genome.fa.s9211.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009211.1 Hibiscus syriacus cultivar Beakdansim tig00112798_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71413

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3291--3329	17	2.3	17	83	12	53	2	38	0	58	1.12
6200--6283	43	2.0	42	90	4	134	30	11	22	34	1.90
12375--12436	31	2.0	32	87	3	90	50	1	0	48	1.10
12411--12459	25	2.0	25	83	0	62	55	4	0	40	1.19
17206--17314	50	2.2	50	80	3	130	44	8	5	42	1.57
18820--18920	51	2.0	51	88	7	152	33	17	17	30	1.94
26094--26159	31	2.1	31	91	0	105	31	3	12	53	1.53
26895--26963	27	2.6	27	79	4	79	42	1	0	56	1.08
35405--35455	20	2.5	20	100	0	102	17	11	37	33	1.86
36458--36508	23	2.2	23	92	0	84	58	15	15	9	1.62
37611--37649	18	2.2	18	86	9	53	43	0	2	53	1.14
41461--41677	116	1.9	117	86	2	312	29	13	3	53	1.57
43612--43660	21	2.3	21	89	0	71	36	26	14	22	1.92
45482--45579	37	2.6	37	81	7	110	37	29	8	24	1.84
45954--46017	31	2.1	31	84	0	83	40	9	3	46	1.52
47072--47135	2	34.5	2	83	14	57	48	1	4	45	1.32
50177--50300	25	5.0	25	96	2	216	28	15	20	36	1.93
50417--50477	3	21.0	3	77	12	65	67	1	3	27	1.16
50574--50598	1	25.0	1	100	0	50	0	0	0	100	0.00
50667--50903	43	5.4	43	71	13	167	24	18	30	27	1.98
50692--50901	89	2.4	91	88	3	302	24	18	29	27	1.98
50781--51027	135	1.9	134	85	8	353	25	19	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65473--65595	25	5.0	25	94	4	207	28	15	20	35	1.93
65471--65595	49	2.6	49	93	5	209	28	15	20	35	1.93
65711--65768	3	20.0	3	76	13	59	65	1	3	29	1.19
65711--65772	11	6.0	11	78	10	60	66	1	3	29	1.17
66732--66835	31	3.4	31	93	2	174	39	23	18	19	1.92
67729--67779	20	2.5	21	84	12	70	19	29	15	35	1.93
68965--69017	28	1.9	27	88	3	79	32	1	16	49	1.57
68964--69028	27	2.3	29	82	10	82	36	1	15	46	1.55
69049--69124	39	2.0	38	85	12	104	39	0	9	51	1.34
69089--69192	29	3.5	28	69	22	77	42	0	7	50	1.31
69138--69195	29	2.0	28	87	9	82	36	0	6	56	1.26
69380--69438	29	2.1	29	83	3	75	18	35	28	16	1.93

Tables:   1

The End!