genome.fa.s9224.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009224.1 Hibiscus syriacus cultivar Beakdansim tig00112825_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67613

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3274--3322	22	2.2	22	81	0	62	28	18	16	36	1.92
15679--15764	32	2.8	32	86	10	117	33	16	20	29	1.95
23937--24104	67	2.5	67	86	0	210	32	27	13	26	1.93
26222--26268	23	2.0	23	88	8	69	34	12	6	46	1.67
29721--29746	8	3.2	8	100	0	52	73	0	0	26	0.84
38972--39192	112	2.0	112	92	5	376	29	14	19	35	1.92
39765--39825	30	2.0	32	87	6	90	22	21	14	40	1.90
40973--41563	321	1.9	320	93	4	1043	27	13	12	46	1.80
42187--42279	21	4.6	20	78	4	96	38	18	24	18	1.92
42184--42279	41	2.3	41	98	0	183	39	17	23	18	1.92
42187--42279	20	4.6	20	78	4	96	38	18	24	18	1.92
42268--42378	20	5.7	19	73	13	66	36	23	18	22	1.95
42310--42340	16	1.9	16	93	0	53	29	29	19	22	1.98
42546--42589	22	2.0	22	95	0	79	20	45	15	18	1.85
42833--42870	20	1.9	20	88	0	58	13	15	21	50	1.78
44177--44221	18	2.5	18	85	0	63	26	42	15	15	1.87
44687--44753	20	3.4	20	81	2	73	38	23	22	14	1.92
44742--44799	14	3.9	14	79	16	71	48	25	17	8	1.75
44726--44816	32	2.8	33	94	3	166	47	23	18	10	1.80
44687--44821	19	7.6	19	71	19	85	42	23	20	12	1.86
44828--44950	20	6.7	19	76	10	96	13	20	23	42	1.88
44811--44950	39	3.8	36	72	16	117	14	20	24	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46786--46821	14	2.6	14	90	0	54	30	0	22	47	1.52
46928--47004	14	4.7	15	74	22	59	45	19	22	12	1.84
46938--47004	18	3.8	19	81	18	92	46	17	22	13	1.83
46994--47035	19	2.2	19	100	0	84	19	23	16	40	1.91
47051--47081	15	2.1	15	93	0	53	22	19	16	41	1.89
47450--47485	14	2.6	14	90	0	54	30	0	22	47	1.52
48719--48777	24	2.5	24	82	0	73	28	16	18	35	1.93
48951--48975	12	2.1	12	100	0	50	72	0	28	0	0.86
51264--51357	33	2.8	33	95	0	161	44	17	24	13	1.85
51264--51361	19	5.7	19	66	22	72	44	17	24	13	1.84
51357--51419	19	3.3	19	84	4	81	15	19	20	44	1.87
51366--51419	20	2.8	19	91	5	90	12	20	20	46	1.83
51526--51562	14	2.6	14	91	0	65	45	24	0	29	1.53
52915--52981	21	3.2	21	68	4	55	19	20	35	23	1.95
52915--53037	42	2.9	41	80	7	113	22	17	36	22	1.95
55028--55212	19	10.1	19	77	14	174	43	22	22	12	1.86
55028--55212	33	5.1	38	81	10	174	43	22	22	12	1.86
55208--55252	19	2.4	19	92	0	72	8	15	26	48	1.74
55801--55894	20	4.7	20	77	2	80	23	17	24	35	1.95
55883--55957	21	3.6	21	78	3	89	17	25	18	38	1.92
55883--55977	41	2.3	41	96	1	174	18	24	17	38	1.92
59575--59601	5	5.4	5	100	0	54	59	0	40	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66892--66929	3	12.7	3	89	10	60	36	0	0	63	0.95
67239--67271	3	11.3	3	87	6	50	39	0	0	60	0.97

Tables:   1

The End!