Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000922.1 Hibiscus syriacus cultivar Beakdansim tig00001839_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68411
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Found at i:5450 original size:288 final size:286
Alignment explanation
Indices: 4919--5485 Score: 989
Period size: 288 Copynumber: 2.0 Consensus size: 286
4909 AATTCAAGTA
*
4919 TCAGTACTGTTCTTGTATAAGTAATACATGATTAAAATATATTTTCGACTCGATTAAAATCCGAA
1 TCAGTACTGTTCTTGTATAAGTAATACAGGATTAAAATATATTTTCGACTCGATTAAAATCCGAA
4984 CCCTTTGTAAAAACATTTGAAAATTAATTATAGTATATGACTTGAATTTTCAAAAGAGTAAGGAG
66 CCCTTTGTAAAAACATTTGAAAATTAATTATAGTATATGACTTGAATTTTCAAAAGAGTAAGGAG
*
5049 TTAAAATGGAGTTTTGACCTTAAGAAGAATTTCTATATTCGAATGATTGAATCGAATATGATTAG
131 TTAAAATGGAGTTTTGACCTTAAGAAGAATTTCTATATTCGAACGATTGAATCGAATATGATTAG
5114 AAAATTGGATTAAAAGAAATATTAAAATTTCTTTTAAAACATTTAATTTTGGTATATCAAAATTC
196 AAAATTGGATTAAAAGAAATATTAAAATTTCTTTTAAAACATTTAATTTTGGTATATCAAAATTC
* *
5179 CATAGCGTGTTTCAACAATGTCCCTT
261 CAAAGCATGTTTCAACAATGTCCCTT
5205 TCAGTACTGTTCTTGTAGTATAAGTAATACAGGATTAAAAT-TGATTTTCGACTCGATT-AAATC
1 TCAGTACTGTTC-T-T-GTATAAGTAATACAGGATTAAAATAT-ATTTTCGACTCGATTAAAATC
5268 CGAAACCCTTTGT-AAAACATTTGAAAATTAATTATAGTATATGACTTGAATTTTCAAAAGAGTA
62 CG-AACCCTTTGTAAAAACATTTGAAAATTAATTATAGTATATGACTTGAATTTTCAAAAGAGTA
*
5332 AGGAGTTAAAATGGAGTTTTTGACCTTAAGAAGAA-TTCTATATTCGAACGATTGAATTGAATAT
126 AGGAGTTAAAATGGAG-TTTTGACCTTAAGAAGAATTTCTATATTCGAACGATTGAATCGAATAT
5396 GATTAGAAAATTGGATTAAAAGAAATATTAAAATTTCTTTTAAAACATTTAATTTTGGTATATCA
190 GATTAGAAAATTGGATTAAAAGAAATATTAAAATTTCTTTTAAAACATTTAATTTTGGTATATCA
* *
5461 AAATTTCAAATCATGTTTCAACAAT
255 AAATTCCAAAGCATGTTTCAACAAT
5486 CTCTCTCTTT
Statistics
Matches: 268, Mismatches: 7, Indels: 10
0.94 0.02 0.04
Matches are distributed among these distances:
286 12 0.04
287 1 0.00
288 189 0.71
289 66 0.25
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (286 bp):
TCAGTACTGTTCTTGTATAAGTAATACAGGATTAAAATATATTTTCGACTCGATTAAAATCCGAA
CCCTTTGTAAAAACATTTGAAAATTAATTATAGTATATGACTTGAATTTTCAAAAGAGTAAGGAG
TTAAAATGGAGTTTTGACCTTAAGAAGAATTTCTATATTCGAACGATTGAATCGAATATGATTAG
AAAATTGGATTAAAAGAAATATTAAAATTTCTTTTAAAACATTTAATTTTGGTATATCAAAATTC
CAAAGCATGTTTCAACAATGTCCCTT
Found at i:7159 original size:23 final size:23
Alignment explanation
Indices: 7129--7183 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
7119 ATAAATGAAT
7129 CGAAGTGC-CACGTAGAATTGCAC
1 CGAAGTGCTCA-GTAGAATTGCAC
*
7152 CGAAGTGCTGAGTAGAATTGCAC
1 CGAAGTGCTCAGTAGAATTGCAC
*
7175 TGAAGTGCT
1 CGAAGTGCT
7184 ATATAAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 28 0.97
24 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (23 bp):
CGAAGTGCTCAGTAGAATTGCAC
Found at i:8257 original size:21 final size:22
Alignment explanation
Indices: 8222--8266 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
8212 TTCACATAGT
8222 CTTATATTTCATTATCATATGA
1 CTTATATTTCATTATCATATGA
* *
8244 CTTATATTT-GTTATCCTATGA
1 CTTATATTTCATTATCATATGA
8265 CT
1 CT
8267 CTTCATAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.27, C:0.16, G:0.07, T:0.51
Consensus pattern (22 bp):
CTTATATTTCATTATCATATGA
Found at i:8778 original size:20 final size:20
Alignment explanation
Indices: 8742--8779 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8732 TTCCCCTTGA
*
8742 AGTGCATCGATATATTCTAT
1 AGTGCATCGATACATTCTAT
*
8762 AGTGCATCGATGCATTCT
1 AGTGCATCGATACATTCT
8780 TTAACATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (20 bp):
AGTGCATCGATACATTCTAT
Found at i:8874 original size:64 final size:64
Alignment explanation
Indices: 8787--8948 Score: 193
Period size: 64 Copynumber: 2.5 Consensus size: 64
8777 TCTTTAACAT
* * * * *
8787 GTGCATCGATGAACTACCCATGCATCGATACACAAA-TCACATTCGATGTTTTCATTTTTAGGGG
1 GTGCATCGATGCACTTCCTATGCATCGATACACAAACT-ACATTCGATGTTTCCATTTTTAAGGG
* * * * *
8851 GTGCATTGATGCAC-TCCTTATGCATCGATGCACTAACTGCATTCGATGTTTCCATTTTTAATGG
1 GTGCATCGATGCACTTCC-TATGCATCGATACACAAACTACATTCGATGTTTCCATTTTTAAGGG
*
8915 GTGCATCGATGCACTTCCTGTGCATCGATACACA
1 GTGCATCGATGCACTTCCTATGCATCGATACACA
8949 CTGAACAATT
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
63 2 0.02
64 75 0.93
65 4 0.05
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (64 bp):
GTGCATCGATGCACTTCCTATGCATCGATACACAAACTACATTCGATGTTTCCATTTTTAAGGG
Found at i:13999 original size:64 final size:64
Alignment explanation
Indices: 13912--14055 Score: 175
Period size: 64 Copynumber: 2.2 Consensus size: 64
13902 TCTTTAACAT
* * *
13912 GTGCATCGATGAACTACCCATGCATCGATACACAAATCACCTTCGATGTTTTCA-TTTTAAGGGG
1 GTGCATCGATGCACTACCCATGCATCGATACACAAATCACATTCGATGTTTCCATTTTTAA-GGG
* * * ** *
13976 GTGCATCGATGCACT-CCTTATGCATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGG
1 GTGCATCGATGCACTACC-CATGCATCGATACACAAATCACATTCGATGTTTCCATTTTTAAGGG
14040 GTGCATCGATGCACTA
1 GTGCATCGATGCACTA
14056 ATTGCATTCG
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
63 2 0.03
64 60 0.88
65 6 0.09
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (64 bp):
GTGCATCGATGCACTACCCATGCATCGATACACAAATCACATTCGATGTTTCCATTTTTAAGGG
Found at i:14046 original size:45 final size:45
Alignment explanation
Indices: 13996--14094 Score: 198
Period size: 45 Copynumber: 2.2 Consensus size: 45
13986 GCACTCCTTA
13996 TGCATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGGG
1 TGCATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGGG
14041 TGCATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGGG
1 TGCATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGGG
14086 TGCATCGAT
1 TGCATCGAT
14095 ACATATTGAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.39
Consensus pattern (45 bp):
TGCATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGGG
Found at i:19746 original size:22 final size:22
Alignment explanation
Indices: 19721--19766 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
19711 GATTCTCCCG
19721 TTCCATTCTCTAGTAAGATTGA
1 TTCCATTCTCTAGTAAGATTGA
19743 TTCCATTCTCTAGTAAGATTGA
1 TTCCATTCTCTAGTAAGATTGA
19765 TT
1 TT
19767 AGAAATCGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.43
Consensus pattern (22 bp):
TTCCATTCTCTAGTAAGATTGA
Found at i:26719 original size:25 final size:27
Alignment explanation
Indices: 26652--26717 Score: 84
Period size: 26 Copynumber: 2.5 Consensus size: 27
26642 TTATGAATTG
* *
26652 ATTAAAATGTTATTTAATTATTTTGAA
1 ATTAAAATCTTATTTAATTATTCTGAA
26679 A-TAAAATCTTATTTAATTATTCT-AA
1 ATTAAAATCTTATTTAATTATTCTGAA
26704 ATTAAATAT-TTATT
1 ATTAAA-ATCTTATT
26718 AAAAGAGTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 3 0.09
26 29 0.83
27 3 0.09
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (27 bp):
ATTAAAATCTTATTTAATTATTCTGAA
Found at i:29919 original size:140 final size:141
Alignment explanation
Indices: 29748--30003 Score: 397
Period size: 141 Copynumber: 1.8 Consensus size: 141
29738 CAAATACATT
* * *
29748 ACATCAATCACTAAATGTGATGAAAACAAAAAAA-TGTCATGCTTGTGGTATATTTGGTGACGTT
1 ACATCAATCACTAAATGTGACGAAAACAAAAAAAGTATCATGCTTATGGTATATTTGGTGACGTT
* *
29812 ATACATAGCGTCATATAAAAATTTTGTCATAAATGGATAAATTTGTTGTAGTAAATTTTGAATCA
66 ATACATAGCGTCATATAAAAACTTTGTCATAAATAGATAAATTTGTTGTAGTAAATTTTGAATCA
29877 TCAAAAGCATA
131 TCAAAAGCATA
* * * * *
29888 ACATCGATCATTAAATGTGACGAAGACAAAAAAAGTATCATGTTTATGGTATATTTGGTGATGTT
1 ACATCAATCACTAAATGTGACGAAAACAAAAAAAGTATCATGCTTATGGTATATTTGGTGACGTT
* *
29953 ATACATAGCGTTATATAAAAACTTTGTCATAAATAGATAAATTTTTTGTAG
66 ATACATAGCGTCATATAAAAACTTTGTCATAAATAGATAAATTTGTTGTAG
30004 GGAATTCTGA
Statistics
Matches: 103, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
140 30 0.29
141 73 0.71
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (141 bp):
ACATCAATCACTAAATGTGACGAAAACAAAAAAAGTATCATGCTTATGGTATATTTGGTGACGTT
ATACATAGCGTCATATAAAAACTTTGTCATAAATAGATAAATTTGTTGTAGTAAATTTTGAATCA
TCAAAAGCATA
Found at i:30841 original size:2 final size:2
Alignment explanation
Indices: 30834--30897 Score: 110
Period size: 2 Copynumber: 31.5 Consensus size: 2
30824 TAATTAAAAT
*
30834 TA TA TA TA TA TCA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
30877 TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
30898 TAACTTTAGT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 58 0.98
3 1 0.02
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:49064 original size:57 final size:58
Alignment explanation
Indices: 48974--49086 Score: 176
Period size: 57 Copynumber: 2.0 Consensus size: 58
48964 ACCAATGACC
*
48974 ACCATAACCAAGGGGAAAGAAAGATTGATAGGAACCTCTAAGGAAGGAGATTTCACCA
1 ACCATAACCAAGGGGAAAGAAAGATTGAGAGGAACCTCTAAGGAAGGAGATTTCACCA
* *
49032 ACCA-AACTAAGGGGAAATG-AAGCTTGAGAGGAACCTCTAAGGAAGGAGATTTCAC
1 ACCATAACCAAGGGGAAA-GAAAGATTGAGAGGAACCTCTAAGGAAGGAGATTTCAC
49087 AATTTACCAC
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
57 46 0.90
58 5 0.10
ACGTcount: A:0.42, C:0.17, G:0.26, T:0.16
Consensus pattern (58 bp):
ACCATAACCAAGGGGAAAGAAAGATTGAGAGGAACCTCTAAGGAAGGAGATTTCACCA
Found at i:56984 original size:15 final size:14
Alignment explanation
Indices: 56960--57033 Score: 62
Period size: 15 Copynumber: 5.2 Consensus size: 14
56950 ATCTTTTATA
*
56960 TTATATTTATGATTT
1 TTATAATTAT-ATTT
*
56975 TTATAGTTAT-TTT
1 TTATAATTATATTT
*
56988 TAATAATTATCATTT
1 TTATAATTAT-ATTT
*
57003 TTATAGTTAT-TTT
1 TTATAATTATATTT
*
57016 TAATAATTATCATTT
1 TTATAATTAT-ATTT
57031 TTA
1 TTA
57034 ATGTTTAAAC
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
13 22 0.47
15 25 0.53
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (14 bp):
TTATAATTATATTT
Found at i:56989 original size:21 final size:20
Alignment explanation
Indices: 56944--56989 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
56934 TCAAACACAC
56944 TTTTATATCTTTTATATTAT
1 TTTTATATCTTTTATATTAT
*
56964 ATTTATGAT-TTTTATAGTTAT
1 TTTTAT-ATCTTTTATA-TTAT
56985 TTTTA
1 TTTTA
56990 ATAATTATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.67
Consensus pattern (20 bp):
TTTTATATCTTTTATATTAT
Found at i:56997 original size:13 final size:13
Alignment explanation
Indices: 56971--57025 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
56961 TATATTTATG
*
56971 ATTTTT-ATAGTT
1 ATTTTTAATAATT
56983 ATTTTTAATAATT
1 ATTTTTAATAATT
* *
56996 ATCATTTTTATAGTT
1 AT--TTTTAATAATT
57011 ATTTTTAATAATT
1 ATTTTTAATAATT
57024 AT
1 AT
57026 CATTTTTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
12 6 0.17
13 18 0.51
15 11 0.31
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.62
Consensus pattern (13 bp):
ATTTTTAATAATT
Found at i:56997 original size:28 final size:28
Alignment explanation
Indices: 56966--57033 Score: 127
Period size: 28 Copynumber: 2.4 Consensus size: 28
56956 TATATTATAT
*
56966 TTATGATTTTTATAGTTATTTTTAATAA
1 TTATCATTTTTATAGTTATTTTTAATAA
56994 TTATCATTTTTATAGTTATTTTTAATAA
1 TTATCATTTTTATAGTTATTTTTAATAA
57022 TTATCATTTTTA
1 TTATCATTTTTA
57034 ATGTTTAAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (28 bp):
TTATCATTTTTATAGTTATTTTTAATAA
Found at i:57004 original size:16 final size:16
Alignment explanation
Indices: 56983--57035 Score: 69
Period size: 16 Copynumber: 3.6 Consensus size: 16
56973 TTTTATAGTT
56983 ATTTTTAATAATTATC
1 ATTTTTAATAATTATC
*
56999 ATTTTT-AT-AGT-T-
1 ATTTTTAATAATTATC
57011 ATTTTTAATAATTATC
1 ATTTTTAATAATTATC
57027 ATTTTTAAT
1 ATTTTTAAT
57036 GTTTAAACTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
12 6 0.19
13 3 0.10
14 4 0.13
15 3 0.10
16 15 0.48
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (16 bp):
ATTTTTAATAATTATC
Found at i:61291 original size:79 final size:79
Alignment explanation
Indices: 61189--61348 Score: 248
Period size: 79 Copynumber: 2.0 Consensus size: 79
61179 TTCTTGCGAC
* * *
61189 GAAATTTAAGTAACTAAACATGAATAAAATGCTAGCAAACAAATTATATCTGAACCACCATTCAC
1 GAAATTTAAGTAACTAAACATGAATAAAATACTAACAAACAAATTAGATCTGAACCACCATTCAC
61254 ATAAGTTAACAGAA
66 ATAAGTTAACAGAA
* * * *
61268 GAAATTTGAGTAACTAAGCATGAATAAAATACTAACAAACAAATTAGATTTGAACCATCATTCAC
1 GAAATTTAAGTAACTAAACATGAATAAAATACTAACAAACAAATTAGATCTGAACCACCATTCAC
*
61333 ATAAGTTAATAGAA
66 ATAAGTTAACAGAA
61347 GA
1 GA
61349 CTAATCTCTT
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.25
Consensus pattern (79 bp):
GAAATTTAAGTAACTAAACATGAATAAAATACTAACAAACAAATTAGATCTGAACCACCATTCAC
ATAAGTTAACAGAA
Found at i:62555 original size:18 final size:18
Alignment explanation
Indices: 62518--62555 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
62508 TTTTAAGATT
*
62518 TTATATTCGATTTAAATA
1 TTATATTCGATTCAAATA
*
62536 TTATATTCGATTCAATTA
1 TTATATTCGATTCAAATA
62554 TT
1 TT
62556 CGAATATCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.53
Consensus pattern (18 bp):
TTATATTCGATTCAAATA
Found at i:62662 original size:25 final size:25
Alignment explanation
Indices: 62634--62694 Score: 113
Period size: 25 Copynumber: 2.4 Consensus size: 25
62624 GATTTATACT
62634 CAAAGTATTTTAGAAATAATTTTTA
1 CAAAGTATTTTAGAAATAATTTTTA
*
62659 CAAAGTATTTTTGAAATAATTTTTA
1 CAAAGTATTTTAGAAATAATTTTTA
62684 CAAAGTATTTT
1 CAAAGTATTTT
62695 GAACCATAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (25 bp):
CAAAGTATTTTAGAAATAATTTTTA
Found at i:62668 original size:13 final size:13
Alignment explanation
Indices: 62634--62694 Score: 58
Period size: 13 Copynumber: 4.8 Consensus size: 13
62624 GATTTATACT
62634 CAAAGTA-TTTTA
1 CAAAGTATTTTTA
*
62646 GAAA-TAATTTTTA
1 CAAAGT-ATTTTTA
62659 CAAAGTATTTTT-
1 CAAAGTATTTTTA
*
62671 GAAA-TAATTTTTA
1 CAAAGT-ATTTTTA
62684 CAAAGTATTTT
1 CAAAGTATTTT
62695 GAACCATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
11 2 0.05
12 13 0.33
13 22 0.56
14 2 0.05
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (13 bp):
CAAAGTATTTTTA
Found at i:65079 original size:21 final size:20
Alignment explanation
Indices: 65055--65094 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
65045 AGAGTCAATA
*
65055 ATGATCATCAAAAGAAAATTG
1 ATGATC-TCAAAAAAAAATTG
*
65076 ATGATCTTAAAAAAAAATT
1 ATGATCTCAAAAAAAAATT
65095 CAATAGAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.28
Consensus pattern (20 bp):
ATGATCTCAAAAAAAAATTG
Done.