Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009214.1 Hibiscus syriacus cultivar Beakdansim tig00112801_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 549473
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 3 of 3
Found at i:413473 original size:183 final size:183
Alignment explanation
Indices: 413165--413737 Score: 1083
Period size: 183 Copynumber: 3.1 Consensus size: 183
413155 CAAAGTTTTC
* *
413165 ACACTTTTTAATATTTTGTCTGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
*
413230 CAAAAAGTGTCGACATTTATACATCGAAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
413295 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
* *
413348 ACACTTTTTAATATTGTGTCGGTACTTTATATCTAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
413413 CAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
413478 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
413531 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
*
413596 CAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTATAATAT
66 CAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
413661 AACCTGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
413714 ACACTTTTTAATATTGTGTCGGTA
1 ACACTTTTTAATATTGTGTCGGTA
413738 ATTTTAAGTA
Statistics
Matches: 381, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 381 1.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (183 bp):
ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
CAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
Found at i:416613 original size:23 final size:23
Alignment explanation
Indices: 416578--416650 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
416568 ATAGGTAAAA
* *
416578 ATATGATGGAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
416601 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
416624 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
416647 ATAT
1 ATAT
416651 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:417099 original size:23 final size:23
Alignment explanation
Indices: 417068--417140 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
417058 ATAGGTAAAA
*
417068 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
417091 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
**
417114 ATATAATGTAATAGGTAATGCTT
1 ATATAATGTAATAGGTAGCGCTT
417137 ATAT
1 ATAT
417141 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:417454 original size:489 final size:490
Alignment explanation
Indices: 416232--418032 Score: 3279
Period size: 490 Copynumber: 3.7 Consensus size: 490
416222 AGGTATGTAC
416232 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
416297 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
416362 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
* *
416427 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTACAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
416492 AAAATTGAAACATAAATTACATAACTTT-AAAAAAGTATCGATCATTTTTATAAAAAGTATGGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAATATCGATCATTTTTATAAAAAGTATGGAC
*
416556 ACTTTCAATATAATAGGTAAAAATATGATGGAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
416621 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
416686 ACTTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 AC-TTTTTTCACTGTGGAAAACATTAATTTAAGGTT
416722 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
416787 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
416852 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
* * *
416917 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATAAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
416982 AAAATTGAAACATAAATTACATAACTTT-AAAAAAATATCGATCATTTTTATAAAAAGTATGTAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAATATCGATCATTTTTATAAAAAGTATGGAC
417046 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
*
417111 TTTATATAATGTAATAGGTAATGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
417176 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
417211 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
417276 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
417341 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
* *
417406 ATTTTTTGTACAAATGAAATTATTAAATTAATATTGTAGGTAGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
417471 AAAATTGAAACATAAATTACATAACTTTAAAAAAAATATCGATCCTTTTTATAAAACGTATGGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAATATCGATCATTTTTATAAAAAGTATGGAC
417536 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
* *
417601 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAATATCTATCATTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
*
417666 ACTTATTTCACTGTGGAAAACATTAATTTAAGGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
* * * ** *
417701 ATATTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATCTAATGATTTATTTTTTAT
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
417766 GTTACGGTATATATTATTATTAAATTAAAAACACTAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
417831 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
417896 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT--AA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
417959 AAAATTGAAACATAAATTACATAACTTTAAAAAAAAGTATCGAT-TTTTTTATAAAAAAGTATAG
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAA-TATCGATCATTTTTAT-AAAAAGTATGG
418023 ACACTTTCAA
324 ACACTTTCAA
418033 CATATTATAA
Statistics
Matches: 1275, Mismatches: 33, Indels: 7
0.97 0.03 0.01
Matches are distributed among these distances:
488 45 0.04
489 340 0.27
490 890 0.70
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.40
Consensus pattern (490 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAAATTGAAACATAAATTACATAACTTTAAAAAAAATATCGATCATTTTTATAAAAAGTATGGAC
ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
Found at i:417589 original size:23 final size:23
Alignment explanation
Indices: 417558--417630 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
417548 ATAGGTAAAA
*
417558 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
417581 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
417604 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
417627 ATAT
1 ATAT
417631 TGTAAAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:443213 original size:23 final size:23
Alignment explanation
Indices: 443183--443230 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
443173 AGGAGAACAT
* *
443183 ATATAATTGATTAAATTATATAA
1 ATATAATTGATTAAAGTATAGAA
443206 ATATAATTGATTAAAGTATAGAA
1 ATATAATTGATTAAAGTATAGAA
443229 AT
1 AT
443231 TATTGTCGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (23 bp):
ATATAATTGATTAAAGTATAGAA
Found at i:443792 original size:25 final size:23
Alignment explanation
Indices: 443748--443794 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
443738 GGTACAATCC
*
443748 TACTACGACACTTTCGAGTGCAA
1 TACTACGACACTTTCAAGTGCAA
*
443771 TACTACGAGGCACTTTTAAGTGCA
1 TACTACGA--CACTTTCAAGTGCA
443795 TATAGTGTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
25 12 0.60
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (23 bp):
TACTACGACACTTTCAAGTGCAA
Found at i:444486 original size:23 final size:23
Alignment explanation
Indices: 444460--444505 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
444450 GGTTCTACGC
444460 GGTCCTTCAGGACAATTCTATGT
1 GGTCCTTCAGGACAATTCTATGT
*
444483 GGTCCTTCGGGACAATTCTATGT
1 GGTCCTTCAGGACAATTCTATGT
444506 AGTTTTTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.35
Consensus pattern (23 bp):
GGTCCTTCAGGACAATTCTATGT
Found at i:444557 original size:24 final size:24
Alignment explanation
Indices: 444530--444578 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
444520 AATCTATGTT
*
444530 GCACTTCGGTGCATATTCTACGTG
1 GCACTTCGGTGCAAATTCTACGTG
*
444554 GCACTTTGGTGCAAATTCTACGTG
1 GCACTTCGGTGCAAATTCTACGTG
444578 G
1 G
444579 TAGTTTCGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.18, C:0.22, G:0.27, T:0.33
Consensus pattern (24 bp):
GCACTTCGGTGCAAATTCTACGTG
Found at i:448088 original size:20 final size:20
Alignment explanation
Indices: 448044--448196 Score: 137
Period size: 20 Copynumber: 7.5 Consensus size: 20
448034 AGTTCTGACT
*
448044 ATCGCAACGAGTATCCGTAAA
1 ATCGCAACGCGTATCCGT-AA
448065 ATCGCAACGCGTATCCGTAA
1 ATCGCAACGCGTATCCGTAA
* * *
448085 ATCGCAACGAGAATACGTAA
1 ATCGCAACGCGTATCCGTAA
* *
448105 ATCGCAACGCATATCTGTAA
1 ATCGCAACGCGTATCCGTAA
* * *
448125 ATCGCAACGAGAATACGTAA
1 ATCGCAACGCGTATCCGTAA
* * * *
448145 ATCGTAATGCATATCTGTAA
1 ATCGCAACGCGTATCCGTAA
* *
448165 ATCGCAACG-ATAATACGTAAA
1 ATCGCAACGCGT-ATCCGT-AA
448186 ATCGCAACGCG
1 ATCGCAACGCG
448197 ATTTTTAAAG
Statistics
Matches: 103, Mismatches: 26, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
19 2 0.02
20 73 0.71
21 28 0.27
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGTATCCGTAA
Found at i:448108 original size:81 final size:80
Alignment explanation
Indices: 448021--448195 Score: 228
Period size: 81 Copynumber: 2.2 Consensus size: 80
448011 CGCGAACATA
* * * *
448021 TAAATCGCAACGCAGT-TCTG-ACTATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTA
1 TAAATCGCAACGCA-TATCTGTA-AATCGCAACGAGAATACGT-AAATCGCAACGCATATCCGTA
448084 AATCGCAACGAGAATACG
63 AATCGCAACGAGAATACG
* * *
448102 TAAATCGCAACGCATATCTGTAAATCGCAACGAGAATACGTAAATCGTAATGCATATCTGTAAAT
1 TAAATCGCAACGCATATCTGTAAATCGCAACGAGAATACGTAAATCGCAACGCATATCCGTAAAT
*
448167 CGCAACGATAATACG
66 CGCAACGAGAATACG
448182 TAAAATCGCAACGC
1 T-AAATCGCAACGC
448196 GATTTTTAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
80 36 0.43
81 46 0.55
82 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (80 bp):
TAAATCGCAACGCATATCTGTAAATCGCAACGAGAATACGTAAATCGCAACGCATATCCGTAAAT
CGCAACGAGAATACG
Found at i:448125 original size:40 final size:40
Alignment explanation
Indices: 448021--448195 Score: 228
Period size: 40 Copynumber: 4.3 Consensus size: 40
448011 CGCGAACATA
* * *
448021 TAAATCGCAACGCAGT-TCTG-ACTATCGCAACGAGTATCCG
1 TAAATCGCAACGCA-TATCTGTA-AATCGCAACGAGAATACG
* *
448061 TAAAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACG
1 T-AAATCGCAACGCATATCTGTAAATCGCAACGAGAATACG
448102 TAAATCGCAACGCATATCTGTAAATCGCAACGAGAATACG
1 TAAATCGCAACGCATATCTGTAAATCGCAACGAGAATACG
* * *
448142 TAAATCGTAATGCATATCTGTAAATCGCAACGATAATACG
1 TAAATCGCAACGCATATCTGTAAATCGCAACGAGAATACG
448182 TAAAATCGCAACGC
1 T-AAATCGCAACGC
448196 GATTTTTAAA
Statistics
Matches: 119, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
40 77 0.65
41 41 0.34
42 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (40 bp):
TAAATCGCAACGCATATCTGTAAATCGCAACGAGAATACG
Found at i:448785 original size:20 final size:20
Alignment explanation
Indices: 448760--448850 Score: 105
Period size: 20 Copynumber: 4.5 Consensus size: 20
448750 TTCTAAACTT
448760 AAAATCGCAACATGAAAATG
1 AAAATCGCAACATGAAAATG
448780 AAAATCGCAACATGAAAATG
1 AAAATCGCAACATGAAAATG
** *
448800 ACTATCACAACGA-GAGAAATG
1 AAAATCGCAAC-ATGA-AAATG
**
448821 AAAATCGCAACGCG-AAATG
1 AAAATCGCAACATGAAAATG
448840 AAAATCGCAAC
1 AAAATCGCAAC
448851 GAGATAATCG
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
19 16 0.26
20 30 0.49
21 15 0.25
ACGTcount: A:0.52, C:0.19, G:0.16, T:0.13
Consensus pattern (20 bp):
AAAATCGCAACATGAAAATG
Found at i:448839 original size:19 final size:19
Alignment explanation
Indices: 448760--448887 Score: 77
Period size: 19 Copynumber: 6.8 Consensus size: 19
448750 TTCTAAACTT
**
448760 AAAATCGCAACATGAAAATG
1 AAAATCGCAACGCG-AAATG
**
448780 AAAATCGCAACATGAAAATG
1 AAAATCGCAACGCG-AAATG
** * *
448800 ACTATCACAACGAGAGAAATG
1 AAAATCGCAAC--GCGAAATG
448821 AAAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
448840 AAAATCGCAA--CG--A-G
1 AAAATCGCAACGCGAAATG
* **
448854 ATAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATG
*
448873 AAAATCACAACGCGA
1 AAAATCGCAACGCGA
448888 TTTTAATTTC
Statistics
Matches: 88, Mismatches: 13, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
14 10 0.11
15 1 0.01
16 2 0.02
17 2 0.02
18 1 0.01
19 30 0.34
20 28 0.32
21 13 0.15
22 1 0.01
ACGTcount: A:0.50, C:0.21, G:0.17, T:0.12
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:448906 original size:19 final size:19
Alignment explanation
Indices: 448884--448929 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
448874 AAATCACAAC
* *
448884 GCGATTTTAATTTCTCGTT
1 GCGATTCTAATTTCGCGTT
*
448903 GCGATTCTCATTTCGCGTT
1 GCGATTCTAATTTCGCGTT
*
448922 ACGATTCT
1 GCGATTCT
448930 CTCGTCGCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
GCGATTCTAATTTCGCGTT
Found at i:448930 original size:19 final size:19
Alignment explanation
Indices: 448893--448930 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
448883 CGCGATTTTA
* *
448893 ATTTCTCGTTGCGATTCTC
1 ATTTCGCGTTACGATTCTC
448912 ATTTCGCGTTACGATTCTC
1 ATTTCGCGTTACGATTCTC
448931 TCGTCGCGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.13, C:0.26, G:0.16, T:0.45
Consensus pattern (19 bp):
ATTTCGCGTTACGATTCTC
Found at i:448940 original size:33 final size:34
Alignment explanation
Indices: 448896--448960 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
448886 GATTTTAATT
* *
448896 TCTCGTTGCGATTCTCATTTC-GCGTTACGATTC
1 TCTCGTCGCGATACTCATTTCTGCGTTACGATTC
* *
448929 TCTCGTCGCGATAGTCATTTCTGCGTTGCGAT
1 TCTCGTCGCGATACTCATTTCTGCGTTACGAT
448961 AGTCATTCTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 18 0.67
34 9 0.33
ACGTcount: A:0.12, C:0.26, G:0.22, T:0.40
Consensus pattern (34 bp):
TCTCGTCGCGATACTCATTTCTGCGTTACGATTC
Found at i:448987 original size:20 final size:20
Alignment explanation
Indices: 448925--448980 Score: 87
Period size: 20 Copynumber: 2.8 Consensus size: 20
448915 TCGCGTTACG
*
448925 ATTCTCTCGTCGCGATAGTC
1 ATTCTCTCGTTGCGATAGTC
448945 ATT-TCTGCGTTGCGATAGTC
1 ATTCTCT-CGTTGCGATAGTC
448965 ATTCTCTCGTTGCGAT
1 ATTCTCTCGTTGCGAT
448981 TTTCATTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 3 0.09
20 27 0.82
21 3 0.09
ACGTcount: A:0.14, C:0.25, G:0.21, T:0.39
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATAGTC
Found at i:452451 original size:14 final size:14
Alignment explanation
Indices: 452432--452465 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
452422 TGTTTAATTA
452432 ATTTGTAAAAGATG
1 ATTTGTAAAAGATG
*
452446 ATTTGTAAAAGTTG
1 ATTTGTAAAAGATG
452460 ATTTGT
1 ATTTGT
452466 TTAATTGATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (14 bp):
ATTTGTAAAAGATG
Found at i:452594 original size:19 final size:18
Alignment explanation
Indices: 452572--452670 Score: 54
Period size: 19 Copynumber: 5.7 Consensus size: 18
452562 AAAAATGACT
452572 ATCGCAATGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
*
452591 ATCGCAA-CG--A-GAGA
1 ATCGCAAGCGAAATGAAA
* *
452605 ATCGCTATGCGAAATTAAA
1 ATCGC-AAGCGAAATGAAA
*
452624 ATCGCAA-CG--A-CAAA
1 ATCGCAAGCGAAATGAAA
452638 ATCGCAACGCGAAACT-AAA
1 ATCGCAA-GCGAAA-TGAAA
452657 ATCGCAACGCGAAA
1 ATCGCAA-GCGAAA
452671 CTAAATTCGC
Statistics
Matches: 63, Mismatches: 6, Indels: 22
0.69 0.07 0.24
Matches are distributed among these distances:
14 18 0.29
15 3 0.05
16 4 0.06
17 4 0.06
18 3 0.05
19 31 0.49
ACGTcount: A:0.45, C:0.22, G:0.19, T:0.13
Consensus pattern (18 bp):
ATCGCAAGCGAAATGAAA
Found at i:452615 original size:33 final size:32
Alignment explanation
Indices: 452572--452665 Score: 125
Period size: 33 Copynumber: 2.8 Consensus size: 32
452562 AAAAATGACT
* *
452572 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAAT-AAAATCGCAACGACAAA
*
452605 ATCGCTATGCGAAATTAAAATCGCAACGACAAA
1 ATCGCAATGCGAAA-TAAAATCGCAACGACAAA
*
452638 ATCGCAACGCGAAACTAAAATCGCAACG
1 ATCGCAATGCGAAA-TAAAATCGCAACG
452666 CGAAACTAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
33 53 0.98
34 1 0.02
ACGTcount: A:0.45, C:0.22, G:0.19, T:0.14
Consensus pattern (32 bp):
ATCGCAATGCGAAATAAAATCGCAACGACAAA
Found at i:452687 original size:19 final size:19
Alignment explanation
Indices: 452635--452680 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
452625 TCGCAACGAC
452635 AAAATCGCAACGCGAAACT
1 AAAATCGCAACGCGAAACT
452654 AAAATCGCAACGCGAAACT
1 AAAATCGCAACGCGAAACT
*
452673 AAATTCGC
1 AAAATCGC
452681 GTTGCGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.46, C:0.26, G:0.15, T:0.13
Consensus pattern (19 bp):
AAAATCGCAACGCGAAACT
Found at i:452723 original size:33 final size:33
Alignment explanation
Indices: 452680--452773 Score: 161
Period size: 33 Copynumber: 2.8 Consensus size: 33
452670 ACTAAATTCG
452680 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
* *
452713 TGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
452746 CGTTGCAATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
452774 AGTCATTTTC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.45
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:452797 original size:14 final size:14
Alignment explanation
Indices: 452778--452812 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
452768 TGCGATAGTC
*
452778 ATTTTCGCGTTGCG
1 ATTTTCACGTTGCG
452792 ATTTTCACGTTGCG
1 ATTTTCACGTTGCG
452806 ATTTTCA
1 ATTTTCA
452813 TTTCGCATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.46
Consensus pattern (14 bp):
ATTTTCACGTTGCG
Found at i:452849 original size:33 final size:33
Alignment explanation
Indices: 452767--452860 Score: 107
Period size: 33 Copynumber: 2.8 Consensus size: 33
452757 TCATTTCGCA
* *
452767 TTGCGATAGTCATTTTCGCGTTGCGATTTTCACG
1 TTGCGATAGT-AATTTCGCGTTGCGATTCTCACG
** * * *
452801 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATAGTAATTTCGCGTTGCGATTCTCACG
452834 TTGCGATAGTAATTTCCGCGTTGCGAT
1 TTGCGATAGTAATTT-CGCGTTGCGAT
452861 AGACATTAAG
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
33 30 0.62
34 18 0.38
ACGTcount: A:0.15, C:0.21, G:0.22, T:0.41
Consensus pattern (33 bp):
TTGCGATAGTAATTTCGCGTTGCGATTCTCACG
Found at i:455188 original size:3 final size:3
Alignment explanation
Indices: 455180--455206 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
455170 CTTTGGGGAT
455180 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
455207 AGTGTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:455415 original size:24 final size:24
Alignment explanation
Indices: 455381--455434 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
455371 CTGAAAAATC
455381 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
455405 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
455429 ATCAAA
1 ATCAAA
455435 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:455448 original size:24 final size:24
Alignment explanation
Indices: 455381--455448 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
455371 CTGAAAAATC
* * *
455381 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
455405 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
455429 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
455449 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:456304 original size:20 final size:19
Alignment explanation
Indices: 456283--456542 Score: 164
Period size: 20 Copynumber: 12.9 Consensus size: 19
456273 GCGATAGTCA
*
456283 GAATCTCGTTGCGATTTAC
1 GAATCGCGTTGCGATTTAC
* *
456302 AGATTCGCATTGCGATTTAC
1 -GAATCGCGTTGCGATTTAC
**
456322 GTGTTCGCGTTGCGATTTAC
1 G-AATCGCGTTGCGATTTAC
* * *
456342 GTATTCGCATTGCGATTTAT
1 G-AATCGCGTTGCGATTTAC
* *
456362 GGATACGCATTGCGATTTAC
1 GAAT-CGCGTTGCGATTTAC
* *
456382 GTATTCTCGTTGCGATTTAC
1 G-AATCGCGTTGCGATTTAC
456402 -AGATACGCGTTGCGATTTAC
1 GA-AT-CGCGTTGCGATTTAC
* *
456422 GTATTCTCGTTGCGATTTAC
1 G-AATCGCGTTGCGATTTAC
*
456442 GGATACGCGTTGCGATTTTAC
1 GAAT-CGCGTTGCGA-TTTAC
* *
456463 GTATTGTCGTTGCGATTTAC
1 GAATCG-CGTTGCGATTTAC
*
456483 GGATACGCGTTGCGATTTTAC
1 GAAT-CGCGTTGCGA-TTTAC
* * * *
456504 GGATACTCATTGCGATAGT-C
1 GAAT-CGCGTTGCGAT-TTAC
456524 AGAATCGCGTTGCGATTTA
1 -GAATCGCGTTGCGATTTA
456543 TATGTTCGCG
Statistics
Matches: 192, Mismatches: 33, Indels: 30
0.75 0.13 0.12
Matches are distributed among these distances:
18 1 0.01
19 5 0.03
20 144 0.75
21 41 0.21
22 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (19 bp):
GAATCGCGTTGCGATTTAC
Found at i:456333 original size:40 final size:40
Alignment explanation
Indices: 456289--456519 Score: 288
Period size: 40 Copynumber: 5.7 Consensus size: 40
456279 GTCAGAATCT
*
456289 CGTTGCGATTTACAG-ATTCGCATTGCGATTTACGTG-TTCG
1 CGTTGCGATTTAC-GTATTCGCATTGCGATTTACG-GATACG
*
456329 CGTTGCGATTTACGTATTCGCATTGCGATTTATGGATACG
1 CGTTGCGATTTACGTATTCGCATTGCGATTTACGGATACG
* * * *
456369 CATTGCGATTTACGTATTCTCGTTGCGATTTACAGATACG
1 CGTTGCGATTTACGTATTCGCATTGCGATTTACGGATACG
* *
456409 CGTTGCGATTTACGTATTCTCGTTGCGATTTACGGATACG
1 CGTTGCGATTTACGTATTCGCATTGCGATTTACGGATACG
*
456449 CGTTGCGATTTTACGTATT-GTCGTTGCGATTTACGGATACG
1 CGTTGCGA-TTTACGTATTCG-CATTGCGATTTACGGATACG
* * *
456490 CGTTGCGATTTTACGGATACTCATTGCGAT
1 CGTTGCGA-TTTACGTATTCGCATTGCGAT
456520 AGTCAGAATC
Statistics
Matches: 172, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 2 0.01
40 115 0.67
41 55 0.32
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (40 bp):
CGTTGCGATTTACGTATTCGCATTGCGATTTACGGATACG
Found at i:456355 original size:60 final size:60
Alignment explanation
Indices: 456289--456500 Score: 250
Period size: 60 Copynumber: 3.5 Consensus size: 60
456279 GTCAGAATCT
* *
456289 CGTTGCGATTTACAGATTCGCATTGCGATTTACGTGTTCGCGTTGCGATTTACGTATTCG
1 CGTTGCGATTTACGGATACGCATTGCGATTTACGTGTTCGCGTTGCGATTTACGTATTCG
* * * * *
456349 CATTGCGATTTATGGATACGCATTGCGATTTACGTATTCTCGTTGCGATTTACAG-ATACG
1 CGTTGCGATTTACGGATACGCATTGCGATTTACGTGTTCGCGTTGCGATTTAC-GTATTCG
* * * * *
456409 CGTTGCGATTTACGTATTCTCGTTGCGATTTACG-GATACGCGTTGCGATTTTACGTATT-G
1 CGTTGCGATTTACGGATACGCATTGCGATTTACGTG-TTCGCGTTGCGA-TTTACGTATTCG
*
456469 TCGTTGCGATTTACGGATACGCGTTGCGATTT
1 -CGTTGCGATTTACGGATACGCATTGCGATTT
456501 TACGGATACT
Statistics
Matches: 127, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
60 91 0.72
61 36 0.28
ACGTcount: A:0.18, C:0.19, G:0.25, T:0.38
Consensus pattern (60 bp):
CGTTGCGATTTACGGATACGCATTGCGATTTACGTGTTCGCGTTGCGATTTACGTATTCG
Found at i:457993 original size:7 final size:6
Alignment explanation
Indices: 457987--458039 Score: 54
Period size: 7 Copynumber: 8.2 Consensus size: 6
457977 GAAAAAAATG
457987 AATAAT GAATAAT AAATAAT AATAAT AA-AAT AAATAAAT AATAAT AAATAAT
1 AATAAT -AATAAT -AATAAT AATAAT AATAAT -AAT-AAT AATAAT -AATAAT
458039 A
1 A
458040 TATTATCATT
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
5 3 0.07
6 14 0.34
7 21 0.51
8 3 0.07
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (6 bp):
AATAAT
Found at i:458000 original size:3 final size:3
Alignment explanation
Indices: 457987--458039 Score: 54
Period size: 3 Copynumber: 16.3 Consensus size: 3
457977 GAAAAAAATG
457987 AAT AAT GAAT AAT AAAT AAT AAT AAT AA- AAT AAAT AAAT AAT AAT AAAT
1 AAT AAT -AAT AAT -AAT AAT AAT AAT AAT AAT -AAT -AAT AAT AAT -AAT
458036 AAT A
1 AAT A
458040 TATTATCATT
Statistics
Matches: 45, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
2 2 0.04
3 27 0.60
4 16 0.36
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:458007 original size:10 final size:10
Alignment explanation
Indices: 457994--458039 Score: 65
Period size: 10 Copynumber: 4.4 Consensus size: 10
457984 ATGAATAATG
457994 AATAATAAAT
1 AATAATAAAT
*
458004 AATAATAATAA
1 AATAATAA-AT
458015 AATAAATAAAT
1 AAT-AATAAAT
458026 AATAATAAAT
1 AATAATAAAT
458036 AATA
1 AATA
458040 TATTATCATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
10 19 0.59
11 8 0.25
12 5 0.16
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AATAATAAAT
Found at i:458549 original size:37 final size:37
Alignment explanation
Indices: 458499--458606 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
458489 TTGTGGATCT
* *
458499 TATTTTTAGGAGTTTGAATCATAGTAGAACTCTATCA
1 TATTTTTAGGAGTTTGAATCATAATAAAACTCTATCA
* *
458536 TATTTTTAGGAGTTTGAATCCTAATAAAACTCTATCC
1 TATTTTTAGGAGTTTGAATCATAATAAAACTCTATCA
458573 TATTTTTAGGAGTTTGAATCATAATAAAACTCTA
1 TATTTTTAGGAGTTTGAATCATAATAAAACTCTA
458607 ACGTTATGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (37 bp):
TATTTTTAGGAGTTTGAATCATAATAAAACTCTATCA
Found at i:459324 original size:34 final size:34
Alignment explanation
Indices: 459286--459398 Score: 153
Period size: 34 Copynumber: 3.4 Consensus size: 34
459276 AAGGTCTTGG
*
459286 GTTTCAAGAAAAACAATTTCAAAGGTTTTTTTGT
1 GTTTCAAGAGAAACAATTTCAAAGGTTTTTTTGT
* *
459320 GTTTCAAGAGAAACAATTCCAATGG---TTTT-T
1 GTTTCAAGAGAAACAATTTCAAAGGTTTTTTTGT
459350 GTTTCAAGAGAAACAATTTCAAAGGTTTTTTTTGT
1 GTTTCAAGAGAAACAATTTCAAAGG-TTTTTTTGT
*
459385 ATTTCAAGAGAAAC
1 GTTTCAAGAGAAAC
459399 TGTCTCAAGG
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
30 24 0.35
31 4 0.06
34 26 0.38
35 14 0.21
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (34 bp):
GTTTCAAGAGAAACAATTTCAAAGGTTTTTTTGT
Found at i:459355 original size:30 final size:30
Alignment explanation
Indices: 459286--459379 Score: 125
Period size: 30 Copynumber: 3.0 Consensus size: 30
459276 AAGGTCTTGG
*
459286 GTTTCAAGAAAAACAATTTCAAAGGTTTTTTTGT
1 GTTTCAAGAGAAACAATTTCAAAGG---TTTT-T
* *
459320 GTTTCAAGAGAAACAATTCCAATGGTTTTT
1 GTTTCAAGAGAAACAATTTCAAAGGTTTTT
459350 GTTTCAAGAGAAACAATTTCAAAGGTTTTT
1 GTTTCAAGAGAAACAATTTCAAAGGTTTTT
459380 TTTGTATTTC
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
30 29 0.53
31 4 0.07
34 22 0.40
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (30 bp):
GTTTCAAGAGAAACAATTTCAAAGGTTTTT
Found at i:459433 original size:37 final size:37
Alignment explanation
Indices: 459386--459951 Score: 511
Period size: 37 Copynumber: 16.1 Consensus size: 37
459376 TTTTTTTGTA
* *
459386 TTTCAAGAGAAACTGTCTCAAGGGAGGCAAAATTTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
* *
459423 TTTCAAGAGAAACATAT-TC-A-A-AG-----ATTGGTG
1 TTTCAAGAGAAAC-TGTCTCAAGAGAGACAAAATT-TTG
*
459453 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTA
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
* *
459490 TTTCAAGGGAAACTGTCTCAATAGAGACAAAA-TTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
* *
459526 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
* * * * *
459563 TTCCAAAAGAAACTTTCTCAAGGGAGACGAAA-TTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
*
459599 TTTCAAG-GAAAACATAT-TC-A-A-AG-----ATTTTG
1 TTTCAAGAG-AAAC-TGTCTCAAGAGAGACAAAATTTTG
* *
459628 TTTCAA-AGGAAACTGTCTCAAGAGACACAAAACTTTG
1 TTTCAAGA-GAAACTGTCTCAAGAGAGACAAAATTTTG
*
459665 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
* *
459702 TTTCAAGGGAAATTGTCTCAAGAGAGACAAAA-TTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
* * *
459738 TTTCAAGAGAAACTGCCTCAAGAGAGACAAAACTTAG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
* * * *
459775 TTCCAAAAGAAACTGTCTCAAGGGAGAC-AAATTTTT
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
*
459811 TTTCAAG-GAAAACAGAT-TC-A-A-AG-----ATTTTG
1 TTTCAAGAG-AAACTG-TCTCAAGAGAGACAAAATTTTG
*
459840 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
* *
459876 TTTCAAGGGAAATTGTCTCAAGAGAGACAAAA-TTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
* * *
459912 TTTTAAGAAAAACTGTCTCAAGAGAGACAAAACTTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
459949 TTT
1 TTT
459952 TGAGTAAATT
Statistics
Matches: 438, Mismatches: 50, Indels: 82
0.77 0.09 0.14
Matches are distributed among these distances:
28 4 0.01
29 40 0.09
30 21 0.05
31 3 0.01
32 4 0.01
33 6 0.01
34 2 0.00
35 4 0.01
36 165 0.38
37 183 0.42
38 6 0.01
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (37 bp):
TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTG
Found at i:459538 original size:36 final size:36
Alignment explanation
Indices: 459451--459951 Score: 518
Period size: 37 Copynumber: 14.1 Consensus size: 36
459441 CAAAGATTGG
459451 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
* * *
459488 TATTTCAAGGGAAACTGTCTCAATAGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
459524 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
* * * * * *
459561 AGTTCCAAAAGAAACTTTCTCAAGGGAGACGAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* *
459597 TGTTTCAAG-GAAAACATAT-TC-A-A-AG----ATTT
1 TGTTTCAAGAG-AAAC-TGTCTCAAGAGAGACAAAATT
*
459626 TGTTTCAA-AGGAAACTGTCTCAAGAGACACAAAACTT
1 TGTTTCAAGA-GAAACTGTCTCAAGAGAGACAAAA-TT
459663 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
* *
459700 TGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
*
459736 TGTTTCAAGAGAAACTGCCTCAAGAGAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
* * * * *
459773 AGTTCCAAAAGAAACTGTCTCAAGGGAGACAAATTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* * *
459809 TTTTTCAAG-GAAAACAGAT-TC-A-A-AG----ATTT
1 TGTTTCAAGAG-AAACTG-TCTCAAGAGAGACAAAATT
*
459838 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* *
459874 TGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* *
459910 TGTTTTAAGAAAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
459947 TGTTT
1 TGTTT
459952 TGAGTAAATT
Statistics
Matches: 389, Mismatches: 47, Indels: 56
0.79 0.10 0.11
Matches are distributed among these distances:
28 3 0.01
29 36 0.09
30 4 0.01
31 2 0.01
32 3 0.01
33 4 0.01
35 4 0.01
36 163 0.42
37 169 0.43
38 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (36 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
Found at i:459671 original size:22 final size:21
Alignment explanation
Indices: 459645--459748 Score: 63
Period size: 15 Copynumber: 5.4 Consensus size: 21
459635 GGAAACTGTC
459645 TCAAGAGACACAAAACTTTGTT
1 TCAAGAGA-ACAAAACTTTGTT
*
459667 TCAAGAG----AAAC--TGTC
1 TCAAGAGAACAAAACTTTGTT
459682 TCAAGAGAGACAAAACTTTGTT
1 TCAAGAGA-ACAAAACTTTGTT
* *
459704 TCAAG-G---GAAA--TTGTC
1 TCAAGAGAACAAAACTTTGTT
459719 TCAAGAGAGACAAAA-TTTGTT
1 TCAAGAGA-ACAAAACTTTGTT
459740 TCAAGAGAA
1 TCAAGAGAA
459749 ACTGCCTCAA
Statistics
Matches: 63, Mismatches: 6, Indels: 28
0.65 0.06 0.29
Matches are distributed among these distances:
15 19 0.30
16 1 0.02
17 7 0.11
20 8 0.13
21 13 0.21
22 15 0.24
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.25
Consensus pattern (21 bp):
TCAAGAGAACAAAACTTTGTT
Found at i:459689 original size:212 final size:210
Alignment explanation
Indices: 459451--459951 Score: 817
Period size: 212 Copynumber: 2.4 Consensus size: 210
459441 CAAAGATTGG
*
459451 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTATTTCAAGGGAAACTGTCTCAATAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTT-TTTCAAGGGAAACTGTCTCAAGAGAG
* *
459516 ACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTTTCT
65 ACAAAATTTGTTTCAAGAGAAACTGCCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCT
*
459581 CAAGGGAGACGAAA-TTTGTTTCAAGGAAAACATATTCAAAGATTTTGTTTCAAAGGAAACTGTC
130 CAAGGGAGAC-AAATTTTGTTTCAAGGAAAACAGATTCAAAGATTTTGTTTCAAAGGAAACTGTC
459645 TCAAGAGACACAAAACTT
194 TCAAGAGACACAAAA-TT
* *
459663 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAATTGTCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTTTTTTCAAGGGAAACTGTCTCAAGAGAG
459728 ACAAAATTTGTTTCAAGAGAAACTGCCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCT
65 ACAAAATTTGTTTCAAGAGAAACTGCCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCT
* *
459793 CAAGGGAGACAAATTTTTTTTCAAGGAAAACAGATTCAAAGATTTTGTTTCAAGGGAAACTGTCT
130 CAAGGGAGACAAATTTTGTTTCAAGGAAAACAGATTCAAAGATTTTGTTTCAAAGGAAACTGTCT
*
459858 CAAGAGAGACAAAATT
195 CAAGAGACACAAAATT
* * **
459874 TGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTGTTTT-AAGAAAAACTGTCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTT-TTTTCAAGGGAAACTGTCTCAAGAGAG
459938 ACAAAACTTTGTTT
65 ACAAAA-TTTGTTT
459952 TGAGTAAATT
Statistics
Matches: 270, Mismatches: 15, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
210 28 0.10
211 47 0.17
212 192 0.71
213 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (210 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTTTTCAAGGGAAACTGTCTCAAGAGAGA
CAAAATTTGTTTCAAGAGAAACTGCCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTC
AAGGGAGACAAATTTTGTTTCAAGGAAAACAGATTCAAAGATTTTGTTTCAAAGGAAACTGTCTC
AAGAGACACAAAATT
Found at i:459691 original size:139 final size:138
Alignment explanation
Indices: 459480--459749 Score: 409
Period size: 139 Copynumber: 1.9 Consensus size: 138
459470 TCAAGAGAGA
* * *
459480 CAAAATTTTATTTCAAGGGAAACTGTCTCAATAGAGACAAAATTTGTTTCAAGAGAAACTGTCTC
1 CAAAATTTTATTTCAAAGGAAACTGTCTCAAGAGACACAAAATTTGTTTCAAGAGAAACTGTCTC
* *
459545 AAGAGAGACAAAACTTAGTTCCAAAAGAAACTT-TCTCAAGGGAGACGAAATTTGTTTCAAG-GA
66 AAGAGAGACAAAACTTAGTTCCAAAAGAAA-TTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGA
459608 AAACATATT
130 AAACATATT
*
459617 CAAAGATTTTGTTTCAAAGGAAACTGTCTCAAGAGACACAAAACTTTGTTTCAAGAGAAACTGTC
1 CAAA-ATTTTATTTCAAAGGAAACTGTCTCAAGAGACACAAAA-TTTGTTTCAAGAGAAACTGTC
* * **
459682 TCAAGAGAGACAAAACTTTGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTGTTTCAAGAG
64 TCAAGAGAGACAAAACTTAGTTCCAAAAGAAATTGTCTCAAGAGAGACAAAATTTGTTTCAAGAG
459747 AAA
129 AAA
459750 CTGCCTCAAG
Statistics
Matches: 119, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
137 4 0.03
138 36 0.30
139 75 0.63
140 4 0.03
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (138 bp):
CAAAATTTTATTTCAAAGGAAACTGTCTCAAGAGACACAAAATTTGTTTCAAGAGAAACTGTCTC
AAGAGAGACAAAACTTAGTTCCAAAAGAAATTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAA
AACATATT
Found at i:459743 original size:21 final size:21
Alignment explanation
Indices: 459682--459747 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
459672 AGAAACTGTC
459682 TCAAGAGAGACAAAACTTTGTT
1 TCAAGAGAGACAAAA-TTTGTT
*
459704 TCAAG-G-G---AAA-TTGTC
1 TCAAGAGAGACAAAATTTGTT
459719 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
459740 TCAAGAGA
1 TCAAGAGA
459748 AACTGCCTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
15 9 0.25
16 1 0.03
17 4 0.11
20 4 0.11
21 13 0.36
22 5 0.14
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.26
Consensus pattern (21 bp):
TCAAGAGAGACAAAATTTGTT
Found at i:459919 original size:21 final size:21
Alignment explanation
Indices: 459857--459919 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
459847 GGAAACTGTC
459857 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
*
459878 TCAAG-G-G---AAA-TTGTC
1 TCAAGAGAGACAAAATTTGTT
459893 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
*
459914 TTAAGA
1 TCAAGA
459920 AAAACTGTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
15 9 0.27
16 4 0.12
17 1 0.03
19 1 0.03
20 4 0.12
21 14 0.42
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.29
Consensus pattern (21 bp):
TCAAGAGAGACAAAATTTGTT
Found at i:459967 original size:37 final size:35
Alignment explanation
Indices: 459853--459976 Score: 158
Period size: 36 Copynumber: 3.4 Consensus size: 35
459843 CAAGGGAAAC
* *
459853 TGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAAT
1 TGTCTCAAGAGAGACAAAATTTGTTTTAA-GAAAAT
*
459889 TGTCTCAAGAGAGACAAAATTTGTTTTAAGAAAAAC
1 TGTCTCAAGAGAGACAAAATTTGTTTTAAG-AAAAT
* *
459925 TGTCTCAAGAGAGACAAAACTTTGTTTTGAGTAAAT
1 TGTCTCAAGAGAGACAAAA-TTTGTTTTAAGAAAAT
*
459961 TAGTCTCAAGCGAGAC
1 T-GTCTCAAGAGAGAC
459977 TACCCCTTGT
Statistics
Matches: 78, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
35 1 0.01
36 54 0.69
37 23 0.29
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (35 bp):
TGTCTCAAGAGAGACAAAATTTGTTTTAAGAAAAT
Found at i:464749 original size:7 final size:7
Alignment explanation
Indices: 464739--464775 Score: 56
Period size: 7 Copynumber: 5.0 Consensus size: 7
464729 AGAAAAAATG
464739 AATAATAA
1 AATAAT-A
464747 ATATAATA
1 A-ATAATA
464755 AATAATA
1 AATAATA
464762 AATAATA
1 AATAATA
464769 AATAATA
1 AATAATA
464776 TATTATCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 20 0.71
8 3 0.11
9 5 0.18
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
AATAATA
Found at i:465286 original size:37 final size:37
Alignment explanation
Indices: 465233--465340 Score: 153
Period size: 37 Copynumber: 2.9 Consensus size: 37
465223 TTGTGGATCT
* * *
465233 TATTTTTAGGAATTTGAATCATAGTAGAACTTTATCC
1 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCC
* *
465270 TATTTCTAGGAGTTTGAATCCTAGTAAAACTCTATCC
1 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCC
* *
465307 TATTTTTAGGAGTTTGAATCCTAATAAAACTCTA
1 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTA
465341 ACGTTATGTT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (37 bp):
TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCC
Found at i:466846 original size:12 final size:12
Alignment explanation
Indices: 466819--466847 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
466809 TCATCAAAAA
466819 ATATTTTTAAAT
1 ATATTTTTAAAT
466831 -TATTTTTAAAT
1 ATATTTTTAAAT
466842 ATATTT
1 ATATTT
466848 GATAAGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
ATATTTTTAAAT
Found at i:470055 original size:32 final size:32
Alignment explanation
Indices: 470019--470081 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
470009 TCTTCTTCCG
**
470019 AATCTTTGGGAGTTATACTGTTCTATATTTTT
1 AATCTTTGGGAGTTATACCATTCTATATTTTT
470051 AATCTTTGGGAGTTATACCATTCTATATTTT
1 AATCTTTGGGAGTTATACCATTCTATATTTT
470082 AACAATGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.24, C:0.11, G:0.14, T:0.51
Consensus pattern (32 bp):
AATCTTTGGGAGTTATACCATTCTATATTTTT
Found at i:470845 original size:19 final size:19
Alignment explanation
Indices: 470818--470854 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
470808 ATGACCAACA
* *
470818 AAATTGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
470837 AAATCGCAACGCGATCTC
1 AAATCGCAACGCGATCTC
470855 CAGTATCGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Found at i:471801 original size:24 final size:24
Alignment explanation
Indices: 471769--471822 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
471759 GTATTCGAAA
471769 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
471793 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
471817 TTTGAT
1 TTTGAT
471823 GATGTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:474092 original size:18 final size:18
Alignment explanation
Indices: 474069--474103 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
474059 AGAAAAAGGC
*
474069 AATCAAAATCGCAATCAA
1 AATCAAAATCCCAATCAA
474087 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
474104 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:474414 original size:140 final size:140
Alignment explanation
Indices: 474161--474443 Score: 521
Period size: 140 Copynumber: 2.0 Consensus size: 140
474151 GCAAACGTTG
*
474161 TATTATGTGTATTTTATATGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGT
1 TATTATGTGTATTTTATATGTAAACTTTTAACATTTTCAGTTAGACATGTATTAGTAACTTGAGT
474226 TTGAACATTGCTATGATCTGTTCAGTTATTATCACTTATTACACATTCATTTGAATATCGCAACG
66 TTGAACATTGCTATGATCTGTTCAGTTATTATCACTTATTACACATTCATTTGAATATCGCAACG
474291 CGAATTTGAC
131 CGAATTTGAC
* *
474301 TATTATGTGTATTTTATGTGTGAACTTTTAACATTTTCAGTTAGACATGTATTAGTAACTTGAGT
1 TATTATGTGTATTTTATATGTAAACTTTTAACATTTTCAGTTAGACATGTATTAGTAACTTGAGT
* *
474366 TTGAACATTGCTATGATCTGTTCAGTTGTTATCACTTATTACATATTCATTTGAATATCGCAACG
66 TTGAACATTGCTATGATCTGTTCAGTTATTATCACTTATTACACATTCATTTGAATATCGCAACG
474431 CGAATTTGAC
131 CGAATTTGAC
474441 TAT
1 TAT
474444 CGTAACGTGA
Statistics
Matches: 138, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
140 138 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (140 bp):
TATTATGTGTATTTTATATGTAAACTTTTAACATTTTCAGTTAGACATGTATTAGTAACTTGAGT
TTGAACATTGCTATGATCTGTTCAGTTATTATCACTTATTACACATTCATTTGAATATCGCAACG
CGAATTTGAC
Found at i:474439 original size:20 final size:20
Alignment explanation
Indices: 474414--474584 Score: 192
Period size: 20 Copynumber: 8.8 Consensus size: 20
474404 TTACATATTC
*
474414 ATTTGAATATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
474434 ATTTGACTATCGTAACGTGA
1 ATTTGACTATCGCAACGCGA
* *
474454 ATTTGATTATCGCAACTC-A
1 ATTTGACTATCGCAACGCGA
*
474473 A----A-AATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
474488 ATTTGACTATTGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
474508 ATATGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
474528 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* ** *
474548 ATTTGATTATTACAACGGGA
1 ATTTGACTATCGCAACGCGA
474568 ATTTGACTATCGCAACG
1 ATTTGACTATCGCAACG
474585 AGAAAATCGC
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
14 9 0.07
15 3 0.02
19 3 0.02
20 109 0.88
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:474503 original size:34 final size:38
Alignment explanation
Indices: 474414--474623 Score: 159
Period size: 40 Copynumber: 5.6 Consensus size: 38
474404 TTACATATTC
* * * *
474414 ATTTGAATATCGCAACGCGAATTTGACTATCGTAACGTGA
1 ATTTGACTATCGCAACGCGAA-TAGAC-ATCGCAACGCGA
* *
474454 ATTTGATTATCGCAACTC-AA-A-A-ATCGCAACGCGA
1 ATTTGACTATCGCAACGCGAATAGACATCGCAACGCGA
*
474488 ATTTGACTATTGCAACGCGAATATGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGAATA-GAC-ATCGCAACGCGA
* * ** *
474528 ATTTGACTATCGCAACGCGAATTTGATTATTACAACGGGA
1 ATTTGACTATCGCAACGCGAA-TAGA-CATCGCAACGCGA
* *
474568 ATTTGACTATCGCAACGAG-A-A-A-ATCGCAAAGC-A
1 ATTTGACTATCGCAACGCGAATAGACATCGCAACGCGA
*
474601 TATTAGACTATCGCAACGCGAAT
1 -ATTTGACTATCGCAACGCGAAT
474624 TAACTTTCGT
Statistics
Matches: 137, Mismatches: 22, Indels: 26
0.74 0.12 0.14
Matches are distributed among these distances:
33 1 0.01
34 48 0.35
35 3 0.02
36 3 0.02
38 1 0.01
39 3 0.02
40 77 0.56
41 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (38 bp):
ATTTGACTATCGCAACGCGAATAGACATCGCAACGCGA
Found at i:474792 original size:36 final size:36
Alignment explanation
Indices: 474752--474870 Score: 105
Period size: 36 Copynumber: 3.2 Consensus size: 36
474742 TTTCATTTCA
*
474752 ATCAATTAAATAAGCACAAATAAGAATTATTTACAC
1 ATCAATTAAAAAAGCACAAATAAGAATTATTTACAC
* *** * *
474788 ATCAATTAAACAAATCAACTTTTACA-AATCAACTTTTACAA
1 ATCAATTAAA-AAAGC-ACAAATA-AGAAT-TA--TTTACAC
*
474829 ATCAATTAAACAAGCACAAATAAGAATTATTTACAC
1 ATCAATTAAAAAAGCACAAATAAGAATTATTTACAC
474865 ATCAAT
1 ATCAAT
474871 ATTAAACAAA
Statistics
Matches: 62, Mismatches: 14, Indels: 14
0.69 0.16 0.16
Matches are distributed among these distances:
36 22 0.35
37 3 0.05
38 9 0.15
39 9 0.15
40 3 0.05
41 16 0.26
ACGTcount: A:0.51, C:0.17, G:0.03, T:0.29
Consensus pattern (36 bp):
ATCAATTAAAAAAGCACAAATAAGAATTATTTACAC
Found at i:474816 original size:14 final size:14
Alignment explanation
Indices: 474797--474833 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
474787 CATCAATTAA
474797 ACAAATCAACTTTT
1 ACAAATCAACTTTT
474811 ACAAATCAACTTTT
1 ACAAATCAACTTTT
474825 ACAAATCAA
1 ACAAATCAA
474834 TTAAACAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:474844 original size:77 final size:79
Alignment explanation
Indices: 474751--474898 Score: 273
Period size: 77 Copynumber: 1.9 Consensus size: 79
474741 TTTTCATTTC
*
474751 AATCAATTAAATAAGCACAAATAAGAATTATTTACACATC-A-ATTAAACAAATCAACTTTTACA
1 AATCAATTAAACAAGCACAAATAAGAATTATTTACACATCAATATTAAACAAATCAACTTTTACA
474814 AATCAACTTTTACA
66 AATCAACTTTTACA
474828 AATCAATTAAACAAGCACAAATAAGAATTATTTACACATCAATATTAAACAAATCAACTTTTACA
1 AATCAATTAAACAAGCACAAATAAGAATTATTTACACATCAATATTAAACAAATCAACTTTTACA
474893 AATCAA
66 AATCAA
474899 TTAAACAAAC
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
77 39 0.57
78 1 0.01
79 28 0.41
ACGTcount: A:0.52, C:0.17, G:0.03, T:0.28
Consensus pattern (79 bp):
AATCAATTAAACAAGCACAAATAAGAATTATTTACACATCAATATTAAACAAATCAACTTTTACA
AATCAACTTTTACA
Found at i:476307 original size:21 final size:21
Alignment explanation
Indices: 476283--476351 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
476273 TGAATCGGGA
*
476283 TCTTGAATGGTGGGAGGGACC
1 TCTTGAACGGTGGGAGGGACC
* * ** *
476304 TCTTCAACGATGACAGGGGCC
1 TCTTGAACGGTGGGAGGGACC
476325 TCTTGAACGGTGGGAGGGGA-C
1 TCTTGAACGGTGGGA-GGGACC
476346 TCTTGA
1 TCTTGA
476352 GGATTATAGG
Statistics
Matches: 36, Mismatches: 11, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
21 33 0.92
22 3 0.08
ACGTcount: A:0.20, C:0.19, G:0.38, T:0.23
Consensus pattern (21 bp):
TCTTGAACGGTGGGAGGGACC
Found at i:476921 original size:20 final size:20
Alignment explanation
Indices: 476879--476940 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
476869 ATAGTTTCTT
* *
476879 AAACTTAAAATCGAAACAC-A
1 AAACTT-AAATCGCAACGCGA
476899 AAACTTAAATCGCAACGCGA
1 AAACTTAAATCGCAACGCGA
* *
476919 AAA-TGACTATCGCAACGCGA
1 AAACTTA-AATCGCAACGCGA
476939 AA
1 AA
476941 TGACTATCGC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 12 0.33
20 24 0.67
ACGTcount: A:0.50, C:0.23, G:0.13, T:0.15
Consensus pattern (20 bp):
AAACTTAAATCGCAACGCGA
Found at i:476967 original size:20 final size:19
Alignment explanation
Indices: 476907--476974 Score: 100
Period size: 20 Copynumber: 3.5 Consensus size: 19
476897 CAAAACTTAA
476907 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCG-AAATGACT
476927 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
476946 ATCGCAACGCGAATTGGACT
1 ATCGCAACGCGAAAT-GACT
*
476966 ATGGCAACG
1 ATCGCAACG
476975 GGATAATCGC
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
19 22 0.49
20 23 0.51
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.16
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:477031 original size:19 final size:19
Alignment explanation
Indices: 476979--477032 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
476969 GCAACGGGAT
*
476979 AATCGCAATGCGAAATAAA
1 AATCGCAATGCGAAACAAA
* * *
476998 AATTGCAACGCGAAACCAA
1 AATCGCAATGCGAAACAAA
*
477017 AATCGCAATGTGAAAC
1 AATCGCAATGCGAAAC
477033 TAAATTCGCG
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.48, C:0.20, G:0.17, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAACAAA
Found at i:477135 original size:20 final size:20
Alignment explanation
Indices: 477110--477156 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
477100 GATTATCCCA
477110 TTGCGATAGTCAAATTCGCG
1 TTGCGATAGTCAAATTCGCG
**
477130 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAAATTCGCG
477150 TTGCGAT
1 TTGCGAT
477157 TTAAGTTTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCGCG
Found at i:479106 original size:21 final size:20
Alignment explanation
Indices: 479066--479175 Score: 90
Period size: 20 Copynumber: 5.8 Consensus size: 20
479056 TCTGAAACTT
*
479066 AAAATTGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
479086 AAAATCGCAACACGAAAAATG
1 AAAATCGCAACACG-AAAATG
**
479107 ACTATCGC-A-ACG---A-G
1 AAAATCGCAACACGAAAATG
* *
479121 ATAATCGCAACGCG-AAATG
1 AAAATCGCAACACGAAAATG
479140 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** *
479160 ACTATCGCAACGCGAA
1 AAAATCGCAACACGAA
479176 TTTGACTATC
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
14 7 0.10
15 2 0.03
16 2 0.03
18 1 0.01
19 16 0.22
20 32 0.44
21 12 0.17
ACGTcount: A:0.48, C:0.22, G:0.17, T:0.13
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:479181 original size:20 final size:19
Alignment explanation
Indices: 479124--479186 Score: 72
Period size: 20 Copynumber: 3.2 Consensus size: 19
479114 CAACGAGATA
**
479124 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
*
479143 ATCGCAACACGAAAATGACT
1 ATCGCAACGCG-AAATGACT
*
479163 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAA-ATGACT
479183 ATCG
1 ATCG
479187 TTGCGATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
19 12 0.32
20 25 0.68
ACGTcount: A:0.40, C:0.24, G:0.19, T:0.17
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:479587 original size:22 final size:22
Alignment explanation
Indices: 479561--479611 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
479551 GATGGAGATA
*
479561 GACGGATTTTGCCAGAGATGGG
1 GACGGATTTCGCCAGAGATGGG
*
479583 GACGGATTTCGTCAGAGATGGG
1 GACGGATTTCGCCAGAGATGGG
479605 GACGGAT
1 GACGGAT
479612 GTCGTCGTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.24, C:0.14, G:0.41, T:0.22
Consensus pattern (22 bp):
GACGGATTTCGCCAGAGATGGG
Found at i:479616 original size:22 final size:22
Alignment explanation
Indices: 479573--479617 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
479563 CGGATTTTGC
*
479573 CAGAGATGGGGACGGATTTCGT
1 CAGAGATGGGGACGGATGTCGT
479595 CAGAGATGGGGACGGATGTCGT
1 CAGAGATGGGGACGGATGTCGT
479617 C
1 C
479618 GTAGAGAGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.16, G:0.42, T:0.20
Consensus pattern (22 bp):
CAGAGATGGGGACGGATGTCGT
Found at i:479803 original size:20 final size:20
Alignment explanation
Indices: 479778--479849 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
479768 ATTTTGTATT
* *
479778 ATCGCGTTGCGATAGTCAGA
1 ATCGCATTGCGATAGTCAAA
* * *
479798 ATCGCGTTGCGAT-TTACATA
1 ATCGCATTGCGATAGT-CAAA
*
479818 TTCGCATTGCGATAGTCAAA
1 ATCGCATTGCGATAGTCAAA
479838 ATCGCATTGCGA
1 ATCGCATTGCGA
479850 ATCTGGAAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 1 0.02
20 41 0.95
21 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAAA
Found at i:479899 original size:19 final size:19
Alignment explanation
Indices: 479875--479911 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
479865 TGCTATACTG
479875 GAGATCGCATTGCGATTTA
1 GAGATCGCATTGCGATTTA
479894 GAGATCGCATTGCGATTT
1 GAGATCGCATTGCGATTT
479912 TGTTGGTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (19 bp):
GAGATCGCATTGCGATTTA
Found at i:491243 original size:36 final size:35
Alignment explanation
Indices: 491192--491331 Score: 158
Period size: 36 Copynumber: 3.9 Consensus size: 35
491182 ATAAGAAGAA
* *
491192 GAACGTAAGGAAGCATC-AGTACTTTCGATTCAAAGT
1 GAACGGAAGGAAGCATCGA-CACTTTCGATTC-AAGT
* * *
491228 GAGCGGAAGGAAGCATCGACACTTTTGATTCAAGAA
1 GAACGGAAGGAAGCATCGACACTTTCGATTCAAG-T
* *
491264 GAATGAAAGGAAGCATCGACACTTTCGATTCAAGT
1 GAACGGAAGGAAGCATCGACACTTTCGATTCAAGT
*
491299 GAACGGAAGGAAGCAT-AAGCACTTTCGATTCAA
1 GAACGGAAGGAAGCATCGA-CACTTTCGATTCAA
491332 TTGTTCATCT
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
34 1 0.01
35 31 0.35
36 55 0.62
37 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (35 bp):
GAACGGAAGGAAGCATCGACACTTTCGATTCAAGT
Found at i:491331 original size:71 final size:72
Alignment explanation
Indices: 491187--491331 Score: 197
Period size: 71 Copynumber: 2.0 Consensus size: 72
491177 GGTGAATAAG
* * * *
491187 AAGAAGAACGTAAGGAAGCATCAGTACTTTCGATTCAAAGTGAGCGGAAGGAAGCATCGACACTT
1 AAGAAGAACGAAAGGAAGCATCAGCACTTTCGATTCAAAGTGAACGGAAGGAAGCATAGACACTT
*
491252 TTGATTC
66 TCGATTC
*
491259 AAGAAGAATGAAAGGAAGCATC-GACACTTTCGATTC-AAGTGAACGGAAGGAAGCATA-AGCAC
1 AAGAAGAACGAAAGGAAGCATCAG-CACTTTCGATTCAAAGTGAACGGAAGGAAGCATAGA-CAC
491321 TTTCGATTC
64 TTTCGATTC
491330 AA
1 AA
491332 TTGTTCATCT
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
70 1 0.02
71 33 0.51
72 31 0.48
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.21
Consensus pattern (72 bp):
AAGAAGAACGAAAGGAAGCATCAGCACTTTCGATTCAAAGTGAACGGAAGGAAGCATAGACACTT
TCGATTC
Found at i:495303 original size:19 final size:19
Alignment explanation
Indices: 495276--495323 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
495266 TAAGTATGAC
* *
495276 TTTTGTCATGCTTAGCTAA
1 TTTTCTCATACTTAGCTAA
495295 TTTTCTCATACTTAGCTAA
1 TTTTCTCATACTTAGCTAA
495314 TTTTCTCATA
1 TTTTCTCATA
495324 AGTCGAGAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.23, C:0.19, G:0.08, T:0.50
Consensus pattern (19 bp):
TTTTCTCATACTTAGCTAA
Found at i:496182 original size:5 final size:5
Alignment explanation
Indices: 496172--496206 Score: 61
Period size: 5 Copynumber: 6.8 Consensus size: 5
496162 AATACTCAGA
496172 TCGAC TCGAC TCGAC TCGAC TCGAGC TCGAC TCGA
1 TCGAC TCGAC TCGAC TCGAC TCGA-C TCGAC TCGA
496207 ATTCTTAACG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.20, C:0.37, G:0.23, T:0.20
Consensus pattern (5 bp):
TCGAC
Found at i:496715 original size:19 final size:19
Alignment explanation
Indices: 496688--496735 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
496678 TAAGTATGAC
* *
496688 TTTTGTCATGCTTAGCTAA
1 TTTTCTCATACTTAGCTAA
496707 TTTTCTCATACTTAGCTAA
1 TTTTCTCATACTTAGCTAA
496726 TTTTCTCATA
1 TTTTCTCATA
496736 AGTCGAGAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.23, C:0.19, G:0.08, T:0.50
Consensus pattern (19 bp):
TTTTCTCATACTTAGCTAA
Found at i:498248 original size:11 final size:10
Alignment explanation
Indices: 498232--498261 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
498222 CGTTAAGAAT
498232 TCGAGTCGAG
1 TCGAGTCGAG
498242 CTCGAGTCGAG
1 -TCGAGTCGAG
498253 TCGAGTCGA
1 TCGAGTCGA
498262 TCTGAGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.20, C:0.23, G:0.37, T:0.20
Consensus pattern (10 bp):
TCGAGTCGAG
Found at i:498251 original size:5 final size:5
Alignment explanation
Indices: 498232--498261 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
498222 CGTTAAGAAT
498232 TCGAG TCGAG CTCGAG TCGAG TCGAG TCGA
1 TCGAG TCGAG -TCGAG TCGAG TCGAG TCGA
498262 TCTGAGTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.20, C:0.23, G:0.37, T:0.20
Consensus pattern (5 bp):
TCGAG
Found at i:498251 original size:16 final size:15
Alignment explanation
Indices: 498232--498261 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
498222 CGTTAAGAAT
498232 TCGAGTCGAGCTCGAG
1 TCGAGTCGAG-TCGAG
498248 TCGAGTCGAGTCGA
1 TCGAGTCGAGTCGA
498262 TCTGAGTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.20, C:0.23, G:0.37, T:0.20
Consensus pattern (15 bp):
TCGAGTCGAGTCGAG
Found at i:499567 original size:21 final size:21
Alignment explanation
Indices: 499543--499595 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
499533 ATTCTGACTA
499543 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
499564 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
499585 TCGCAATGCGA
1 TCGCATTGCGA
499596 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:499610 original size:20 final size:20
Alignment explanation
Indices: 499585--499711 Score: 148
Period size: 20 Copynumber: 6.3 Consensus size: 20
499575 TTTTCCTAAT
499585 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* ** *
499605 TCGCAACGCGAATTTGAAAAA
1 TCGCAATGCGAATACG-TAAA
* *
499626 TCGTAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
*
499646 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
*
499666 TTGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
499686 TCGCAATGCGAAT-CTGTAAA
1 TCGCAATGCGAATAC-GTAAA
*
499706 TTGCAA
1 TCGCAA
499712 CGAGATTATG
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
19 1 0.01
20 75 0.83
21 14 0.16
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:503048 original size:20 final size:20
Alignment explanation
Indices: 503023--503093 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
503013 TAACGCGGAA
503023 ATCGCAACGCGAATATGACT
1 ATCGCAACGCGAATATGACT
* *
503043 ATCGCAACACGAAAATGACT
1 ATCGCAACGCGAATATGACT
* * *
503063 ATCGCAATGCGGAAT-TTAAT
1 ATCGCAACGC-GAATATGACT
503083 ATCGCAACGCG
1 ATCGCAACGCG
503094 GAACGCGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
19 1 0.02
20 38 0.90
21 3 0.07
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGAATATGACT
Found at i:504796 original size:42 final size:42
Alignment explanation
Indices: 504689--504800 Score: 109
Period size: 42 Copynumber: 2.7 Consensus size: 42
504679 TCTAGAATGT
* * * * *
504689 TGGGAGCGACCTCTTCAACGATGACAGTGGCCTCTTAAACGG
1 TGGGAGAGGCCTCTTGAACGATGACAGGGGCCTCTTAAACGA
* * ** * *
504731 TGGGAGGGGACTCTTGAGGGATGATAGGGGCCTCTTGAACGA
1 TGGGAGAGGCCTCTTGAACGATGACAGGGGCCTCTTAAACGA
504773 TAGGG-GAGGCCTCTTGAACGATGACAGG
1 T-GGGAGAGGCCTCTTGAACGATGACAGG
504801 TGAGTCGGGC
Statistics
Matches: 54, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
42 51 0.94
43 3 0.06
ACGTcount: A:0.23, C:0.20, G:0.37, T:0.21
Consensus pattern (42 bp):
TGGGAGAGGCCTCTTGAACGATGACAGGGGCCTCTTAAACGA
Found at i:505220 original size:24 final size:24
Alignment explanation
Indices: 505193--505247 Score: 110
Period size: 24 Copynumber: 2.3 Consensus size: 24
505183 TTTCAACACT
505193 TTGAAGTTAGTATTTGTCTTTTGG
1 TTGAAGTTAGTATTTGTCTTTTGG
505217 TTGAAGTTAGTATTTGTCTTTTGG
1 TTGAAGTTAGTATTTGTCTTTTGG
505241 TTGAAGT
1 TTGAAGT
505248 AATGCAATTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.18, C:0.04, G:0.25, T:0.53
Consensus pattern (24 bp):
TTGAAGTTAGTATTTGTCTTTTGG
Found at i:505327 original size:20 final size:20
Alignment explanation
Indices: 505304--505477 Score: 160
Period size: 20 Copynumber: 9.3 Consensus size: 20
505294 GAAACTTAAA
*
505304 ATCGCAACGCGAAAATGACT
1 ATCGCAATGCGAAAATGACT
505324 ATCGCAATGCGAAAATGACT
1 ATCGCAATGCGAAAATGACT
505344 ATCGCAATGCGAAAATGACT
1 ATCGCAATGCGAAAATGACT
**
505364 ATCGCAATGCGAATTTGACT
1 ATCGCAATGCGAAAATGACT
*
505384 ATCGCAAT--G-AGA-GA--
1 ATCGCAATGCGAAAATGACT
**
505398 ATCGCAATGCG-AAATGAAA
1 ATCGCAATGCGAAAATGACT
505417 ATCGCAAT---AACAA--A--
1 ATCGCAATGCGAA-AATGACT
*
505431 ATCGCAACGCGAAAATGACT
1 ATCGCAATGCGAAAATGACT
**
505451 ATCGCAATGCGAATTTGACT
1 ATCGCAATGCGAAAATGACT
505471 ATCGCAA
1 ATCGCAA
505478 CGAGAGAATC
Statistics
Matches: 130, Mismatches: 10, Indels: 28
0.77 0.06 0.17
Matches are distributed among these distances:
14 15 0.12
16 8 0.06
17 6 0.05
18 4 0.03
19 8 0.06
20 89 0.68
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.20
Consensus pattern (20 bp):
ATCGCAATGCGAAAATGACT
Found at i:505402 original size:34 final size:33
Alignment explanation
Indices: 505364--505459 Score: 111
Period size: 34 Copynumber: 2.8 Consensus size: 33
505354 GAAAATGACT
* * *
505364 ATCGCAATGCGAATTTGACTATCGCAATGAGAGA
1 ATCGCAATGCGAA-ATGACTATCGCAATGACAAA
** *
505398 ATCGCAATGCGAAATGAAAATCGCAATAACAAA
1 ATCGCAATGCGAAATGACTATCGCAATGACAAA
*
505431 ATCGCAACGCGAAAATGACTATCGCAATG
1 ATCGCAATGCG-AAATGACTATCGCAATG
505460 CGAATTTGAC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
33 24 0.47
34 27 0.53
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.19
Consensus pattern (33 bp):
ATCGCAATGCGAAATGACTATCGCAATGACAAA
Found at i:505547 original size:34 final size:34
Alignment explanation
Indices: 505503--505624 Score: 129
Period size: 34 Copynumber: 3.4 Consensus size: 34
505493 GCGATTTTCA
*
505503 TTTCGCATTGCGATTCTTTCGTTGAGATAGTCAA
1 TTTCGCATTGCGATTCTTTCGTTGAGATAGTCAT
*
505537 ATTCGCATTGCGATAGTCATTTTCGCATTGCA-ATAGTCAT
1 TTTCGCATTGCGAT--TC--TTTCG--TTG-AGATAGTCAT
* *
505577 TTTCGCATTGCGATTCTCTCGTTGCGATAGTCAT
1 TTTCGCATTGCGATTCTTTCGTTGAGATAGTCAT
*
505611 TTTCGCGTTGCGAT
1 TTTCGCATTGCGAT
505625 AGTCATTTTC
Statistics
Matches: 74, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
34 37 0.50
36 6 0.08
38 7 0.09
40 23 0.31
41 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.40
Consensus pattern (34 bp):
TTTCGCATTGCGATTCTTTCGTTGAGATAGTCAT
Found at i:505553 original size:20 final size:20
Alignment explanation
Indices: 505528--505647 Score: 153
Period size: 20 Copynumber: 6.3 Consensus size: 20
505518 CTTTCGTTGA
**
505528 GATAGTCAAATTCGCATTGC
1 GATAGTCATTTTCGCATTGC
505548 GATAGTCATTTTCGCATTGC
1 GATAGTCATTTTCGCATTGC
*
505568 AATAGTCATTTTCGCATTGC
1 GATAGTCATTTTCGCATTGC
*
505588 GAT--TC--TCTCG--TTGC
1 GATAGTCATTTTCGCATTGC
*
505602 GATAGTCATTTTCGCGTTGC
1 GATAGTCATTTTCGCATTGC
505622 GATAGTCATTTTCGCATTGC
1 GATAGTCATTTTCGCATTGC
505642 GATAGT
1 GATAGT
505648 AAACTATTCT
Statistics
Matches: 87, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.08
16 6 0.07
18 6 0.07
20 68 0.78
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (20 bp):
GATAGTCATTTTCGCATTGC
Found at i:505606 original size:74 final size:74
Alignment explanation
Indices: 505503--505647 Score: 236
Period size: 74 Copynumber: 2.0 Consensus size: 74
505493 GCGATTTTCA
*
505503 TTTCGCATTGCGATTCTTTCGTTGAGATAGTCAAATTCGCATTGCGATAGTCATTTTCGCATTGC
1 TTTCGCATTGCGATTCTCTCGTTGAGATAGTCAAATTCGCATTGCGATAGTCATTTTCGCATTGC
505568 AATAGTCAT
66 AATAGTCAT
* ** *
505577 TTTCGCATTGCGATTCTCTCGTTGCGATAGTCATTTTCGCGTTGCGATAGTCATTTTCGCATTGC
1 TTTCGCATTGCGATTCTCTCGTTGAGATAGTCAAATTCGCATTGCGATAGTCATTTTCGCATTGC
*
505642 GATAGT
66 AATAGT
505648 AAACTATTCT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (74 bp):
TTTCGCATTGCGATTCTCTCGTTGAGATAGTCAAATTCGCATTGCGATAGTCATTTTCGCATTGC
AATAGTCAT
Found at i:507520 original size:20 final size:20
Alignment explanation
Indices: 507497--507563 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
507487 CTGAAACTTT
507497 AAATCGCAACACGAAAATGA
1 AAATCGCAACACGAAAATGA
507517 AAATCGCAACACGAAAATGA
1 AAATCGCAACACGAAAATGA
** **
507537 CTATCGCAATGCG-AAATGA
1 AAATCGCAACACGAAAATGA
507556 AAATCGCA
1 AAATCGCA
507564 TTGCGATTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 12 0.29
20 29 0.71
ACGTcount: A:0.49, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
AAATCGCAACACGAAAATGA
Found at i:507630 original size:20 final size:20
Alignment explanation
Indices: 507576--507631 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
507566 GCGATTCTCT
**
507576 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
* *
507596 CATTTCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
507616 CGTTGCGATAGTCATT
1 CGTTGCGATAGTCATT
507632 CTCGGTTTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:508237 original size:21 final size:20
Alignment explanation
Indices: 508198--508312 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
508188 CGATAGTCAG
508198 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
508218 ATTCGCATTACGATTTTACGT
1 ATTCGCATTGCGA-TTTACGT
*
508239 ATTCGCATTGCAATTTACGT
1 ATTCGCATTGCGATTTACGT
* * * **
508259 AATCGCATTGTGATTTTCCAA
1 ATTCGCATTGCGA-TTTACGT
* * *
508280 ATTCACGTTGCGATTTATGT
1 ATTCGCATTGCGATTTACGT
*
508300 ATTTGCATTGCGA
1 ATTCGCATTGCGA
508313 ATTAGGAAAA
Statistics
Matches: 73, Mismatches: 20, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
20 42 0.58
21 31 0.42
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.41
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:508245 original size:41 final size:41
Alignment explanation
Indices: 508198--508308 Score: 123
Period size: 41 Copynumber: 2.7 Consensus size: 41
508188 CGATAGTCAG
**
508198 ATTCGCATTGCGATTTACGTATTCGCATTACGATTTTACGT
1 ATTCGCATTGCGATTTACGTATTCGCATTACGATTTTACAA
* * ** *
508239 ATTCGCATTGCAATTTACGTAATCGCATTGTGATTTTCCAA
1 ATTCGCATTGCGATTTACGTATTCGCATTACGATTTTACAA
* * * *
508280 ATTCACGTTGCGATTTATGTATTTGCATT
1 ATTCGCATTGCGATTTACGTATTCGCATT
508309 GCGAATTAGG
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.42
Consensus pattern (41 bp):
ATTCGCATTGCGATTTACGTATTCGCATTACGATTTTACAA
Found at i:508334 original size:21 final size:21
Alignment explanation
Indices: 508308--508354 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
508298 GTATTTGCAT
508308 TGCGAATTAGGAAAATCGCAA
1 TGCGAATTAGGAAAATCGCAA
* *
508329 TGCGAATTTGGGAAATCGCAA
1 TGCGAATTAGGAAAATCGCAA
508350 TGCGA
1 TGCGA
508355 TAGTCAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.15, G:0.28, T:0.21
Consensus pattern (21 bp):
TGCGAATTAGGAAAATCGCAA
Found at i:512419 original size:134 final size:134
Alignment explanation
Indices: 512200--513247 Score: 1145
Period size: 134 Copynumber: 7.8 Consensus size: 134
512190 ATTTCACTAT
* ** * * * *
512200 TCTTCAGGGAAGATTGAATC-GAGCGTGATTTGTTTCGCTGCTCTTCAAGAATACCAAATCTGGA
1 TCTTCAAGGAAGATTGAATCAGA-ATTGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAA
* * * *
512264 AGAACAAGAATCTGCTTCACTACTCTTTAGGGGAGATCAGATTCGAGAAAACTTTGATCCACTTC
65 AGAAGAAGAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATTCACTTC
*
512329 ACTGC
130 GCTGC
* * *
512334 TCTTCAAGGAAGGTTGAATCAGAATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAA
1 TCTTCAAGGAAGATTGAATCAGAATTGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAA
* * * *
512399 GAAGACGGATCTGCTCCACTACTCTTTA-GGGAGATCAGACTCGAGAAAACTTTGATCCACTTCA
66 GAAGAAGAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATTCACTTCG
*
512463 CTTC
131 CTGC
* * * * ** *
512467 TCTTCAGGGACGGTTGAATCAGAATTGATTTGTTTAACTGCTCTTTAGGAAGACCAAATCTGAAA
1 TCTTCAAGGAAGATTGAATCAGAATTGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAA
* * * * * * *
512532 GAAGAATAATCTGTTCCGCTAATCTTTAGGGGAGATCAGATTCGAGAATAA-TTTAATTCACTTT
66 GAAGAAGAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAA-AACTTTGATTCACTTC
512596 GCTGC
130 GCTGC
* * * * * *
512601 TCTTCAGGGAGGATTGAATCA-AATTTGATTTGTTTCACTTCTCTTCAGGAAGACCAACTCT-AA
1 TCTTCAAGGAAGATTGAATCAGAA-TTGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAA
* *
512664 CAGAAGAAGAATAC-GCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATTCACT
65 -AGAAGAAGAAT-CTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATTCACT
* *
512728 TCGTTGT
128 TCGCTGC
* * * * * * *
512735 TCTTTAGGGAAGATTGAAT-TGAACATGATTTGCTTCGTTGCTCTTTAGGAATACCAAATCTGAA
1 TCTTCAAGGAAGATTGAATCAGAA-TTGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAA
* * ** *
512799 AGGAGAAGAATCGGCTCTGCTACTCTTTAGGGGAGGTCAGACTCGAGAAAACTTTGATTCACTTC
65 AGAAGAAGAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATTCACTTC
512864 GCTGC
130 GCTGC
* * * * * * *
512869 TCTTCAAGAAAGATTGAATCA-AATGTGATTTCCTTCCCTGTTATTCAAGAAAACCAAATCTGAA
1 TCTTCAAGGAAGATTGAATCAGAAT-TGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAA
* * ** * *
512933 AGAAGAAGAATATGGTCCGTTACTCTTTAGGGGAGATCATACTCAAGAATAA-TTTGATTCACTT
65 AGAAGAAGAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAA-AACTTTGATTCACTT
512997 CGCTGC
129 CGCTGC
* * * * *
513003 TCTTCAGGGAAAATTGAATC-GAATTTGATTTACTTCGCTGCTTTTCAGGAAGACCAAATCTGAC
1 TCTTCAAGGAAGATTGAATCAGAA-TTGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAA
* * *
513067 AGAAGAAGAATATGCTCCACTACTCTTTA-AGGATG-TCAGACTCGAGAAAATTTTGATTCACTT
65 AGAAGAAGAATCTGCTCCACTACTCTTTAGGGGA-GATCAGACTCGAGAAAACTTTGATTCACTT
513130 CGCTGC
129 CGCTGC
*
513136 TCTTC-AGGAAAGATTGAAT--GAATTTGATTTACTTCGCTGCTCTTCAGGAAGACCAAATCTGA
1 TCTTCAAGG-AAGATTGAATCAGAA-TTGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGA
* * * *
513198 AATAAGAAGAATATGCTCCGCTACTATTTAGGGGAGATCAGACTCGAGAA
64 AAGAAGAAGAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAA
513248 TAATTTTCTT
Statistics
Matches: 780, Mismatches: 114, Indels: 41
0.83 0.12 0.04
Matches are distributed among these distances:
132 73 0.09
133 188 0.24
134 509 0.65
135 10 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (134 bp):
TCTTCAAGGAAGATTGAATCAGAATTGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAA
GAAGAAGAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATTCACTTCG
CTGC
Found at i:514093 original size:206 final size:208
Alignment explanation
Indices: 513727--514112 Score: 555
Period size: 206 Copynumber: 1.9 Consensus size: 208
513717 TTAAAAAAAA
* * *
513727 TCATTTTCTGAAAACATTAAATGAGAAACTTTGAAAATCACTTTCTCATTTTTTGAAAATCACGT
1 TCATTTTCAGAAAACATTAAATGAGAAACTTTGAAAATCACTTTCCCATTTTTTCAAAATCACGT
* * * * * *
513792 GAAAACATCATGCCCTAAGGTTTTATAGATGGCCCGAATGACTTATCATCCTGCTCGAAAGACTA
66 GAAAAAATCATACCCTAAGGTCTTATAGATGGCCCGAAGGACTTATCATCCTACTCAAAAGACTA
513857 ACAGATGACCCAAAAGATTTAATCATCATGCTCGAAAAACTTACTGATGGAATGAAAGACTTACT
131 ACAGATGACCCAAAAGATTTAATCATCATGCTCGAAAAACTTACTGATGGAATGAAAGACTTACT
513922 AAGTAAAAAACTT
196 AAGTAAAAAACTT
** * * *
513935 TCATTTTCAGAAAAGTTTAAATGAGAAACTTTGAAAATCGCTTTCCCA-TTTTTCAAATTCATGT
1 TCATTTTCAGAAAACATTAAATGAGAAACTTTGAAAATCACTTTCCCATTTTTTCAAAATCACGT
* *
513999 GAAAAAATCCTACCC-ATAGGTCTTATAGATGGCCCGAAGGACTTAT--TTCTCACTCAAAAGAC
66 GAAAAAATCATACCCTA-AGGTCTTATAGATGGCCCGAAGGACTTATCATCCT-ACTCAAAAGAC
* * *
514061 TTACAGATGACCCAAAAGATTTAATCATCATGCTCGAAAGACTTAGTGATGG
129 TAACAGATGACCCAAAAGATTTAATCATCATGCTCGAAAAACTTACTGATGG
514113 CCCGAAGAAC
Statistics
Matches: 157, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
205 3 0.02
206 59 0.38
207 52 0.33
208 43 0.27
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (208 bp):
TCATTTTCAGAAAACATTAAATGAGAAACTTTGAAAATCACTTTCCCATTTTTTCAAAATCACGT
GAAAAAATCATACCCTAAGGTCTTATAGATGGCCCGAAGGACTTATCATCCTACTCAAAAGACTA
ACAGATGACCCAAAAGATTTAATCATCATGCTCGAAAAACTTACTGATGGAATGAAAGACTTACT
AAGTAAAAAACTT
Found at i:516072 original size:24 final size:24
Alignment explanation
Indices: 516045--516103 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
516035 TTGTTCATGT
*
516045 GGTATCGATACCAAAGGTAAGAGA
1 GGTATCGATACCAAAGGTAACAGA
*
516069 GGTATCGATACCAAAGGTATCAGA
1 GGTATCGATACCAAAGGTAACAGA
*
516093 AGTATCGATAC
1 GGTATCGATAC
516104 TCTCAAGATA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.20
Consensus pattern (24 bp):
GGTATCGATACCAAAGGTAACAGA
Found at i:523362 original size:14 final size:13
Alignment explanation
Indices: 523345--523405 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 13
523335 CCTTTTTTTA
*
523345 GTTTTAGGTTTTGG
1 GTTTTA-GTTTAGG
523359 GTTTTTAGTTTAGG
1 G-TTTTAGTTTAGG
*
523373 GTTTAAGGTTTAGTG
1 GTTTTA-GTTTAG-G
*
523388 TTTTTAGTTTTAGG
1 GTTTTAG-TTTAGG
523402 GTTT
1 GTTT
523406 AAGGGTTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
13 4 0.11
14 19 0.50
15 15 0.39
ACGTcount: A:0.13, C:0.00, G:0.30, T:0.57
Consensus pattern (13 bp):
GTTTTAGTTTAGG
Found at i:523381 original size:28 final size:29
Alignment explanation
Indices: 523345--523409 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 29
523335 CCTTTTTTTA
* *
523345 GTTTTAGGTTTTGGGTTTTTAG-TTTAGG
1 GTTTAAGGTTTAGGGTTTTTAGTTTTAGG
*
523373 GTTTAAGGTTTAGTGTTTTTAGTTTTAGG
1 GTTTAAGGTTTAGGGTTTTTAGTTTTAGG
523402 GTTTAAGG
1 GTTTAAGG
523410 GTTAAAGTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 19 0.58
29 14 0.42
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (29 bp):
GTTTAAGGTTTAGGGTTTTTAGTTTTAGG
Found at i:523382 original size:21 final size:21
Alignment explanation
Indices: 523339--523383 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
523329 TCAATACCTT
**
523339 TTTTTAGTTTTAGGTTTTGGG
1 TTTTTAGTTTTAGGTTTAAGG
523360 TTTTTAG-TTTAGGGTTTAAGG
1 TTTTTAGTTTTA-GGTTTAAGG
523381 TTT
1 TTT
523384 AGTGTTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (21 bp):
TTTTTAGTTTTAGGTTTAAGG
Found at i:523419 original size:29 final size:28
Alignment explanation
Indices: 523359--523419 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
523349 TAGGTTTTGG
* **
523359 GTTTTTAGTTTAGGGTTTAAGGTTTAGT
1 GTTTTTAGTTTAGGGTTTAAGGGTTAAA
523387 GTTTTTAGTTTTAGGGTTTAAGGGTTAAA
1 GTTTTTAG-TTTAGGGTTTAAGGGTTAAA
523416 GTTT
1 GTTT
523420 AGTGTTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.20, C:0.00, G:0.28, T:0.52
Consensus pattern (28 bp):
GTTTTTAGTTTAGGGTTTAAGGGTTAAA
Found at i:523420 original size:36 final size:36
Alignment explanation
Indices: 523366--523449 Score: 118
Period size: 36 Copynumber: 2.3 Consensus size: 36
523356 TGGGTTTTTA
*
523366 GTTT-AGGGTTTAAGGTTTAGTGTTTTTAGTTTTAGG
1 GTTTAAGGGTTTAAAGTTTAGTGTTTTTAGTTTT-GG
*
523402 GTTTAAGGG-TTAAAGTTTAGTGTTTTTAGTTTTGT
1 GTTTAAGGGTTTAAAGTTTAGTGTTTTTAGTTTTGG
523437 GTTTAAGGTGTTT
1 GTTTAAGG-GTTT
523450 GATTTAGGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
35 9 0.21
36 28 0.65
37 6 0.14
ACGTcount: A:0.18, C:0.00, G:0.29, T:0.54
Consensus pattern (36 bp):
GTTTAAGGGTTTAAAGTTTAGTGTTTTTAGTTTTGG
Found at i:523426 original size:29 final size:29
Alignment explanation
Indices: 523359--523427 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
523349 TAGGTTTTGG
* * **
523359 GTTTTTAG-TTTAGGGTTTAAGGTTTAGT
1 GTTTGTAGTTTTAGGGTTTAAGGGTTAAA
*
523387 GTTTTTAGTTTTAGGGTTTAAGGGTTAAA
1 GTTTGTAGTTTTAGGGTTTAAGGGTTAAA
523416 GTTTAGT-GTTTT
1 GTTT-GTAGTTTT
523428 TAGTTTTGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 8 0.23
29 26 0.74
30 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.28, T:0.54
Consensus pattern (29 bp):
GTTTGTAGTTTTAGGGTTTAAGGGTTAAA
Found at i:532975 original size:32 final size:32
Alignment explanation
Indices: 532932--533047 Score: 187
Period size: 32 Copynumber: 3.6 Consensus size: 32
532922 ATAAAATAAC
* *
532932 ACATGTTACATCATCATTTTGAATTATGTGAT
1 ACATGTCACATCATCATTTTAAATTATGTGAT
*
532964 ATATGTCACATCATCATTTTAAATTATGTGAT
1 ACATGTCACATCATCATTTTAAATTATGTGAT
*
532996 ACATGTCAGATCATCATTTTAAATTATGTGAT
1 ACATGTCACATCATCATTTTAAATTATGTGAT
*
533028 AGATGTCACATCATCATTTT
1 ACATGTCACATCATCATTTT
533048 TTATAATATA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 77 1.00
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (32 bp):
ACATGTCACATCATCATTTTAAATTATGTGAT
Found at i:533447 original size:9 final size:9
Alignment explanation
Indices: 533411--533613 Score: 140
Period size: 9 Copynumber: 22.6 Consensus size: 9
533401 TATATCCTAA
*
533411 GGTTTCTAG
1 GGTTTGTAG
*
533420 GATTTGTAG
1 GGTTTGTAG
** *
533429 TATTTATAG
1 GGTTTGTAG
*
533438 GGTTTTTAG
1 GGTTTGTAG
* *
533447 GATTGGTA-
1 GGTTTGTAG
*
533455 GGTTTATAG
1 GGTTTGTAG
*
533464 AGTTTGTTA-
1 GGTTTG-TAG
*
533473 GATTTGTAG
1 GGTTTGTAG
*
533482 GGTATGTAG
1 GGTTTGTAG
*
533491 GATTTGTAG
1 GGTTTGTAG
533500 GGTTTGTAG
1 GGTTTGTAG
*
533509 GGTTTTTAG
1 GGTTTGTAG
*
533518 GGTTTATAG
1 GGTTTGTAG
* *
533527 GATTTCTAG
1 GGTTTGTAG
*
533536 GGTTCGTAG
1 GGTTTGTAG
*
533545 GATTTGTAG
1 GGTTTGTAG
*
533554 GGTTTCTAG
1 GGTTTGTAG
*
533563 GGTTTCTAG
1 GGTTTGTAG
* * *
533572 GATTTTCTAA
1 G-GTTTGTAG
533582 GGTTTGTAG
1 GGTTTGTAG
*
533591 GGTTTGTAA
1 GGTTTGTAG
*
533600 GGTTTTTAG
1 GGTTTGTAG
533609 GGTTT
1 GGTTT
533614 AAAGTATATT
Statistics
Matches: 149, Mismatches: 41, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
8 7 0.05
9 133 0.89
10 9 0.06
ACGTcount: A:0.18, C:0.03, G:0.33, T:0.46
Consensus pattern (9 bp):
GGTTTGTAG
Found at i:536477 original size:38 final size:39
Alignment explanation
Indices: 536430--536507 Score: 122
Period size: 38 Copynumber: 2.0 Consensus size: 39
536420 CGAGTCGGGG
*
536430 TTTTTAAGTGTGATATTCGAGTCGAGT-TGGTTCGGGTT
1 TTTTTAAGTGTGATATTCGAGTCGAGTCGGGTTCGGGTT
* *
536468 TTTTTAAGTGTGATATTCGGGTCGGGTCGGGTTCGGGTT
1 TTTTTAAGTGTGATATTCGAGTCGAGTCGGGTTCGGGTT
536507 T
1 T
536508 AGGGTGAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 25 0.69
39 11 0.31
ACGTcount: A:0.13, C:0.09, G:0.35, T:0.44
Consensus pattern (39 bp):
TTTTTAAGTGTGATATTCGAGTCGAGTCGGGTTCGGGTT
Found at i:536710 original size:254 final size:250
Alignment explanation
Indices: 536238--536748 Score: 803
Period size: 254 Copynumber: 2.0 Consensus size: 250
536228 GTGTTATTCA
536238 GGTCGGGTTCGGGTTTAGGGTGAAAAAAACCGGATCGACCCGAAAATATATATAATTCAGGTCGG
1 GGTCGGGTTCGGGTTTAGGGTGAAAAAAACCGGATCGACCCGAAAATATATATAATTCAGGTCGG
*
536303 TTCGGACTAAGTCACTGTTTTTATTAAATAAAAATAATTTTTTATTATTTCGGGTCGGGTCGAGT
66 GTCGGACTAAGTCACTGTTTTTATTAAATAAAAATAATTTTTTATTATTTCGGGTCGGGTC--G-
536368 TGGATTTCTAATTCATATATTCGAGTCGGGTCGGATGAAACTTGATTTTGTTCGAGTCGGGGTTT
128 -GGATTTCTAATTCATATATTCGAGTCGGGTCGGATGAAACTTGATTTTGTTCGAGTCGGGGTTT
* * *
536433 TTAAGTGTGATATTCGAGTCGAGTTGGTTCGGGTTTTTTTAAGTGTGATATTCGGGTCG
192 TTAAGTGTGATATTCGAGTCGAGTCGGGTCGGATTTTTTTAAGTGTGATATTCGGGTCG
*
536492 GGTCGGGTTCGGGTTTAGGGTGAAAAAAAACC-GATCCGACCCGAAAATATATATAATTCGGGTC
1 GGTCGGGTTCGGGTTTAGGGTG-AAAAAAACCGGAT-CGACCCGAAAATATATATAATTCAGGTC
*
536556 GGGTCGGATTAAGTCACTGTTTTTATTAAATAAAAATAA-TTTTTATTATTTCGGGTCGGGTC-G
64 GGGTCGGACTAAGTCACTGTTTTTATTAAATAAAAATAATTTTTTATTATTTCGGGTCGGGTCGG
* * *
536619 GATTTCTAATTCATATATTCGGGTCGGGTCGGATGAAACTTTATTTTGTTCGGGTCGGGTCGGGT
129 GATTTCTAATTCATATATTCGAGTCGGGTCGGATGAAACTTGATTTTGTTCGAGTC--G--GGG-
* *
536684 TTTTTAAGTGTGATATTCGGGTCGAGTCGGGTCGGATTTTTTTAAGTGTGATGTTCGGGTCG
189 TTTTTAAGTGTGATATTCGAGTCGAGTCGGGTCGGATTTTTTTAAGTGTGATATTCGGGTCG
536746 GGT
1 GGT
536749 TTAGGGTGAA
Statistics
Matches: 239, Mismatches: 11, Indels: 14
0.91 0.04 0.05
Matches are distributed among these distances:
249 54 0.23
251 1 0.00
253 3 0.01
254 108 0.45
255 73 0.31
ACGTcount: A:0.23, C:0.12, G:0.28, T:0.37
Consensus pattern (250 bp):
GGTCGGGTTCGGGTTTAGGGTGAAAAAAACCGGATCGACCCGAAAATATATATAATTCAGGTCGG
GTCGGACTAAGTCACTGTTTTTATTAAATAAAAATAATTTTTTATTATTTCGGGTCGGGTCGGGA
TTTCTAATTCATATATTCGAGTCGGGTCGGATGAAACTTGATTTTGTTCGAGTCGGGGTTTTTAA
GTGTGATATTCGAGTCGAGTCGGGTCGGATTTTTTTAAGTGTGATATTCGGGTCG
Found at i:536724 original size:37 final size:38
Alignment explanation
Indices: 536672--536745 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
536662 TTTTGTTCGG
*
536672 GTCGGGTCGG-GTTTTTTAAGTGTGATATTCGGGTCGA
1 GTCGGGTCGGATTTTTTTAAGTGTGATATTCGGGTCGA
*
536709 GTCGGGTCGGATTTTTTTAAGTGTGATGTTCGGGTCG
1 GTCGGGTCGGATTTTTTTAAGTGTGATATTCGGGTCG
536746 GGTTTAGGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 10 0.29
38 24 0.71
ACGTcount: A:0.12, C:0.11, G:0.38, T:0.39
Consensus pattern (38 bp):
GTCGGGTCGGATTTTTTTAAGTGTGATATTCGGGTCGA
Found at i:537316 original size:18 final size:17
Alignment explanation
Indices: 537280--537325 Score: 76
Period size: 18 Copynumber: 2.7 Consensus size: 17
537270 TATGGAATTG
537280 GATTCCAATT-CTTACA
1 GATTCCAATTCCTTACA
537296 GATTCCAATTCCTTCACA
1 GATTCCAATTCCTT-ACA
537314 GATTCCAATTCC
1 GATTCCAATTCC
537326 CTCATAAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 10 0.36
17 3 0.11
18 15 0.54
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.35
Consensus pattern (17 bp):
GATTCCAATTCCTTACA
Found at i:537561 original size:20 final size:20
Alignment explanation
Indices: 537527--537572 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
537517 ATTAAGTATT
*
537527 TAAAAATTATAAAATAATTA
1 TAAAATTTATAAAATAATTA
* * *
537547 TTAAATTTATTAAATTATTA
1 TAAAATTTATAAAATAATTA
537567 TAAAAT
1 TAAAAT
537573 ATCACGATAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAAATTTATAAAATAATTA
Found at i:537688 original size:32 final size:32
Alignment explanation
Indices: 537603--537688 Score: 91
Period size: 32 Copynumber: 2.7 Consensus size: 32
537593 ATTATAAAAT
*
537603 TTTGATAAAATTTAATTATCATTTTAAAACAA
1 TTTGATAAAATTTAATTATTATTTTAAAACAA
** * ** * **
537635 TTCAATAAATTTTAAAAATTATTTTATAATGA
1 TTTGATAAAATTTAATTATTATTTTAAAACAA
537667 TTTGATAAAATTTAATTATTAT
1 TTTGATAAAATTTAATTATTAT
537689 ATATCAATAT
Statistics
Matches: 40, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (32 bp):
TTTGATAAAATTTAATTATTATTTTAAAACAA
Found at i:542616 original size:36 final size:36
Alignment explanation
Indices: 542569--542650 Score: 128
Period size: 36 Copynumber: 2.3 Consensus size: 36
542559 CACCTGGATT
* *
542569 ACCCTTCATCTCCTCGCCATGGATTACTAATTCTTC
1 ACCCTTCATCTCCTCACCATGGATTACCAATTCTTC
*
542605 ACCCTTTATCTCCTCACCATGGATTACCAATTCTTC
1 ACCCTTCATCTCCTCACCATGGATTACCAATTCTTC
*
542641 ACACTTCATC
1 ACCCTTCATC
542651 GGTTACTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.22, C:0.37, G:0.06, T:0.35
Consensus pattern (36 bp):
ACCCTTCATCTCCTCACCATGGATTACCAATTCTTC
Found at i:543054 original size:7 final size:7
Alignment explanation
Indices: 543044--543076 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
543034 TTAGGGCTTA
543044 GGGCCTG
1 GGGCCTG
543051 GGGCCTCG
1 GGGCCT-G
543059 GGGCCTG
1 GGGCCTG
543066 GGGCCTG
1 GGGCCTG
543073 GGGC
1 GGGC
543077 TCGGGGCTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.00, C:0.30, G:0.58, T:0.12
Consensus pattern (7 bp):
GGGCCTG
Found at i:543082 original size:7 final size:7
Alignment explanation
Indices: 543050--543110 Score: 81
Period size: 7 Copynumber: 8.6 Consensus size: 7
543040 CTTAGGGCCT
543050 GGGGCCTC
1 GGGG-CTC
543058 GGGGC-C
1 GGGGCTC
543064 TGGGGC-C
1 -GGGGCTC
543071 TGGGGCTC
1 -GGGGCTC
543079 GGGGCTC
1 GGGGCTC
543086 GGGGCTC
1 GGGGCTC
543093 GGGGCTC
1 GGGGCTC
543100 GGGGCTC
1 GGGGCTC
543107 GGGG
1 GGGG
543111 TTTAGGGTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
6 1 0.02
7 45 0.88
8 5 0.10
ACGTcount: A:0.00, C:0.28, G:0.59, T:0.13
Consensus pattern (7 bp):
GGGGCTC
Found at i:543118 original size:7 final size:7
Alignment explanation
Indices: 543108--549469 Score: 4264
Period size: 7 Copynumber: 929.7 Consensus size: 7
543098 TCGGGGCTCG
543108 GGGTTTA
1 GGGTTTA
543115 GGGTTTA
1 GGGTTTA
543122 GGGTTTA
1 GGGTTTA
543129 GGGTTTA
1 GGGTTTA
543136 GGGTTTA
1 GGGTTTA
543143 GGGTTTA
1 GGGTTTA
543150 GGGTTTA
1 GGGTTTA
543157 GGGTTTA
1 GGGTTTA
543164 GGGTTTA
1 GGGTTTA
543171 GGGTTTA
1 GGGTTTA
543178 GGGTTTA
1 GGGTTTA
543185 GGGTTTA
1 GGGTTTA
543192 GGGTTTA
1 GGGTTTA
543199 -GGTTTA
1 GGGTTTA
543205 GGGTTTA
1 GGGTTTA
543212 GGGTTTA
1 GGGTTTA
543219 GGGTTTA
1 GGGTTTA
543226 GGGTTTA
1 GGGTTTA
543233 GGGTTTA
1 GGGTTTA
543240 GGGTTTTA
1 GGG-TTTA
543248 GGGTTTA
1 GGGTTTA
543255 GGGTTTA
1 GGGTTTA
543262 GGGTTTA
1 GGGTTTA
543269 GGGTTTA
1 GGGTTTA
543276 GGGTTTA
1 GGGTTTA
543283 GGGTTTA
1 GGGTTTA
543290 GGGTTTA
1 GGGTTTA
543297 GGGTTTA
1 GGGTTTA
543304 GGGTTTA
1 GGGTTTA
543311 GGGTTTA
1 GGGTTTA
543318 GGGTTTA
1 GGGTTTA
543325 GGGTTTA
1 GGGTTTA
543332 GGGTTTA
1 GGGTTTA
543339 GGGTTTA
1 GGGTTTA
543346 GGGTTTA
1 GGGTTTA
543353 GGGTTTA
1 GGGTTTA
543360 GGGTTTA
1 GGGTTTA
543367 GGG-TTA
1 GGGTTTA
543373 GGGTTTA
1 GGGTTTA
543380 GGGTTTA
1 GGGTTTA
543387 GGGTTTA
1 GGGTTTA
543394 GGGTTTA
1 GGGTTTA
543401 GGGTTTA
1 GGGTTTA
543408 GGGTTTA
1 GGGTTTA
543415 GGGTTTA
1 GGGTTTA
543422 GGGTTTA
1 GGGTTTA
543429 GGGTTTA
1 GGGTTTA
543436 GGGTTTA
1 GGGTTTA
543443 GGGTTTA
1 GGGTTTA
543450 GGGTTTA
1 GGGTTTA
543457 GGGTTTA
1 GGGTTTA
543464 GGGTTTA
1 GGGTTTA
543471 GGGTTTA
1 GGGTTTA
543478 GGG-TTA
1 GGGTTTA
543484 -GG-TTA
1 GGGTTTA
543489 GGGTTTTA
1 GGG-TTTA
*
543497 GGTTTTTA
1 GG-GTTTA
543505 GGGTTTA
1 GGGTTTA
543512 GGGTTTA
1 GGGTTTA
543519 GGGTTTA
1 GGGTTTA
543526 GGGTTTA
1 GGGTTTA
543533 GGGTTTA
1 GGGTTTA
543540 GGGTTTA
1 GGGTTTA
543547 GGGTTTA
1 GGGTTTA
543554 GGGTTTA
1 GGGTTTA
543561 -GGTTTA
1 GGGTTTA
543567 GGGTTTA
1 GGGTTTA
543574 GGGTTTA
1 GGGTTTA
543581 GGGTTTA
1 GGGTTTA
543588 GGGTTTA
1 GGGTTTA
543595 GGGTTTA
1 GGGTTTA
543602 GGGTTTA
1 GGGTTTA
543609 GGGTTTA
1 GGGTTTA
543616 GGGTTTA
1 GGGTTTA
543623 GGGTTTA
1 GGGTTTA
543630 GGGTTTA
1 GGGTTTA
543637 -GGTTTA
1 GGGTTTA
543643 GGGTTTA
1 GGGTTTA
543650 GGGTTT-
1 GGGTTTA
543656 GGGTTTA
1 GGGTTTA
543663 GGGTTTA
1 GGGTTTA
543670 GGGTTTA
1 GGGTTTA
543677 GGGTTTA
1 GGGTTTA
543684 GGGTTTA
1 GGGTTTA
543691 GGGTTTA
1 GGGTTTA
543698 GGG-TTA
1 GGGTTTA
543704 GGGTTTA
1 GGGTTTA
543711 GGGTTTA
1 GGGTTTA
543718 GGGTTTA
1 GGGTTTA
543725 GGGTTTA
1 GGGTTTA
543732 GGGTTTA
1 GGGTTTA
543739 GGGTTTTTA
1 GGG--TTTA
543748 GGGTTTA
1 GGGTTTA
543755 GGGTTTA
1 GGGTTTA
543762 GGGTTTTA
1 GGG-TTTA
543770 GGGTTTA
1 GGGTTTA
543777 GGGTTTA
1 GGGTTTA
543784 GGGTTTA
1 GGGTTTA
543791 GGGTTTA
1 GGGTTTA
543798 GGGTTTA
1 GGGTTTA
543805 -GGTTTA
1 GGGTTTA
543811 GGGTTTA
1 GGGTTTA
543818 GGGTTTA
1 GGGTTTA
543825 GGGTTTA
1 GGGTTTA
543832 GGGTTTA
1 GGGTTTA
543839 GGG-TT-
1 GGGTTTA
543844 GGGTTTA
1 GGGTTTA
543851 GGGTTTA
1 GGGTTTA
543858 GGGTTTA
1 GGGTTTA
543865 GGGTTTA
1 GGGTTTA
543872 GGGTTTA
1 GGGTTTA
543879 GGGTTTA
1 GGGTTTA
543886 GGG-TTA
1 GGGTTTA
543892 GGGTTTA
1 GGGTTTA
543899 GGGTTTA
1 GGGTTTA
543906 GGGTTTA
1 GGGTTTA
543913 GGGTTTA
1 GGGTTTA
543920 GGGTTTA
1 GGGTTTA
543927 GGGTTTA
1 GGGTTTA
543934 GGGTTTA
1 GGGTTTA
543941 GGGTTTA
1 GGGTTTA
543948 GGGTTTA
1 GGGTTTA
543955 GGGTTTA
1 GGGTTTA
543962 GGGGTTTA
1 -GGGTTTA
543970 GGGTTTA
1 GGGTTTA
543977 GGGTTTA
1 GGGTTTA
543984 GGGTTTA
1 GGGTTTA
543991 GGGTTTA
1 GGGTTTA
543998 GGGTTTA
1 GGGTTTA
544005 GGGTTTA
1 GGGTTTA
544012 GGGTTTA
1 GGGTTTA
544019 GGGTTTA
1 GGGTTTA
544026 GGG-TTA
1 GGGTTTA
544032 GGGTTTA
1 GGGTTTA
544039 -GGTTTA
1 GGGTTTA
544045 GGGTTTA
1 GGGTTTA
544052 GGGTTTA
1 GGGTTTA
544059 GGGTTTA
1 GGGTTTA
544066 GGGTTTA
1 GGGTTTA
544073 GGGTTTA
1 GGGTTTA
544080 GGGTTTA
1 GGGTTTA
544087 GGGTTTA
1 GGGTTTA
544094 GGGTTTA
1 GGGTTTA
544101 GGGTTTA
1 GGGTTTA
544108 GGGTTTA
1 GGGTTTA
544115 GGGTTTA
1 GGGTTTA
544122 GGGTTTA
1 GGGTTTA
544129 GGGGTTTA
1 -GGGTTTA
*
544137 GGGGTTA
1 GGGTTTA
544144 GGGTTTA
1 GGGTTTA
544151 GGGTTTA
1 GGGTTTA
544158 GGGTTTA
1 GGGTTTA
544165 GGGTTTA
1 GGGTTTA
544172 GGGTTTA
1 GGGTTTA
544179 GGGTTTA
1 GGGTTTA
544186 GGGTTTA
1 GGGTTTA
544193 GGGTTTA
1 GGGTTTA
544200 GGGTTTA
1 GGGTTTA
544207 GGGTTTA
1 GGGTTTA
544214 GGGTTTA
1 GGGTTTA
544221 GGGTTTA
1 GGGTTTA
544228 GGGTTTA
1 GGGTTTA
544235 GGGTTTA
1 GGGTTTA
544242 GGGTTTA
1 GGGTTTA
544249 GGGTTTA
1 GGGTTTA
544256 GGGTTTA
1 GGGTTTA
544263 GGGTTTA
1 GGGTTTA
544270 -GGTTTA
1 GGGTTTA
544276 GGGTTTA
1 GGGTTTA
544283 GGGTTTA
1 GGGTTTA
544290 GGGTTTA
1 GGGTTTA
544297 GGGTTTA
1 GGGTTTA
544304 GGG-TTA
1 GGGTTTA
544310 GGGTTTA
1 GGGTTTA
544317 GGGTTTA
1 GGGTTTA
544324 GGGTTTA
1 GGGTTTA
544331 GGGTTTA
1 GGGTTTA
544338 GGGTTTA
1 GGGTTTA
544345 GGGTTTA
1 GGGTTTA
544352 GGG-TTA
1 GGGTTTA
544358 GGGTTTA
1 GGGTTTA
544365 GGGTTTA
1 GGGTTTA
544372 GGGTTTA
1 GGGTTTA
544379 GGGTTTA
1 GGGTTTA
544386 -GGTTTA
1 GGGTTTA
544392 GGGTTTA
1 GGGTTTA
544399 GGGTTTA
1 GGGTTTA
544406 GGGTTTA
1 GGGTTTA
544413 GGGTTTA
1 GGGTTTA
544420 GGG-TTA
1 GGGTTTA
544426 GGGTTTA
1 GGGTTTA
544433 GGGTTTA
1 GGGTTTA
544440 GGGTTTA
1 GGGTTTA
544447 GGGTTTA
1 GGGTTTA
544454 GGGTTTA
1 GGGTTTA
544461 GGGTTTA
1 GGGTTTA
544468 GGGTTTA
1 GGGTTTA
544475 GGGTTTA
1 GGGTTTA
544482 GGGTTTA
1 GGGTTTA
544489 GGGTTTA
1 GGGTTTA
544496 GGGTTTA
1 GGGTTTA
544503 GGGTTTA
1 GGGTTTA
544510 GGGTTTTA
1 GGG-TTTA
544518 GGGTTTA
1 GGGTTTA
544525 GGGTTTA
1 GGGTTTA
544532 GGGTTTA
1 GGGTTTA
544539 GGGTTTA
1 GGGTTTA
544546 GGGTTTA
1 GGGTTTA
544553 GGGTTTA
1 GGGTTTA
544560 GGG-TTA
1 GGGTTTA
544566 GGGTTTTTA
1 GGG--TTTA
544575 GGGTTTA
1 GGGTTTA
544582 GGGTTTA
1 GGGTTTA
544589 GGGTTTA
1 GGGTTTA
544596 GGGTTTA
1 GGGTTTA
544603 GGG-TTA
1 GGGTTTA
544609 GGGTTTA
1 GGGTTTA
544616 GGGTTTA
1 GGGTTTA
544623 GGGTTTTTA
1 GGG--TTTA
544632 GGG-TTA
1 GGGTTTA
544638 GGGTTTA
1 GGGTTTA
544645 GGGTTTA
1 GGGTTTA
544652 GGG-TTA
1 GGGTTTA
544658 GGGTTTA
1 GGGTTTA
544665 GGGTTT-
1 GGGTTTA
544671 GGGTTTA
1 GGGTTTA
544678 GGGTTTA
1 GGGTTTA
544685 GGGTTTA
1 GGGTTTA
544692 GGGTTTA
1 GGGTTTA
*
544699 GGGGGTTA
1 -GGGTTTA
544707 GGGTTTA
1 GGGTTTA
544714 GGG-TTA
1 GGGTTTA
544720 GGGTTTA
1 GGGTTTA
*
544727 GGGGGTTA
1 -GGGTTTA
544735 GGGTTTA
1 GGGTTTA
544742 GGGTTTA
1 GGGTTTA
544749 GGGTTTA
1 GGGTTTA
544756 GGGTTTA
1 GGGTTTA
544763 -GGTTTA
1 GGGTTTA
544769 GGGTTTA
1 GGGTTTA
544776 GGGTTTA
1 GGGTTTA
544783 GGGTTTA
1 GGGTTTA
544790 GGGTTTA
1 GGGTTTA
544797 GGGTTTA
1 GGGTTTA
544804 GGGTTTA
1 GGGTTTA
544811 GGGTTTA
1 GGGTTTA
544818 GGGTTTA
1 GGGTTTA
544825 GGGTTTA
1 GGGTTTA
544832 GGGTTTA
1 GGGTTTA
544839 -GGTTTA
1 GGGTTTA
544845 GGG-TTA
1 GGGTTTA
544851 GGG-TTA
1 GGGTTTA
*
544857 GGGTTTT
1 GGGTTTA
544864 GGGTTTA
1 GGGTTTA
544871 -GGTTTA
1 GGGTTTA
544877 GGGTTTA
1 GGGTTTA
544884 GGGTTTA
1 GGGTTTA
544891 GGGGTTTA
1 -GGGTTTA
*
544899 GGGTTTG
1 GGGTTTA
544906 GGGTTTA
1 GGGTTTA
544913 GGGTTTA
1 GGGTTTA
*
544920 GGGTTTG
1 GGGTTTA
544927 GGGTTTA
1 GGGTTTA
544934 GGGTTTA
1 GGGTTTA
544941 GGGGTTTA
1 -GGGTTTA
544949 GGGTTTA
1 GGGTTTA
*
544956 GGGGTTTG
1 -GGGTTTA
544964 GGGTTTA
1 GGGTTTA
544971 GGGTTTA
1 GGGTTTA
*
544978 GGGTTTTT
1 GGG-TTTA
* *
544986 GGGGTTG
1 GGGTTTA
*
544993 GGGTTTG
1 GGGTTTA
545000 GGGTTT-
1 GGGTTTA
545006 GGGTTT-
1 GGGTTTA
* *
545012 GGGGTTG
1 GGGTTTA
*
545019 GGGTTTG
1 GGGTTTA
*
545026 GGGTTTG
1 GGGTTTA
*
545033 GGGTTTG
1 GGGTTTA
545040 GGGTTT-
1 GGGTTTA
545046 GGGTTT-
1 GGGTTTA
* *
545052 GGGGTTG
1 GGGTTTA
*
545059 GGGTTTG
1 GGGTTTA
545066 GGGTTT-
1 GGGTTTA
*
545072 GGGTTTG
1 GGGTTTA
*
545079 GGGTTTG
1 GGGTTTA
*
545086 GGGTTTG
1 GGGTTTA
*
545093 GGGTTTG
1 GGGTTTA
*
545100 GGGTTTG
1 GGGTTTA
*
545107 GGGTTTG
1 GGGTTTA
*
545114 GGGTTTG
1 GGGTTTA
*
545121 GGGTTTG
1 GGGTTTA
*
545128 GGGTTTG
1 GGGTTTA
*
545135 GGGTTTG
1 GGGTTTA
*
545142 GGGTTTG
1 GGGTTTA
*
545149 GGGTTTG
1 GGGTTTA
*
545156 GGGTTTG
1 GGGTTTA
*
545163 GGGTTTG
1 GGGTTTA
545170 GGGTTT-
1 GGGTTTA
*
545176 GGGTTTG
1 GGGTTTA
*
545183 GGGTTTG
1 GGGTTTA
*
545190 GGGTTTG
1 GGGTTTA
545197 GGGTTT-
1 GGGTTTA
*
545203 GGGTTTG
1 GGGTTTA
*
545210 GGGTTTG
1 GGGTTTA
*
545217 GGGTTTG
1 GGGTTTA
*
545224 GGGTTTG
1 GGGTTTA
*
545231 GGGTTTG
1 GGGTTTA
*
545238 GGGTTTG
1 GGGTTTA
*
545245 GGGTTTG
1 GGGTTTA
*
545252 GGGTTTG
1 GGGTTTA
*
545259 GGGTTTG
1 GGGTTTA
*
545266 GGGTTTG
1 GGGTTTA
*
545273 GGGTTTG
1 GGGTTTA
545280 GGGTTT-
1 GGGTTTA
* *
545286 GGGGTTG
1 GGGTTTA
*
545293 GGGTTTG
1 GGGTTTA
*
545300 GGGTTTG
1 GGGTTTA
*
545307 GGGTTTG
1 GGGTTTA
*
545314 GGGTTTG
1 GGGTTTA
*
545321 GGGTTTG
1 GGGTTTA
*
545328 GGGTTTG
1 GGGTTTA
*
545335 GGGTTTG
1 GGGTTTA
*
545342 GGGTTTG
1 GGGTTTA
*
545349 GGGTTTG
1 GGGTTTA
*
545356 GGGTTTG
1 GGGTTTA
*
545363 GGGTTTG
1 GGGTTTA
*
545370 GGGTTTG
1 GGGTTTA
545377 GGGTTT-
1 GGGTTTA
*
545383 GGGGTT-
1 GGGTTTA
* *
545389 GGGGTTG
1 GGGTTTA
545396 GGGTTT-
1 GGGTTTA
* *
545402 GGGGTTG
1 GGGTTTA
*
545409 GGGTTTG
1 GGGTTTA
*
545416 GGGTTTG
1 GGGTTTA
*
545423 GGGTTTG
1 GGGTTTA
545430 GGGTTT-
1 GGGTTTA
* *
545436 GGGGTTG
1 GGGTTTA
*
545443 GGGTTTG
1 GGGTTTA
*
545450 GGGTTTG
1 GGGTTTA
*
545457 GGGTTTG
1 GGGTTTA
*
545464 GGGTTTG
1 GGGTTTA
*
545471 GGGTTTG
1 GGGTTTA
*
545478 GGGTTTG
1 GGGTTTA
*
545485 GGGTTTG
1 GGGTTTA
*
545492 GGGTTTG
1 GGGTTTA
*
545499 GGGTTTG
1 GGGTTTA
*
545506 GGGTTTT
1 GGGTTTA
*
545513 GGGTTTG
1 GGGTTTA
*
545520 GGGTTTG
1 GGGTTTA
545527 GGGTTT-
1 GGGTTTA
*
545533 GGGTTTG
1 GGGTTTA
545540 GGGTTT-
1 GGGTTTA
*
545546 GGGTTTG
1 GGGTTTA
545553 GGGTTT-
1 GGGTTTA
*
545559 GGGTTTG
1 GGGTTTA
*
545566 GGGTTTGGG
1 GGGTTT--A
* *
545575 GGGGTTG
1 GGGTTTA
*
545582 GGGTTTG
1 GGGTTTA
*
545589 GGGTTTG
1 GGGTTTA
*
545596 GGGTTTG
1 GGGTTTA
*
545603 GGGTTTG
1 GGGTTTA
**
545610 GGGTGGGTGG
1 GGGT---TTA
*
545620 GGGTTTG
1 GGGTTTA
*
545627 GGGTTTG
1 GGGTTTA
*
545634 GGGTTTG
1 GGGTTTA
*
545641 GGGTTTTG
1 GGG-TTTA
*
545649 GGGTTTG
1 GGGTTTA
*
545656 GGGTTTG
1 GGGTTTA
**
545663 GGGTTGG
1 GGGTTTA
*
545670 GGGTTTTG
1 GGG-TTTA
*
545678 GGGTTTG
1 GGGTTTA
545685 GGGTTT-
1 GGGTTTA
*
545691 GGGTTTG
1 GGGTTTA
545698 GGGTTT-
1 GGGTTTA
*
545704 GGGTTTGGG
1 GGGTTT--A
* *
545713 GGGGTTG
1 GGGTTTA
*
545720 GGGTTTG
1 GGGTTTA
*
545727 GGGTTTG
1 GGGTTTA
*
545734 GGGTTTG
1 GGGTTTA
*
545741 GGGTTTG
1 GGGTTTA
*
545748 GGGTTTG
1 GGGTTTA
**
545755 GGGTTGGG
1 GGGTT-TA
545763 GGGTTT-
1 GGGTTTA
* *
545769 GGGGTTG
1 GGGTTTA
*
545776 GGGTTTTG
1 GGG-TTTA
*
545784 GGGTTTG
1 GGGTTTA
*
545791 GGGTTTG
1 GGGTTTA
545798 GGGTTT-
1 GGGTTTA
* *
545804 GGGGTTG
1 GGGTTTA
*
545811 GGGTTTG
1 GGGTTTA
545818 GGGTTT-
1 GGGTTTA
545824 GGGTTT-
1 GGGTTTA
*
545830 GGGTTTG
1 GGGTTTA
*
545837 GGGTTTG
1 GGGTTTA
*
545844 GGGTTTG
1 GGGTTTA
545851 GGGTTT-
1 GGGTTTA
* *
545857 GGGGTTG
1 GGGTTTA
*
545864 GGGTTTG
1 GGGTTTA
*
545871 GGGTTTTG
1 GGG-TTTA
*
545879 GGGTTTG
1 GGGTTTA
545886 GGGTTT-
1 GGGTTTA
* *
545892 GGGGTTG
1 GGGTTTA
*
545899 GGGTTTG
1 GGGTTTA
545906 GGGTTT-
1 GGGTTTA
*
545912 GGG--TG
1 GGGTTTA
*
545917 GGGTTTG
1 GGGTTTA
*
545924 GGGTTTG
1 GGGTTTA
*
545931 GGGTTTG
1 GGGTTTA
*
545938 GGGTTTG
1 GGGTTTA
*
545945 GGGTTTG
1 GGGTTTA
*
545952 GGGTTTG
1 GGGTTTA
*
545959 GGGTTTG
1 GGGTTTA
*
545966 GGGTTTG
1 GGGTTTA
545973 GGGTTT-
1 GGGTTTA
*
545979 GGGTTTG
1 GGGTTTA
545986 GGGTTT-
1 GGGTTTA
*
545992 GGGTTTG
1 GGGTTTA
*
545999 GGGTTTTG
1 GGG-TTTA
*
546007 GGGTTTG
1 GGGTTTA
*
546014 GGGTTTTG
1 GGG-TTTA
546022 GGGTTT-
1 GGGTTTA
* *
546028 GGGGTTG
1 GGGTTTA
*
546035 GGGTTTG
1 GGGTTTA
546042 GGGTTT-
1 GGGTTTA
* *
546048 GGGGTTG
1 GGGTTTA
*
546055 GGGTTTG
1 GGGTTTA
*
546062 GGGTTTG
1 GGGTTTA
*
546069 GGGTTTG
1 GGGTTTA
*
546076 GGGTTTG
1 GGGTTTA
*
546083 GGGTTTG
1 GGGTTTA
*
546090 GGGTTTG
1 GGGTTTA
*
546097 GGGTTTG
1 GGGTTTA
546104 GGGTTT-
1 GGGTTTA
***
546110 GGG-GGG
1 GGGTTTA
546116 GGGTTT-
1 GGGTTTA
*
546122 GGGTTTG
1 GGGTTTA
*
546129 GGGTTTG
1 GGGTTTA
*
546136 GGGTTTG
1 GGGTTTA
*
546143 GGGTTTG
1 GGGTTTA
*
546150 GGGTTTG
1 GGGTTTA
*
546157 GGGTTTG
1 GGGTTTA
*
546164 GGGTTTG
1 GGGTTTA
*
546171 GGGTTTG
1 GGGTTTA
*
546178 GGGTTTG
1 GGGTTTA
*
546185 GGGTTTG
1 GGGTTTA
*
546192 GGGTTTG
1 GGGTTTA
*
546199 GGGTTTG
1 GGGTTTA
*
546206 GGGTTTG
1 GGGTTTA
546213 GGGTTT-
1 GGGTTTA
* *
546219 GGGGTTG
1 GGGTTTA
*
546226 GGGTTTG
1 GGGTTTA
*
546233 GGGTTTG
1 GGGTTTA
546240 GGGTTT-
1 GGGTTTA
*
546246 GGGGTT-
1 GGGTTTA
* *
546252 GGGGTTG
1 GGGTTTA
*
546259 GGGTTTG
1 GGGTTTA
*
546266 GGGTTTG
1 GGGTTTA
*
546273 GGGTTTG
1 GGGTTTA
*
546280 GGGTTTG
1 GGGTTTA
***
546287 GGGTGGGGG
1 GGGT--TTA
* *
546296 GGGTGGTC
1 GGGT-TTA
* *
546304 GGG-GTG
1 GGGTTTA
*
546310 GGGTTTG
1 GGGTTTA
546317 GGGTTT-
1 GGGTTTA
***
546323 GGG-GGG
1 GGGTTTA
546329 GGGTTT-
1 GGGTTTA
*
546335 GGGGTT-
1 GGGTTTA
* *
546341 GGGGTTG
1 GGGTTTA
546348 GGGTTT-
1 GGGTTTA
* *
546354 GGG-GTC
1 GGGTTTA
* *
546360 GGG-GTC
1 GGGTTTA
* **
546366 GGGGTCG
1 GGGTTTA
* **
546373 GGGGTCG
1 GGGTTTA
*
546380 GGGTTTC
1 GGGTTTA
*
546387 GGGGTT-
1 GGGTTTA
*
546393 GGGGTT-
1 GGGTTTA
*
546399 GGGGTT-
1 GGGTTTA
* *
546405 GGG-GTC
1 GGGTTTA
* *
546411 GGGGTTC
1 GGGTTTA
* *
546418 GGGGTTC
1 GGGTTTA
*
546425 GGG-TTC
1 GGGTTTA
* *
546431 GGGGTTC
1 GGGTTTA
**
546438 GGGTTCG
1 GGGTTTA
**
546445 GGGTTCG
1 GGGTTTA
*
546452 GGGTTTG
1 GGGTTTA
*
546459 GGGTTTC
1 GGGTTTA
546466 GGG-TT-
1 GGGTTTA
*
546471 GGGTTTC
1 GGGTTTA
* *
546478 GGGGTTC
1 GGGTTTA
* *
546485 GGGGTTC
1 GGGTTTA
* *
546492 GGGGTTC
1 GGGTTTA
* *
546499 GGGGTTC
1 GGGTTTA
* *
546506 GGGGTTC
1 GGGTTTA
**
546513 GGGTTCG
1 GGGTTTA
**
546520 GGGTTCG
1 GGGTTTA
**
546527 GGGTTCG
1 GGGTTTA
* *
546534 GGGGTTC
1 GGGTTTA
* *
546541 GGGGTTC
1 GGGTTTA
* *
546548 GGGGTTC
1 GGGTTTA
* *
546555 GGGGTTC
1 GGGTTTA
* *
546562 GGGGTTC
1 GGGTTTA
* *
546569 GGGGTTC
1 GGGTTTA
**
546576 GGGTTCG
1 GGGTTTA
**
546583 GGGTTCG
1 GGGTTTA
**
546590 GGGTTCG
1 GGGTTTA
**
546597 GGGTTCG
1 GGGTTTA
**
546604 GGGTTCG
1 GGGTTTA
**
546611 GGGTTCG
1 GGGTTTA
**
546618 GGGTTCG
1 GGGTTTA
*
546625 GGGGTT-
1 GGGTTTA
**
546631 GGGTTCG
1 GGGTTTA
**
546638 GGGTTCGG
1 GGGTT-TA
**
546646 GGGTTCG
1 GGGTTTA
**
546653 GGGTTCG
1 GGGTTTA
**
546660 GGGTTCG
1 GGGTTTA
**
546667 GGGTTCG
1 GGGTTTA
**
546674 GGGTTCG
1 GGGTTTA
**
546681 GGGTTCG
1 GGGTTTA
**
546688 GGGTTCGG
1 GGGTT-TA
* *
546696 GGGGTTG
1 GGGTTTA
* *
546703 GGGGTTC
1 GGGTTTA
* *
546710 GGGGTTC
1 GGGTTTA
* *
546717 GGGGTTC
1 GGGTTTA
* *
546724 GGGGTTC
1 GGGTTTA
* *
546731 GGGGTTC
1 GGGTTTA
* *
546738 GGGGTTC
1 GGGTTTA
*
546745 GGG---G
1 GGGTTTA
* *
546749 GGGGTTC
1 GGGTTTA
*
546756 GGGGTT-
1 GGGTTTA
* *
546762 CGG-TTC
1 GGGTTTA
* *
546768 GGGGTTC
1 GGGTTTA
* *
546775 GGGGTTC
1 GGGTTTA
*
546782 GGG-TTC
1 GGGTTTA
*
546788 GGG-TTC
1 GGGTTTA
**
546794 GGGTTCGGG
1 GGGTT--TA
* *
546803 GGGGTTC
1 GGGTTTA
546810 GGG-TT-
1 GGGTTTA
* *
546815 CGGTTTC
1 GGGTTTA
* *
546822 GGGGTTC
1 GGGTTTA
*
546829 GGG-TTC
1 GGGTTTA
*
546835 GGG-TTC
1 GGGTTTA
*
546841 GGG-TTC
1 GGGTTTA
*
546847 GGGTTTC
1 GGGTTTA
*
546854 GGG-TTC
1 GGGTTTA
*
546860 GGG-TTC
1 GGGTTTA
*
546866 GGG-TTC
1 GGGTTTA
*
546872 GGG-TTC
1 GGGTTTA
546878 GGG-TT-
1 GGGTTTA
* *
546883 CGG-TTC
1 GGGTTTA
* *
546889 GGGGTTC
1 GGGTTTA
*
546896 GGGTTTC
1 GGGTTTA
*
546903 GGG-TTC
1 GGGTTTA
*
546909 GGG-TTC
1 GGGTTTA
*
546915 GGG-TTC
1 GGGTTTA
**
546921 GGGTTCG
1 GGGTTTA
*
546928 GGGTTCA
1 GGGTTTA
*
546935 GGG-TTC
1 GGGTTTA
*
546941 GGG-TTC
1 GGGTTTA
*
546947 GGG-TTC
1 GGGTTTA
546953 GGG-TT-
1 GGGTTTA
* *
546958 CGG-TTC
1 GGGTTTA
* *
546964 GGGGTTC
1 GGGTTTA
* *
546971 GGGGTTC
1 GGGTTTA
* *
546978 GGGGTTC
1 GGGTTTA
* *
546985 GGG-GTC
1 GGGTTTA
*
546991 GGG-TTC
1 GGGTTTA
*
546997 GGG-TTC
1 GGGTTTA
*
547003 GGG-TTC
1 GGGTTTA
* *
547009 GGGGTTC
1 GGGTTTA
*
547016 GGG-TTC
1 GGGTTTA
* *
547022 GGGGTTC
1 GGGTTTA
*
547029 GGG-TTC
1 GGGTTTA
*
547035 GGG-TTC
1 GGGTTTA
* *
547041 GGGGTTC
1 GGGTTTA
* *
547048 GGGGTTC
1 GGGTTTA
*
547055 GGG-TTC
1 GGGTTTA
*
547061 GGG-TTC
1 GGGTTTA
*
547067 GGG-TTC
1 GGGTTTA
* *
547073 GGGGTTC
1 GGGTTTA
*
547080 GGG-TTC
1 GGGTTTA
*
547086 GGG-TTC
1 GGGTTTA
*
547092 GGG-TTC
1 GGGTTTA
547098 GGG--T-
1 GGGTTTA
*
547102 GGGTTCA
1 GGGTTTA
547109 -GG-TTA
1 GGGTTTA
*
547114 GGG-TTC
1 GGGTTTA
*
547120 GGGTTCA
1 GGGTTTA
*
547127 GGGTTCA
1 GGGTTTA
*
547134 -GGTTCA
1 GGGTTTA
*
547140 GGGTTCA
1 GGGTTTA
*
547147 GGGTTCA
1 GGGTTTA
*
547154 -GGTTCA
1 GGGTTTA
*
547160 GGGTTCA
1 GGGTTTA
*
547167 GGGTTCA
1 GGGTTTA
*
547174 GGGTTCA
1 GGGTTTA
*
547181 GGGTTCA
1 GGGTTTA
*
547188 GGG--TC
1 GGGTTTA
*
547193 GGGTTCA
1 GGGTTTA
*
547200 GGGTTCA
1 GGGTTTA
*
547207 GGGTTCA
1 GGGTTTA
*
547214 GGG-TTC
1 GGGTTTA
*
547220 GGG-TTC
1 GGGTTTA
*
547226 GGGTTTC
1 GGGTTTA
*
547233 GGGTTCA
1 GGGTTTA
*
547240 GGGTTCA
1 GGGTTTA
*
547247 GGG-TCA
1 GGGTTTA
*
547253 GGGTTCA
1 GGGTTTA
*
547260 GGGTTCA
1 GGGTTTA
*
547267 GGGTTCA
1 GGGTTTA
* *
547274 GGGGTTC
1 GGGTTTA
*
547281 GGGTTCA
1 GGGTTTA
*
547288 GGGTTCA
1 GGGTTTA
*
547295 GGGTTCA
1 GGGTTTA
*
547302 GGGTTCA
1 GGGTTTA
547309 GGGTTCATCA
1 GGGTT--T-A
*
547319 GGGTTCA
1 GGGTTTA
*
547326 GGGTTCA
1 GGGTTTA
*
547333 -GGTTCA
1 GGGTTTA
*
547339 GGGTTCA
1 GGGTTTA
*
547346 GGG-TTC
1 GGGTTTA
*
547352 GGGTTCA
1 GGGTTTA
*
547359 GGG-TTC
1 GGGTTTA
*
547365 GGGTTCA
1 GGGTTTA
*
547372 GGGTTCA
1 GGGTTTA
*
547379 GGGTTCA
1 GGGTTTA
*
547386 GGGTTCA
1 GGGTTTA
*
547393 GGGTTCA
1 GGGTTTA
*
547400 GGGTTCA
1 GGGTTTA
*
547407 -GGTTCA
1 GGGTTTA
*
547413 GGGTTCA
1 GGGTTTA
*
547420 GGGTTCA
1 GGGTTTA
*
547427 GGGTTCA
1 GGGTTTA
*
547434 GGGTTCA
1 GGGTTTA
*
547441 GGGTTCA
1 GGGTTTA
547448 -GGTTTCA
1 GGGTTT-A
*
547455 GGGTTCA
1 GGGTTTA
*
547462 GGG-TCA
1 GGGTTTA
*
547468 GGG-TCA
1 GGGTTTA
*
547474 -GGTTCA
1 GGGTTTA
*
547480 GGGTTCA
1 GGGTTTA
*
547487 GGGTTCA
1 GGGTTTA
*
547494 GGGGTTA
1 GGGTTTA
*
547501 GGG-TCA
1 GGGTTTA
*
547507 GGGTTCA
1 GGGTTTA
547514 GGGTTTTTCA
1 GGG--TTT-A
*
547524 GGGTTCA
1 GGGTTTA
*
547531 GGGTTCA
1 GGGTTTA
*
547538 GGGTTCA
1 GGGTTTA
*
547545 GGGTTCA
1 GGGTTTA
*
547552 GGGTTCA
1 GGGTTTA
*
547559 GGGTTCA
1 GGGTTTA
*
547566 GGGTTCA
1 GGGTTTA
*
547573 GGGTTCA
1 GGGTTTA
*
547580 GGGTTCA
1 GGGTTTA
*
547587 GGGTTCA
1 GGGTTTA
*
547594 GGGTTCA
1 GGGTTTA
*
547601 GGGTTCA
1 GGGTTTA
*
547608 GGG-TTC
1 GGGTTTA
*
547614 GGGTTCA
1 GGGTTTA
*
547621 GGGTTCA
1 GGGTTTA
*
547628 GGGTTCA
1 GGGTTTA
*
547635 GGGTTCA
1 GGGTTTA
*
547642 GGGTTCA
1 GGGTTTA
*
547649 GGGTTCA
1 GGGTTTA
*
547656 GGGTTCA
1 GGGTTTA
*
547663 GGGTTCA
1 GGGTTTA
*
547670 GGGTTCA
1 GGGTTTA
*
547677 -GGTTCA
1 GGGTTTA
547683 GGGTTTCA
1 GGGTTT-A
*
547691 GGGTTCA
1 GGGTTTA
*
547698 GGGTTCA
1 GGGTTTA
*
547705 GGGTTCA
1 GGGTTTA
*
547712 GGGTTCA
1 GGGTTTA
*
547719 -GGTTCA
1 GGGTTTA
*
547725 GGGTTCA
1 GGGTTTA
*
547732 -GGTTCA
1 GGGTTTA
*
547738 GGGTTCA
1 GGGTTTA
*
547745 GGGTTCA
1 GGGTTTA
*
547752 -GGTTCA
1 GGGTTTA
*
547758 GGGTTCA
1 GGGTTTA
*
547765 GGGTTCA
1 GGGTTTA
*
547772 GGGTTCA
1 GGGTTTA
*
547779 GGGTTCA
1 GGGTTTA
*
547786 GGG-TTC
1 GGGTTTA
*
547792 GGGTTCA
1 GGGTTTA
*
547799 GGGTTCA
1 GGGTTTA
*
547806 GGGTTCA
1 GGGTTTA
*
547813 GGGTTCA
1 GGGTTTA
547820 GGGTTTCA
1 GGGTTT-A
*
547828 GGGTTCA
1 GGGTTTA
*
547835 GGGTTCA
1 GGGTTTA
*
547842 GGGTTCA
1 GGGTTTA
*
547849 GGGTTCA
1 GGGTTTA
*
547856 GGGTTCA
1 GGGTTTA
*
547863 GGGTTCA
1 GGGTTTA
*
547870 GGGTTCA
1 GGGTTTA
*
547877 GGGTTCA
1 GGGTTTA
*
547884 GGGGTTCA
1 -GGGTTTA
*
547892 GGGTTCA
1 GGGTTTA
*
547899 GGGTTCA
1 GGGTTTA
*
547906 GGGTTCA
1 GGGTTTA
*
547913 GGGTTCA
1 GGGTTTA
*
547920 GGGTTCA
1 GGGTTTA
*
547927 GGGTTCA
1 GGGTTTA
*
547934 GGGTTCA
1 GGGTTTA
*
547941 GGGTTCA
1 GGGTTTA
*
547948 GGGTTCA
1 GGGTTTA
*
547955 GGGTTCA
1 GGGTTTA
*
547962 GGGTTCA
1 GGGTTTA
547969 GGGTTTCA
1 GGGTTT-A
*
547977 -GGTTCA
1 GGGTTTA
*
547983 GGGTTCA
1 GGGTTTA
*
547990 GGGTTCA
1 GGGTTTA
*
547997 GGGTTCA
1 GGGTTTA
*
548004 GGGTTCA
1 GGGTTTA
*
548011 GGGTTCA
1 GGGTTTA
*
548018 GGGTTCA
1 GGGTTTA
548025 GGGTTTTCA
1 GGG-TTT-A
*
548034 GGGTTCA
1 GGGTTTA
*
548041 -GGTTCA
1 GGGTTTA
*
548047 GGGTTCA
1 GGGTTTA
*
548054 GGGTTCA
1 GGGTTTA
*
548061 GGGTTCA
1 GGGTTTA
*
548068 -GGTTCA
1 GGGTTTA
*
548074 GGGTTCA
1 GGGTTTA
*
548081 GGGTTCA
1 GGGTTTA
*
548088 -GGTTCA
1 GGGTTTA
*
548094 GGGTTCA
1 GGGTTTA
*
548101 GGGTTCA
1 GGGTTTA
*
548108 GGGTTCA
1 GGGTTTA
*
548115 -GGTTCA
1 GGGTTTA
*
548121 -GGTTCA
1 GGGTTTA
*
548127 GGGTTCA
1 GGGTTTA
*
548134 GGGTTCA
1 GGGTTTA
*
548141 GGGTTCA
1 GGGTTTA
*
548148 GGGTTCA
1 GGGTTTA
*
548155 GGGTTCA
1 GGGTTTA
*
548162 GGGTTCA
1 GGGTTTA
*
548169 GGGTTCA
1 GGGTTTA
*
548176 GGGTTCA
1 GGGTTTA
*
548183 GGGTTCA
1 GGGTTTA
*
548190 -GGTTCA
1 GGGTTTA
*
548196 GGGTTCA
1 GGGTTTA
*
548203 GGGTTCA
1 GGGTTTA
*
548210 GGGTTCA
1 GGGTTTA
*
548217 GGGTTCA
1 GGGTTTA
*
548224 GGGTTCA
1 GGGTTTA
*
548231 GGGTTCA
1 GGGTTTA
*
548238 GGGTTCA
1 GGGTTTA
*
548245 GGGTTCA
1 GGGTTTA
*
548252 -GGTTCA
1 GGGTTTA
*
548258 GGGTTCA
1 GGGTTTA
*
548265 GGGTTCA
1 GGGTTTA
*
548272 GGGTTCA
1 GGGTTTA
*
548279 GGGTTCA
1 GGGTTTA
*
548286 GGGTTCA
1 GGGTTTA
*
548293 GGGTTCA
1 GGGTTTA
*
548300 GGGTTCA
1 GGGTTTA
*
548307 GGGTTCA
1 GGGTTTA
*
548314 -GGTTCA
1 GGGTTTA
*
548320 GGGTTCA
1 GGGTTTA
*
548327 GGGTTCA
1 GGGTTTA
*
548334 -GGTTCA
1 GGGTTTA
*
548340 GGGTTCA
1 GGGTTTA
*
548347 GGGTTCA
1 GGGTTTA
* *
548354 GGGGTCA
1 GGGTTTA
*
548361 GGGTTCA
1 GGGTTTA
*
548368 -GGTTCA
1 GGGTTTA
*
548374 GGG-TCA
1 GGGTTTA
*
548380 GGGTTCA
1 GGGTTTA
*
548387 GGGTTCA
1 GGGTTTA
*
548394 GGGTTCA
1 GGGTTTA
*
548401 GGGTTCA
1 GGGTTTA
*
548408 GGGTTCA
1 GGGTTTA
*
548415 GGGTTCA
1 GGGTTTA
548422 GGG-TT-
1 GGGTTTA
* *
548427 CGGTTCA
1 GGGTTTA
*
548434 GGGTTCA
1 GGGTTTA
*
548441 -GG-TTC
1 GGGTTTA
548446 GGGTTTCA
1 GGGTTT-A
*
548454 GGG-TCA
1 GGGTTTA
*
548460 GGGGTTCA
1 -GGGTTTA
*
548468 GGGTTCA
1 GGGTTTA
*
548475 GGGTTCA
1 GGGTTTA
*
548482 GGGTTCA
1 GGGTTTA
*
548489 -GGTTCA
1 GGGTTTA
*
548495 GGGTTCA
1 GGGTTTA
*
548502 GGGTTCA
1 GGGTTTA
*
548509 GGGTTCA
1 GGGTTTA
*
548516 GGGTTCA
1 GGGTTTA
*
548523 GGGTTCA
1 GGGTTTA
*
548530 GGGTTCA
1 GGGTTTA
*
548537 GGGTTCA
1 GGGTTTA
*
548544 GGGTTCA
1 GGGTTTA
*
548551 GGGTTCA
1 GGGTTTA
*
548558 -GGTTCA
1 GGGTTTA
*
548564 GGGTTCA
1 GGGTTTA
548571 -GG-TT-
1 GGGTTTA
* *
548575 CGGTTCA
1 GGGTTTA
*
548582 GGGTTCA
1 GGGTTTA
*
548589 GGGTTCA
1 GGGTTTA
*
548596 GGTTTTCA
1 GGGTTT-A
*
548604 GGGTTCA
1 GGGTTTA
*
548611 GGGTTCA
1 GGGTTTA
*
548618 -GGTTCA
1 GGGTTTA
*
548624 GGGTTCA
1 GGGTTTA
*
548631 -GGTTCA
1 GGGTTTA
*
548637 GGG-TTC
1 GGGTTTA
*
548643 GGGTTCA
1 GGGTTTA
*
548650 -GGTTCA
1 GGGTTTA
*
548656 GGGTTCA
1 GGGTTTA
*
548663 -GGTTCA
1 GGGTTTA
*
548669 GGGTTCA
1 GGGTTTA
*
548676 GGGTTCA
1 GGGTTTA
*
548683 GGGTTCA
1 GGGTTTA
*
548690 GGGTTCA
1 GGGTTTA
*
548697 GGGTTCA
1 GGGTTTA
*
548704 GGGTTCA
1 GGGTTTA
*
548711 -GGTTCA
1 GGGTTTA
*
548717 -GGTTCA
1 GGGTTTA
*
548723 GGGTTCA
1 GGGTTTA
*
548730 GGGTTCA
1 GGGTTTA
*
548737 -GGTTCA
1 GGGTTTA
*
548743 GGGTTCA
1 GGGTTTA
*
548750 GGGTTCA
1 GGGTTTA
*
548757 -GGTTCA
1 GGGTTTA
*
548763 --GTTCA
1 GGGTTTA
*
548768 GGGTTCA
1 GGGTTTA
*
548775 GGGTTCA
1 GGGTTTA
*
548782 GGGTTCA
1 GGGTTTA
*
548789 GGGTTCA
1 GGGTTTA
*
548796 GGGTTCA
1 GGGTTTA
*
548803 GGG-TTC
1 GGGTTTA
*
548809 GGGTTCA
1 GGGTTTA
*
548816 -GGTTCA
1 GGGTTTA
*
548822 GGGTTCA
1 GGGTTTA
*
548829 -GGTTCA
1 GGGTTTA
*
548835 GGGTTCA
1 GGGTTTA
*
548842 -GGTTCA
1 GGGTTTA
*
548848 GGGTTCA
1 GGGTTTA
*
548855 GGGTTCA
1 GGGTTTA
*
548862 GGGTTCA
1 GGGTTTA
*
548869 GGGTTCA
1 GGGTTTA
*
548876 -GGTTCA
1 GGGTTTA
*
548882 GGGTTCA
1 GGGTTTA
*
548889 GGGTTCA
1 GGGTTTA
*
548896 GGGTTCA
1 GGGTTTA
*
548903 GGGTTCA
1 GGGTTTA
*
548910 GGGTTCA
1 GGGTTTA
*
548917 -GGTTCA
1 GGGTTTA
*
548923 GGGTTCA
1 GGGTTTA
*
548930 -GGTTCA
1 GGGTTTA
*
548936 -GGTTCA
1 GGGTTTA
*
548942 GGGTTCA
1 GGGTTTA
*
548949 GGGTTCA
1 GGGTTTA
*
548956 GGG-TTC
1 GGGTTTA
*
548962 GGGTTCA
1 GGGTTTA
*
548969 GGGTTCA
1 GGGTTTA
*
548976 -GGTTCA
1 GGGTTTA
*
548982 GGGTTCA
1 GGGTTTA
*
548989 GGGTTCA
1 GGGTTTA
*
548996 GGGTTCA
1 GGGTTTA
*
549003 GGGTTCA
1 GGGTTTA
*
549010 GGGTTCA
1 GGGTTTA
*
549017 GGGTTCA
1 GGGTTTA
*
549024 GGGTTCA
1 GGGTTTA
*
549031 GGGTTCA
1 GGGTTTA
*
549038 GGGTTCA
1 GGGTTTA
*
549045 -GGTTCA
1 GGGTTTA
*
549051 GGGTTCA
1 GGGTTTA
*
549058 GGGTTCA
1 GGGTTTA
*
549065 GGGTTCA
1 GGGTTTA
549072 GGGTTTCA
1 GGGTTT-A
*
549080 GGGTTCA
1 GGGTTTA
*
549087 GGGTTCA
1 GGGTTTA
*
549094 GGGTTCA
1 GGGTTTA
*
549101 GGGTTCA
1 GGGTTTA
*
549108 GGGTTCA
1 GGGTTTA
549115 GGGTTTTCA
1 GGG-TTT-A
*
549124 GGGTTCA
1 GGGTTTA
*
549131 -GG-TCA
1 GGGTTTA
*
549136 GGGTTCA
1 GGGTTTA
*
549143 GGGTTCA
1 GGGTTTA
*
549150 GGGTTCA
1 GGGTTTA
*
549157 GGGTTCA
1 GGGTTTA
*
549164 GGGTTCA
1 GGGTTTA
*
549171 GGGTTCA
1 GGGTTTA
*
549178 GGGTTCA
1 GGGTTTA
*
549185 GGGTTCA
1 GGGTTTA
*
549192 GGGTTCA
1 GGGTTTA
*
549199 GGGTTCA
1 GGGTTTA
*
549206 GGGTTCA
1 GGGTTTA
*
549213 GGGTTCA
1 GGGTTTA
*
549220 -GGTTCA
1 GGGTTTA
*
549226 GGGTTCA
1 GGGTTTA
*
549233 -GGTTCA
1 GGGTTTA
*
549239 GGGTTCA
1 GGGTTTA
*
549246 -GGTTCA
1 GGGTTTA
*
549252 GGGTTCA
1 GGGTTTA
*
549259 GGGTTCA
1 GGGTTTA
*
549266 -GGTTCA
1 GGGTTTA
*
549272 GGGTTCA
1 GGGTTTA
*
549279 GGGTTCA
1 GGGTTTA
*
549286 GGGTTCA
1 GGGTTTA
*
549293 GGGTTCA
1 GGGTTTA
*
549300 GGGTTCA
1 GGGTTTA
*
549307 GGGTTCA
1 GGGTTTA
*
549314 GGGTTCA
1 GGGTTTA
*
549321 GGGTTCA
1 GGGTTTA
*
549328 GGGTTCA
1 GGGTTTA
549335 -GGTTTCA
1 GGGTTT-A
*
549342 GGGTTCA
1 GGGTTTA
*
549349 -GGTTCA
1 GGGTTTA
*
549355 GGGTTCA
1 GGGTTTA
*
549362 GGG-TCA
1 GGGTTTA
*
549368 GGGTTCA
1 GGGTTTA
*
549375 GGGTTCA
1 GGGTTTA
*
549382 GGGTTCA
1 GGGTTTA
*
549389 GGGTTCA
1 GGGTTTA
*
549396 -GGTTCA
1 GGGTTTA
*
549402 GGGTTCA
1 GGGTTTA
*
549409 GGGTTCA
1 GGGTTTA
*
549416 -GGTTCA
1 GGGTTTA
*
549422 GGGTTCA
1 GGGTTTA
*
549429 GGGTTCA
1 GGGTTTA
*
549436 GGGTTCA
1 GGGTTTA
*
549443 GGGTTCA
1 GGGTTTA
*
549450 GGTTTTCA
1 GGGTTT-A
*
549458 GGGTTCA
1 GGGTTTA
549465 GGGTT
1 GGGTT
549470 CAGG
Statistics
Matches: 5903, Mismatches: 226, Indels: 452
0.90 0.03 0.07
Matches are distributed among these distances:
4 7 0.00
5 50 0.01
6 961 0.16
7 4613 0.78
8 206 0.03
9 50 0.01
10 16 0.00
ACGTcount: A:0.09, C:0.07, G:0.47, T:0.36
Consensus pattern (7 bp):
GGGTTTA
Done.