
97998--98048	5	10.8	5	87	8	63	21	52	21	3	1.62
98001--98049	14	3.5	13	78	10	53	20	53	22	4	1.63
105107--105149	19	2.3	19	91	0	68	20	30	27	20	1.98
105146--105182	9	4.1	9	86	13	58	21	54	24	0	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105146--105181	5	7.8	5	87	12	51	22	55	22	0	1.44
105146--105182	13	2.7	14	91	8	67	21	54	24	0	1.45
106882--107058	86	2.1	86	86	0	246	22	18	21	37	1.94
110548--110599	23	2.2	24	86	3	70	26	13	11	48	1.77
110803--110882	38	2.1	38	92	0	133	41	12	17	28	1.86
111628--111736	20	5.4	20	88	0	128	37	22	18	21	1.94
111646--111793	60	2.5	60	86	4	192	39	20	18	20	1.92
111641--111793	20	7.7	20	76	8	150	39	20	18	20	1.93
111921--111971	22	2.3	22	89	0	84	23	43	11	21	1.85
112229--112292	20	3.2	20	93	0	110	9	20	17	53	1.71
115916--116055	66	2.2	62	85	7	176	30	1	16	52	1.53
116140--116183	20	2.2	20	91	0	70	36	25	22	15	1.94
116420--116504	39	2.2	39	86	0	116	20	14	18	47	1.83
116500--116575	35	2.2	35	80	4	91	23	13	25	38	1.91
116884--116933	25	2.0	25	96	0	91	44	22	8	26	1.80
117050--117130	20	4.1	20	85	4	110	19	17	22	40	1.91
117055--117132	40	2.0	40	89	5	122	20	17	21	39	1.92
117457--117492	18	2.0	18	94	0	63	19	2	22	55	1.56
120714--120886	20	8.6	20	74	8	127	26	14	24	34	1.94
130381--130406	2	13.0	2	100	0	52	50	0	0	50	1.00
131731--131771	21	2.0	21	90	0	64	46	2	0	51	1.14
132019--132171	27	5.8	25	67	22	73	50	1	1	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132318--132376	14	4.1	14	71	4	55	37	16	5	40	1.71
132881--132965	42	2.0	43	97	2	163	30	10	16	42	1.82

Tables:   1

The End!