genome.fa.s9212.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009212.1 Hibiscus syriacus cultivar Beakdansim tig00112799_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55421

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10552--10675	25	5.0	25	96	2	216	28	15	20	36	1.93
10794--10860	3	23.0	3	79	11	77	67	1	2	28	1.14
10794--10862	35	2.0	35	91	5	113	65	2	4	27	1.26
11831--11942	31	3.6	31	96	0	197	39	23	18	18	1.92
12835--12886	20	2.5	21	84	9	70	19	30	15	34	1.93
13751--13786	11	3.2	11	84	7	54	19	22	19	38	1.93
13984--14021	9	4.2	9	83	10	51	31	0	2	65	1.06
14103--14155	28	1.9	27	88	3	79	32	1	16	49	1.57
14102--14166	27	2.3	29	82	10	82	36	1	15	46	1.55
14359--14398	21	1.9	21	100	0	80	27	0	15	57	1.38
14546--14602	29	2.0	29	85	0	78	19	35	29	15	1.93
23050--23110	28	2.2	27	85	5	86	47	16	9	26	1.77
23257--23301	24	2.0	23	86	4	56	35	8	2	53	1.45
25066--25143	27	3.0	24	70	25	68	48	1	1	48	1.17
25586--25624	14	2.8	14	80	0	51	33	17	12	35	1.88
28159--28210	21	2.5	21	81	3	61	38	19	25	17	1.93
28199--28312	20	5.7	20	81	6	104	32	25	17	24	1.97
28196--28312	61	1.9	61	83	0	153	34	24	17	23	1.96
28864--28907	18	2.4	19	84	7	63	50	27	15	6	1.70
28903--29013	19	6.1	19	75	13	99	13	22	18	45	1.85
28903--29013	33	3.1	36	76	12	120	13	22	18	45	1.85
31001--31123	42	2.9	42	78	2	113	22	36	17	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31063--31123	21	3.0	20	71	7	59	22	37	19	19	1.94
32478--32514	14	2.6	14	86	0	56	29	0	21	48	1.50
32693--32843	19	8.7	19	63	21	71	15	21	20	42	1.89
32697--32823	33	3.9	32	86	8	175	14	22	19	42	1.88
32690--32822	66	2.0	66	94	0	230	16	22	19	41	1.90
35115--35139	12	2.1	12	100	0	50	0	28	0	72	0.86
35314--35367	24	2.2	24	90	0	81	38	20	16	24	1.92
36424--36481	20	2.9	20	97	0	107	37	24	22	15	1.93
36500--36567	19	3.8	19	87	12	101	13	22	17	47	1.82
36531--36596	33	2.0	33	81	0	78	15	21	19	43	1.87
36684--36720	14	2.6	14	86	0	56	48	21	0	29	1.50
38586--38671	19	4.5	19	85	4	111	39	23	23	13	1.90
38587--38660	39	1.9	38	88	2	112	37	22	24	14	1.92
38697--38792	19	5.7	18	72	21	91	12	20	21	44	1.85
38719--38776	14	3.9	14	79	16	71	10	17	24	48	1.78
38702--38792	32	2.8	32	94	3	155	12	19	21	46	1.83
38777--38831	20	2.8	19	83	8	65	16	23	23	36	1.94
39310--39357	18	2.7	18	86	0	78	18	12	41	27	1.86
40675--40717	20	2.2	20	91	0	68	53	16	18	11	1.72
41226--41339	20	5.7	20	82	2	120	24	18	25	31	1.97
41206--41341	41	3.3	41	78	2	148	24	17	24	33	1.96
41206--41361	41	3.8	41	76	3	109	23	19	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46287--46326	18	2.2	18	90	0	62	17	45	22	15	1.85
47231--47524	117	2.5	117	94	0	516	18	15	32	32	1.93
53629--53657	12	2.3	13	94	5	51	17	44	24	13	1.85
54554--54849	117	2.5	117	92	0	493	18	15	33	32	1.93

Tables:   1

The End!