Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009225.1 Hibiscus syriacus cultivar Beakdansim tig00112827_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59957

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44--125
33
2.5
33
95
0
146
45
17
24
13
1.84
64--129
19
3.7
19
69
19
61
43
18
24
13
1.86
125--185
19
3.2
19
79
9
70
16
19
21
42
1.89
134--186
19
2.8
19
88
8
81
13
20
20
45
1.84
291--326
13
2.6
14
86
8
56
47
25
0
27
1.52
1671--1792
42
2.9
41
80
8
113
22
18
36
22
1.95
3784--3967
20
10.1
19
75
15
165
42
22
22
12
1.86
3784--3967
33
5.1
37
80
13
154
42
22
22
12
1.86
3963--4007
19
2.4
19
92
0
72
8
15
26
48
1.74
4559--4652
20
4.7
20
77
2
80
23
17
24
35
1.95
4641--4736
41
2.3
41
98
0
147
18
23
17
39
1.92
4641--4733
20
4.6
20
78
4
96
18
24
18
38
1.92
8348--8374
5
5.4
5
100
0
54
59
0
40
0
0.98
15722--15764
3
14.7
3
81
13
54
34
0
2
62
1.08
15724--15762
20
2.0
20
90
10
62
33
0
2
64
1.08
16079--16111
3
11.3
3
87
6
50
39
0
0
60
0.97
24857--24941
7
10.8
8
80
15
74
77
0
10
11
0.99
24856--24952
9
10.8
9
74
23
73
78
0
11
10
0.97
24855--24943
17
5.5
17
71
20
66
78
0
10
11
0.96
24876--24927
22
2.4
22
81
9
63
75
0
13
11
1.06
24860--24935
39
2.0
38
87
12
111
75
0
11
13
1.06
24857--24966
7
14.6
7
74
14
53
79
0
10
10
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24856--24966
9
13.5
8
71
20
61
79
0
9
9
0.99
24853--24966
17
6.9
16
71
17
65
78
0
9
10
1.00
26246--26525
55
5.1
55
92
1
483
28
15
28
27
1.96
26246--26528
108
2.6
110
93
2
507
28
14
28
28
1.96
26521--26969
52
8.6
52
94
0
736
28
16
25
29
1.96
26755--26835
24
3.2
24
63
13
63
33
13
27
25
1.94
27242--27274
3
11.3
3
87
6
50
39
0
0
60
0.97
34121--34175
24
2.3
25
84
6
69
30
21
16
30
1.95
35454--35482
15
2.0
15
93
6
51
0
20
3
75
0.94
40096--40144
24
2.0
24
84
7
64
38
0
8
53
1.31
51507--51609
36
2.9
36
89
5
147
42
18
19
19
1.89
51793--51834
3
14.7
3
80
9
52
33
0
2
64
1.07
53556--53593
20
1.9
20
88
0
58
21
26
10
42
1.85
53800--53825
6
4.3
6
100
0
52
34
0
0
65
0.93
53810--53858
24
2.0
24
84
7
64
38
0
8
53
1.31
57656--57697
16
2.6
16
88
0
66
54
26
2
16
1.54
58514--58732
70
3.2
68
79
7
212
29
17
11
41
1.85

Tables:   1

The End!