genome.fa.s9218.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009218.1 Hibiscus syriacus cultivar Beakdansim tig00112807_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103523

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268--342	31	2.5	31	86	2	116	24	6	18	50	1.70
815--882	31	2.2	31	86	0	91	55	11	5	26	1.58
10162--10525	20	18.5	20	82	7	413	34	26	19	20	1.96
13719--14006	19	16.4	19	77	17	320	47	18	20	14	1.83
13719--13808	34	2.7	33	88	6	128	46	20	20	13	1.83
13719--13987	33	7.8	33	75	17	180	47	18	20	14	1.83
13747--14028	52	5.4	55	86	10	291	46	17	20	14	1.83
13747--14028	33	8.1	36	81	15	262	46	17	20	14	1.83
13805--14044	71	3.4	71	79	13	259	46	17	20	15	1.84
14035--14136	19	5.6	19	85	12	151	14	23	17	44	1.86
14243--14279	14	2.6	14	91	0	65	45	21	0	32	1.52
14274--14346	12	6.0	12	67	20	53	57	16	1	24	1.47
14260--14332	38	1.9	38	97	0	137	53	16	1	28	1.51
16199--16255	14	3.7	14	77	20	60	45	22	21	10	1.82
16180--16272	33	2.8	33	95	0	168	47	21	20	10	1.80
16143--16277	19	7.6	19	76	16	128	45	23	19	11	1.82
16273--16401	19	7.3	19	75	17	125	8	17	28	45	1.77
16273--16364	33	2.8	33	93	3	150	7	18	28	45	1.76
16445--16823	93	4.1	93	98	1	744	46	18	12	22	1.83
16445--16823	185	2.0	185	98	1	742	46	18	12	22	1.83
18522--18611	14	5.7	14	72	23	72	41	23	26	8	1.84
18514--18628	33	3.5	33	92	0	203	44	20	25	9	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18521--18633	19	6.8	18	70	23	79	42	22	25	9	1.84
18645--18699	14	3.6	14	73	21	56	9	27	23	40	1.85
18820--18890	33	2.2	33	92	0	115	47	18	22	11	1.80
19270--19463	20	9.6	20	82	5	221	19	19	25	35	1.95
19270--19463	60	3.2	60	83	0	253	19	19	25	35	1.95
19456--19532	21	3.7	20	70	13	57	27	16	23	32	1.96
19518--19569	20	2.6	20	96	0	95	21	13	26	38	1.90
20614--20646	12	2.8	12	86	13	50	6	33	0	60	1.21
23986--24016	14	2.2	14	100	0	62	16	41	12	29	1.85
27733--27803	18	3.7	19	69	29	53	49	2	0	47	1.16
35512--35552	23	1.9	22	85	14	59	63	0	0	36	0.95
38423--38698	126	2.2	126	79	10	289	48	6	19	25	1.73
38423--38698	42	6.6	42	71	12	165	48	6	19	25	1.73
38725--38788	23	2.9	22	75	13	69	65	4	4	25	1.31
50290--50340	25	1.9	28	88	11	81	45	1	0	52	1.12
50352--50460	50	2.2	49	79	11	114	55	0	2	41	1.21
50415--50476	18	3.4	17	77	14	61	59	0	0	40	0.97
50407--50483	31	2.4	32	80	16	81	58	0	1	40	1.06
50419--50487	25	2.8	23	77	14	66	59	0	0	40	0.97
50457--50481	7	3.6	7	100	0	50	60	0	0	40	0.97
50366--50487	50	2.4	52	78	12	119	54	0	2	41	1.19
58763--58867	37	2.8	37	86	0	147	40	14	15	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63657--63706	16	3.2	16	81	15	61	76	8	16	0	1.02
63662--63697	8	4.5	8	86	13	56	75	11	13	0	1.06
64510--64564	22	2.5	22	93	0	92	38	25	10	25	1.88
65415--67171	106	16.6	106	93	0	2861	34	25	17	22	1.96
67903--68007	37	2.8	37	89	0	165	40	15	14	29	1.86
68565--68602	12	3.2	12	84	0	58	28	5	0	65	1.14
68618--68670	25	2.0	28	89	10	85	32	0	1	66	1.03
69096--69160	2	32.5	2	100	0	130	49	0	0	50	1.00
72202--72574	155	2.4	156	85	4	491	48	6	18	26	1.71
72791--72863	31	2.4	31	85	0	92	53	0	0	46	1.00
72881--72917	12	3.0	12	84	7	56	29	51	10	8	1.65
72878--72915	13	3.0	13	88	3	60	26	52	13	7	1.67
73226--73255	14	2.1	14	93	0	51	53	23	0	23	1.46
89814--89843	12	2.5	12	94	0	51	46	23	13	16	1.82
89914--89973	21	2.9	21	89	0	93	30	26	18	25	1.98
90539--90602	21	3.0	21	81	4	83	29	21	25	23	1.99
96075--96107	14	2.4	14	100	0	66	33	33	0	33	1.58
97320--97399	34	2.4	34	97	0	151	43	25	6	25	1.77
97636--97874	20	11.9	20	76	14	167	40	24	20	15	1.90
97717--97886	20	8.4	20	83	6	218	37	26	21	14	1.92
97982--98036	6	9.2	6	100	0	110	34	49	16	0	1.46
98788--98862	6	12.5	6	100	0	150	0	16	50	33	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98973--99040	20	3.4	20	78	8	84	16	22	25	36	1.94
98956--99060	40	2.6	40	74	15	117	13	20	22	42	1.87
98986--99102	20	5.9	19	73	13	85	17	21	19	41	1.90
99383--99425	14	3.4	13	81	12	54	32	0	0	67	0.91
100336--100382	23	2.0	23	84	8	60	44	0	2	53	1.12
100375--100435	23	2.6	23	84	2	68	50	1	1	45	1.21
100541--100601	19	3.3	19	75	15	65	50	0	3	45	1.17
100531--100602	19	3.9	17	75	17	56	52	1	2	43	1.24
100765--100841	30	2.6	29	95	4	145	33	19	7	38	1.81
100765--100839	15	5.1	15	83	3	107	32	20	8	40	1.81
101864--102125	43	6.1	42	80	8	260	34	21	22	21	1.97
101889--102125	85	2.8	85	84	7	286	34	22	22	21	1.97

Tables:   1

The End!