genome.fa.s9216.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009216.1 Hibiscus syriacus cultivar Beakdansim tig00112804_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66994

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3800--3838	14	2.8	14	92	0	69	20	15	17	46	1.84
11060--11107	21	2.2	22	82	10	55	25	10	4	60	1.47
15358--15836	258	1.9	260	85	3	671	22	29	13	34	1.92
20168--20228	31	2.0	31	87	6	88	26	6	11	55	1.59
24303--24423	65	1.9	63	83	8	154	30	18	23	28	1.97
24323--24478	64	2.4	65	84	5	183	30	18	22	28	1.97
24366--24491	64	2.0	64	84	3	164	28	17	23	30	1.97
24366--24510	64	2.3	64	81	4	150	28	18	23	28	1.98
26009--26049	21	2.0	21	100	0	82	36	9	19	34	1.85
27089--27190	22	4.7	22	79	8	104	28	21	26	23	1.99
42520--42707	64	2.9	64	84	3	200	30	17	20	31	1.96
48027--48148	28	4.4	28	88	1	165	36	11	11	40	1.77
48027--48164	28	5.1	27	83	6	120	33	11	13	42	1.80
48984--49024	22	2.0	21	90	9	66	48	4	0	46	1.23
49504--49601	37	2.6	37	96	0	178	23	10	30	35	1.88
53805--53855	19	2.7	19	90	0	75	19	25	29	25	1.99
53805--53853	9	5.1	10	78	9	57	20	22	30	26	1.98
53849--53889	17	2.4	17	95	0	73	19	43	21	14	1.87
53879--53922	7	6.4	7	89	5	63	20	29	25	25	1.99
53879--53916	20	1.9	20	94	0	67	18	31	26	23	1.97
61087--61175	19	4.6	19	87	4	74	19	23	30	26	1.98
61087--61174	10	9.1	10	74	7	83	19	22	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61105--61176	19	3.8	19	89	5	110	18	26	30	25	1.98
61087--61176	38	2.3	38	84	5	110	18	24	30	26	1.98
61170--61227	17	3.4	17	95	0	98	15	43	24	17	1.87
61219--61253	7	5.1	7	86	6	54	17	31	25	25	1.97
62928--62972	21	2.1	21	87	0	63	28	24	17	28	1.97

Tables:   1

The End!