genome.fa.s9219.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009219.1 Hibiscus syriacus cultivar Beakdansim tig00112808_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109438

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7890--7927	20	1.9	20	88	0	58	10	31	34	23	1.89
14679--14716	20	1.9	20	88	0	58	10	31	34	23	1.89
14743--14785	21	2.0	21	86	0	59	16	25	27	30	1.97
17205--17241	18	2.1	18	85	14	51	45	2	0	51	1.15
18155--18220	28	2.4	27	82	5	96	15	9	33	42	1.78
31471--31517	20	2.4	19	83	13	60	63	6	2	27	1.30
39041--39253	108	2.0	108	96	0	390	31	15	27	25	1.95
41792--41867	35	2.2	35	82	0	89	51	7	0	40	1.31
42430--42457	13	2.2	13	100	0	56	64	7	0	28	1.20
46016--46105	19	4.4	19	85	12	108	36	5	30	27	1.80
46050--46105	19	2.9	19	100	0	112	37	5	30	26	1.79
46528--46698	21	8.3	21	71	7	109	33	23	19	22	1.97
46509--46597	40	2.2	40	91	0	151	33	23	21	21	1.97
46501--46637	21	6.9	19	73	9	94	34	21	21	22	1.97
46528--46662	61	2.2	61	91	0	216	32	25	20	21	1.98
46552--46679	61	2.1	61	89	0	193	34	23	21	21	1.97
46589--46698	42	2.7	40	82	2	148	35	22	19	22	1.96
48268--48301	15	2.3	15	94	0	59	8	41	2	47	1.50
48967--49025	27	2.2	27	100	0	118	30	13	23	32	1.93
50229--50268	18	2.2	18	86	0	53	35	5	42	17	1.71
50229--50261	12	2.8	12	95	0	57	36	6	39	18	1.75
64898--64937	21	1.9	21	89	0	62	25	40	25	10	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73226--73670	223	2.0	223	97	0	845	26	17	22	33	1.96
81199--81226	11	2.5	11	100	0	56	64	0	7	28	1.20
83187--83266	9	8.3	9	80	10	70	28	26	28	16	1.97
83193--83267	29	2.5	31	89	8	120	29	26	26	17	1.97
90384--90439	17	3.3	17	100	0	112	12	23	46	17	1.82
90435--90503	9	7.3	9	80	8	75	28	28	27	14	1.95
90435--90503	28	2.4	27	81	9	75	28	28	27	14	1.95
90441--90503	19	3.3	19	86	4	83	30	30	25	14	1.95
92235--92304	12	5.8	12	76	6	61	51	18	12	17	1.76
92231--92341	48	2.3	48	85	3	143	47	17	13	21	1.81
92234--92339	24	4.4	24	71	7	90	47	17	13	21	1.82
94734--94773	13	3.1	13	100	0	80	15	22	45	17	1.85
101551--101607	29	2.0	28	89	3	87	43	14	31	10	1.79
106481--106520	18	2.2	19	90	4	64	62	0	7	30	1.23
106570--106614	2	22.5	2	81	0	54	51	4	2	42	1.34
106564--106608	14	3.1	14	84	12	63	53	6	2	37	1.40
106564--106617	16	3.5	15	80	12	65	53	5	1	38	1.35
106688--106721	16	2.1	16	88	0	50	61	5	14	17	1.52
108175--108499	43	7.7	42	71	14	156	26	17	31	23	1.97
108175--108551	127	2.9	127	90	4	589	26	18	31	23	1.97
108221--108541	43	7.5	44	71	15	147	27	18	29	24	1.98
108346--108557	46	4.8	45	73	13	136	26	19	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108570--108657	27	3.1	28	78	14	92	44	14	12	28	1.82
109171--109227	27	2.1	27	90	6	89	47	12	8	31	1.72
109171--109226	26	2.1	27	90	3	87	48	12	8	30	1.72
109102--109317	92	2.4	89	78	14	217	43	12	12	32	1.79

Tables:   1

The End!