genome.fa.s9220.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009220.1 Hibiscus syriacus cultivar Beakdansim tig00112809_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61580

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6259--6314	17	3.3	17	100	0	112	12	23	46	17	1.82
6310--6378	9	7.3	9	80	8	75	28	28	27	14	1.95
6310--6378	28	2.4	27	81	9	75	28	28	27	14	1.95
6316--6399	9	8.7	10	76	12	70	32	27	23	16	1.96
6316--6378	19	3.3	19	86	4	83	30	30	25	14	1.95
8124--8193	12	5.8	12	76	6	61	51	18	12	17	1.76
8120--8230	48	2.3	48	85	3	143	47	17	13	21	1.81
8123--8228	24	4.4	24	71	7	90	47	17	13	21	1.82
10634--10673	13	3.1	13	100	0	80	15	22	45	17	1.85
17491--17549	29	2.0	29	93	0	100	45	13	30	10	1.76
22471--22510	18	2.2	19	90	4	64	62	0	7	30	1.23
22561--22603	2	21.5	2	85	0	59	51	2	2	44	1.27
22556--22604	14	3.3	15	88	5	66	53	4	2	40	1.32
22683--22716	16	2.1	16	88	0	50	61	5	14	17	1.52
24200--24576	46	8.7	42	71	14	204	26	18	31	24	1.98
24164--24576	129	3.2	129	92	0	664	25	18	31	24	1.97
24199--24524	40	7.6	43	72	12	174	26	18	31	23	1.97
24239--24582	46	7.9	45	72	14	231	26	19	30	24	1.98
24615--24683	28	2.4	28	88	7	95	44	14	11	28	1.80
25200--25256	27	2.1	27	90	6	89	47	12	8	31	1.72
25200--25255	26	2.1	27	90	3	87	48	12	8	30	1.72
25131--25349	91	2.3	93	81	12	252	42	11	12	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25194--25451	119	2.1	121	78	11	280	44	11	13	30	1.79
25393--25518	67	1.9	66	83	8	166	47	10	11	30	1.73
25472--25535	30	2.1	30	88	0	92	40	15	7	35	1.76
25523--25625	52	2.0	53	94	1	181	35	18	13	32	1.90
25622--25745	29	4.4	29	83	7	132	48	15	10	25	1.77
25636--25731	29	3.4	29	87	4	135	46	15	10	27	1.78
25622--25745	57	2.2	54	80	8	133	48	15	10	25	1.77
26045--26148	36	3.0	35	78	4	104	36	11	19	32	1.87
26041--26164	36	3.5	36	75	8	94	38	12	19	29	1.88
26320--26401	36	2.3	36	78	4	94	31	12	19	36	1.89
26320--26414	36	2.6	36	78	3	93	35	11	17	34	1.86
26262--26580	167	1.9	166	84	7	423	37	11	17	32	1.87
26504--26621	36	3.3	35	83	9	157	36	12	16	33	1.87
26982--27029	20	2.4	20	89	0	78	25	0	27	47	1.52
28228--28265	11	3.4	11	89	7	58	5	13	10	71	1.30
28875--28968	46	2.1	45	85	2	125	37	9	26	26	1.87
30158--30219	32	2.0	32	96	3	117	61	9	14	14	1.57
31907--31946	18	2.2	19	90	4	64	62	0	7	30	1.23
31997--32047	2	25.5	2	83	0	66	50	3	1	43	1.31
31991--32039	16	3.1	16	90	0	80	53	6	2	38	1.38
31991--32047	16	3.6	16	90	0	78	52	5	1	40	1.34
32126--32160	16	2.2	16	89	0	52	62	5	14	17	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36953--36990	12	3.3	12	82	14	53	52	0	7	39	1.31
37941--37971	14	2.2	14	94	0	53	77	0	9	12	0.99
38696--38750	24	2.2	25	81	18	71	60	7	3	29	1.41
38704--38756	24	2.2	24	87	9	74	67	3	3	24	1.23
38991--39039	20	2.5	20	96	0	89	32	12	44	10	1.75
39660--40249	170	3.5	170	98	0	1126	23	17	25	33	1.96
39787--39902	44	2.6	44	84	10	130	25	16	23	35	1.95
47774--47853	39	2.1	39	88	4	117	21	21	27	30	1.98
51413--51443	14	2.2	14	94	0	53	77	0	9	12	0.99
52170--52224	24	2.2	25	81	18	71	60	7	3	29	1.41
52178--52230	24	2.2	24	87	9	74	67	3	3	24	1.23
52461--52509	20	2.5	20	96	0	89	32	12	44	10	1.75
59796--59848	26	2.0	26	81	0	61	45	7	20	26	1.78

Tables:   1

The End!